Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24011.t1 | XP_013468408.1 | 98.7 | 743 | 10 | 0 | 1 | 743 | 1 | 743 | 0.00E+00 | 1496.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24011.t1 | Q9C0C7 | 37.0 | 211 | 116 | 7 | 45 | 251 | 7 | 204 | 8.2e-28 | 127.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24011.t1 | A0A072VWJ3 | 98.7 | 743 | 10 | 0 | 1 | 743 | 1 | 743 | 0.0e+00 | 1496.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049599 | MS.gene24011 | 0.822843 | 1.91E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene24011 | -0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene24011 | 0.829135 | 6.10E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene24011 | -0.821838 | 3.26E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene24011 | 0.817919 | 2.57E-52 | -1.69E-46 |
| MS.gene059033 | MS.gene24011 | 0.980538 | 1.89E-150 | -1.69E-46 |
| MS.gene061049 | MS.gene24011 | -0.805286 | 1.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004739 | MS.gene24011 | PPI |
| MS.gene32105 | MS.gene24011 | PPI |
| MS.gene055332 | MS.gene24011 | PPI |
| MS.gene40034 | MS.gene24011 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24011.t1 | MTR_1g069355 | 98.654 | 743 | 10 | 0 | 1 | 743 | 1 | 743 | 0.0 | 1518 |
| MS.gene24011.t1 | MTR_1g069355 | 96.447 | 760 | 10 | 1 | 1 | 743 | 1 | 760 | 0.0 | 1508 |
| MS.gene24011.t1 | MTR_7g099210 | 66.667 | 783 | 179 | 11 | 22 | 743 | 10 | 771 | 0.0 | 995 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24011.t1 | AT1G04140 | 54.293 | 757 | 297 | 12 | 29 | 741 | 32 | 783 | 0.0 | 771 |
| MS.gene24011.t1 | AT1G04140 | 54.222 | 758 | 298 | 12 | 29 | 742 | 32 | 784 | 0.0 | 770 |
| MS.gene24011.t1 | AT5G43930 | 55.850 | 718 | 273 | 11 | 28 | 729 | 34 | 723 | 0.0 | 746 |
| MS.gene24011.t1 | AT5G43930 | 55.850 | 718 | 273 | 11 | 28 | 729 | 34 | 723 | 0.0 | 746 |
| MS.gene24011.t1 | AT5G43930 | 55.850 | 718 | 273 | 11 | 28 | 729 | 34 | 723 | 0.0 | 746 |
| MS.gene24011.t1 | AT5G43930 | 53.898 | 744 | 273 | 13 | 28 | 729 | 34 | 749 | 0.0 | 728 |
| MS.gene24011.t1 | AT3G49660 | 28.571 | 182 | 116 | 7 | 105 | 277 | 78 | 254 | 3.81e-12 | 68.6 |
Find 194 sgRNAs with CRISPR-Local
Find 451 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTACCTGTAACTGATTT+TGG | 0.115003 | 1.3:+48740671 | MS.gene24011:CDS |
| CATACCTGGTGTTGGAATTC+TGG | 0.178980 | 1.3:-48736996 | None:intergenic |
| TTTCGTACATGCTTGTTTCT+AGG | 0.214459 | 1.3:-48737892 | None:intergenic |
| TGGACCAAGAAGTTCGTTTA+TGG | 0.217778 | 1.3:+48739415 | MS.gene24011:CDS |
| GACCGTGGGGCAGGCAATAA+AGG | 0.268914 | 1.3:-48738181 | None:intergenic |
| AAGATCATTGATTGTGAAAC+TGG | 0.287636 | 1.3:+48738360 | MS.gene24011:CDS |
| CTGAAAAGCATTGTCATTGA+TGG | 0.314557 | 1.3:+48742823 | MS.gene24011:CDS |
| GAGCTAGCTGTGCCACCTTC+AGG | 0.320449 | 1.3:+48740581 | MS.gene24011:CDS |
| GATACTTGCTAGTGGGAGTT+TGG | 0.320714 | 1.3:+48739395 | MS.gene24011:CDS |
| AGCTGCAGTGGCCACTGATT+TGG | 0.321943 | 1.3:-48740774 | None:intergenic |
| TTTGATTAGGCAAAGTAGTA+TGG | 0.323889 | 1.3:-48740274 | None:intergenic |
| ATGCCAATTCTCATTTGATT+AGG | 0.329540 | 1.3:-48740287 | None:intergenic |
| GCACTGTTAACTTAAAAGTA+TGG | 0.343310 | 1.3:+48740813 | MS.gene24011:CDS |
| TGACTGGATTCGATTTATAA+TGG | 0.347676 | 1.3:-48740744 | None:intergenic |
| CATCCCATAAACGAACTTCT+TGG | 0.352429 | 1.3:-48739419 | None:intergenic |
| GGACCAAGAAGTTCGTTTAT+GGG | 0.353088 | 1.3:+48739416 | MS.gene24011:CDS |
| CAACTGTGTTTGCAGTGAAA+TGG | 0.357749 | 1.3:+48741146 | MS.gene24011:intron |
| AGGCAATGAGCAGCTCTAAT+TGG | 0.358191 | 1.3:-48741496 | None:intergenic |
| TGACATGTTGATCTGCGTCC+TGG | 0.364210 | 1.3:-48740108 | None:intergenic |
| CTCTCGCTTTCCATGCCAAT+GGG | 0.366859 | 1.3:+48739600 | MS.gene24011:CDS |
| TTGCCTAATCAAATGAGAAT+TGG | 0.367098 | 1.3:+48740284 | MS.gene24011:CDS |
| CAAAATCAGTTACAGGTAAA+CGG | 0.375548 | 1.3:-48740670 | None:intergenic |
| ATACCTGGTGTTGGAATTCT+GGG | 0.377546 | 1.3:-48736995 | None:intergenic |
| TATCAGATATGGAACTTGTC+AGG | 0.380466 | 1.3:+48743446 | MS.gene24011:CDS |
| CATTACAAGTACGGTCAAAC+TGG | 0.380771 | 1.3:-48743646 | None:intergenic |
| CTGATTTGGCAAGTTCTGAC+TGG | 0.382442 | 1.3:-48740760 | None:intergenic |
| GAATCTTCTGAATCAAAATC+TGG | 0.390715 | 1.3:+48737928 | MS.gene24011:CDS |
| GTTGGAATTCTGGGAGGATG+AGG | 0.392412 | 1.3:-48736986 | None:intergenic |
| TTCCCTGAGGAGAACATGAT+TGG | 0.394808 | 1.3:+48743692 | MS.gene24011:CDS |
| GGATTCGATTTATAATGGTT+TGG | 0.398188 | 1.3:-48740739 | None:intergenic |
| GAAATAATTGCTGTTGCATC+AGG | 0.399592 | 1.3:+48739623 | MS.gene24011:CDS |
| GTTCCGTCACCAGATTCTAA+TGG | 0.400356 | 1.3:+48740437 | MS.gene24011:CDS |
| ACCTGAGCAGTTAAAAGATA+TGG | 0.402129 | 1.3:-48739886 | None:intergenic |
| TCATGTTGGCTTGCTTCGGC+TGG | 0.407111 | 1.3:-48740353 | None:intergenic |
| AGATTGCCAAAATCAGTTAC+AGG | 0.408627 | 1.3:-48740677 | None:intergenic |
| CCTGGATCAGCTTCCATATG+AGG | 0.422073 | 1.3:-48741225 | None:intergenic |
| ATTACTTGATGTGCTGAGAT+TGG | 0.422477 | 1.3:-48741303 | None:intergenic |
| CCTCATATGGAAGCTGATCC+AGG | 0.426677 | 1.3:+48741225 | MS.gene24011:CDS |
| GGTATATAGAGTATCAGATA+TGG | 0.427126 | 1.3:+48743435 | MS.gene24011:intron |
| GCATCTTTGTAGTGGGGCGC+AGG | 0.430270 | 1.3:-48740855 | None:intergenic |
| TCTATTAATTTGCCGCATGA+TGG | 0.442110 | 1.3:+48740707 | MS.gene24011:CDS |
| AACTGTGTTTGCAGTGAAAT+GGG | 0.443834 | 1.3:+48741147 | MS.gene24011:intron |
| ACTCCAATCATGTTCTCCTC+AGG | 0.445874 | 1.3:-48743695 | None:intergenic |
| TTGGAATTCTGGGAGGATGA+GGG | 0.446295 | 1.3:-48736985 | None:intergenic |
| CAAACCGGAGCAGAATATAA+TGG | 0.448038 | 1.3:+48740251 | MS.gene24011:CDS |
| TCATGCGGCAAATTAATAGA+AGG | 0.456728 | 1.3:-48740704 | None:intergenic |
| AGCATGTACGAAAGTGTCAC+TGG | 0.459638 | 1.3:+48737902 | MS.gene24011:CDS |
| TGCATGTATGCACCCTCATA+TGG | 0.459866 | 1.3:+48741212 | MS.gene24011:CDS |
| CGCGTTGAACTCTCTGAGCT+TGG | 0.460612 | 1.3:+48740398 | MS.gene24011:CDS |
| CTTGTCTTCAACACAAATAC+TGG | 0.462774 | 1.3:-48739823 | None:intergenic |
| AAAATCAGTTACAGGTAAAC+GGG | 0.463268 | 1.3:-48740669 | None:intergenic |
| GAAGACAAGGCGCTCGCTAC+GGG | 0.464062 | 1.3:+48739837 | MS.gene24011:CDS |
| ATCTGTTGAGGAAGCATTGA+GGG | 0.465688 | 1.3:-48740515 | None:intergenic |
| AGCTCCCATCCATTAGAATC+TGG | 0.465836 | 1.3:-48740446 | None:intergenic |
| AATTGCTTGAAGGTATTAGT+TGG | 0.468045 | 1.3:+48738384 | MS.gene24011:CDS |
| TGTACAAGAGTTTGTAATCC+TGG | 0.469949 | 1.3:-48741243 | None:intergenic |
| GGATGTCGAGTTGGTGATGT+TGG | 0.470361 | 1.3:-48741282 | None:intergenic |
| AATGTGAATGGCACTGGATC+TGG | 0.470886 | 1.3:+48743665 | MS.gene24011:CDS |
| TGGAAAGCGAGAGATGCAAT+AGG | 0.471210 | 1.3:-48739590 | None:intergenic |
| TCAATGCTTCCTCAACAGAT+TGG | 0.475654 | 1.3:+48740518 | MS.gene24011:CDS |
| AGTCGTACGTTGCTTCCTCC+AGG | 0.477811 | 1.3:-48741347 | None:intergenic |
| TGAGCTCCGGATATATTCCC+TGG | 0.480311 | 1.3:+48741329 | MS.gene24011:CDS |
| GGTTGTAGGAAGGAAAGCTT+AGG | 0.485120 | 1.3:+48743618 | MS.gene24011:intron |
| CTATTAATTTGCCGCATGAT+GGG | 0.485445 | 1.3:+48740708 | MS.gene24011:CDS |
| ACCGTGGGGCAGGCAATAAA+GGG | 0.486720 | 1.3:-48738180 | None:intergenic |
| CTTCCTCCAGGGAATATATC+CGG | 0.487419 | 1.3:-48741335 | None:intergenic |
| AAATTTGATTTCCAGGGTCG+AGG | 0.494344 | 1.3:+48738123 | MS.gene24011:intron |
| TCATTGCCTGACTTCAATCC+AGG | 0.496863 | 1.3:+48741510 | MS.gene24011:CDS |
| AACTGACCTGGATTGAAGTC+AGG | 0.498949 | 1.3:-48741516 | None:intergenic |
| GACATGTTGATCTGCGTCCT+GGG | 0.499424 | 1.3:-48740107 | None:intergenic |
| GGAAAATTCATACCTGGTGT+TGG | 0.500969 | 1.3:-48737004 | None:intergenic |
