Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24016.t1 | XP_013468403.1 | 96.2 | 368 | 13 | 1 | 1 | 367 | 1 | 368 | 1.80E-197 | 698.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24016.t1 | Q8R1Q9 | 25.8 | 365 | 205 | 9 | 11 | 365 | 15 | 323 | 8.5e-18 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24016.t1 | A0A072VWJ0 | 96.2 | 368 | 13 | 1 | 1 | 367 | 1 | 368 | 1.3e-197 | 698.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051568 | MS.gene24016 | 0.820971 | 5.17E-53 | -1.69E-46 |
| MS.gene052637 | MS.gene24016 | 0.824242 | 8.98E-54 | -1.69E-46 |
| MS.gene058650 | MS.gene24016 | 0.811139 | 8.13E-51 | -1.69E-46 |
| MS.gene059030 | MS.gene24016 | 0.992422 | 3.41E-193 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24016.t1 | MTR_1g069325 | 96.196 | 368 | 13 | 1 | 1 | 367 | 1 | 368 | 0.0 | 722 |
| MS.gene24016.t1 | MTR_1g069325 | 81.522 | 368 | 16 | 2 | 1 | 367 | 1 | 317 | 0.0 | 568 |
| MS.gene24016.t1 | MTR_7g099270 | 67.131 | 359 | 118 | 0 | 9 | 367 | 6 | 364 | 0.0 | 514 |
| MS.gene24016.t1 | MTR_7g099280 | 61.853 | 367 | 140 | 0 | 1 | 367 | 45 | 411 | 7.29e-171 | 482 |
| MS.gene24016.t1 | MTR_7g099280 | 61.853 | 367 | 140 | 0 | 1 | 367 | 43 | 409 | 7.34e-171 | 482 |
| MS.gene24016.t1 | MTR_1g069320 | 65.363 | 358 | 124 | 0 | 9 | 366 | 134 | 491 | 1.14e-170 | 485 |
| MS.gene24016.t1 | MTR_7g099280 | 59.939 | 327 | 131 | 0 | 1 | 327 | 43 | 369 | 4.09e-145 | 416 |
| MS.gene24016.t1 | MTR_7g099280 | 55.586 | 367 | 126 | 1 | 1 | 367 | 53 | 382 | 6.97e-145 | 415 |
| MS.gene24016.t1 | MTR_7g099280 | 58.696 | 276 | 114 | 0 | 1 | 276 | 43 | 318 | 3.71e-115 | 339 |
| MS.gene24016.t1 | MTR_7g099280 | 59.398 | 266 | 108 | 0 | 1 | 266 | 43 | 308 | 9.87e-112 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24016.t1 | AT4G28706 | 62.921 | 356 | 132 | 0 | 11 | 366 | 45 | 400 | 9.33e-170 | 479 |
| MS.gene24016.t1 | AT4G28706 | 62.921 | 356 | 132 | 0 | 11 | 366 | 47 | 402 | 1.40e-169 | 479 |
| MS.gene24016.t1 | AT4G28706 | 62.745 | 357 | 132 | 1 | 11 | 366 | 47 | 403 | 1.15e-167 | 474 |
| MS.gene24016.t1 | AT4G28706 | 62.570 | 358 | 133 | 1 | 11 | 367 | 47 | 404 | 2.46e-167 | 474 |
| MS.gene24016.t1 | AT5G43910 | 53.678 | 367 | 165 | 2 | 1 | 366 | 1 | 363 | 2.95e-137 | 395 |
| MS.gene24016.t1 | AT5G43910 | 52.615 | 325 | 149 | 2 | 1 | 324 | 1 | 321 | 2.26e-116 | 341 |
| MS.gene24016.t1 | AT5G43910 | 50.530 | 283 | 139 | 1 | 1 | 282 | 1 | 283 | 1.80e-97 | 292 |
| MS.gene24016.t1 | AT5G43910 | 50.178 | 281 | 139 | 1 | 1 | 280 | 1 | 281 | 4.26e-97 | 290 |
| MS.gene24016.t1 | AT5G43910 | 50.903 | 277 | 135 | 1 | 1 | 276 | 1 | 277 | 6.15e-97 | 290 |
Find 91 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTAAGATGGATATATTT+TGG | 0.178686 | 1.3:+48698266 | None:intergenic |
| CTATTCTTGGTGTCTGGTTT+TGG | 0.209515 | 1.3:+48701548 | None:intergenic |
| GAATTGAGTGGTTCTATTCT+TGG | 0.228607 | 1.3:+48701535 | None:intergenic |
| GTATGTGGGAGGTTATATTT+TGG | 0.242581 | 1.3:-48697147 | MS.gene24016:CDS |
| AAAACCTTAGAAATTATTCT+TGG | 0.273984 | 1.3:+48699493 | None:intergenic |
| TAAATTTGTGATTGCAACTT+TGG | 0.288479 | 1.3:-48697982 | MS.gene24016:CDS |
| AAAGCCAAGAATAATTTCTA+AGG | 0.303177 | 1.3:-48699497 | MS.gene24016:intron |
| GTTGACTTGTGCTGCTCGTT+TGG | 0.315907 | 1.3:-48699524 | MS.gene24016:CDS |
| CAGGTTGGGTTTGGTGGCGT+TGG | 0.319074 | 1.3:-48701602 | MS.gene24016:CDS |
| GGAAGGATTGAATGACCTTC+TGG | 0.319125 | 1.3:-48698227 | MS.gene24016:CDS |
| TTTGTGTGGCAGGTTGGGTT+TGG | 0.343196 | 1.3:-48701611 | MS.gene24016:intron |
| TTGACTTGTGCTGCTCGTTT+GGG | 0.347544 | 1.3:-48699523 | MS.gene24016:CDS |
| TTAATAAAGTATGCCAGGTT+TGG | 0.355803 | 1.3:+48696363 | None:intergenic |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 1.3:+48698580 | None:intergenic |
| TCAATAATAATGTAGCTAAA+TGG | 0.361983 | 1.3:+48699050 | None:intergenic |
| AGCACAAGTCAACGCATTTC+CGG | 0.383878 | 1.3:+48699534 | None:intergenic |
| GTGGTTCTATTCTTGGTGTC+TGG | 0.388614 | 1.3:+48701542 | None:intergenic |
| AAATTTGTGATTGCAACTTT+GGG | 0.399648 | 1.3:-48697981 | MS.gene24016:CDS |
| AGGTTTGGATCAGTGCGATA+TGG | 0.407682 | 1.3:+48696378 | None:intergenic |
| GCAATCACAAATTTAAGTCT+TGG | 0.419317 | 1.3:+48697990 | None:intergenic |
| GTGTGGCAGGTTGGGTTTGG+TGG | 0.423838 | 1.3:-48701608 | MS.gene24016:intron |
| TGTGGATACTTCTTCATTTG+TGG | 0.428757 | 1.3:-48699339 | MS.gene24016:intron |
| ATTGAATGACCTTCTGGACT+TGG | 0.430538 | 1.3:-48698221 | MS.gene24016:CDS |
| CCTTTCAGCATCAACTAAGA+TGG | 0.434238 | 1.3:+48698255 | None:intergenic |
| TTTGCACGCGAAAGATCTTC+CGG | 0.437545 | 1.3:+48698635 | None:intergenic |
| GGTGCTGGGGATGCATTTGT+TGG | 0.438231 | 1.3:-48697081 | MS.gene24016:CDS |
| GCAATGACAAGAGCAGTTGC+AGG | 0.440063 | 1.3:+48698560 | None:intergenic |
| AGAATTGAAACTAGTGCTCT+TGG | 0.449446 | 1.3:+48698023 | None:intergenic |
| GAATAGAACCACTCAATTCA+AGG | 0.452926 | 1.3:-48701531 | MS.gene24016:intron |
| GCTGCTCAATGTAGAGCTCT+TGG | 0.454335 | 1.3:-48696417 | MS.gene24016:CDS |
