AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24072

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24072.t1 MTR_1g068810 99.507 203 1 0 1 203 33 235 5.79e-152 421
MS.gene24072.t1 MTR_1g068810 99.507 203 1 0 1 203 37 239 6.76e-152 421
MS.gene24072.t1 MTR_1g068810 99.507 203 1 0 1 203 14 216 1.07e-151 419
MS.gene24072.t1 MTR_1g068810 99.507 203 1 0 1 203 9 211 3.40e-151 418
MS.gene24072.t1 MTR_1g068810 99.507 203 1 0 1 203 1 203 5.49e-151 417
MS.gene24072.t1 MTR_1g068810 87.446 231 1 1 1 203 37 267 1.82e-145 406
MS.gene24072.t1 MTR_1g068810 87.446 231 1 1 1 203 1 231 1.30e-144 402
MS.gene24072.t1 MTR_1g068810 87.446 231 1 1 1 203 1 231 1.51e-144 402
MS.gene24072.t1 MTR_1g096640 91.626 203 16 1 1 203 1 202 1.30e-138 387
MS.gene24072.t1 MTR_8g024050 86.170 188 25 1 17 203 57 244 9.90e-122 345
MS.gene24072.t1 MTR_7g118340 87.500 184 23 0 20 203 23 206 1.11e-120 341
MS.gene24072.t1 MTR_5g020840 83.696 184 30 0 20 203 17 200 5.68e-118 334
MS.gene24072.t1 MTR_8g077180 81.959 194 32 2 13 203 20 213 4.58e-117 332
MS.gene24072.t1 MTR_8g024050 87.821 156 19 0 20 175 16 171 3.35e-103 296
MS.gene24072.t1 MTR_1g112450 69.231 52 14 1 135 184 63 114 6.41e-18 77.8
MS.gene24072.t1 MTR_2g010430 34.356 163 80 6 39 177 82 241 6.95e-16 74.3
MS.gene24072.t1 MTR_1g112430 89.286 28 3 0 136 163 39 66 3.12e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24072.t1 AT3G53620 84.729 203 31 0 1 203 1 203 1.16e-130 366
MS.gene24072.t1 AT1G01050 89.130 184 20 0 20 203 16 199 4.78e-123 347
MS.gene24072.t1 AT1G01050 89.130 184 20 0 20 203 16 199 4.78e-123 347
MS.gene24072.t1 AT2G46860 86.413 184 25 0 20 203 20 203 9.30e-121 341
MS.gene24072.t1 AT4G01480 79.899 199 39 1 6 203 5 203 2.75e-116 330
MS.gene24072.t1 AT4G01480 79.899 199 39 1 6 203 5 203 2.75e-116 330
MS.gene24072.t1 AT2G18230 81.868 182 33 0 22 203 24 205 7.68e-112 318
MS.gene24072.t1 AT5G09650 34.161 161 83 5 39 177 92 251 3.43e-16 75.5

Find 62 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAAACTGGACTTATTA+AGG 0.226202 1.4:+54872190 MS.gene24072:CDS
TCGCGGTGGGAATCTTGTTT+GGG 0.281569 1.4:-54871111 None:intergenic
TTCGCGGTGGGAATCTTGTT+TGG 0.304545 1.4:-54871112 None:intergenic
TTGAAGATCCTGGGAGCTTC+AGG 0.313776 1.4:-54871320 None:intergenic
TTTCTTCGTGCCAAAGCTAT+TGG 0.320096 1.4:+54873024 MS.gene24072:CDS
ATCTTGTTTGGGGTCTCAAT+TGG 0.355560 1.4:-54871100 None:intergenic
TATGAACTTGACAAGAAAAC+TGG 0.356052 1.4:+54872179 MS.gene24072:CDS
CAACAGGAGCCAGTTCTTCC+TGG 0.361097 1.4:+54872997 MS.gene24072:intron