| ATCATCAATATATACAGTCT+TGG | 0.501445 | 1.3:+48742855 | MS.gene24011:CDS |
| ATCAAGTAATGTATGAGCTC+CGG | 0.501752 | 1.3:+48741316 | MS.gene24011:CDS |
| ATGTTGGAAGTCCAGGCTCC+TGG | 0.502548 | 1.3:-48741266 | None:intergenic |
| AGGCAATAAAGGGCAATACT+TGG | 0.503801 | 1.3:-48738170 | None:intergenic |
| ATGAAGTTCCGCTGATTCCA+TGG | 0.504022 | 1.3:-48736944 | None:intergenic |
| GTTGGTGATGTTGGAAGTCC+AGG | 0.505185 | 1.3:-48741273 | None:intergenic |
| GGCATCAATAACCTCACAAT+GGG | 0.506104 | 1.3:+48740305 | MS.gene24011:CDS |
| GCCCTTTATTGCCTGCCCCA+CGG | 0.507234 | 1.3:+48738179 | MS.gene24011:CDS |
| AACAGCAATTATTTCCCCAT+TGG | 0.507326 | 1.3:-48739615 | None:intergenic |
| GAGCATATTCTGCTCGCCTA+TGG | 0.507585 | 1.3:+48742781 | MS.gene24011:CDS |
| ACTAACCATCCTTGCAGAAA+AGG | 0.507866 | 1.3:-48740470 | None:intergenic |
| CAAAGTGTGGTCTCCTCTCA+TGG | 0.508856 | 1.3:+48737980 | MS.gene24011:CDS |
| TGAAGACAAGGCGCTCGCTA+CGG | 0.509890 | 1.3:+48739836 | MS.gene24011:CDS |
| TGCAGGTATGCTGATGCCAT+TGG | 0.509948 | 1.3:-48740609 | None:intergenic |
| CAATTATTTCCCCATTGGCA+TGG | 0.510982 | 1.3:-48739610 | None:intergenic |
| TTGGCCACAGAAGGACGCCT+TGG | 0.512523 | 1.3:+48738403 | MS.gene24011:CDS |
| TGGCCACAGAAGGACGCCTT+GGG | 0.514365 | 1.3:+48738404 | MS.gene24011:CDS |
| GCTTTCTAGTGCAGAGGATG+AGG | 0.517539 | 1.3:+48743471 | MS.gene24011:CDS |
| ACTCTTGTACACCAGGAGCC+TGG | 0.517642 | 1.3:+48741255 | MS.gene24011:CDS |
| AGAGCTATGACGTCGACCAT+AGG | 0.518312 | 1.3:-48742797 | None:intergenic |
| TCTCTCGCTTTCCATGCCAA+TGG | 0.519282 | 1.3:+48739599 | MS.gene24011:CDS |
| GACCGTACTTGTAATGTGAA+TGG | 0.523270 | 1.3:+48743653 | MS.gene24011:CDS |
| GGAAAGCGAGAGATGCAATA+GGG | 0.526031 | 1.3:-48739589 | None:intergenic |
| CGTCACCAGATTCTAATGGA+TGG | 0.526206 | 1.3:+48740441 | MS.gene24011:CDS |
| CAGCATGCTAGTAACGATGT+TGG | 0.526306 | 1.3:+48740161 | MS.gene24011:CDS |
| TTAGACGGCATCTTTGTAGT+GGG | 0.528947 | 1.3:-48740862 | None:intergenic |
| TAACCTCACAATGGGTGGTA+GGG | 0.531061 | 1.3:+48740313 | MS.gene24011:CDS |
| GTATCTGTCGTTGCAATGGA+TGG | 0.531769 | 1.3:-48739377 | None:intergenic |
| GCAATAGTAGACCGTGGGGC+AGG | 0.533067 | 1.3:-48738190 | None:intergenic |
| TTGTCACAAATGTTCATCCC+AGG | 0.536231 | 1.3:+48740090 | MS.gene24011:CDS |
| TGCTCCGGTTTGAGAGCTAG+TGG | 0.536252 | 1.3:-48740240 | None:intergenic |
| ATCAATATATACAGTCTTGG+AGG | 0.536387 | 1.3:+48742858 | MS.gene24011:CDS |
| TACCACATGTCGTCCTCTGC+AGG | 0.539111 | 1.3:+48740888 | MS.gene24011:CDS |
| GCTGCAGCATTTAGTCCAGA+TGG | 0.539276 | 1.3:+48738211 | MS.gene24011:CDS |
| TGAAACTGGAAATTGCTTGA+AGG | 0.539434 | 1.3:+48738374 | MS.gene24011:CDS |
| AGGTATTAGTTGGCCACAGA+AGG | 0.539720 | 1.3:+48738394 | MS.gene24011:CDS |
| TTGGTGGTGAACAGATTAGA+TGG | 0.541889 | 1.3:-48740554 | None:intergenic |
| ATGGCCATTATATTCTGCTC+CGG | 0.541908 | 1.3:-48740255 | None:intergenic |
| CCACCCAAGGCGTCCTTCTG+TGG | 0.544228 | 1.3:-48738407 | None:intergenic |
| ACTTGTAATGTGAATGGCAC+TGG | 0.544885 | 1.3:+48743659 | MS.gene24011:CDS |
| GCAGGTATGCTGATGCCATT+GGG | 0.544979 | 1.3:-48740608 | None:intergenic |
| CACAGCTAGCTCAACATTGG+TGG | 0.546180 | 1.3:-48740570 | None:intergenic |
| AAAGATATGGTGCCCCATGC+GGG | 0.547922 | 1.3:-48739873 | None:intergenic |
| TTGAGAGCTAGTGGGTATCT+CGG | 0.549485 | 1.3:-48740231 | None:intergenic |
| GCAAGTATCTGTCGTTGCAA+TGG | 0.550367 | 1.3:-48739381 | None:intergenic |
| ATGACAGAGGCAACATCTCA+TGG | 0.552996 | 1.3:+48740038 | MS.gene24011:CDS |
| ATCAATAACCTCACAATGGG+TGG | 0.553944 | 1.3:+48740308 | MS.gene24011:CDS |
| CAGGGTGCTTTCTAGTGCAG+AGG | 0.555084 | 1.3:+48743465 | MS.gene24011:CDS |
| ATAACCTCACAATGGGTGGT+AGG | 0.558003 | 1.3:+48740312 | MS.gene24011:CDS |
| GTCACCAGATTCTAATGGAT+GGG | 0.560045 | 1.3:+48740442 | MS.gene24011:CDS |
| GCATTGAGGGAACACCAACT+TGG | 0.562253 | 1.3:-48740502 | None:intergenic |
| CATCTTTGTAGTGGGGCGCA+GGG | 0.564972 | 1.3:-48740854 | None:intergenic |
| GTTAGACGGCATCTTTGTAG+TGG | 0.565047 | 1.3:-48740863 | None:intergenic |
| CAGTATTTGTGTTGAAGACA+AGG | 0.566784 | 1.3:+48739824 | MS.gene24011:CDS |
| TGCCATTCACATTACAAGTA+CGG | 0.568037 | 1.3:-48743655 | None:intergenic |
| TTTCTGCAAGGATGGTTAGT+CGG | 0.570950 | 1.3:+48740473 | MS.gene24011:CDS |
| CTCCAATCATGTTCTCCTCA+GGG | 0.571222 | 1.3:-48743694 | None:intergenic |
| ATGCCATTGGGCATTCCTGA+AGG | 0.574190 | 1.3:-48740596 | None:intergenic |
| CTGCAGCATTTAGTCCAGAT+GGG | 0.574217 | 1.3:+48738212 | MS.gene24011:CDS |
| AAGCCAAAGCTTACCACCCA+AGG | 0.576210 | 1.3:-48738420 | None:intergenic |
| AAACCTGATTGTAAAACTGC+AGG | 0.577206 | 1.3:-48740626 | None:intergenic |
| ATACCCACTAGCTCTCAAAC+CGG | 0.582499 | 1.3:+48740236 | MS.gene24011:CDS |
| CTGTTCTCGTTCTAGAACAG+TGG | 0.583294 | 1.3:+48737951 | MS.gene24011:CDS |
| CTGCAGCAATAGTAGACCGT+GGG | 0.583872 | 1.3:-48738195 | None:intergenic |
| TGCTGTTGCATCAGGTCACA+AGG | 0.586241 | 1.3:+48739631 | MS.gene24011:CDS |
| GTGAAAGAACCAATCTGTTG+AGG | 0.587730 | 1.3:-48740527 | None:intergenic |
| CTGGATCAGCTTCCATATGA+GGG | 0.589361 | 1.3:-48741224 | None:intergenic |
| TGATTCCATGGAAAATTCCA+TGG | 0.590591 | 1.3:-48736932 | None:intergenic |
| TGTTGGTTTGAGTAGCATGC+AGG | 0.590711 | 1.3:+48740178 | MS.gene24011:CDS |
| AATTCAACTCTTGACACTGG+TGG | 0.591913 | 1.3:-48740137 | None:intergenic |
| TAATTCTGTAGCAGCTGCAG+TGG | 0.593424 | 1.3:-48740786 | None:intergenic |
| GCTCCGGTTTGAGAGCTAGT+GGG | 0.596135 | 1.3:-48740239 | None:intergenic |
| TCTGGTGACGGAACAATCTG+AGG | 0.598901 | 1.3:-48740428 | None:intergenic |
| CCTCCCAGAATTCCAACACC+AGG | 0.599555 | 1.3:+48736992 | MS.gene24011:CDS |
| CGACATGTGGTATAGTTAGA+CGG | 0.600026 | 1.3:-48740877 | None:intergenic |
| ATCAGATATGGAACTTGTCA+GGG | 0.600976 | 1.3:+48743447 | MS.gene24011:CDS |
| AAAAGATATGGTGCCCCATG+CGG | 0.601223 | 1.3:-48739874 | None:intergenic |
| GTCGTACGTTGCTTCCTCCA+GGG | 0.604411 | 1.3:-48741346 | None:intergenic |
| CCTCACAATGGGTGGTAGGG+AGG | 0.605498 | 1.3:+48740316 | MS.gene24011:CDS |
| AGCAGAATATGCTCAGATGT+AGG | 0.609510 | 1.3:-48742772 | None:intergenic |
| ATTACAAACTCTTGTACACC+AGG | 0.610235 | 1.3:+48741248 | MS.gene24011:CDS |
| TCATTTAGAATATCCTCCAC+CGG | 0.610636 | 1.3:+48740061 | MS.gene24011:CDS |
| AGCATGCAGGTTGAACAATA+CGG | 0.618359 | 1.3:+48740191 | MS.gene24011:CDS |
| CCACAGAAGGACGCCTTGGG+TGG | 0.618769 | 1.3:+48738407 | MS.gene24011:CDS |
| GCATGTACGAAAGTGTCACT+GGG | 0.618857 | 1.3:+48737903 | MS.gene24011:CDS |
| CCACCTTCAGGAATGCCCAA+TGG | 0.620224 | 1.3:+48740593 | MS.gene24011:CDS |
| GTCAGAACTTGCCAAATCAG+TGG | 0.622712 | 1.3:+48740763 | MS.gene24011:CDS |
| TGGCACAGCTAGCTCAACAT+TGG | 0.624707 | 1.3:-48740573 | None:intergenic |
| AATCTGTTGAGGAAGCATTG+AGG | 0.627493 | 1.3:-48740516 | None:intergenic |
| CCATTGGGCATTCCTGAAGG+TGG | 0.630429 | 1.3:-48740593 | None:intergenic |
| TGGCATCAATAACCTCACAA+TGG | 0.635026 | 1.3:+48740304 | MS.gene24011:CDS |
| TCAGTTACAGGTAAACGGGA+TGG | 0.636538 | 1.3:-48740665 | None:intergenic |
| AACGACAGATACTTGCTAGT+GGG | 0.637390 | 1.3:+48739388 | MS.gene24011:CDS |
| GCTGAGATTGGATGTCGAGT+TGG | 0.638438 | 1.3:-48741291 | None:intergenic |
| CAACGACAGATACTTGCTAG+TGG | 0.639744 | 1.3:+48739387 | MS.gene24011:CDS |
| TGCAATTCAACTCTTGACAC+TGG | 0.641673 | 1.3:-48740140 | None:intergenic |
| TTCAGATTGCTCAATGACAG+AGG | 0.641679 | 1.3:+48740025 | MS.gene24011:CDS |
| ACTTCAGAAGGTACCTGCAG+AGG | 0.645206 | 1.3:-48740901 | None:intergenic |
| AGTTGTGTAAGTACCATGAG+AGG | 0.649049 | 1.3:-48737993 | None:intergenic |
| TACTGTGTCAGTTGTACGTG+TGG | 0.650194 | 1.3:+48739770 | MS.gene24011:intron |
| TAGACGGCATCTTTGTAGTG+GGG | 0.650831 | 1.3:-48740861 | None:intergenic |