| CTTATTGATACAACTGGTGC+TGG | 0.460294 | 1.3:-48697096 | MS.gene24016:CDS |
| AGATCTTCCGGTACCATTGT+AGG | 0.463214 | 1.3:+48698647 | None:intergenic |
| TGCTCTTGTCATTGCTAAAG+AGG | 0.464049 | 1.3:-48698552 | MS.gene24016:intron |
| TCTAATTAATAAAGTATGCC+AGG | 0.474893 | 1.3:+48696358 | None:intergenic |
| TCGGAGCTTATTGATACAAC+TGG | 0.481009 | 1.3:-48697102 | MS.gene24016:CDS |
| CTAGGTTGCAAATGACGCTC+AGG | 0.489161 | 1.3:-48699396 | MS.gene24016:intron |
| AGGGAGAGGAAAAGCAGTGT+TGG | 0.491482 | 1.3:+48701728 | None:intergenic |
| AAATTGTTATCTGCATTGAA+TGG | 0.495412 | 1.3:-48698614 | MS.gene24016:CDS |
| GGAGCTAGAAGCTGAGGGTG+TGG | 0.495904 | 1.3:-48699357 | MS.gene24016:CDS |
| GAAATCTTTAACAATGAGAA+AGG | 0.497680 | 1.3:-48697771 | MS.gene24016:CDS |
| TGCAAATGACGCTCAGGGTA+GGG | 0.500517 | 1.3:-48699390 | MS.gene24016:CDS |
| GCAATATAGGTGCAAGGTGG+GGG | 0.509074 | 1.3:-48699562 | MS.gene24016:intron |
| GTTACAAAATTTAGAGCAGA+CGG | 0.513539 | 1.3:-48697180 | MS.gene24016:CDS |
| TGTTTCCAGGTCTCAAAGGA+AGG | 0.519022 | 1.3:-48699080 | MS.gene24016:intron |
| TGCAATATAGGTGCAAGGTG+GGG | 0.519555 | 1.3:-48699563 | MS.gene24016:intron |
| TTATTGATACAACTGGTGCT+GGG | 0.519824 | 1.3:-48697095 | MS.gene24016:CDS |
| CATGCCAACCTGCGTTGCCT+CGG | 0.527612 | 1.3:-48697735 | MS.gene24016:intron |
| GACGGGATAGGATCAGTATG+TGG | 0.528060 | 1.3:-48697162 | MS.gene24016:CDS |
| AAATTTAGAGCAGACGGGAT+AGG | 0.530754 | 1.3:-48697174 | MS.gene24016:CDS |
| CGAGGCAACGCAGGTTGGCA+TGG | 0.530850 | 1.3:+48697736 | None:intergenic |
| AGGTCATTCAATCCTTCCCT+TGG | 0.534609 | 1.3:+48698232 | None:intergenic |
| AAGAAGACACTCACAATGAC+AGG | 0.535206 | 1.3:+48701699 | None:intergenic |
| TAGTTGATGCTGAAAGGCCA+AGG | 0.535644 | 1.3:-48698249 | MS.gene24016:CDS |
| AATGTAGAGCTCTTGGAGCT+AGG | 0.538329 | 1.3:-48696410 | MS.gene24016:CDS |
| GGGTTCACACTTAGAAGAAG+TGG | 0.542271 | 1.3:-48697810 | MS.gene24016:CDS |
| GATAGAGGAGCTAGAAGCTG+AGG | 0.543786 | 1.3:-48699363 | MS.gene24016:CDS |
| TTGCAAATGACGCTCAGGGT+AGG | 0.550449 | 1.3:-48699391 | MS.gene24016:CDS |
| TTGCAATATAGGTGCAAGGT+GGG | 0.552594 | 1.3:-48699564 | MS.gene24016:intron |
| ATGCTCAGAAAAGTTTCCTA+AGG | 0.555246 | 1.3:-48698185 | MS.gene24016:intron |
| CCATCTTAGTTGATGCTGAA+AGG | 0.556239 | 1.3:-48698255 | MS.gene24016:CDS |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 1.3:-48698654 | MS.gene24016:CDS |
| CATTTGTTTCCAGGTCTCAA+AGG | 0.562119 | 1.3:-48699084 | MS.gene24016:intron |
| AGCTATTACCGAGGCAACGC+AGG | 0.562817 | 1.3:+48697727 | None:intergenic |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 1.3:-48698603 | MS.gene24016:CDS |
| GCTTACCACATGAGAAGCAA+AGG | 0.564484 | 1.3:+48696733 | None:intergenic |
| GTTTCCAGGTCTCAAAGGAA+GGG | 0.571955 | 1.3:-48699079 | MS.gene24016:intron |
| ATATCGCACTGATCCAAACC+TGG | 0.578250 | 1.3:-48696376 | MS.gene24016:CDS |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 1.3:-48698660 | MS.gene24016:CDS |
| ACACTTAGAAGAAGTGGATG+TGG | 0.593132 | 1.3:-48697804 | MS.gene24016:CDS |
| CATAATCAGCCAAGTCCAGA+AGG | 0.594681 | 1.3:+48698212 | None:intergenic |
| ATGCTTCAGAAATGTGCAGA+TGG | 0.596169 | 1.3:-48697942 | MS.gene24016:intron |
| TTACAAAATTTAGAGCAGAC+GGG | 0.602375 | 1.3:-48697179 | MS.gene24016:CDS |
| GTTGTATCAATAAGCTCCGA+TGG | 0.602597 | 1.3:+48697105 | None:intergenic |
| ATTACCGAGGCAACGCAGGT+TGG | 0.609993 | 1.3:+48697731 | None:intergenic |
| GTTGCCCTTTGCTTCTCATG+TGG | 0.613678 | 1.3:-48696738 | MS.gene24016:intron |
| CTTACCACATGAGAAGCAAA+GGG | 0.616843 | 1.3:+48696734 | None:intergenic |
| CGAACATGTATATTCACAGA+AGG | 0.631793 | 1.3:-48698674 | MS.gene24016:CDS |
| ACGGGATAGGATCAGTATGT+GGG | 0.632094 | 1.3:-48697161 | MS.gene24016:CDS |
| TATTGATACAACTGGTGCTG+GGG | 0.632340 | 1.3:-48697094 | MS.gene24016:CDS |
| GATGCTGAAAGGCCAAGGGA+AGG | 0.639502 | 1.3:-48698244 | MS.gene24016:CDS |
| ATAGAGGAGCTAGAAGCTGA+GGG | 0.648546 | 1.3:-48699362 | MS.gene24016:CDS |
| ATTGCAACTTTGGGAAAAGA+CGG | 0.651143 | 1.3:-48697972 | MS.gene24016:CDS |
| AGGATGAACCTTGAATTGAG+TGG | 0.655549 | 1.3:+48701523 | None:intergenic |
| AGAGCTCTTGGAGCTAGGAG+TGG | 0.656252 | 1.3:-48696405 | MS.gene24016:CDS |
| TAGGTTGCAAATGACGCTCA+GGG | 0.659046 | 1.3:-48699395 | MS.gene24016:CDS |
| AGTTGATGCTGAAAGGCCAA+GGG | 0.668854 | 1.3:-48698248 | MS.gene24016:CDS |
| GTATCAATAAGCTCCGATGG+TGG | 0.679992 | 1.3:+48697108 | None:intergenic |
| GGATAGGATCAGTATGTGGG+AGG | 0.683588 | 1.3:-48697158 | MS.gene24016:CDS |
| TTTGCAATATAGGTGCAAGG+TGG | 0.684597 | 1.3:-48699565 | MS.gene24016:intron |
| CATTTCACAGACATGGACAG+AGG | 0.705633 | 1.3:-48698057 | MS.gene24016:intron |
| GTGTTTGCAATATAGGTGCA+AGG | 0.708600 | 1.3:-48699568 | MS.gene24016:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCAAAAAAATATAATTA+CGG | - | chr1.3:48696686-48696705 | MS.gene24016:intron | 10.0% |
| !!! | GCTAATTATATTTTAAATAT+TGG | - | chr1.3:48697643-48697662 | MS.gene24016:intron | 10.0% |