GTTGTGTATCCTCACAACTA+TGG 0.379576 1.4:+54872317 MS.gene24072:CDS
ACCCATCATTGTTACTTACA+TGG 0.405665 1.4:-54873352 None:intergenic
ATAATAACCAAGACATCAAT+GGG 0.410303 1.4:-54872374 None:intergenic
TTGTTTGGGGTCTCAATTGG+TGG 0.420292 1.4:-54871097 None:intergenic
CATAATAACCAAGACATCAA+TGG 0.424808 1.4:-54872375 None:intergenic
TGATGTCTTGGTTATTATGC+AGG 0.426309 1.4:+54872379 MS.gene24072:CDS
AGAAAGCAGCCAGGAAGAAC+TGG 0.439777 1.4:-54873006 None:intergenic
CCATGGCATGATCTTGAGAT+AGG 0.448676 1.4:+54871205 MS.gene24072:CDS
GCTTACACAATTGAAGATCC+TGG 0.455092 1.4:-54871330 None:intergenic
TCAGATACCTGATCAATCAT+AGG 0.466855 1.4:-54873054 None:intergenic
TCTCATGCCTATGATTGATC+AGG 0.492132 1.4:+54873047 MS.gene24072:CDS
TTGTGTATCCTCACAACTAT+GGG 0.498500 1.4:+54872318 MS.gene24072:CDS
CGCGGTGGGAATCTTGTTTG+GGG 0.501491 1.4:-54871110 None:intergenic
AGGCATGAGACCAATAGCTT+TGG 0.503559 1.4:-54873034 None:intergenic
ACCATCCTCACAAATAGTGC+GGG 0.507168 1.4:-54872348 None:intergenic
CCCCGCACTATTTGTGAGGA+TGG 0.512555 1.4:+54872347 MS.gene24072:CDS
GAAAGGATCCTCTCATTAAG+AGG 0.518691 1.4:-54871151 None:intergenic
TAGGCATTACAATGATATCA+AGG 0.527302 1.4:+54873203 MS.gene24072:CDS
TAGGTGGTTGAAATTGGGAA+AGG 0.533306 1.4:+54872143 MS.gene24072:intron
TGGTGACCCCATTGATGTCT+TGG 0.533354 1.4:+54872367 MS.gene24072:CDS
GGAATGCTCAATAGCTTCAA+AGG 0.545999 1.4:-54873331 None:intergenic
TCCTTTCATCATTGACTAGG+AGG 0.547208 1.4:+54871167 MS.gene24072:CDS
ATCCTCTCATTAAGAGGTGG+AGG 0.555276 1.4:-54871145 None:intergenic
TGGAGGTGAGGTGTAATTCG+CGG 0.565850 1.4:-54871128 None:intergenic
ATGTAGGTCCTGAAGCTCCC+AGG 0.568121 1.4:+54871312 MS.gene24072:intron
GGATCCTTTCATCATTGACT+AGG 0.568164 1.4:+54871164 MS.gene24072:CDS
GATACACAACTGATGAGTAA+AGG 0.570339 1.4:-54872304 None:intergenic
CAAAGGCAGATGAGGAAGGA+AGG 0.576115 1.4:-54873314 None:intergenic
CTCATTAAGAGGTGGAGGTG+AGG 0.579500 1.4:-54871140 None:intergenic
GGTCTGTTGCTGCACACCCA+TGG 0.580873 1.4:+54871188 MS.gene24072:CDS
CTTACACAATTGAAGATCCT+GGG 0.582044 1.4:-54871329 None:intergenic
GTGCTGATGATCCTGAGTAT+AGG 0.582724 1.4:+54873184 MS.gene24072:CDS
ACCTCCTAGTCAATGATGAA+AGG 0.589112 1.4:-54871168 None:intergenic
AATAGCTTCAAAGGCAGATG+AGG 0.596063 1.4:-54873322 None:intergenic
TGAAATTGGGAAAGGAAACA+AGG 0.596735 1.4:+54872151 MS.gene24072:CDS
CCTATCTCAAGATCATGCCA+TGG 0.600294 1.4:-54871205 None:intergenic
CTATCTCAAGATCATGCCAT+GGG 0.603760 1.4:-54871204 None:intergenic
GCTTCAAAGGCAGATGAGGA+AGG 0.607869 1.4:-54873318 None:intergenic