| AATTGCAACTTACTGTGTGG+AGG | 0.655631 | 1.3:-48738245 | None:intergenic |
| GTTGTAGGAAGGAAAGCTTA+GGG | 0.656714 | 1.3:+48743619 | MS.gene24011:intron |
| CCTCCCTACCACCCATTGTG+AGG | 0.659125 | 1.3:-48740316 | None:intergenic |
| CATCCATTAGAATCTGGTGA+CGG | 0.670518 | 1.3:-48740440 | None:intergenic |
| TTAGTCGGTCAAAGCCAAGT+TGG | 0.670959 | 1.3:+48740488 | MS.gene24011:CDS |
| TACCTGCAGAGGACGACATG+TGG | 0.671719 | 1.3:-48740890 | None:intergenic |
| TGCAGAGGATGAGGTCAATG+TGG | 0.674617 | 1.3:+48743480 | MS.gene24011:CDS |
| GCTGCAGCAATAGTAGACCG+TGG | 0.674851 | 1.3:-48738196 | None:intergenic |
| AGGGTGCATACATGCAACAC+AGG | 0.677223 | 1.3:-48741205 | None:intergenic |
| TGGCTATCAAACCCATCATG+CGG | 0.678387 | 1.3:-48740719 | None:intergenic |
| GTGCATACATGCAACACAGG+CGG | 0.681773 | 1.3:-48741202 | None:intergenic |
| TCTCGCTTTCCATGCCAATG+GGG | 0.682220 | 1.3:+48739601 | MS.gene24011:CDS |
| AATCAATGATCTTAACTGTG+TGG | 0.684417 | 1.3:-48738350 | None:intergenic |
| AGGGCTTGTCTATGGAACCA+AGG | 0.695022 | 1.3:+48743528 | MS.gene24011:CDS |
| GGGATGCTAGCTCATCAGAG+TGG | 0.698330 | 1.3:+48739436 | MS.gene24011:CDS |
| TGGATCTGGTTACTTCCCTG+AGG | 0.705098 | 1.3:+48743679 | MS.gene24011:CDS |
| ACAGTGGTAGATGCAAAGTG+TGG | 0.719121 | 1.3:+48737967 | MS.gene24011:CDS |
| TGCAGCAATAGTAGACCGTG+GGG | 0.726709 | 1.3:-48738194 | None:intergenic |
| GAGGGTTGATCATGACACAG+AGG | 0.745622 | 1.3:-48736967 | None:intergenic |
| GCTCCGGATATATTCCCTGG+AGG | 0.749636 | 1.3:+48741332 | MS.gene24011:CDS |
| CCTGGTGTTGGAATTCTGGG+AGG | 0.755260 | 1.3:-48736992 | None:intergenic |
| CATGTACGAAAGTGTCACTG+GGG | 0.771233 | 1.3:+48737904 | MS.gene24011:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTTAAATTT+GGG | + | chr1.3:48737823-48737842 | MS.gene24011:intron | 0.0% |
| !!! | TTTATTTTTATTTTTAAATT+TGG | + | chr1.3:48737822-48737841 | MS.gene24011:intron | 0.0% |
| !! | TATAATCTCTATATAATTAT+TGG | + | chr1.3:48743226-48743245 | MS.gene24011:intron | 10.0% |
| !! | AAAATAGAAATATGATTATG+AGG | - | chr1.3:48742342-48742361 | None:intergenic | 15.0% |
| !! | AAAATTACTTCAAAATACTT+AGG | - | chr1.3:48737340-48737359 | None:intergenic | 15.0% |
| !! | AATAACCACATAATTATTTA+GGG | - | chr1.3:48737254-48737273 | None:intergenic | 15.0% |
| !! | ACAACTTAAAAAAAATACTT+AGG | - | chr1.3:48737145-48737164 | None:intergenic | 15.0% |
| !! | ATATAAAACTATTATTCACT+TGG | - | chr1.3:48738517-48738536 | None:intergenic | 15.0% |
| !! | CTCAAAATAAAATAAAAAAG+AGG | + | chr1.3:48741669-48741688 | MS.gene24011:intron | 15.0% |
| !! | TAAAAATAAAAAATCATGTG+AGG | - | chr1.3:48737812-48737831 | None:intergenic | 15.0% |
| !! | TAATAACCACATAATTATTT+AGG | - | chr1.3:48737255-48737274 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAAGGTTTA+AGG | - | chr1.3:48741767-48741786 | None:intergenic | 15.0% |
| !!! | AATCAAAAAATTACTTTTCT+TGG | + | chr1.3:48742707-48742726 | MS.gene24011:intron | 15.0% |
| !!! | AATGCACTTATTTTTTTTTA+TGG | + | chr1.3:48743103-48743122 | MS.gene24011:intron | 15.0% |
| !!! | ATAAATTTTAATGATATGCT+TGG | - | chr1.3:48741429-48741448 | None:intergenic | 15.0% |
| !!! | ATCATTTTTTACAAGTTAAT+TGG | + | chr1.3:48737448-48737467 | MS.gene24011:intron | 15.0% |
| !!! | ATGCACTTATTTTTTTTTAT+GGG | + | chr1.3:48743104-48743123 | MS.gene24011:intron | 15.0% |
| !!! | ATTTTTAAATTTGATTTCCA+GGG | + | chr1.3:48738117-48738136 | MS.gene24011:intron | 15.0% |
| !!! | CTATAAAAACTATTACTTTT+TGG | + | chr1.3:48739947-48739966 | MS.gene24011:intron | 15.0% |
| !!! | CTCTTTTTTATTTTATTTTG+AGG | - | chr1.3:48741671-48741690 | None:intergenic | 15.0% |
| !!! | GAATACATTATTCTTTTTTT+GGG | + | chr1.3:48741596-48741615 | MS.gene24011:intron | 15.0% |
| !!! | TATTTTGTTTAATTGTGATT+TGG | + | chr1.3:48739741-48739760 | MS.gene24011:intron | 15.0% |
| !!! | TCATTTTTTACAAGTTAATT+GGG | + | chr1.3:48737449-48737468 | MS.gene24011:intron | 15.0% |
| !!! | TGAATACATTATTCTTTTTT+TGG | + | chr1.3:48741595-48741614 | MS.gene24011:intron | 15.0% |
| !! | AAAAGAAATGAAAAGGAAAA+AGG | - | chr1.3:48738461-48738480 | None:intergenic | 20.0% |
| !! | AAACAAACTGTTGTAATATT+GGG | - | chr1.3:48742282-48742301 | None:intergenic | 20.0% |
| !! | AAAGTTGTTATAGAAATGTT+TGG | + | chr1.3:48741076-48741095 | MS.gene24011:intron | 20.0% |
| !! | AAATAGGTAAGTAAACTATT+AGG | - | chr1.3:48742616-48742635 | None:intergenic | 20.0% |
| !! | AATAAACTAATTGATCAAGT+CGG | - | chr1.3:48738614-48738633 | None:intergenic | 20.0% |
| !! | AATGTGATTAACAATAGAAA+AGG | - | chr1.3:48739502-48739521 | None:intergenic | 20.0% |
| !! | ATACATATGATATTCAATTC+TGG | + | chr1.3:48737066-48737085 | MS.gene24011:intron | 20.0% |
| !! | ATATATCTCATCAAACTTAA+TGG | - | chr1.3:48738831-48738850 | None:intergenic | 20.0% |
| !! | ATATGAAAGTAATGAAAATC+TGG | + | chr1.3:48741897-48741916 | MS.gene24011:intron | 20.0% |
| !! | ATGCTGAACATAAATTAAAA+AGG | - | chr1.3:48742308-48742327 | None:intergenic | 20.0% |
| !! | ATGTGATTAACAATAGAAAA+GGG | - | chr1.3:48739501-48739520 | None:intergenic | 20.0% |
| !! | GAATATTAACAAAGAAGATA+TGG | - | chr1.3:48737028-48737047 | None:intergenic | 20.0% |
| !! | TAAAACACAAACAAATTCAA+AGG | - | chr1.3:48743415-48743434 | None:intergenic | 20.0% |
| !! | TAAGGATAATTAATCCAAAT+TGG | - | chr1.3:48741749-48741768 | None:intergenic | 20.0% |
| !! | TAATACTTCCATTAAATTAG+AGG | - | chr1.3:48743029-48743048 | None:intergenic | 20.0% |
| !! | TCTAAATACCTCTAATTTAA+TGG | + | chr1.3:48743018-48743037 | MS.gene24011:intron | 20.0% |
| !! | TGCTAAAAAATTCAAAATTG+TGG | - | chr1.3:48741835-48741854 | None:intergenic | 20.0% |
| !! | TTAAACCCTAAATAATTATG+TGG | + | chr1.3:48737246-48737265 | MS.gene24011:intron | 20.0% |
| !!! | ATTTGGAATAATGTGTTAAT+CGG | + | chr1.3:48739340-48739359 | MS.gene24011:intron | 20.0% |
| !!! | ATTTTTGTGTCAAAAAAACA+AGG | - | chr1.3:48742147-48742166 | None:intergenic | 20.0% |
| !!! | CATTTTTAAATTTGATTTCC+AGG | + | chr1.3:48738116-48738135 | MS.gene24011:intron | 20.0% |
| !!! | GATAATTTTAGATTGAGAAA+AGG | - | chr1.3:48742897-48742916 | None:intergenic | 20.0% |
| !!! | GTTAAATTTTGAAGTTGAAT+TGG | + | chr1.3:48737313-48737332 | MS.gene24011:intron | 20.0% |
| !!! | TACATTTCTTTTAACAGATT+TGG | + | chr1.3:48741454-48741473 | MS.gene24011:intron | 20.0% |
| !!! | TTACTTAACTTCCTTTTATT+AGG | - | chr1.3:48738750-48738769 | None:intergenic | 20.0% |
| !!! | TTACTTTCATATTGAACTTT+TGG | - | chr1.3:48741889-48741908 | None:intergenic | 20.0% |
| !!! | TTGATTCTTTTGTACTTTTT+GGG | + | chr1.3:48739133-48739152 | MS.gene24011:intron | 20.0% |
| !!! | TTGTTTTTATAGTCTTCATT+TGG | + | chr1.3:48739323-48739342 | MS.gene24011:intron | 20.0% |
| !!! | TTTGAATTTGTTTGTGTTTT+AGG | + | chr1.3:48743414-48743433 | MS.gene24011:intron | 20.0% |
| !!! | TTTGATTCTTTTGTACTTTT+TGG | + | chr1.3:48739132-48739151 | MS.gene24011:intron | 20.0% |
| !!! | TTTTTGTGTCAAAAAAACAA+GGG | - | chr1.3:48742146-48742165 | None:intergenic | 20.0% |
| ! | AAATATGATTATGAGGATTG+AGG | - | chr1.3:48742335-48742354 | None:intergenic | 25.0% |
| ! | AAATTCACAATAAACAAGGT+GGG | - | chr1.3:48737761-48737780 | None:intergenic | 25.0% |
| ! | AACAATAATGAATTCGACAT+TGG | - | chr1.3:48737715-48737734 | None:intergenic | 25.0% |
| ! | AATATGATTATGAGGATTGA+GGG | - | chr1.3:48742334-48742353 | None:intergenic | 25.0% |
| ! | AATCATTAATCAACAACAAC+AGG | - | chr1.3:48738645-48738664 | None:intergenic | 25.0% |
| ! | ACTGTATTGTTTAACATTGT+AGG | + | chr1.3:48742218-48742237 | MS.gene24011:intron | 25.0% |
| ! | AGTTAATTTACTTTATCACC+TGG | + | chr1.3:48741535-48741554 | MS.gene24011:intron | 25.0% |
| ! | ATAAACTCAACTCCATAAAT+TGG | - | chr1.3:48738866-48738885 | None:intergenic | 25.0% |