| !! | AAAAACAAATCTTATGTATA+AGG | - | chr1.3:48696791-48696810 | MS.gene24016:intron | 15.0% |
| !! | AAATTAGTAGTATTAATTAG+GGG | - | chr1.3:48697969-48697988 | MS.gene24016:CDS | 15.0% |
| !! | ACAAATTAGTAGTATTAATT+AGG | - | chr1.3:48697967-48697986 | MS.gene24016:CDS | 15.0% |
| !! | ATCATAATTCTAAATAGATT+CGG | - | chr1.3:48699604-48699623 | MS.gene24016:intron | 15.0% |
| !! | ATGTAAAATCATTTAAGTAA+TGG | + | chr1.3:48699088-48699107 | None:intergenic | 15.0% |
| !! | ATTGTAATAATAAAAACACA+AGG | + | chr1.3:48696608-48696627 | None:intergenic | 15.0% |
| !! | CAAATTAGTAGTATTAATTA+GGG | - | chr1.3:48697968-48697987 | MS.gene24016:CDS | 15.0% |
| !! | TAATAAAAACTGAGAATATA+GGG | - | chr1.3:48700530-48700549 | MS.gene24016:intron | 15.0% |
| !! | TATAAGTATATGAAAGTTAT+TGG | - | chr1.3:48699171-48699190 | MS.gene24016:intron | 15.0% |
| !! | TTAATAAAAACTGAGAATAT+AGG | - | chr1.3:48700529-48700548 | MS.gene24016:intron | 15.0% |
| !!! | GACATATTTTATTTTAGATA+TGG | + | chr1.3:48698887-48698906 | None:intergenic | 15.0% |
| !!! | TTGAAAATTGAAGTAAATTT+TGG | + | chr1.3:48698816-48698835 | None:intergenic | 15.0% |
| !! | AAAACCTTAGAAATTATTCT+TGG | + | chr1.3:48698604-48698623 | None:intergenic | 20.0% |
| !! | AAAATATTACCCTATCTTAA+TGG | + | chr1.3:48697503-48697522 | None:intergenic | 20.0% |
| !! | AAAGTAATTGTAAGCATATA+TGG | - | chr1.3:48700502-48700521 | MS.gene24016:intron | 20.0% |
| !! | AAATGTGAAAAAAGTAAAGA+GGG | + | chr1.3:48697841-48697860 | None:intergenic | 20.0% |
| !! | AATAATGAATACTATAGACA+AGG | - | chr1.3:48696759-48696778 | MS.gene24016:CDS | 20.0% |
| !! | ACATACTTTACATTGAAAAT+CGG | - | chr1.3:48700568-48700587 | MS.gene24016:intron | 20.0% |
| !! | ATATAAACAAAACAGTTGTT+TGG | + | chr1.3:48701252-48701271 | None:intergenic | 20.0% |
| !! | CAAAAATAAAATCAAATGGA+TGG | - | chr1.3:48698054-48698073 | MS.gene24016:intron | 20.0% |
| !! | CTAATTAATTTCTAATGACT+AGG | - | chr1.3:48698680-48698699 | MS.gene24016:CDS | 20.0% |
| !! | TATATCATCTTATCACTATT+TGG | + | chr1.3:48701409-48701428 | None:intergenic | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | + | chr1.3:48699047-48699066 | None:intergenic | 20.0% |
| !! | TCAATATTTCTTAATGATGT+TGG | - | chr1.3:48698165-48698184 | MS.gene24016:intron | 20.0% |
| !! | TGATTAGAAAGGAAAAAAAA+AGG | + | chr1.3:48700759-48700778 | None:intergenic | 20.0% |
| !! | TTAAGTTAAATTTAAGCACT+AGG | - | chr1.3:48699218-48699237 | MS.gene24016:intron | 20.0% |
| !!! | AAAAATAATCTAAAGCAAAC+AGG | - | chr1.3:48698790-48698809 | MS.gene24016:intron | 20.0% |
| !!! | AAAGTCTTTTAAGATCTATT+GGG | - | chr1.3:48698248-48698267 | MS.gene24016:CDS | 20.0% |
| !!! | ACAAGAACATTAGTTAATTT+TGG | - | chr1.3:48699985-48700004 | MS.gene24016:intron | 20.0% |
| !!! | ACTTGATAATTATATGAGAA+GGG | + | chr1.3:48700410-48700429 | None:intergenic | 20.0% |
| !!! | CAAGAACATTAGTTAATTTT+GGG | - | chr1.3:48699986-48700005 | MS.gene24016:intron | 20.0% |
| !!! | CTTATATTAAACACATGTTT+TGG | + | chr1.3:48698391-48698410 | None:intergenic | 20.0% |
| !!! | TATATTAATGTGTTTGTTGT+TGG | - | chr1.3:48701633-48701652 | MS.gene24016:intron | 20.0% |
| !!! | TATGATAATGCACAATTATT+AGG | + | chr1.3:48700617-48700636 | None:intergenic | 20.0% |
| !!! | TCTAAATTTTGTAACATTCT+AGG | + | chr1.3:48700909-48700928 | None:intergenic | 20.0% |
| !!! | TGTATAATTTTAGTCAAAGT+GGG | - | chr1.3:48697586-48697605 | MS.gene24016:intron | 20.0% |
| !!! | TTATATTTTAAATATTGGCG+TGG | - | chr1.3:48697648-48697667 | MS.gene24016:intron | 20.0% |
| !!! | TTTTTTTCCTTTCTAATCAA+TGG | - | chr1.3:48700760-48700779 | MS.gene24016:intron | 20.0% |
| ! | AAAGCCAAGAATAATTTCTA+AGG | - | chr1.3:48698597-48698616 | MS.gene24016:CDS | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | + | chr1.3:48698932-48698951 | None:intergenic | 25.0% |
| ! | AAATTGTTATCTGCATTGAA+TGG | - | chr1.3:48699480-48699499 | MS.gene24016:intron | 25.0% |
| ! | AAATTTGTGATTGCAACTTT+GGG | - | chr1.3:48700113-48700132 | MS.gene24016:intron | 25.0% |
| ! | AAGGAAAAAAAAAGGTTGTA+TGG | + | chr1.3:48700751-48700770 | None:intergenic | 25.0% |
| ! | AATAAAAACACAAGGAAAAG+AGG | + | chr1.3:48696600-48696619 | None:intergenic | 25.0% |
| ! | AATGAATGAAATTGTTTGTG+TGG | - | chr1.3:48696469-48696488 | MS.gene24016:intron | 25.0% |
| ! | AATGTGAAAAAAGTAAAGAG+GGG | + | chr1.3:48697840-48697859 | None:intergenic | 25.0% |
| ! | AATTAGATTTCTTAAGCATG+TGG | - | chr1.3:48699297-48699316 | MS.gene24016:intron | 25.0% |
| ! | AATTGTCCTTAAAAAATCCA+TGG | + | chr1.3:48697022-48697041 | None:intergenic | 25.0% |
| ! | ACAAATCTTATGTATAAGGA+CGG | - | chr1.3:48696795-48696814 | MS.gene24016:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr1.3:48698015-48698034 | MS.gene24016:CDS | 25.0% |
| ! | ATTAATTAGCCACATTCATA+AGG | + | chr1.3:48698669-48698688 | None:intergenic | 25.0% |
| ! | ATTATTAATTGAAATCTCCG+TGG | - | chr1.3:48696967-48696986 | MS.gene24016:intron | 25.0% |
| ! | GAAATCTTTAACAATGAGAA+AGG | - | chr1.3:48700323-48700342 | MS.gene24016:intron | 25.0% |