CACCATCCTCACAAATAGTG+CGG 0.608255 1.4:-54872349 None:intergenic
ATTTCAGCTAAACGATGTGG+AGG 0.614529 1.4:-54873231 None:intergenic
CACCTCCACCTCTTAATGAG+AGG 0.615585 1.4:+54871143 MS.gene24072:CDS
TTGGCACGAAGAAAGCAGCC+AGG 0.615889 1.4:-54873015 None:intergenic
TCATTGTAATGCCTATACTC+AGG 0.624794 1.4:-54873195 None:intergenic
GGTGAGGTGTAATTCGCGGT+GGG 0.626302 1.4:-54871124 None:intergenic
TTACAAGAAGAATGAGAACA+AGG 0.636721 1.4:+54873272 MS.gene24072:CDS
AGGTGAGGTGTAATTCGCGG+TGG 0.648278 1.4:-54871125 None:intergenic
CCATCCTCACAAATAGTGCG+GGG 0.650576 1.4:-54872347 None:intergenic
AGGATCCTCTCATTAAGAGG+TGG 0.654306 1.4:-54871148 None:intergenic
CGGATTTCAGCTAAACGATG+TGG 0.654970 1.4:-54873234 None:intergenic
GGGATAAACCCATAGTTGTG+AGG 0.674435 1.4:-54872326 None:intergenic
CAACTGATGAGTAAAGGACC+CGG 0.675914 1.4:-54872298 None:intergenic
TTTCAGCTAAACGATGTGGA+GGG 0.687080 1.4:-54873230 None:intergenic
CATCCTCACAAATAGTGCGG+GGG 0.690869 1.4:-54872346 None:intergenic
TAATAACCAAGACATCAATG+GGG 0.783648 1.4:-54872373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCATCATAAAAGATATTT+TGG - chr1.4:54871632-54871651 None:intergenic 15.0%
!!! TATGATGATTATTTTTTCTA+TGG + chr1.4:54871642-54871661 MS.gene24072:intron 15.0%
!!! TTGAAATATTGATGAATTTT+AGG + chr1.4:54872124-54872143 MS.gene24072:intron 15.0%
!! ACTAATTCTTATGAAATTCA+GGG + chr1.4:54873132-54873151 MS.gene24072:intron 20.0%
!! TACAATTTCACAATAATACA+TGG + chr1.4:54872872-54872891 MS.gene24072:intron 20.0%
!!! AAATATTGATGAATTTTAGG+TGG + chr1.4:54872127-54872146 MS.gene24072:intron 20.0%
!!! AGCAGTTTTATTATAAGAAA+TGG + chr1.4:54871794-54871813 MS.gene24072:intron 20.0%
!!! TTGTGAGTAAATTTTGAATA+TGG + chr1.4:54872840-54872859 MS.gene24072:intron 20.0%
! ATAATAACCAAGACATCAAT+GGG - chr1.4:54872377-54872396 None:intergenic 25.0%
! CACTAATTCTTATGAAATTC+AGG + chr1.4:54873131-54873150 MS.gene24072:intron 25.0%
! GTATAATAATACTCAACTTC+TGG + chr1.4:54872620-54872639 MS.gene24072:intron 25.0%
! TAAGCAATGTTGTTGAAAAA+CGG + chr1.4:54871228-54871247 MS.gene24072:intron 25.0%
! TCATTAGAGCATAATGTATT+TGG + chr1.4:54871262-54871281 MS.gene24072:intron 25.0%
! TTAGAGTAATAGAATTACTC+AGG + chr1.4:54871391-54871410 MS.gene24072:intron 25.0%
! TTTGAACTTGTACATTCTTA+AGG + chr1.4:54872039-54872058 MS.gene24072:intron 25.0%
!! AATACATACATGTTTCCTTT+TGG - chr1.4:54872563-54872582 None:intergenic 25.0%
!!! AATTTTAGGTGGTTGAAATT+GGG + chr1.4:54872138-54872157 MS.gene24072:intron 25.0%
!!! ACATTTTTTACTTTGTATGC+TGG + chr1.4:54871453-54871472 MS.gene24072:intron 25.0%