| ! | ATAAAGTAAATTAACTGACC+TGG | - | chr1.3:48741531-48741550 | None:intergenic | 25.0% |
| ! | ATAATTATTGGTCAACAAGT+AGG | + | chr1.3:48743238-48743257 | MS.gene24011:intron | 25.0% |
| ! | ATACATGTTAACTTAACAGT+AGG | + | chr1.3:48742008-48742027 | MS.gene24011:intron | 25.0% |
| ! | ATCATCAATATATACAGTCT+TGG | + | chr1.3:48742855-48742874 | MS.gene24011:CDS | 25.0% |
| ! | CTTCAAATTCACAATAAACA+AGG | - | chr1.3:48737765-48737784 | None:intergenic | 25.0% |
| ! | GAAACAAACTGTTGTAATAT+TGG | - | chr1.3:48742283-48742302 | None:intergenic | 25.0% |
| ! | GGGATGATAACAAAAAAAAT+TGG | + | chr1.3:48737469-48737488 | MS.gene24011:intron | 25.0% |
| ! | GGTATAAATTATACACTGAA+CGG | - | chr1.3:48738024-48738043 | None:intergenic | 25.0% |
| ! | TACATGTTAACTTAACAGTA+GGG | + | chr1.3:48742009-48742028 | MS.gene24011:intron | 25.0% |
| ! | TATACAAAAGGTAAATCCAT+TGG | + | chr1.3:48742566-48742585 | MS.gene24011:intron | 25.0% |
| ! | TATGTGGTTATTAATTCTCA+GGG | + | chr1.3:48737262-48737281 | MS.gene24011:intron | 25.0% |
| ! | TGGTATAAAATTGAATGCAA+CGG | - | chr1.3:48739024-48739043 | None:intergenic | 25.0% |
| ! | TGTGATTAACAATAGAAAAG+GGG | - | chr1.3:48739500-48739519 | None:intergenic | 25.0% |
| ! | TTAAGTAAGAAATCTGTACT+GGG | + | chr1.3:48738762-48738781 | MS.gene24011:intron | 25.0% |
| ! | TTAATGTTTAGTTGTTGTGT+TGG | + | chr1.3:48743277-48743296 | MS.gene24011:intron | 25.0% |
| ! | TTATGTGGTTATTAATTCTC+AGG | + | chr1.3:48737261-48737280 | MS.gene24011:intron | 25.0% |
| ! | TTCTCATATTCTGTAACTAT+GGG | - | chr1.3:48739248-48739267 | None:intergenic | 25.0% |
| ! | TTCTCTTTGATGAACTTAAT+GGG | + | chr1.3:48739550-48739569 | MS.gene24011:intron | 25.0% |
| ! | TTTCTCTTTGATGAACTTAA+TGG | + | chr1.3:48739549-48739568 | MS.gene24011:intron | 25.0% |
| !! | AAATTCGTGTATTTTTCATC+CGG | - | chr1.3:48737496-48737515 | None:intergenic | 25.0% |
| !! | ATTGAATTTTTGTGTGCTTT+TGG | + | chr1.3:48738312-48738331 | MS.gene24011:intron | 25.0% |
| !! | GTTTTGCTTACAATCAAATT+TGG | + | chr1.3:48743182-48743201 | MS.gene24011:intron | 25.0% |
| !! | TTAACTTCCTTTTATTAGGA+CGG | - | chr1.3:48738746-48738765 | None:intergenic | 25.0% |
| !! | TTAAGTTAGCTGAGATTTTT+AGG | + | chr1.3:48737212-48737231 | MS.gene24011:intron | 25.0% |
| !! | TTCTTTTAACAGATTTGGAT+CGG | + | chr1.3:48741459-48741478 | MS.gene24011:intron | 25.0% |
| !! | TTGTTTAATTGTGATTTGGA+TGG | + | chr1.3:48739745-48739764 | MS.gene24011:intron | 25.0% |
| !!! | CAAAAAATTACTTTTCTTGG+TGG | + | chr1.3:48742710-48742729 | MS.gene24011:intron | 25.0% |
| !!! | CAAAAGGCTTTGTTTTTATT+CGG | - | chr1.3:48738045-48738064 | None:intergenic | 25.0% |
| !!! | TTATTTTTAAATTTGGGCAG+TGG | + | chr1.3:48737829-48737848 | MS.gene24011:intron | 25.0% |
| !!! | TTCTTTTTTGTCACCATATT+TGG | + | chr1.3:48739973-48739992 | MS.gene24011:intron | 25.0% |
| !!! | TTGTAAAGTGAGTTTGATTT+TGG | + | chr1.3:48739060-48739079 | MS.gene24011:intron | 25.0% |
| AAAATCAGTTACAGGTAAAC+GGG | - | chr1.3:48740672-48740691 | None:intergenic | 30.0% | |
| AAAGAGTCTGTGATTCAAAT+TGG | - | chr1.3:48738289-48738308 | None:intergenic | 30.0% | |
| AAATACATGAATGAGATGAC+TGG | - | chr1.3:48743354-48743373 | None:intergenic | 30.0% | |
| AACATAGACTGATTACTTGA+TGG | + | chr1.3:48741036-48741055 | MS.gene24011:intron | 30.0% | |
| AATACATGAATGAGATGACT+GGG | - | chr1.3:48743353-48743372 | None:intergenic | 30.0% | |
| AATCAATGATCTTAACTGTG+TGG | - | chr1.3:48738353-48738372 | None:intergenic | 30.0% | |
| AGATATGGAAAATTCATACC+TGG | - | chr1.3:48737013-48737032 | None:intergenic | 30.0% | |
| ATCAATATATACAGTCTTGG+AGG | + | chr1.3:48742858-48742877 | MS.gene24011:CDS | 30.0% | |
| ATGCCAATTCTCATTTGATT+AGG | - | chr1.3:48740290-48740309 | None:intergenic | 30.0% | |
| ATGTTGTTGAATGATTGTTG+AGG | + | chr1.3:48737565-48737584 | MS.gene24011:intron | 30.0% | |
| ATTAAACTCGTTGACAACTT+AGG | + | chr1.3:48737588-48737607 | MS.gene24011:intron | 30.0% | |
| CAAAATCAGTTACAGGTAAA+CGG | - | chr1.3:48740673-48740692 | None:intergenic | 30.0% | |
| CAAATTCACAATAAACAAGG+TGG | - | chr1.3:48737762-48737781 | None:intergenic | 30.0% | |
| CCAGACAAAAAGAAATGAAA+AGG | - | chr1.3:48738468-48738487 | None:intergenic | 30.0% | |
| GAATCTTCTGAATCAAAATC+TGG | + | chr1.3:48737928-48737947 | MS.gene24011:CDS | 30.0% | |
| GAATTCATTATTGTTAGCTG+TGG | + | chr1.3:48737720-48737739 | MS.gene24011:intron | 30.0% | |
| GAGCTCAAAAATTGATTACT+AGG | - | chr1.3:48741924-48741943 | None:intergenic | 30.0% | |
| GATAACAAAAAAAATTGGCC+CGG | + | chr1.3:48737474-48737493 | MS.gene24011:intron | 30.0% | |
| GATAACAATTATAGTGCCAA+TGG | - | chr1.3:48742585-48742604 | None:intergenic | 30.0% | |
| GCACTGTTAACTTAAAAGTA+TGG | + | chr1.3:48740813-48740832 | MS.gene24011:CDS | 30.0% | |
| GGATTCGATTTATAATGGTT+TGG | - | chr1.3:48740742-48740761 | None:intergenic | 30.0% | |
| GTTAAGTAAGAAATCTGTAC+TGG | + | chr1.3:48738761-48738780 | MS.gene24011:intron | 30.0% | |
| GTTCTCATATTCTGTAACTA+TGG | - | chr1.3:48739249-48739268 | None:intergenic | 30.0% | |
| TACTAGCAACAATTGTTGAA+AGG | - | chr1.3:48741376-48741395 | None:intergenic | 30.0% | |
| TGACTGGATTCGATTTATAA+TGG | - | chr1.3:48740747-48740766 | None:intergenic | 30.0% | |
| TGCAACTTCAAGACAAAAAT+AGG | - | chr1.3:48742632-48742651 | None:intergenic | 30.0% | |
| TTAAACTCGTTGACAACTTA+GGG | + | chr1.3:48737589-48737608 | MS.gene24011:intron | 30.0% | |
| TTGCATAATTTACATCAACC+AGG | - | chr1.3:48741556-48741575 | None:intergenic | 30.0% | |
| TTGCCTAATCAAATGAGAAT+TGG | + | chr1.3:48740284-48740303 | MS.gene24011:CDS | 30.0% | |
| TTTCTCGTGCTCATAAAAAA+AGG | - | chr1.3:48742083-48742102 | None:intergenic | 30.0% | |
| TTTGATTAGGCAAAGTAGTA+TGG | - | chr1.3:48740277-48740296 | None:intergenic | 30.0% | |
| ! | AAGATCATTGATTGTGAAAC+TGG | + | chr1.3:48738360-48738379 | MS.gene24011:CDS | 30.0% |
| ! | AATTCGTGTATTTTTCATCC+GGG | - | chr1.3:48737495-48737514 | None:intergenic | 30.0% |
| ! | AGTTATTTGAACTTAGCTTG+AGG | + | chr1.3:48737393-48737412 | MS.gene24011:intron | 30.0% |
| ! | ATGAAAGCAGGTAATTTTCA+AGG | - | chr1.3:48741641-48741660 | None:intergenic | 30.0% |
| ! | ATGTATGGTGGGAATAAATA+TGG | - | chr1.3:48737667-48737686 | None:intergenic | 30.0% |
| ! | ATTTTTGTCTTGAAGTTGCA+TGG | + | chr1.3:48742632-48742651 | MS.gene24011:intron | 30.0% |
| ! | CATTCTAAAAATGTCGTTCA+TGG | - | chr1.3:48743087-48743106 | None:intergenic | 30.0% |
| ! | CCTTTTCATTTCTTTTTGTC+TGG | + | chr1.3:48738465-48738484 | MS.gene24011:intron | 30.0% |
| ! | GGTATATAGAGTATCAGATA+TGG | + | chr1.3:48743435-48743454 | MS.gene24011:intron | 30.0% |
| ! | GTTATTTGAACTTAGCTTGA+GGG | + | chr1.3:48737394-48737413 | MS.gene24011:intron | 30.0% |
| ! | TAACTTCCTTTTATTAGGAC+GGG | - | chr1.3:48738745-48738764 | None:intergenic | 30.0% |
| ! | TAATTGACTTTCCTAGAGAA+AGG | - | chr1.3:48738086-48738105 | None:intergenic | 30.0% |
| ! | TGAAAGCAGGTAATTTTCAA+GGG | - | chr1.3:48741640-48741659 | None:intergenic | 30.0% |
| ! | TGAATTTGTTTCCTTTCTCT+AGG | + | chr1.3:48738072-48738091 | MS.gene24011:intron | 30.0% |
| ! | TTCTTTTATTCGAGACATGA+GGG | - | chr1.3:48742966-48742985 | None:intergenic | 30.0% |
| ! | TTTCTTTTATTCGAGACATG+AGG | - | chr1.3:48742967-48742986 | None:intergenic | 30.0% |
| ! | TTTTTGTCTTGAAGTTGCAT+GGG | + | chr1.3:48742633-48742652 | MS.gene24011:intron | 30.0% |
| !! | AATTGCTTGAAGGTATTAGT+TGG | + | chr1.3:48738384-48738403 | MS.gene24011:CDS | 30.0% |
| !! | ACTGACTTGGATTAATTAAC+TGG | + | chr1.3:48739915-48739934 | MS.gene24011:intron | 30.0% |
| !! | GCTATTACTGAATTTGTTGT+TGG | + | chr1.3:48739526-48739545 | MS.gene24011:intron | 30.0% |
| !! | TCACTGTATTGATTCAACTA+GGG | + | chr1.3:48737363-48737382 | MS.gene24011:intron | 30.0% |