| ! | GAAATGTGAAAAAAGTAAAG+AGG | + | chr1.3:48697842-48697861 | None:intergenic | 25.0% |
| ! | GAAGCAATTTAACTGAAATT+AGG | - | chr1.3:48701559-48701578 | MS.gene24016:CDS | 25.0% |
| ! | GATAGCTGCAAATAAAATAA+AGG | + | chr1.3:48701310-48701329 | None:intergenic | 25.0% |
| ! | GATTCATAGAGATAAATGAT+GGG | + | chr1.3:48698306-48698325 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr1.3:48698050-48698069 | MS.gene24016:CDS | 25.0% |
| ! | GTTGTAGCATAATGTAATAT+AGG | - | chr1.3:48699578-48699597 | MS.gene24016:intron | 25.0% |
| ! | TAAATTTGTGATTGCAACTT+TGG | - | chr1.3:48700112-48700131 | MS.gene24016:intron | 25.0% |
| ! | TAAGAATGTCTTAAGAGTTA+AGG | + | chr1.3:48696848-48696867 | None:intergenic | 25.0% |
| ! | TATATCTCTTGAACTTCATA+TGG | - | chr1.3:48697362-48697381 | MS.gene24016:intron | 25.0% |
| ! | TATTACAATGAAGTTCCATT+TGG | - | chr1.3:48696619-48696638 | MS.gene24016:intron | 25.0% |
| ! | TCTAAGTAAATTCTCATTGT+TGG | - | chr1.3:48699675-48699694 | MS.gene24016:intron | 25.0% |
| ! | TGAAAAGGTGATTACATTTA+GGG | - | chr1.3:48698030-48698049 | MS.gene24016:CDS | 25.0% |
| ! | TGATTCATAGAGATAAATGA+TGG | + | chr1.3:48698307-48698326 | None:intergenic | 25.0% |
| ! | TTAACACAATCCTATAAAAC+TGG | + | chr1.3:48698438-48698457 | None:intergenic | 25.0% |
| ! | TTAATTCATGGAATGTTAAG+AGG | + | chr1.3:48701063-48701082 | None:intergenic | 25.0% |
| ! | TTATTAATTGAAATCTCCGT+GGG | - | chr1.3:48696968-48696987 | MS.gene24016:intron | 25.0% |
| ! | TTGAAAAGGTGATTACATTT+AGG | - | chr1.3:48698029-48698048 | MS.gene24016:CDS | 25.0% |
| !! | AATTCAATTAGCTTGGTTTA+TGG | + | chr1.3:48699788-48699807 | None:intergenic | 25.0% |
| !! | CAACTAAGATGGATATATTT+TGG | + | chr1.3:48699831-48699850 | None:intergenic | 25.0% |
| !! | CACTTGATAATTATATGAGA+AGG | + | chr1.3:48700411-48700430 | None:intergenic | 25.0% |
| !! | CTTGATAATTATATGAGAAG+GGG | + | chr1.3:48700409-48700428 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr1.3:48697979-48697998 | MS.gene24016:CDS | 25.0% |
| !! | TTGATAATTATATGAGAAGG+GGG | + | chr1.3:48700408-48700427 | None:intergenic | 25.0% |
| !! | TTTATCGTAAATTTGAGATC+AGG | + | chr1.3:48701115-48701134 | None:intergenic | 25.0% |
| !!! | CAAAGTCTTTTAAGATCTAT+TGG | - | chr1.3:48698247-48698266 | MS.gene24016:CDS | 25.0% |
| !!! | CACTAGTTTCAATTCTTTTA+AGG | - | chr1.3:48700078-48700097 | MS.gene24016:intron | 25.0% |
| !!! | CATTGTTTAACATTTGTTGT+TGG | - | chr1.3:48696891-48696910 | MS.gene24016:intron | 25.0% |
| !!! | CTGTATAATTTTAGTCAAAG+TGG | - | chr1.3:48697585-48697604 | MS.gene24016:intron | 25.0% |
| !!! | GAGGTATAACTAATTTTGAT+TGG | + | chr1.3:48696646-48696665 | None:intergenic | 25.0% |
| !!! | TTGATAGTGAGTACTATTAT+GGG | - | chr1.3:48697621-48697640 | MS.gene24016:intron | 25.0% |
| !!! | TTTGATAGTGAGTACTATTA+TGG | - | chr1.3:48697620-48697639 | MS.gene24016:intron | 25.0% |
| AAGTAAATTCTCATTGTTGG+AGG | - | chr1.3:48699678-48699697 | MS.gene24016:intron | 30.0% | |
| ACCATTGCTAATAGTTCTTT+AGG | + | chr1.3:48697460-48697479 | None:intergenic | 30.0% | |
| ACTCAAAAACCTTATGAATG+TGG | - | chr1.3:48698657-48698676 | MS.gene24016:CDS | 30.0% | |
| AGAAATTGTGTTAGAAATCG+TGG | + | chr1.3:48698467-48698486 | None:intergenic | 30.0% | |
| AGGTATTCCTTCACAATATT+TGG | + | chr1.3:48699724-48699743 | None:intergenic | 30.0% | |
| ATCTGAAAAAATTCCACCAT+CGG | - | chr1.3:48700973-48700992 | MS.gene24016:intron | 30.0% | |
| CAAATGGATGGTTACATTAA+GGG | - | chr1.3:48698066-48698085 | MS.gene24016:intron | 30.0% | |
| CAAGTGAAAAATTAGGAGAA+AGG | + | chr1.3:48699129-48699148 | None:intergenic | 30.0% | |
| CAATGTAGGTTACCAAAATA+GGG | + | chr1.3:48700704-48700723 | None:intergenic | 30.0% | |
| CCTGGCATACTTTATTAATT+AGG | - | chr1.3:48701736-48701755 | MS.gene24016:CDS | 30.0% | |
| CTCACTAGACATTATGTTAT+TGG | + | chr1.3:48699262-48699281 | None:intergenic | 30.0% | |
| CTGAAATTAGGAGAAAATCA+AGG | - | chr1.3:48701571-48701590 | MS.gene24016:CDS | 30.0% | |
| GATGCATTCATATACAAGAA+TGG | - | chr1.3:48700217-48700236 | MS.gene24016:intron | 30.0% | |
| GCAATCACAAATTTAAGTCT+TGG | + | chr1.3:48700107-48700126 | None:intergenic | 30.0% | |
| GTTGACAAATTTAGTTAGCA+TGG | + | chr1.3:48696716-48696735 | None:intergenic | 30.0% | |
| TAATTGAATTTCGCTCTTAC+AGG | - | chr1.3:48699798-48699817 | MS.gene24016:intron | 30.0% | |
| TAGCAGTTAATAACAAACAC+AGG | + | chr1.3:48701613-48701632 | None:intergenic | 30.0% | |
| TATATGAATGCATCATGACA+AGG | + | chr1.3:48700211-48700230 | None:intergenic | 30.0% | |
| TCAAATGGATGGTTACATTA+AGG | - | chr1.3:48698065-48698084 | MS.gene24016:intron | 30.0% | |
| TCCTAAAGAACTATTAGCAA+TGG | - | chr1.3:48697456-48697475 | MS.gene24016:intron | 30.0% | |
| TCGTTAAAAGAGTTTCACAT+AGG | - | chr1.3:48698199-48698218 | MS.gene24016:CDS | 30.0% | |
| TGAATGTGTGTTTGCAATAT+AGG | - | chr1.3:48698519-48698538 | MS.gene24016:intron | 30.0% | |
| TGATAATTATATGAGAAGGG+GGG | + | chr1.3:48700407-48700426 | None:intergenic | 30.0% | |