!!! CTTTTGGAATTCAAAGAATA+CGG - chr1.4:54872547-54872566 None:intergenic 25.0%
!!! TAGTGTTTTTTGAACAATGT+AGG + chr1.4:54871296-54871315 MS.gene24072:intron 25.0%
AAGAAACACCAAAAGTAAAC+AGG + chr1.4:54871675-54871694 MS.gene24072:intron 30.0%
AGAATGTACAAGTTCAAAAG+AGG - chr1.4:54872037-54872056 None:intergenic 30.0%
ATAGCTCAGAAGTAAAGATA+AGG - chr1.4:54872771-54872790 None:intergenic 30.0%
CAAGAAAACTGGACTTATTA+AGG + chr1.4:54872190-54872209 MS.gene24072:CDS 30.0%
CATAATAACCAAGACATCAA+TGG - chr1.4:54872378-54872397 None:intergenic 30.0%
CGTATTCTTTGAATTCCAAA+AGG + chr1.4:54872545-54872564 MS.gene24072:intron 30.0%
GGATTCTGTTATTAGTTATG+TGG + chr1.4:54872517-54872536 MS.gene24072:intron 30.0%
TAATAACCAAGACATCAATG+GGG - chr1.4:54872376-54872395 None:intergenic 30.0%
TAATTGTGATAGAGAGAACA+TGG + chr1.4:54871505-54871524 MS.gene24072:intron 30.0%
TAGGCATTACAATGATATCA+AGG + chr1.4:54873203-54873222 MS.gene24072:CDS 30.0%
TATGAACTTGACAAGAAAAC+TGG + chr1.4:54872179-54872198 MS.gene24072:CDS 30.0%
TATGTTGTGATCTTCATTGA+GGG + chr1.4:54872079-54872098 MS.gene24072:intron 30.0%
TGATTTCAAATGCAAGAAGT+TGG + chr1.4:54872650-54872669 MS.gene24072:intron 30.0%
TGCAATTCTGTTCTCAAATT+TGG + chr1.4:54872496-54872515 MS.gene24072:intron 30.0%
TGGACTTATTAAGGTGATTA+TGG + chr1.4:54872199-54872218 MS.gene24072:intron 30.0%
TGTAATCTTCAAAAAAGCGA+CGG - chr1.4:54873257-54873276 None:intergenic 30.0%
TTACAAGAAGAATGAGAACA+AGG + chr1.4:54873272-54873291 MS.gene24072:CDS 30.0%
TTATGTTGTGATCTTCATTG+AGG + chr1.4:54872078-54872097 MS.gene24072:intron 30.0%
! ATTAAGTCTGATTTGTGTTC+AGG - chr1.4:54871871-54871890 None:intergenic 30.0%
!! CAACGAAAAGTTAATTTGCA+AGG - chr1.4:54872433-54872452 None:intergenic 30.0%
!! GAATTTTAGGTGGTTGAAAT+TGG + chr1.4:54872137-54872156 MS.gene24072:intron 30.0%
!!! ATTCTTTTTTGTGCTACAAC+AGG + chr1.4:54872981-54873000 MS.gene24072:intron 30.0%
!!! TTTTTTTTTTAGCCGACTCA+AGG + chr1.4:54872801-54872820 MS.gene24072:intron 30.0%
AAGAGAAGTTATTGCCATCT+AGG - chr1.4:54873092-54873111 None:intergenic 35.0%
AAGTTATTGCCATCTAGGAA+AGG - chr1.4:54873087-54873106 None:intergenic 35.0%
AATGGCAACAAGTACAACAA+TGG - chr1.4:54872243-54872262 None:intergenic 35.0%
ACTACGTGAATCATCAACTA+AGG - chr1.4:54871702-54871721 None:intergenic 35.0%
AGATAAGGCTCAATATGTCA+AGG - chr1.4:54872756-54872775 None:intergenic 35.0%
AGTTATTGCCATCTAGGAAA+GGG - chr1.4:54873086-54873105 None:intergenic 35.0%
CTACGTGAATCATCAACTAA+GGG - chr1.4:54871701-54871720 None:intergenic 35.0%
CTGCTTAACTAGATAAAGCA+AGG - chr1.4:54871779-54871798 None:intergenic 35.0%