| !! | TTATACCATGTTATTTCCCA+TGG | + | chr1.3:48739036-48739055 | MS.gene24011:intron | 30.0% |
| !! | TTCACTGTATTGATTCAACT+AGG | + | chr1.3:48737362-48737381 | MS.gene24011:intron | 30.0% |
| !!! | AATCCAAATTGGTTTTAGCA+GGG | - | chr1.3:48741738-48741757 | None:intergenic | 30.0% |
| !!! | ACTTTTAAGTTAACAGTGCA+AGG | - | chr1.3:48740812-48740831 | None:intergenic | 30.0% |
| !!! | TAATCCAAATTGGTTTTAGC+AGG | - | chr1.3:48741739-48741758 | None:intergenic | 30.0% |
| !!! | TTTTTTATGAGCACGAGAAA+TGG | + | chr1.3:48742083-48742102 | MS.gene24011:intron | 30.0% |
| AAACCTGATTGTAAAACTGC+AGG | - | chr1.3:48740629-48740648 | None:intergenic | 35.0% | |
| AAACTCACTTTACAAGCCAT+GGG | - | chr1.3:48739055-48739074 | None:intergenic | 35.0% | |
| AACAACCAAAATTGAGTAGC+TGG | - | chr1.3:48738917-48738936 | None:intergenic | 35.0% | |
| AACAATAGAAAAGGGGAGAT+GGG | - | chr1.3:48739493-48739512 | None:intergenic | 35.0% | |
| AACAGCAATTATTTCCCCAT+TGG | - | chr1.3:48739618-48739637 | None:intergenic | 35.0% | |
| AACTGTGTTTGCAGTGAAAT+GGG | + | chr1.3:48741147-48741166 | MS.gene24011:intron | 35.0% | |
| AAGCATGCTAAGCATATGTA+TGG | - | chr1.3:48737682-48737701 | None:intergenic | 35.0% | |
| ACAAATTCACAGTCGACAAA+AGG | - | chr1.3:48738061-48738080 | None:intergenic | 35.0% | |
| ACACTATATCAATCACATGC+TGG | - | chr1.3:48740948-48740967 | None:intergenic | 35.0% | |
| ACATTTGTGACAAAAACAGC+CGG | - | chr1.3:48740083-48740102 | None:intergenic | 35.0% | |
| ACCTGAGCAGTTAAAAGATA+TGG | - | chr1.3:48739889-48739908 | None:intergenic | 35.0% | |
| AGATTGCCAAAATCAGTTAC+AGG | - | chr1.3:48740680-48740699 | None:intergenic | 35.0% | |
| ATAATGTGTTAATCGGCTAC+AGG | + | chr1.3:48739347-48739366 | MS.gene24011:intron | 35.0% | |
| ATCAAGTAATGTATGAGCTC+CGG | + | chr1.3:48741316-48741335 | MS.gene24011:CDS | 35.0% | |
| ATCAGATATGGAACTTGTCA+GGG | + | chr1.3:48743447-48743466 | MS.gene24011:CDS | 35.0% | |
| ATCTACCACATGGTGAAAAA+TGG | - | chr1.3:48741176-48741195 | None:intergenic | 35.0% | |
| ATGCTAAGCATATGTATGGT+GGG | - | chr1.3:48737678-48737697 | None:intergenic | 35.0% | |
| ATTACAAACTCTTGTACACC+AGG | + | chr1.3:48741248-48741267 | MS.gene24011:CDS | 35.0% | |
| ATTACTTGATGTGCTGAGAT+TGG | - | chr1.3:48741306-48741325 | None:intergenic | 35.0% | |
| CAAATCTTAGATCCGATTCA+AGG | - | chr1.3:48738588-48738607 | None:intergenic | 35.0% | |
| CAACAAGTAGGCACTATTTA+TGG | + | chr1.3:48743250-48743269 | MS.gene24011:intron | 35.0% | |
| CAGTATTTGTGTTGAAGACA+AGG | + | chr1.3:48739824-48739843 | MS.gene24011:CDS | 35.0% | |
| CATGAGTACTTCTATGAAAG+AGG | + | chr1.3:48739162-48739181 | MS.gene24011:intron | 35.0% | |
| CTTGTCTTCAACACAAATAC+TGG | - | chr1.3:48739826-48739845 | None:intergenic | 35.0% | |
| GATAGGTTCATAACTTCAGA+AGG | - | chr1.3:48740916-48740935 | None:intergenic | 35.0% | |
| GTCACACTATCAAGCATTTA+TGG | - | chr1.3:48737524-48737543 | None:intergenic | 35.0% | |
| TAACAATAGAAAAGGGGAGA+TGG | - | chr1.3:48739494-48739513 | None:intergenic | 35.0% | |
| TACAGTCTTGGAGGTAAAAA+TGG | + | chr1.3:48742867-48742886 | MS.gene24011:intron | 35.0% | |
| TACATACCCGTCCTAATAAA+AGG | + | chr1.3:48738736-48738755 | MS.gene24011:intron | 35.0% | |
| TATCAGATATGGAACTTGTC+AGG | + | chr1.3:48743446-48743465 | MS.gene24011:CDS | 35.0% | |
| TCACCAAAGGTTATAACACA+TGG | - | chr1.3:48739692-48739711 | None:intergenic | 35.0% | |
| TCATGCGGCAAATTAATAGA+AGG | - | chr1.3:48740707-48740726 | None:intergenic | 35.0% | |
| TCTACCACATGGTGAAAAAT+GGG | - | chr1.3:48741175-48741194 | None:intergenic | 35.0% | |
| TGAAACTGGAAATTGCTTGA+AGG | + | chr1.3:48738374-48738393 | MS.gene24011:CDS | 35.0% | |
| TGAGGACTAAAAATGAAAGC+AGG | - | chr1.3:48741653-48741672 | None:intergenic | 35.0% | |
| TGCCATTCACATTACAAGTA+CGG | - | chr1.3:48743658-48743677 | None:intergenic | 35.0% | |
| TGGTTATTAATTCTCAGGGT+TGG | + | chr1.3:48737266-48737285 | MS.gene24011:intron | 35.0% | |
| TGTACAAGAGTTTGTAATCC+TGG | - | chr1.3:48741246-48741265 | None:intergenic | 35.0% | |
| ! | AAATGTTTGGAGTGACTTTG+TGG | + | chr1.3:48741089-48741108 | MS.gene24011:intron | 35.0% |
| ! | ACTAACCAGCTACTCAATTT+TGG | + | chr1.3:48738909-48738928 | MS.gene24011:intron | 35.0% |
| ! | ATACCTGCAGTTTTACAATC+AGG | + | chr1.3:48740623-48740642 | MS.gene24011:CDS | 35.0% |
| ! | GAAATAATTGCTGTTGCATC+AGG | + | chr1.3:48739623-48739642 | MS.gene24011:CDS | 35.0% |
| ! | GCGTGCAGGAAAATTTTATA+GGG | + | chr1.3:48742041-48742060 | MS.gene24011:intron | 35.0% |
| ! | TCATTTAGAATATCCTCCAC+CGG | + | chr1.3:48740061-48740080 | MS.gene24011:CDS | 35.0% |
| ! | TGCGTGCAGGAAAATTTTAT+AGG | + | chr1.3:48742040-48742059 | MS.gene24011:intron | 35.0% |
| ! | TTGCATTCAAAAGCATACCT+TGG | - | chr1.3:48743548-48743567 | None:intergenic | 35.0% |
| ! | TTTCGTACATGCTTGTTTCT+AGG | - | chr1.3:48737895-48737914 | None:intergenic | 35.0% |
| ! | TTTTAGCAGGGACTAAAACT+GGG | - | chr1.3:48741726-48741745 | None:intergenic | 35.0% |
| !! | ACCATATCTTTTAACTGCTC+AGG | + | chr1.3:48739885-48739904 | MS.gene24011:CDS | 35.0% |
| !! | CGTTTACCTGTAACTGATTT+TGG | + | chr1.3:48740671-48740690 | MS.gene24011:CDS | 35.0% |
| !! | CTATTAATTTGCCGCATGAT+GGG | + | chr1.3:48740708-48740727 | MS.gene24011:CDS | 35.0% |
| !! | CTGAAAAGCATTGTCATTGA+TGG | + | chr1.3:48742823-48742842 | MS.gene24011:CDS | 35.0% |
| !! | TCTATTAATTTGCCGCATGA+TGG | + | chr1.3:48740707-48740726 | MS.gene24011:CDS | 35.0% |
| !!! | ATGGAAGTTGGTGATTTTGT+AGG | + | chr1.3:48742102-48742121 | MS.gene24011:intron | 35.0% |
| !!! | TGGAAGTTGGTGATTTTGTA+GGG | + | chr1.3:48742103-48742122 | MS.gene24011:intron | 35.0% |
| AAGGTAGAACATGTCACCAA+AGG | - | chr1.3:48739705-48739724 | None:intergenic | 40.0% | |
| AATTCAACTCTTGACACTGG+TGG | - | chr1.3:48740140-48740159 | None:intergenic | 40.0% | |
| AATTGCAACTTACTGTGTGG+AGG | - | chr1.3:48738248-48738267 | None:intergenic | 40.0% | |
| ACAAACACTAAGACTGTGCT+AGG | - | chr1.3:48739307-48739326 | None:intergenic | 40.0% | |
| ACAAGCCATGGGAAATAACA+TGG | - | chr1.3:48739044-48739063 | None:intergenic | 40.0% | |
| ACTAACCATCCTTGCAGAAA+AGG | - | chr1.3:48740473-48740492 | None:intergenic | 40.0% | |
| ACTTGGCGTTAGAGATTACA+GGG | - | chr1.3:48739216-48739235 | None:intergenic | 40.0% | |
| ACTTGTAATGTGAATGGCAC+TGG | + | chr1.3:48743659-48743678 | MS.gene24011:CDS | 40.0% | |
| AGCAGAATATGCTCAGATGT+AGG | - | chr1.3:48742775-48742794 | None:intergenic | 40.0% | |
| AGGCAATAAAGGGCAATACT+TGG | - | chr1.3:48738173-48738192 | None:intergenic | 40.0% | |
| AGTCCCTGCTAAAACCAATT+TGG | + | chr1.3:48741732-48741751 | MS.gene24011:intron | 40.0% | |
| AGTTGTGTAAGTACCATGAG+AGG | - | chr1.3:48737996-48738015 | None:intergenic | 40.0% | |
| ATCAATAACCTCACAATGGG+TGG | + | chr1.3:48740308-48740327 | MS.gene24011:CDS | 40.0% | |
| ATCAGGACATATGCCTAGAA+CGG | - | chr1.3:48739271-48739290 | None:intergenic | 40.0% | |
| ATGGCCATTATATTCTGCTC+CGG | - | chr1.3:48740258-48740277 | None:intergenic | 40.0% | |
| CAAACCGGAGCAGAATATAA+TGG | + | chr1.3:48740251-48740270 | MS.gene24011:CDS | 40.0% | |
| CAAACTCACTTTACAAGCCA+TGG | - | chr1.3:48739056-48739075 | None:intergenic | 40.0% | |
| CAAAGGTTATAACACATGGC+AGG | - | chr1.3:48739688-48739707 | None:intergenic | 40.0% | |
| CAACTGTGTTTGCAGTGAAA+TGG | + | chr1.3:48741146-48741165 | MS.gene24011:intron | 40.0% | |
| CAATTATTTCCCCATTGGCA+TGG | - | chr1.3:48739613-48739632 | None:intergenic | 40.0% | |
| CAGAATATGAGAACCGTTCT+AGG | + | chr1.3:48739255-48739274 | MS.gene24011:intron | 40.0% | |
| CATCCATTAGAATCTGGTGA+CGG | - | chr1.3:48740443-48740462 | None:intergenic | 40.0% | |
| CATCCCATAAACGAACTTCT+TGG | - | chr1.3:48739422-48739441 | None:intergenic | 40.0% | |