| TGCTAATTTATTCTACAACG+TGG | - | chr1.3:48699381-48699400 | MS.gene24016:CDS | 30.0% | |
| TTAATAAAGTATGCCAGGTT+TGG | + | chr1.3:48701734-48701753 | None:intergenic | 30.0% | |
| TTAGAAAGTTCACAACAATG+TGG | - | chr1.3:48697430-48697449 | MS.gene24016:intron | 30.0% | |
| TTTGCTCTACCATTAAGATA+GGG | - | chr1.3:48697491-48697510 | MS.gene24016:intron | 30.0% | |
| ! | AACGATCGATTTCAAATTGA+TGG | - | chr1.3:48701174-48701193 | MS.gene24016:intron | 30.0% |
| ! | ACTGTTATGTTTTCTCATTC+TGG | - | chr1.3:48696428-48696447 | MS.gene24016:intron | 30.0% |
| ! | CTATTAGTACTTTTCTCAAG+TGG | - | chr1.3:48699650-48699669 | MS.gene24016:intron | 30.0% |
| ! | GAATCAATATGTGTGCTTTT+TGG | - | chr1.3:48696930-48696949 | MS.gene24016:intron | 30.0% |
| ! | GTTACAAAATTTAGAGCAGA+CGG | - | chr1.3:48700914-48700933 | MS.gene24016:intron | 30.0% |
| ! | GTTATCTAGAGTTTGATTGA+AGG | - | chr1.3:48697136-48697155 | MS.gene24016:CDS | 30.0% |
| ! | TATAGCACCATTGATTAGAA+AGG | + | chr1.3:48700770-48700789 | None:intergenic | 30.0% |
| ! | TATGTGGGAGGTTATATTTT+GGG | - | chr1.3:48700948-48700967 | MS.gene24016:intron | 30.0% |
| ! | TCAATTTACTTTCTAGCAGA+GGG | - | chr1.3:48700264-48700283 | MS.gene24016:intron | 30.0% |
| ! | TCTCCTAATTTTTCACTTGT+GGG | - | chr1.3:48699130-48699149 | MS.gene24016:intron | 30.0% |
| ! | TTACAAAATTTAGAGCAGAC+GGG | - | chr1.3:48700915-48700934 | MS.gene24016:intron | 30.0% |
| ! | TTCAATTTACTTTCTAGCAG+AGG | - | chr1.3:48700263-48700282 | MS.gene24016:intron | 30.0% |
| ! | TTCTCCTAATTTTTCACTTG+TGG | - | chr1.3:48699129-48699148 | MS.gene24016:intron | 30.0% |
| ! | TTTTGCTCTACCATTAAGAT+AGG | - | chr1.3:48697490-48697509 | MS.gene24016:intron | 30.0% |
| !! | AAGCACTAGGAGTATTAAAA+AGG | - | chr1.3:48699231-48699250 | MS.gene24016:intron | 30.0% |
| !! | TTTGTTGGAGCAGTTTTATA+TGG | - | chr1.3:48701028-48701047 | MS.gene24016:intron | 30.0% |
| !!! | CTAATTTTGATTGGTCCAAA+TGG | + | chr1.3:48696637-48696656 | None:intergenic | 30.0% |
| !!! | TAGCTATTTCTTCCCTATTT+TGG | - | chr1.3:48700689-48700708 | MS.gene24016:intron | 30.0% |
| !!! | TGAGTTCATTGATTTTTGTG+AGG | + | chr1.3:48696665-48696684 | None:intergenic | 30.0% |
| !!! | TGGGTTGCATTTTTTAAGAA+AGG | + | chr1.3:48697678-48697697 | None:intergenic | 30.0% |
| AACAGTTCGTAAAGTGATCT+AGG | + | chr1.3:48701200-48701219 | None:intergenic | 35.0% | |
| AATGAAATTGTTTGTGTGGC+AGG | - | chr1.3:48696473-48696492 | MS.gene24016:intron | 35.0% | |
| AATGTCTTAAGAGTTAAGGC+TGG | + | chr1.3:48696844-48696863 | None:intergenic | 35.0% | |
| ACACAATAAAGGAAACCTGA+TGG | + | chr1.3:48698281-48698300 | None:intergenic | 35.0% | |
| AGAATTGAAACTAGTGCTCT+TGG | + | chr1.3:48700074-48700093 | None:intergenic | 35.0% | |
| AGAGCGAAATTCAATTAGCT+TGG | + | chr1.3:48699795-48699814 | None:intergenic | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | + | chr1.3:48699517-48699536 | None:intergenic | 35.0% | |
| ATGACAAGGATCAAACAAAG+GGG | + | chr1.3:48700197-48700216 | None:intergenic | 35.0% | |
| ATGCTCAGAAAAGTTTCCTA+AGG | - | chr1.3:48699909-48699928 | MS.gene24016:intron | 35.0% | |
| ATTGTGTTAGAAATCGTGGT+TGG | + | chr1.3:48698463-48698482 | None:intergenic | 35.0% | |
| CAATCAAACTCTAGATAACC+AGG | + | chr1.3:48697135-48697154 | None:intergenic | 35.0% | |
| CATACAAACAAACGACAGTT+TGG | + | chr1.3:48697917-48697936 | None:intergenic | 35.0% | |
| CATGACAAGGATCAAACAAA+GGG | + | chr1.3:48700198-48700217 | None:intergenic | 35.0% | |
| CCATGTACCAAATATTGTGA+AGG | - | chr1.3:48699714-48699733 | MS.gene24016:intron | 35.0% | |
| CCTTCACAATATTTGGTACA+TGG | + | chr1.3:48699717-48699736 | None:intergenic | 35.0% | |
| CGAACATGTATATTCACAGA+AGG | - | chr1.3:48699420-48699439 | MS.gene24016:intron | 35.0% | |
| CTCACTATCAAACAAAAGCT+AGG | + | chr1.3:48697612-48697631 | None:intergenic | 35.0% | |
| GAATAGAACCACTCAATTCA+AGG | - | chr1.3:48696563-48696582 | MS.gene24016:intron | 35.0% | |
| GCAATGTAGGTTACCAAAAT+AGG | + | chr1.3:48700705-48700724 | None:intergenic | 35.0% | |
| GCAATTAGATGAACAGACAT+AGG | + | chr1.3:48699744-48699763 | None:intergenic | 35.0% | |
| TCATGACAAGGATCAAACAA+AGG | + | chr1.3:48700199-48700218 | None:intergenic | 35.0% | |
| TCCTATAAAACTGGTATGTG+AGG | + | chr1.3:48698429-48698448 | None:intergenic | 35.0% | |
| TGTGGATACTTCTTCATTTG+TGG | - | chr1.3:48698755-48698774 | MS.gene24016:intron | 35.0% | |
| TTATTGATACAACTGGTGCT+GGG | - | chr1.3:48700999-48701018 | MS.gene24016:intron | 35.0% | |
| ! | ATCGTAAATTTGAGATCAGG+CGG | + | chr1.3:48701112-48701131 | None:intergenic | 35.0% |
| ! | ATTGCAACTTTGGGAAAAGA+CGG | - | chr1.3:48700122-48700141 | MS.gene24016:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | - | chr1.3:48699131-48699150 | MS.gene24016:intron | 35.0% |
| ! | GAATTGAGTGGTTCTATTCT+TGG | + | chr1.3:48696562-48696581 | None:intergenic | 35.0% |
| ! | GTATGTGGGAGGTTATATTT+TGG | - | chr1.3:48700947-48700966 | MS.gene24016:intron | 35.0% |
| ! | GTTTTATGTAGCTATTACCG+AGG | + | chr1.3:48700379-48700398 | None:intergenic | 35.0% |