CTTACACAATTGAAGATCCT+GGG - chr1.4:54871332-54871351 None:intergenic 35.0%
GAACTTGTACATTCTTAAGG+TGG + chr1.4:54872042-54872061 MS.gene24072:intron 35.0%
GATACACAACTGATGAGTAA+AGG - chr1.4:54872307-54872326 None:intergenic 35.0%
GATTGTTTCCAATCACAACT+TGG + chr1.4:54872005-54872024 MS.gene24072:intron 35.0%
GCTGGAATGAAATTTCGTAA+TGG + chr1.4:54871471-54871490 MS.gene24072:intron 35.0%
TATATTGCTGACCTGTTGAA+TGG + chr1.4:54871824-54871843 MS.gene24072:intron 35.0%
TCAGATACCTGATCAATCAT+AGG - chr1.4:54873057-54873076 None:intergenic 35.0%
TCATTGTAATGCCTATACTC+AGG - chr1.4:54873198-54873217 None:intergenic 35.0%
TGAAATTGGGAAAGGAAACA+AGG + chr1.4:54872151-54872170 MS.gene24072:CDS 35.0%
TGATGTCTTGGTTATTATGC+AGG + chr1.4:54872379-54872398 MS.gene24072:CDS 35.0%
TTGTGTATCCTCACAACTAT+GGG + chr1.4:54872318-54872337 MS.gene24072:CDS 35.0%
TTTCAAATGCAAGAAGTTGG+TGG + chr1.4:54872653-54872672 MS.gene24072:intron 35.0%
! CTAAGCATGCTTTTATGTGT+AGG + chr1.4:54872271-54872290 MS.gene24072:intron 35.0%
! CTACACATAAAAGCATGCTT+AGG - chr1.4:54872273-54872292 None:intergenic 35.0%
!! ACATTTTGATCACCTTGAGT+CGG - chr1.4:54872816-54872835 None:intergenic 35.0%
AATAGCTTCAAAGGCAGATG+AGG - chr1.4:54873325-54873344 None:intergenic 40.0%
ACCTCCTAGTCAATGATGAA+AGG - chr1.4:54871171-54871190 None:intergenic 40.0%
AGTAATGCTTGTGCGCTATA+GGG + chr1.4:54871895-54871914 MS.gene24072:intron 40.0%
ATTTCAGCTAAACGATGTGG+AGG - chr1.4:54873234-54873253 None:intergenic 40.0%
CAACAGGTCAGCAATATAAC+AGG - chr1.4:54871822-54871841 None:intergenic 40.0%
CTATCTCAAGATCATGCCAT+GGG - chr1.4:54871207-54871226 None:intergenic 40.0%
CTTCAATTGTGTAAGCATGC+TGG + chr1.4:54871337-54871356 MS.gene24072:intron 40.0%
GAAACATTCCCTTTCCTAGA+TGG + chr1.4:54873075-54873094 MS.gene24072:intron 40.0%
GAAAGGATCCTCTCATTAAG+AGG - chr1.4:54871154-54871173 None:intergenic 40.0%
GCTTACACAATTGAAGATCC+TGG - chr1.4:54871333-54871352 None:intergenic 40.0%
GGAATGCTCAATAGCTTCAA+AGG - chr1.4:54873334-54873353 None:intergenic 40.0%
GGTTAAGCGTTAAGCATGTT+GGG + chr1.4:54871916-54871935 MS.gene24072:intron 40.0%
GTTGTGTATCCTCACAACTA+TGG + chr1.4:54872317-54872336 MS.gene24072:CDS 40.0%
GTTTCCAATCACAACTTGGA+CGG + chr1.4:54872009-54872028 MS.gene24072:intron 40.0%
TAGGTGGTTGAAATTGGGAA+AGG + chr1.4:54872143-54872162 MS.gene24072:intron 40.0%
TAGTAATGCTTGTGCGCTAT+AGG + chr1.4:54871894-54871913 MS.gene24072:intron 40.0%
TCTCATGCCTATGATTGATC+AGG + chr1.4:54873047-54873066 MS.gene24072:CDS 40.0%