| CATGCTAAGCATATGTATGG+TGG | - | chr1.3:48737679-48737698 | None:intergenic | 40.0% | |
| CATTACAAGTACGGTCAAAC+TGG | - | chr1.3:48743649-48743668 | None:intergenic | 40.0% | |
| CGACATGTGGTATAGTTAGA+CGG | - | chr1.3:48740880-48740899 | None:intergenic | 40.0% | |
| CGCACACACACATATACAAA+AGG | + | chr1.3:48742554-48742573 | MS.gene24011:intron | 40.0% | |
| CTCGTGCTCATAAAAAAAGG+TGG | - | chr1.3:48742080-48742099 | None:intergenic | 40.0% | |
| CTGCCATGTGTTATAACCTT+TGG | + | chr1.3:48739686-48739705 | MS.gene24011:intron | 40.0% | |
| GACCGTACTTGTAATGTGAA+TGG | + | chr1.3:48743653-48743672 | MS.gene24011:CDS | 40.0% | |
| GGAAAATTCATACCTGGTGT+TGG | - | chr1.3:48737007-48737026 | None:intergenic | 40.0% | |
| GGACCAAGAAGTTCGTTTAT+GGG | + | chr1.3:48739416-48739435 | MS.gene24011:CDS | 40.0% | |
| GGCATCAATAACCTCACAAT+GGG | + | chr1.3:48740305-48740324 | MS.gene24011:CDS | 40.0% | |
| GTGAAAGAACCAATCTGTTG+AGG | - | chr1.3:48740530-48740549 | None:intergenic | 40.0% | |
| GTGGCACTACAAAAATGCAA+GGG | + | chr1.3:48739789-48739808 | MS.gene24011:CDS | 40.0% | |
| GTTGTAGGAAGGAAAGCTTA+GGG | + | chr1.3:48743619-48743638 | MS.gene24011:intron | 40.0% | |
| TAACCCATGTCTCCTTGAAT+CGG | + | chr1.3:48738573-48738592 | MS.gene24011:intron | 40.0% | |
| TATAACACATGGCAGGTTCT+CGG | - | chr1.3:48739681-48739700 | None:intergenic | 40.0% | |
| TCAATGCTTCCTCAACAGAT+TGG | + | chr1.3:48740518-48740537 | MS.gene24011:CDS | 40.0% | |
| TCCAATTGCAACTTACTGTG+TGG | - | chr1.3:48738251-48738270 | None:intergenic | 40.0% | |
| TCCACACAGTAAGTTGCAAT+TGG | + | chr1.3:48738247-48738266 | MS.gene24011:intron | 40.0% | |
| TGCAATTCAACTCTTGACAC+TGG | - | chr1.3:48740143-48740162 | None:intergenic | 40.0% | |
| TGGACCAAGAAGTTCGTTTA+TGG | + | chr1.3:48739415-48739434 | MS.gene24011:CDS | 40.0% | |
| TGGCATCAATAACCTCACAA+TGG | + | chr1.3:48740304-48740323 | MS.gene24011:CDS | 40.0% | |
| TGTGGCACTACAAAAATGCA+AGG | + | chr1.3:48739788-48739807 | MS.gene24011:CDS | 40.0% | |
| TTAGACGGCATCTTTGTAGT+GGG | - | chr1.3:48740865-48740884 | None:intergenic | 40.0% | |
| TTCACAATAAACAAGGTGGG+TGG | - | chr1.3:48737758-48737777 | None:intergenic | 40.0% | |
| TTCAGATTGCTCAATGACAG+AGG | + | chr1.3:48740025-48740044 | MS.gene24011:CDS | 40.0% | |
| TTCTAGGCATATGTCCTGAT+GGG | + | chr1.3:48739271-48739290 | MS.gene24011:intron | 40.0% | |
| TTGTCACAAATGTTCATCCC+AGG | + | chr1.3:48740090-48740109 | MS.gene24011:CDS | 40.0% | |
| TTTCTGCAAGGATGGTTAGT+CGG | + | chr1.3:48740473-48740492 | MS.gene24011:CDS | 40.0% | |
| ! | AAATTTGATTTCCAGGGTCG+AGG | + | chr1.3:48738123-48738142 | MS.gene24011:intron | 40.0% |
| ! | AACGACAGATACTTGCTAGT+GGG | + | chr1.3:48739388-48739407 | MS.gene24011:CDS | 40.0% |
| ! | AGCATGCAGGTTGAACAATA+CGG | + | chr1.3:48740191-48740210 | MS.gene24011:CDS | 40.0% |
| ! | ATACCTGGTGTTGGAATTCT+GGG | - | chr1.3:48736998-48737017 | None:intergenic | 40.0% |
| ! | ATGCTTTCATCCTTTTCCTG+GGG | + | chr1.3:48743504-48743523 | MS.gene24011:CDS | 40.0% |
| ! | ATTCAAGGAGACATGGGTTA+TGG | - | chr1.3:48738573-48738592 | None:intergenic | 40.0% |
| ! | CATGATCAGCGTTTTCATGT+TGG | - | chr1.3:48740370-48740389 | None:intergenic | 40.0% |
| ! | CATGCTTTCATCCTTTTCCT+GGG | + | chr1.3:48743503-48743522 | MS.gene24011:CDS | 40.0% |
| ! | CTCTAGGAAAGTCAATTACG+AGG | + | chr1.3:48738088-48738107 | MS.gene24011:intron | 40.0% |
| ! | GGAATTTTCCATGGAATCAG+CGG | + | chr1.3:48736936-48736955 | MS.gene24011:CDS | 40.0% |
| ! | GTCACCAGATTCTAATGGAT+GGG | + | chr1.3:48740442-48740461 | MS.gene24011:CDS | 40.0% |
| ! | TGTTTAGTTGTTGTGTTGGC+TGG | + | chr1.3:48743281-48743300 | MS.gene24011:intron | 40.0% |
| ! | TTCAAGGAGACATGGGTTAT+GGG | - | chr1.3:48738572-48738591 | None:intergenic | 40.0% |
| ! | TTGAACTTAGCTTGAGGGTT+AGG | + | chr1.3:48737399-48737418 | MS.gene24011:intron | 40.0% |
| !! | AATCTGTTGAGGAAGCATTG+AGG | - | chr1.3:48740519-48740538 | None:intergenic | 40.0% |
| !! | AGCAGGTAATTTTCAAGGGA+CGG | - | chr1.3:48741636-48741655 | None:intergenic | 40.0% |
| !! | ATCTGTTGAGGAAGCATTGA+GGG | - | chr1.3:48740518-48740537 | None:intergenic | 40.0% |
| !! | GTTTTAGCAGGGACTAAAAC+TGG | - | chr1.3:48741727-48741746 | None:intergenic | 40.0% |
| !! | TTGGTGGTGAACAGATTAGA+TGG | - | chr1.3:48740557-48740576 | None:intergenic | 40.0% |
| !!! | GTTTTCATGTTGGCTTGCTT+CGG | - | chr1.3:48740360-48740379 | None:intergenic | 40.0% |
| AAAAGATATGGTGCCCCATG+CGG | - | chr1.3:48739877-48739896 | None:intergenic | 45.0% | |
| AACTGACCTGGATTGAAGTC+AGG | - | chr1.3:48741519-48741538 | None:intergenic | 45.0% | |
| ACAGTGGTAGATGCAAAGTG+TGG | + | chr1.3:48737967-48737986 | MS.gene24011:CDS | 45.0% | |
| ACTATGGGCACAAAACCACT+TGG | - | chr1.3:48739233-48739252 | None:intergenic | 45.0% | |
| ACTCCAATCATGTTCTCCTC+AGG | - | chr1.3:48743698-48743717 | None:intergenic | 45.0% | |
| AGATCCGATTCAAGGAGACA+TGG | - | chr1.3:48738580-48738599 | None:intergenic | 45.0% | |
| AGCTCCCATCCATTAGAATC+TGG | - | chr1.3:48740449-48740468 | None:intergenic | 45.0% | |
| AGGTATTAGTTGGCCACAGA+AGG | + | chr1.3:48738394-48738413 | MS.gene24011:CDS | 45.0% | |
| ATAACCTCACAATGGGTGGT+AGG | + | chr1.3:48740312-48740331 | MS.gene24011:CDS | 45.0% | |
| ATGACAGAGGCAACATCTCA+TGG | + | chr1.3:48740038-48740057 | MS.gene24011:CDS | 45.0% | |
| CACTTGGCGTTAGAGATTAC+AGG | - | chr1.3:48739217-48739236 | None:intergenic | 45.0% | |
| CAGCATGCTAGTAACGATGT+TGG | + | chr1.3:48740161-48740180 | MS.gene24011:CDS | 45.0% | |
| CATGCTGGAGCAGATATGAT+AGG | - | chr1.3:48740933-48740952 | None:intergenic | 45.0% | |
| CCAGAAGACGAGCCAATTTA+TGG | + | chr1.3:48738851-48738870 | MS.gene24011:intron | 45.0% | |
| CCATATTTGGATCGATGTGC+AGG | + | chr1.3:48739986-48740005 | MS.gene24011:intron | 45.0% | |
| CCTGCACATCGATCCAAATA+TGG | - | chr1.3:48739989-48740008 | None:intergenic | 45.0% | |
| CGTCACCAGATTCTAATGGA+TGG | + | chr1.3:48740441-48740460 | MS.gene24011:CDS | 45.0% | |
| CTCCAATCATGTTCTCCTCA+GGG | - | chr1.3:48743697-48743716 | None:intergenic | 45.0% | |
| CTGCAGCATTTAGTCCAGAT+GGG | + | chr1.3:48738212-48738231 | MS.gene24011:CDS | 45.0% | |
| CTGTAATCTCTAACGCCAAG+TGG | + | chr1.3:48739215-48739234 | MS.gene24011:intron | 45.0% | |
| CTTCCTCCAGGGAATATATC+CGG | - | chr1.3:48741338-48741357 | None:intergenic | 45.0% | |
| GATCCGATTCAAGGAGACAT+GGG | - | chr1.3:48738579-48738598 | None:intergenic | 45.0% | |
| GCAAGTATCTGTCGTTGCAA+TGG | - | chr1.3:48739384-48739403 | None:intergenic | 45.0% | |
| GCGGCTAAAAATCTACCACA+TGG | - | chr1.3:48741186-48741205 | None:intergenic | 45.0% | |
| GGAAAGCGAGAGATGCAATA+GGG | - | chr1.3:48739592-48739611 | None:intergenic | 45.0% | |
| GGTTGTAGGAAGGAAAGCTT+AGG | + | chr1.3:48743618-48743637 | MS.gene24011:intron | 45.0% | |
| GTATCTGTCGTTGCAATGGA+TGG | - | chr1.3:48739380-48739399 | None:intergenic | 45.0% | |
| GTCAGAACTTGCCAAATCAG+TGG | + | chr1.3:48740763-48740782 | MS.gene24011:CDS | 45.0% | |
| GTGTTAATCGGCTACAGGTT+AGG | + | chr1.3:48739352-48739371 | MS.gene24011:intron | 45.0% | |
| GTTAGACGGCATCTTTGTAG+TGG | - | chr1.3:48740866-48740885 | None:intergenic | 45.0% | |
| GTTCCGTCACCAGATTCTAA+TGG | + | chr1.3:48740437-48740456 | MS.gene24011:CDS | 45.0% | |
| TAACCTCACAATGGGTGGTA+GGG | + | chr1.3:48740313-48740332 | MS.gene24011:CDS | 45.0% | |
| TAATTCTGTAGCAGCTGCAG+TGG | - | chr1.3:48740789-48740808 | None:intergenic | 45.0% | |
| TACTGTGTCAGTTGTACGTG+TGG | + | chr1.3:48739770-48739789 | MS.gene24011:intron | 45.0% | |
| TAGACGGCATCTTTGTAGTG+GGG | - | chr1.3:48740864-48740883 | None:intergenic | 45.0% | |
| TCAGTTACAGGTAAACGGGA+TGG | - | chr1.3:48740668-48740687 | None:intergenic | 45.0% | |