| ! | TCACAATGACAGGATTTTCA+GGG | + | chr1.3:48696388-48696407 | None:intergenic | 35.0% |
| ! | TGAGAGAGTGTAGTTAAAGT+GGG | + | chr1.3:48697319-48697338 | None:intergenic | 35.0% |
| ! | TGATTTGAGTAACTTGCCTT+AGG | + | chr1.3:48699928-48699947 | None:intergenic | 35.0% |
| ! | TTCCTTTTCCATTTGTTTCC+AGG | - | chr1.3:48699001-48699020 | MS.gene24016:intron | 35.0% |
| ! | TTTTTATTGCGTTAACCCTC+CGG | - | chr1.3:48697092-48697111 | MS.gene24016:CDS | 35.0% |
| !! | AATGATGGGTGACACAATAA+AGG | + | chr1.3:48698292-48698311 | None:intergenic | 35.0% |
| !! | ACCTCACATACCAGTTTTAT+AGG | - | chr1.3:48698425-48698444 | MS.gene24016:intron | 35.0% |
| !! | AGGTTGTATGGTGTTATTGA+TGG | + | chr1.3:48700739-48700758 | None:intergenic | 35.0% |
| !! | GGTTGTATGGTGTTATTGAT+GGG | + | chr1.3:48700738-48700757 | None:intergenic | 35.0% |
| AAATTGTTTGTGTGGCAGGT+TGG | - | chr1.3:48696477-48696496 | MS.gene24016:intron | 40.0% | |
| AACACAAGGAAAAGAGGAAG+AGG | + | chr1.3:48696594-48696613 | None:intergenic | 40.0% | |
| AAGAAGACACTCACAATGAC+AGG | + | chr1.3:48696398-48696417 | None:intergenic | 40.0% | |
| AATAAAGGAAACCTGATGGC+AGG | + | chr1.3:48698277-48698296 | None:intergenic | 40.0% | |
| AATTGTTTGTGTGGCAGGTT+GGG | - | chr1.3:48696478-48696497 | MS.gene24016:intron | 40.0% | |
| ACACTTAGAAGAAGTGGATG+TGG | - | chr1.3:48700290-48700309 | MS.gene24016:intron | 40.0% | |
| ACGCTCATGATCATCACTAT+TGG | + | chr1.3:48698333-48698352 | None:intergenic | 40.0% | |
| AGAGGGGTTACATTAAGAGA+CGG | + | chr1.3:48697824-48697843 | None:intergenic | 40.0% | |
| AGATGACGTGGGAAAGAAAA+TGG | + | chr1.3:48697698-48697717 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | + | chr1.3:48699136-48699155 | None:intergenic | 40.0% | |
| AGGATGAACCTTGAATTGAG+TGG | + | chr1.3:48696574-48696593 | None:intergenic | 40.0% | |
| AGTAATGGTGTACATACGTG+TGG | + | chr1.3:48699073-48699092 | None:intergenic | 40.0% | |
| ATGCTTCAGAAATGTGCAGA+TGG | - | chr1.3:48700152-48700171 | MS.gene24016:intron | 40.0% | |
| ATTGAATGACCTTCTGGACT+TGG | - | chr1.3:48699873-48699892 | MS.gene24016:intron | 40.0% | |
| ATTGGATGTGCAACTTCTGT+GGG | - | chr1.3:48696995-48697014 | MS.gene24016:intron | 40.0% | |
| CATTTGTTTCCAGGTCTCAA+AGG | - | chr1.3:48699010-48699029 | MS.gene24016:intron | 40.0% | |
| CCTTTCAGCATCAACTAAGA+TGG | + | chr1.3:48699842-48699861 | None:intergenic | 40.0% | |
| CGAGTCACGTTTATTGATCT+TGG | - | chr1.3:48701086-48701105 | MS.gene24016:intron | 40.0% | |
| CGCTCATGATCATCACTATT+GGG | + | chr1.3:48698332-48698351 | None:intergenic | 40.0% | |
| CGTGACTCGCATTTAATTCA+TGG | + | chr1.3:48701075-48701094 | None:intergenic | 40.0% | |
| CTTACCACATGAGAAGCAAA+GGG | + | chr1.3:48701363-48701382 | None:intergenic | 40.0% | |
| CTTATTGATACAACTGGTGC+TGG | - | chr1.3:48700998-48701017 | MS.gene24016:intron | 40.0% | |
| GACCTGGAAACAAATGGAAA+AGG | + | chr1.3:48699006-48699025 | None:intergenic | 40.0% | |
| GATGACGTGGGAAAGAAAAT+GGG | + | chr1.3:48697697-48697716 | None:intergenic | 40.0% | |
| GGATTTCTTTCTTCGAGAAC+CGG | + | chr1.3:48697114-48697133 | None:intergenic | 40.0% | |
| GTGTTTGCAATATAGGTGCA+AGG | - | chr1.3:48698526-48698545 | MS.gene24016:intron | 40.0% | |
| GTTATTGATGGGAGTCTTTG+TGG | + | chr1.3:48700727-48700746 | None:intergenic | 40.0% | |
| GTTCTCGAAGAAAGAAATCC+TGG | - | chr1.3:48697114-48697133 | MS.gene24016:CDS | 40.0% | |
| GTTGTATCAATAAGCTCCGA+TGG | + | chr1.3:48700992-48701011 | None:intergenic | 40.0% | |
| TCCATGTCTGTGAAATGTGT+CGG | + | chr1.3:48700034-48700053 | None:intergenic | 40.0% | |
| TCGGAGCTTATTGATACAAC+TGG | - | chr1.3:48700992-48701011 | MS.gene24016:intron | 40.0% | |
| TGCTCTTGTCATTGCTAAAG+AGG | - | chr1.3:48699542-48699561 | MS.gene24016:CDS | 40.0% | |
| TGGATGGTTACATTAAGGGA+CGG | - | chr1.3:48698070-48698089 | MS.gene24016:intron | 40.0% | |
| TGTTGGTGTACTCATCTCTT+TGG | - | chr1.3:48696908-48696927 | MS.gene24016:intron | 40.0% | |
| TTCTACAACGTGGAACATTC+AGG | - | chr1.3:48699391-48699410 | MS.gene24016:CDS | 40.0% | |
| TTGCAATATAGGTGCAAGGT+GGG | - | chr1.3:48698530-48698549 | MS.gene24016:intron | 40.0% | |
| TTGGCATGTGATGGTATTAC+AGG | - | chr1.3:48701652-48701671 | MS.gene24016:intron | 40.0% | |
| TTTGCAATATAGGTGCAAGG+TGG | - | chr1.3:48698529-48698548 | MS.gene24016:intron | 40.0% | |
| ! | AAATTTAGAGCAGACGGGAT+AGG | - | chr1.3:48700920-48700939 | MS.gene24016:intron | 40.0% |
| ! | CATTTTCTCTGGTGAGAAGT+TGG | + | chr1.3:48701337-48701356 | None:intergenic | 40.0% |
| ! | CCATCTTAGTTGATGCTGAA+AGG | - | chr1.3:48699839-48699858 | MS.gene24016:intron | 40.0% |
| ! | CTCACAATGACAGGATTTTC+AGG | + | chr1.3:48696389-48696408 | None:intergenic | 40.0% |
| ! | GTGAGAGAGTGTAGTTAAAG+TGG | + | chr1.3:48697320-48697339 | None:intergenic | 40.0% |
| ! | TATTGATACAACTGGTGCTG+GGG | - | chr1.3:48701000-48701019 | MS.gene24016:intron | 40.0% |
| ! | TTTTCTTTCCCACGTCATCT+CGG | - | chr1.3:48697698-48697717 | MS.gene24016:intron | 40.0% |
| !! | CTTTGAGACCTGGAAACAAA+TGG | + | chr1.3:48699012-48699031 | None:intergenic | 40.0% |
| !! | TGTTTGTTGTTGGCATGTGA+TGG | - | chr1.3:48701643-48701662 | MS.gene24016:intron | 40.0% |
| !!! | CTATTCTTGGTGTCTGGTTT+TGG | + | chr1.3:48696549-48696568 | None:intergenic | 40.0% |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | - | chr1.3:48699508-48699527 | MS.gene24016:CDS | 40.0% |
| !!! | GTGGGTCCATGGATTTTTTA+AGG | - | chr1.3:48697013-48697032 | MS.gene24016:intron | 40.0% |
| AAAGTAGACCGAGATGACGT+GGG | + | chr1.3:48697709-48697728 | None:intergenic | 45.0% | |
| AATGTAGAGCTCTTGGAGCT+AGG | - | chr1.3:48701684-48701703 | MS.gene24016:intron | 45.0% | |
| ACAAGGATCAAACAAAGGGG+TGG | + | chr1.3:48700194-48700213 | None:intergenic | 45.0% | |
| ACGGGATAGGATCAGTATGT+GGG | - | chr1.3:48700933-48700952 | MS.gene24016:intron | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | + | chr1.3:48699450-48699469 | None:intergenic | 45.0% | |
| AGCACAAGTCAACGCATTTC+CGG | + | chr1.3:48698563-48698582 | None:intergenic | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | - | chr1.3:48699440-48699459 | MS.gene24016:intron | 45.0% | |
| AGGTCATTCAATCCTTCCCT+TGG | + | chr1.3:48699865-48699884 | None:intergenic | 45.0% | |
| AGGTTTGGATCAGTGCGATA+TGG | + | chr1.3:48701719-48701738 | None:intergenic | 45.0% | |
| ATAGAGGAGCTAGAAGCTGA+GGG | - | chr1.3:48698732-48698751 | MS.gene24016:intron | 45.0% | |
| ATGGTTACATTAAGGGACGG+AGG | - | chr1.3:48698073-48698092 | MS.gene24016:intron | 45.0% | |
| CAAACAAAGGGGTGGAAAAG+AGG | + | chr1.3:48700186-48700205 | None:intergenic | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | - | chr1.3:48699434-48699453 | MS.gene24016:intron | 45.0% | |
| CATAATCAGCCAAGTCCAGA+AGG | + | chr1.3:48699885-48699904 | None:intergenic | 45.0% | |
| CATTGGATGTGCAACTTCTG+TGG | - | chr1.3:48696994-48697013 | MS.gene24016:intron | 45.0% | |
| CATTTCACAGACATGGACAG+AGG | - | chr1.3:48700037-48700056 | MS.gene24016:intron | 45.0% | |
| GCTTACCACATGAGAAGCAA+AGG | + | chr1.3:48701364-48701383 | None:intergenic | 45.0% | |
| GGAAGGATTGAATGACCTTC+TGG | - | chr1.3:48699867-48699886 | MS.gene24016:intron | 45.0% | |
| GGGTTACATTAAGAGACGGA+GGG | + | chr1.3:48697820-48697839 | None:intergenic | 45.0% | |
| GGGTTCACACTTAGAAGAAG+TGG | - | chr1.3:48700284-48700303 | MS.gene24016:intron | 45.0% | |
| GTATCAATAAGCTCCGATGG+TGG | + | chr1.3:48700989-48701008 | None:intergenic | 45.0% | |
| GTTTCCAGGTCTCAAAGGAA+GGG | - | chr1.3:48699015-48699034 | MS.gene24016:intron | 45.0% | |
| TAACTACACTCTCTCACGCT+TGG | - | chr1.3:48697323-48697342 | MS.gene24016:intron | 45.0% | |
| TAGGTTGCAAATGACGCTCA+GGG | - | chr1.3:48698699-48698718 | MS.gene24016:intron | 45.0% | |
| TCCGACACATTTCACAGACA+TGG | - | chr1.3:48700030-48700049 | MS.gene24016:intron | 45.0% | |
| TGCAATATAGGTGCAAGGTG+GGG | - | chr1.3:48698531-48698550 | MS.gene24016:intron | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | - | chr1.3:48699491-48699510 | MS.gene24016:intron | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | - | chr1.3:48698074-48698093 | MS.gene24016:intron | 45.0% | |
| TGTTTCCAGGTCTCAAAGGA+AGG | - | chr1.3:48699014-48699033 | MS.gene24016:intron | 45.0% | |
| TTCTTTCTTCGAGAACCGGA+GGG | + | chr1.3:48697110-48697129 | None:intergenic | 45.0% | |
| TTTCTTTCTTCGAGAACCGG+AGG | + | chr1.3:48697111-48697130 | None:intergenic | 45.0% | |
| TTTGCACGCGAAAGATCTTC+CGG | + | chr1.3:48699462-48699481 | None:intergenic | 45.0% | |
| ! | AGTTGATGCTGAAAGGCCAA+GGG | - | chr1.3:48699846-48699865 | MS.gene24016:intron | 45.0% |
| ! | ATATCGCACTGATCCAAACC+TGG | - | chr1.3:48701718-48701737 | MS.gene24016:CDS | 45.0% |
| ! | GCAAAGGGCAACATTTTCTC+TGG | + | chr1.3:48701348-48701367 | None:intergenic | 45.0% |
| ! | TAGTTGATGCTGAAAGGCCA+AGG | - | chr1.3:48699845-48699864 | MS.gene24016:intron | 45.0% |
| !! | ATGACAGGATTTTCAGGGAG+AGG | + | chr1.3:48696383-48696402 | None:intergenic | 45.0% |
| !! | GTGGTTCTATTCTTGGTGTC+TGG | + | chr1.3:48696555-48696574 | None:intergenic | 45.0% |
| !! | TCAGGGTAGGGTTTTGATAG+AGG | - | chr1.3:48698716-48698735 | MS.gene24016:intron | 45.0% |
| !! | TTGACTTGTGCTGCTCGTTT+GGG | - | chr1.3:48698571-48698590 | MS.gene24016:CDS | 45.0% |
| !!! | TTTAACTTAATTATAATTTT+TGG | + | chr1.3:48699208-48699227 | None:intergenic | 5.0% |
| AAAGGAAACCTGATGGCAGG+TGG | + | chr1.3:48698274-48698293 | None:intergenic | 50.0% | |
| AGGGAGAGGAAAAGCAGTGT+TGG | + | chr1.3:48696369-48696388 | None:intergenic | 50.0% | |
| CAAAGTAGACCGAGATGACG+TGG | + | chr1.3:48697710-48697729 | None:intergenic | 50.0% | |
| CTAGGTTGCAAATGACGCTC+AGG | - | chr1.3:48698698-48698717 | MS.gene24016:intron | 50.0% | |
| GAAATCTCCGTGGGAGTCAT+TGG | - | chr1.3:48696977-48696996 | MS.gene24016:intron | 50.0% | |
| GACGGGATAGGATCAGTATG+TGG | - | chr1.3:48700932-48700951 | MS.gene24016:intron | 50.0% | |
| GATAGAGGAGCTAGAAGCTG+AGG | - | chr1.3:48698731-48698750 | MS.gene24016:intron | 50.0% | |