| TCATTGCCTGACTTCAATCC+AGG | + | chr1.3:48741510-48741529 | MS.gene24011:CDS | 45.0% | |
| TGAGCACGAGAAATGGAAGT+TGG | + | chr1.3:48742090-48742109 | MS.gene24011:intron | 45.0% | |
| TGGAAAGCGAGAGATGCAAT+AGG | - | chr1.3:48739593-48739612 | None:intergenic | 45.0% | |
| TGGCTATCAAACCCATCATG+CGG | - | chr1.3:48740722-48740741 | None:intergenic | 45.0% | |
| TTAGTCGGTCAAAGCCAAGT+TGG | + | chr1.3:48740488-48740507 | MS.gene24011:CDS | 45.0% | |
| TTCCCTGAGGAGAACATGAT+TGG | + | chr1.3:48743692-48743711 | MS.gene24011:CDS | 45.0% | |
| TTGTATATGTGTGTGTGCGC+AGG | - | chr1.3:48742553-48742572 | None:intergenic | 45.0% | |
| TTTGTGACAAAAACAGCCGG+TGG | - | chr1.3:48740080-48740099 | None:intergenic | 45.0% | |
| ! | AATGTGAATGGCACTGGATC+TGG | + | chr1.3:48743665-48743684 | MS.gene24011:CDS | 45.0% |
| ! | AGGCAATGAGCAGCTCTAAT+TGG | - | chr1.3:48741499-48741518 | None:intergenic | 45.0% |
| ! | ATACCCACTAGCTCTCAAAC+CGG | + | chr1.3:48740236-48740255 | MS.gene24011:CDS | 45.0% |
| ! | CAACGACAGATACTTGCTAG+TGG | + | chr1.3:48739387-48739406 | MS.gene24011:CDS | 45.0% |
| ! | CATACCTGGTGTTGGAATTC+TGG | - | chr1.3:48736999-48737018 | None:intergenic | 45.0% |
| ! | CGCTAGTGTAGCTCTACTAT+AGG | - | chr1.3:48738715-48738734 | None:intergenic | 45.0% |
| ! | GAGGCAAGAATTTTCCCATC+TGG | - | chr1.3:48738229-48738248 | None:intergenic | 45.0% |
| ! | GATACTTGCTAGTGGGAGTT+TGG | + | chr1.3:48739395-48739414 | MS.gene24011:CDS | 45.0% |
| ! | GATTGATAACCCTTTGCTCG+TGG | + | chr1.3:48743594-48743613 | MS.gene24011:intron | 45.0% |
| ! | GCATGCTTTCATCCTTTTCC+TGG | + | chr1.3:48743502-48743521 | MS.gene24011:CDS | 45.0% |
| ! | GTTCTAGGCATATGTCCTGA+TGG | + | chr1.3:48739270-48739289 | MS.gene24011:intron | 45.0% |
| ! | TAGGATTTGAAGCACCCATC+AGG | - | chr1.3:48739288-48739307 | None:intergenic | 45.0% |
| ! | TAGGGAATAAAAGTGCGTGC+AGG | + | chr1.3:48742027-48742046 | MS.gene24011:intron | 45.0% |
| ! | TGCTTTCATCCTTTTCCTGG+GGG | + | chr1.3:48743505-48743524 | MS.gene24011:CDS | 45.0% |
| ! | TGGACTAGAGTACATCTGAG+AGG | - | chr1.3:48741409-48741428 | None:intergenic | 45.0% |
| ! | TTGAGAGCTAGTGGGTATCT+CGG | - | chr1.3:48740234-48740253 | None:intergenic | 45.0% |
| ! | TTGGAATTCTGGGAGGATGA+GGG | - | chr1.3:48736988-48737007 | None:intergenic | 45.0% |
| !! | AACACCTCCTGAAAGTGTTG+TGG | + | chr1.3:48738545-48738564 | MS.gene24011:intron | 45.0% |
| !! | ACACCTCCTGAAAGTGTTGT+GGG | + | chr1.3:48738546-48738565 | MS.gene24011:intron | 45.0% |
| !! | AGCATGTACGAAAGTGTCAC+TGG | + | chr1.3:48737902-48737921 | MS.gene24011:CDS | 45.0% |
| !! | ATGAAGTTCCGCTGATTCCA+TGG | - | chr1.3:48736947-48736966 | None:intergenic | 45.0% |
| !! | CATGTACGAAAGTGTCACTG+GGG | + | chr1.3:48737904-48737923 | MS.gene24011:CDS | 45.0% |
| !! | CCATAAATTGGCTCGTCTTC+TGG | - | chr1.3:48738854-48738873 | None:intergenic | 45.0% |
| !! | CTGATTTGGCAAGTTCTGAC+TGG | - | chr1.3:48740763-48740782 | None:intergenic | 45.0% |
| !! | CTGTTCTCGTTCTAGAACAG+TGG | + | chr1.3:48737951-48737970 | MS.gene24011:CDS | 45.0% |
| !! | CTTGATAGTGTGACAGTCAC+AGG | + | chr1.3:48737530-48737549 | MS.gene24011:intron | 45.0% |
| !! | GCATGTACGAAAGTGTCACT+GGG | + | chr1.3:48737903-48737922 | MS.gene24011:CDS | 45.0% |
| !! | TGTTGGTTTGAGTAGCATGC+AGG | + | chr1.3:48740178-48740197 | MS.gene24011:CDS | 45.0% |
| !! | AAAATAATTCAAAAATTTAA+AGG | - | chr1.3:48741774-48741793 | None:intergenic | 5.0% |
| !! | ATAAAAAAATAAAAAAACAA+AGG | - | chr1.3:48739724-48739743 | None:intergenic | 5.0% |
| AAAGATATGGTGCCCCATGC+GGG | - | chr1.3:48739876-48739895 | None:intergenic | 50.0% | |
| AAGCCAAAGCTTACCACCCA+AGG | - | chr1.3:48738423-48738442 | None:intergenic | 50.0% | |
| AGAGCTATGACGTCGACCAT+AGG | - | chr1.3:48742800-48742819 | None:intergenic | 50.0% | |
| AGGGCTTGTCTATGGAACCA+AGG | + | chr1.3:48743528-48743547 | MS.gene24011:CDS | 50.0% | |
| AGGGTGCATACATGCAACAC+AGG | - | chr1.3:48741208-48741227 | None:intergenic | 50.0% | |
| ATATGTGTGTGTGCGCAGGA+GGG | - | chr1.3:48742549-48742568 | None:intergenic | 50.0% | |
| ATGCCATTGGGCATTCCTGA+AGG | - | chr1.3:48740599-48740618 | None:intergenic | 50.0% | |
| CAAAGTGTGGTCTCCTCTCA+TGG | + | chr1.3:48737980-48737999 | MS.gene24011:CDS | 50.0% | |
| CACAGCTAGCTCAACATTGG+TGG | - | chr1.3:48740573-48740592 | None:intergenic | 50.0% | |
| CTACAACCACCACGAGCAAA+GGG | - | chr1.3:48743606-48743625 | None:intergenic | 50.0% | |
| CTCAGGTGAGTGAACTGACT+TGG | + | chr1.3:48739902-48739921 | MS.gene24011:intron | 50.0% | |
| CTCTCGCTTTCCATGCCAAT+GGG | + | chr1.3:48739600-48739619 | MS.gene24011:CDS | 50.0% | |
| CTGCAGCAATAGTAGACCGT+GGG | - | chr1.3:48738198-48738217 | None:intergenic | 50.0% | |
| GACATGTTGATCTGCGTCCT+GGG | - | chr1.3:48740110-48740129 | None:intergenic | 50.0% | |
| GAGCATATTCTGCTCGCCTA+TGG | + | chr1.3:48742781-48742800 | MS.gene24011:CDS | 50.0% | |
| GCAGGTATGCTGATGCCATT+GGG | - | chr1.3:48740611-48740630 | None:intergenic | 50.0% | |
| GCATTGAGGGAACACCAACT+TGG | - | chr1.3:48740505-48740524 | None:intergenic | 50.0% | |
| GCTGAGATTGGATGTCGAGT+TGG | - | chr1.3:48741294-48741313 | None:intergenic | 50.0% | |
| GCTGCAGCATTTAGTCCAGA+TGG | + | chr1.3:48738211-48738230 | MS.gene24011:CDS | 50.0% | |
| GGGCGCAGGAAAATACTGTA+AGG | - | chr1.3:48741706-48741725 | None:intergenic | 50.0% | |
| GTGCATACATGCAACACAGG+CGG | - | chr1.3:48741205-48741224 | None:intergenic | 50.0% | |
| TATATGTGTGTGTGCGCAGG+AGG | - | chr1.3:48742550-48742569 | None:intergenic | 50.0% | |
| TATGGGCCCACAACACTTTC+AGG | - | chr1.3:48738555-48738574 | None:intergenic | 50.0% | |
| TCTCGCTTTCCATGCCAATG+GGG | + | chr1.3:48739601-48739620 | MS.gene24011:CDS | 50.0% | |
| TCTCTCGCTTTCCATGCCAA+TGG | + | chr1.3:48739599-48739618 | MS.gene24011:CDS | 50.0% | |
| TGACATGTTGATCTGCGTCC+TGG | - | chr1.3:48740111-48740130 | None:intergenic | 50.0% | |
| TGAGCTCCGGATATATTCCC+TGG | + | chr1.3:48741329-48741348 | MS.gene24011:CDS | 50.0% | |
| TGATAACCCTTTGCTCGTGG+TGG | + | chr1.3:48743597-48743616 | MS.gene24011:intron | 50.0% | |
| TGCAGAGGATGAGGTCAATG+TGG | + | chr1.3:48743480-48743499 | MS.gene24011:CDS | 50.0% | |
| TGCAGCAATAGTAGACCGTG+GGG | - | chr1.3:48738197-48738216 | None:intergenic | 50.0% | |
| TGCAGGTATGCTGATGCCAT+TGG | - | chr1.3:48740612-48740631 | None:intergenic | 50.0% | |
| TGCTGTTGCATCAGGTCACA+AGG | + | chr1.3:48739631-48739650 | MS.gene24011:CDS | 50.0% | |
| TGGATCTGGTTACTTCCCTG+AGG | + | chr1.3:48743679-48743698 | MS.gene24011:CDS | 50.0% | |
| TGGCACAGCTAGCTCAACAT+TGG | - | chr1.3:48740576-48740595 | None:intergenic | 50.0% | |
| ! | AGCTGCCTTTTCTGCAAGGA+TGG | + | chr1.3:48740465-48740484 | MS.gene24011:CDS | 50.0% |
| ! | CTGTGCATTTTCACCCGCAT+GGG | + | chr1.3:48739860-48739879 | MS.gene24011:CDS | 50.0% |
| ! | GAGGGTTGATCATGACACAG+AGG | - | chr1.3:48736970-48736989 | None:intergenic | 50.0% |
| ! | GCTTTCTAGTGCAGAGGATG+AGG | + | chr1.3:48743471-48743490 | MS.gene24011:CDS | 50.0% |
| ! | GTTGGAATTCTGGGAGGATG+AGG | - | chr1.3:48736989-48737008 | None:intergenic | 50.0% |
| ! | TGTGCATTTTCACCCGCATG+GGG | + | chr1.3:48739861-48739880 | MS.gene24011:CDS | 50.0% |
| ! | TGTGCTTTTGGCATGTGCAG+TGG | + | chr1.3:48738324-48738343 | MS.gene24011:intron | 50.0% |
| ! | TTCATCCTTTTCCTGGGGGA+GGG | + | chr1.3:48743509-48743528 | MS.gene24011:CDS | 50.0% |
| ! | TTTCATCCTTTTCCTGGGGG+AGG | + | chr1.3:48743508-48743527 | MS.gene24011:CDS | 50.0% |
| !! | ACTTCAGAAGGTACCTGCAG+AGG | - | chr1.3:48740904-48740923 | None:intergenic | 50.0% |
| !! | GGATGTCGAGTTGGTGATGT+TGG | - | chr1.3:48741285-48741304 | None:intergenic | 50.0% |
| !! | GGTGCCCATTTTTCACCATG+TGG | + | chr1.3:48741168-48741187 | MS.gene24011:CDS | 50.0% |
| !! | GTTGGTGATGTTGGAAGTCC+AGG | - | chr1.3:48741276-48741295 | None:intergenic | 50.0% |
| !! | TCTGGTGACGGAACAATCTG+AGG | - | chr1.3:48740431-48740450 | None:intergenic | 50.0% |
| ACCGTGGGGCAGGCAATAAA+GGG | - | chr1.3:48738183-48738202 | None:intergenic | 55.0% | |
| ACGCCTTGGGTGGTAAGCTT+TGG | + | chr1.3:48738417-48738436 | MS.gene24011:intron | 55.0% | |
| ACTCTTGTACACCAGGAGCC+TGG | + | chr1.3:48741255-48741274 | MS.gene24011:CDS | 55.0% | |
| AGGAGGGAGGGACAGAGATA+TGG | - | chr1.3:48742533-48742552 | None:intergenic | 55.0% | |
| AGTCGTACGTTGCTTCCTCC+AGG | - | chr1.3:48741350-48741369 | None:intergenic | 55.0% | |
| ATGTTGGAAGTCCAGGCTCC+TGG | - | chr1.3:48741269-48741288 | None:intergenic | 55.0% | |
| CCACCTTCAGGAATGCCCAA+TGG | + | chr1.3:48740593-48740612 | MS.gene24011:CDS | 55.0% | |
| CCATTGGGCATTCCTGAAGG+TGG | - | chr1.3:48740596-48740615 | None:intergenic | 55.0% | |
| CCTACAACCACCACGAGCAA+AGG | - | chr1.3:48743607-48743626 | None:intergenic | 55.0% | |
| CCTCCCAGAATTCCAACACC+AGG | + | chr1.3:48736992-48737011 | MS.gene24011:CDS | 55.0% | |
| CCTTTGCTCGTGGTGGTTGT+AGG | + | chr1.3:48743604-48743623 | MS.gene24011:intron | 55.0% | |
| CGCGTTGAACTCTCTGAGCT+TGG | + | chr1.3:48740398-48740417 | MS.gene24011:CDS | 55.0% | |
| GCTCCGGATATATTCCCTGG+AGG | + | chr1.3:48741332-48741351 | MS.gene24011:CDS | 55.0% | |
| GCTGCAGCAATAGTAGACCG+TGG | - | chr1.3:48738199-48738218 | None:intergenic | 55.0% | |
| GGAGGGAGGGACAGAGATAT+GGG | - | chr1.3:48742532-48742551 | None:intergenic | 55.0% | |
| GGGATGCTAGCTCATCAGAG+TGG | + | chr1.3:48739436-48739455 | MS.gene24011:CDS | 55.0% | |
| GTCGTACGTTGCTTCCTCCA+GGG | - | chr1.3:48741349-48741368 | None:intergenic | 55.0% | |
| GTGACAAAAACAGCCGGTGG+AGG | - | chr1.3:48740077-48740096 | None:intergenic | 55.0% | |
| TACCACATGTCGTCCTCTGC+AGG | + | chr1.3:48740888-48740907 | MS.gene24011:CDS | 55.0% | |
| TACCTGCAGAGGACGACATG+TGG | - | chr1.3:48740893-48740912 | None:intergenic | 55.0% | |
| TGCTCGTGGTGGTTGTAGGA+AGG | + | chr1.3:48743608-48743627 | MS.gene24011:intron | 55.0% | |
| ! | AGCTGCAGTGGCCACTGATT+TGG | - | chr1.3:48740777-48740796 | None:intergenic | 55.0% |
| ! | CAGGGTGCTTTCTAGTGCAG+AGG | + | chr1.3:48743465-48743484 | MS.gene24011:CDS | 55.0% |
| ! | CATCTTTGTAGTGGGGCGCA+GGG | - | chr1.3:48740857-48740876 | None:intergenic | 55.0% |
| ! | CCTGGTGTTGGAATTCTGGG+AGG | - | chr1.3:48736995-48737014 | None:intergenic | 55.0% |
| ! | GCTCCGGTTTGAGAGCTAGT+GGG | - | chr1.3:48740242-48740261 | None:intergenic | 55.0% |
| ! | GCTGTGCATTTTCACCCGCA+TGG | + | chr1.3:48739859-48739878 | MS.gene24011:CDS | 55.0% |
| ! | TGAAGACAAGGCGCTCGCTA+CGG | + | chr1.3:48739836-48739855 | MS.gene24011:CDS | 55.0% |
| ! | TGCTCCGGTTTGAGAGCTAG+TGG | - | chr1.3:48740243-48740262 | None:intergenic | 55.0% |
| ! | TGGGAGCTGCCTTTTCTGCA+AGG | + | chr1.3:48740461-48740480 | MS.gene24011:CDS | 55.0% |
| !! | TCATGTTGGCTTGCTTCGGC+TGG | - | chr1.3:48740356-48740375 | None:intergenic | 55.0% |
| ACAAGCCCTCCCCCAGGAAA+AGG | - | chr1.3:48743517-48743536 | None:intergenic | 60.0% | |
| CAATGACTCAGCCTCGACCC+TGG | - | chr1.3:48738137-48738156 | None:intergenic | 60.0% | |
| CAGGGACTAAAACTGGGCGC+AGG | - | chr1.3:48741720-48741739 | None:intergenic | 60.0% | |
| CCTCACAATGGGTGGTAGGG+AGG | + | chr1.3:48740316-48740335 | MS.gene24011:CDS | 60.0% | |
| CCTCCCTACCACCCATTGTG+AGG | - | chr1.3:48740319-48740338 | None:intergenic | 60.0% | |
| GACCGTGGGGCAGGCAATAA+AGG | - | chr1.3:48738184-48738203 | None:intergenic | 60.0% | |
| GAGCTAGCTGTGCCACCTTC+AGG | + | chr1.3:48740581-48740600 | MS.gene24011:CDS | 60.0% | |
| GCAATAGTAGACCGTGGGGC+AGG | - | chr1.3:48738193-48738212 | None:intergenic | 60.0% | |
| GCCCTTTATTGCCTGCCCCA+CGG | + | chr1.3:48738179-48738198 | MS.gene24011:CDS | 60.0% | |
| GGGCCCACAACACTTTCAGG+AGG | - | chr1.3:48738552-48738571 | None:intergenic | 60.0% | |
| TGGCCACAGAAGGACGCCTT+GGG | + | chr1.3:48738404-48738423 | MS.gene24011:CDS | 60.0% | |
| TTGGCCACAGAAGGACGCCT+TGG | + | chr1.3:48738403-48738422 | MS.gene24011:CDS | 60.0% | |
| ! | GAAGACAAGGCGCTCGCTAC+GGG | + | chr1.3:48739837-48739856 | MS.gene24011:CDS | 60.0% |
| ! | GCATCTTTGTAGTGGGGCGC+AGG | - | chr1.3:48740858-48740877 | None:intergenic | 60.0% |
| CCACAGAAGGACGCCTTGGG+TGG | + | chr1.3:48738407-48738426 | MS.gene24011:CDS | 65.0% | |
| CCATAGACAAGCCCTCCCCC+AGG | - | chr1.3:48743523-48743542 | None:intergenic | 65.0% | |
| CCTGGGGGAGGGCTTGTCTA+TGG | + | chr1.3:48743520-48743539 | MS.gene24011:CDS | 65.0% | |
| GTGTGTGTGCGCAGGAGGGA+GGG | - | chr1.3:48742545-48742564 | None:intergenic | 65.0% | |
| TGTGTGTGTGCGCAGGAGGG+AGG | - | chr1.3:48742546-48742565 | None:intergenic | 65.0% | |
| ! | CCACCCAAGGCGTCCTTCTG+TGG | - | chr1.3:48738410-48738429 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48736934 | 48743727 | 48736934 | ID=MS.gene24011 |
| chr1.3 | mRNA | 48736934 | 48743727 | 48736934 | ID=MS.gene24011.t1;Parent=MS.gene24011 |
| chr1.3 | exon | 48736934 | 48737013 | 48736934 | ID=MS.gene24011.t1.exon1;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48736934 | 48737013 | 48736934 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48737849 | 48738001 | 48737849 | ID=MS.gene24011.t1.exon2;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48737849 | 48738001 | 48737849 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48738138 | 48738254 | 48738138 | ID=MS.gene24011.t1.exon3;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48738138 | 48738254 | 48738138 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48738344 | 48738428 | 48738344 | ID=MS.gene24011.t1.exon4;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48738344 | 48738428 | 48738344 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48739369 | 48739477 | 48739369 | ID=MS.gene24011.t1.exon5;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48739369 | 48739477 | 48739369 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48739585 | 48739652 | 48739585 | ID=MS.gene24011.t1.exon6;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48739585 | 48739652 | 48739585 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48739781 | 48739906 | 48739781 | ID=MS.gene24011.t1.exon7;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48739781 | 48739906 | 48739781 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48740008 | 48740909 | 48740008 | ID=MS.gene24011.t1.exon8;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48740008 | 48740909 | 48740008 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48741161 | 48741361 | 48741161 | ID=MS.gene24011.t1.exon9;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48741161 | 48741361 | 48741161 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48741471 | 48741531 | 48741471 | ID=MS.gene24011.t1.exon10;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48741471 | 48741531 | 48741471 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48742766 | 48742879 | 48742766 | ID=MS.gene24011.t1.exon11;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48742766 | 48742879 | 48742766 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48743436 | 48743549 | 48743436 | ID=MS.gene24011.t1.exon12;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48743436 | 48743549 | 48743436 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| chr1.3 | exon | 48743626 | 48743727 | 48743626 | ID=MS.gene24011.t1.exon13;Parent=MS.gene24011.t1 |
| chr1.3 | CDS | 48743626 | 48743727 | 48743626 | ID=cds.MS.gene24011.t1;Parent=MS.gene24011.t1 |
| Gene Sequence |
| Protein sequence |