| GCAATATAGGTGCAAGGTGG+GGG | - | chr1.3:48698532-48698551 | MS.gene24016:intron | 50.0% | |
| GCAATGACAAGAGCAGTTGC+AGG | + | chr1.3:48699537-48699556 | None:intergenic | 50.0% | |
| GCTGCTCAATGTAGAGCTCT+TGG | - | chr1.3:48701677-48701696 | MS.gene24016:intron | 50.0% | |
| GGATAGGATCAGTATGTGGG+AGG | - | chr1.3:48700936-48700955 | MS.gene24016:intron | 50.0% | |
| GGGAGTCTTTGTGGCAATGT+AGG | + | chr1.3:48700718-48700737 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGAGACGG+AGG | + | chr1.3:48697821-48697840 | None:intergenic | 50.0% | |
| GTTGCCCTTTGCTTCTCATG+TGG | - | chr1.3:48701356-48701375 | MS.gene24016:intron | 50.0% | |
| TGCAAATGACGCTCAGGGTA+GGG | - | chr1.3:48698704-48698723 | MS.gene24016:intron | 50.0% | |
| TGCACATCCAATGACTCCCA+CGG | + | chr1.3:48696987-48697006 | None:intergenic | 50.0% | |
| TTGCAAATGACGCTCAGGGT+AGG | - | chr1.3:48698703-48698722 | MS.gene24016:intron | 50.0% | |
| ! | TTTGTGTGGCAGGTTGGGTT+TGG | - | chr1.3:48696483-48696502 | MS.gene24016:intron | 50.0% |
| !! | GTTGACTTGTGCTGCTCGTT+TGG | - | chr1.3:48698570-48698589 | MS.gene24016:CDS | 50.0% |
| !! | TAGTCCCTTCCTTTGAGACC+TGG | + | chr1.3:48699022-48699041 | None:intergenic | 50.0% |
| AGAGCTCTTGGAGCTAGGAG+TGG | - | chr1.3:48701689-48701708 | MS.gene24016:intron | 55.0% | |
| AGCTATTACCGAGGCAACGC+AGG | + | chr1.3:48700370-48700389 | None:intergenic | 55.0% | |
| ATTACCGAGGCAACGCAGGT+TGG | + | chr1.3:48700366-48700385 | None:intergenic | 55.0% | |
| GATGCTGAAAGGCCAAGGGA+AGG | - | chr1.3:48699850-48699869 | MS.gene24016:intron | 55.0% | |
| GTGCAACTTCTGTGGGTCCA+TGG | - | chr1.3:48697002-48697021 | MS.gene24016:intron | 55.0% | |
| GTGCAAGGTGGGGGAAATAC+CGG | - | chr1.3:48698541-48698560 | MS.gene24016:intron | 55.0% | |
| ! | GGTGCTGGGGATGCATTTGT+TGG | - | chr1.3:48701013-48701032 | MS.gene24016:intron | 55.0% |
| CATGCCAACCTGCGTTGCCT+CGG | - | chr1.3:48700359-48700378 | MS.gene24016:intron | 60.0% | |
| CTATTGGGCCACCTGCCATC+AGG | - | chr1.3:48698263-48698282 | MS.gene24016:CDS | 60.0% | |
| GGAGCTAGAAGCTGAGGGTG+TGG | - | chr1.3:48698737-48698756 | MS.gene24016:intron | 60.0% | |
| ! | GTGTGGCAGGTTGGGTTTGG+TGG | - | chr1.3:48696486-48696505 | MS.gene24016:intron | 60.0% |
| !! | CAGGTTGGGTTTGGTGGCGT+TGG | - | chr1.3:48696492-48696511 | MS.gene24016:intron | 60.0% |
| ! | CGAGGCAACGCAGGTTGGCA+TGG | + | chr1.3:48700361-48700380 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48696359 | 48701757 | 48696359 | ID=MS.gene24016 |
| chr1.3 | mRNA | 48696359 | 48701757 | 48696359 | ID=MS.gene24016.t1;Parent=MS.gene24016 |
| chr1.3 | exon | 48701713 | 48701757 | 48701713 | ID=MS.gene24016.t1.exon1;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48701713 | 48701757 | 48701713 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48701532 | 48701621 | 48701532 | ID=MS.gene24016.t1.exon2;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48701532 | 48701621 | 48701532 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48699498 | 48699575 | 48699498 | ID=MS.gene24016.t1.exon3;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48699498 | 48699575 | 48699498 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48699340 | 48699414 | 48699340 | ID=MS.gene24016.t1.exon4;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48699340 | 48699414 | 48699340 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48699041 | 48699093 | 48699041 | ID=MS.gene24016.t1.exon5;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48699041 | 48699093 | 48699041 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48698553 | 48698703 | 48698553 | ID=MS.gene24016.t1.exon6;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48698553 | 48698703 | 48698553 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48698186 | 48698296 | 48698186 | ID=MS.gene24016.t1.exon7;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48698186 | 48698296 | 48698186 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48697943 | 48698069 | 48697943 | ID=MS.gene24016.t1.exon8;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48697943 | 48698069 | 48697943 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48697736 | 48697833 | 48697736 | ID=MS.gene24016.t1.exon9;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48697736 | 48697833 | 48697736 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48697067 | 48697205 | 48697067 | ID=MS.gene24016.t1.exon10;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48697067 | 48697205 | 48697067 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48696739 | 48696791 | 48696739 | ID=MS.gene24016.t1.exon11;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48696739 | 48696791 | 48696739 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| chr1.3 | exon | 48696359 | 48696442 | 48696359 | ID=MS.gene24016.t1.exon12;Parent=MS.gene24016.t1 |
| chr1.3 | CDS | 48696359 | 48696442 | 48696359 | ID=cds.MS.gene24016.t1;Parent=MS.gene24016.t1 |
| Gene Sequence |
| Protein sequence |