TTTCAGCTAAACGATGTGGA+GGG - chr1.4:54873233-54873252 None:intergenic 40.0%
TTTCTTCGTGCCAAAGCTAT+TGG + chr1.4:54873024-54873043 MS.gene24072:CDS 40.0%
! ACTAAGGGCCTGTTTACTTT+TGG - chr1.4:54871686-54871705 None:intergenic 40.0%
! ATCTTGTTTGGGGTCTCAAT+TGG - chr1.4:54871103-54871122 None:intergenic 40.0%
! CTTGCATTTGAAATCACAGC+TGG - chr1.4:54872646-54872665 None:intergenic 40.0%
! GGATCCTTTCATCATTGACT+AGG + chr1.4:54871164-54871183 MS.gene24072:CDS 40.0%
! TCCTTTCATCATTGACTAGG+AGG + chr1.4:54871167-54871186 MS.gene24072:CDS 40.0%
!! CTTTTATGTGTAGGTTGACC+GGG + chr1.4:54872280-54872299 MS.gene24072:intron 40.0%
!! GCTTTTATGTGTAGGTTGAC+CGG + chr1.4:54872279-54872298 MS.gene24072:intron 40.0%
ACCATCCTCACAAATAGTGC+GGG - chr1.4:54872351-54872370 None:intergenic 45.0%
AGGATCCTCTCATTAAGAGG+TGG - chr1.4:54871151-54871170 None:intergenic 45.0%
AGGCATGAGACCAATAGCTT+TGG - chr1.4:54873037-54873056 None:intergenic 45.0%
ATCCTCTCATTAAGAGGTGG+AGG - chr1.4:54871148-54871167 None:intergenic 45.0%
CAACTGATGAGTAAAGGACC+CGG - chr1.4:54872301-54872320 None:intergenic 45.0%
CACCATCCTCACAAATAGTG+CGG - chr1.4:54872352-54872371 None:intergenic 45.0%
CCATGGCATGATCTTGAGAT+AGG + chr1.4:54871205-54871224 MS.gene24072:CDS 45.0%
CCTATCTCAAGATCATGCCA+TGG - chr1.4:54871208-54871227 None:intergenic 45.0%
CGGATTTCAGCTAAACGATG+TGG - chr1.4:54873237-54873256 None:intergenic 45.0%
GCATGCTTAGGAACAGCAAA+TGG - chr1.4:54872261-54872280 None:intergenic 45.0%
GGGATAAACCCATAGTTGTG+AGG - chr1.4:54872329-54872348 None:intergenic 45.0%
GGGTTAAGCGTTAAGCATGT+TGG + chr1.4:54871915-54871934 MS.gene24072:intron 45.0%
TCAACACGCATCCATTCAAC+AGG - chr1.4:54871838-54871857 None:intergenic 45.0%
! GTGCTGATGATCCTGAGTAT+AGG + chr1.4:54873184-54873203 MS.gene24072:CDS 45.0%
! TTGTTTGGGGTCTCAATTGG+TGG - chr1.4:54871100-54871119 None:intergenic 45.0%
AGAAAGCAGCCAGGAAGAAC+TGG - chr1.4:54873009-54873028 None:intergenic 50.0%
CAAAGGCAGATGAGGAAGGA+AGG - chr1.4:54873317-54873336 None:intergenic 50.0%
CACCTCCACCTCTTAATGAG+AGG + chr1.4:54871143-54871162 MS.gene24072:CDS 50.0%
CATCCTCACAAATAGTGCGG+GGG - chr1.4:54872349-54872368 None:intergenic 50.0%
CCATCCTCACAAATAGTGCG+GGG - chr1.4:54872350-54872369 None:intergenic 50.0%
CTCATTAAGAGGTGGAGGTG+AGG - chr1.4:54871143-54871162 None:intergenic 50.0%
GCTTCAAAGGCAGATGAGGA+AGG - chr1.4:54873321-54873340 None:intergenic 50.0%
GGAACCGTCCAAGTTGTGAT+TGG - chr1.4:54872016-54872035 None:intergenic 50.0%
TATCCCCCGCACTATTTGTG+AGG + chr1.4:54872343-54872362 MS.gene24072:CDS 50.0%
TGGAGGTGAGGTGTAATTCG+CGG - chr1.4:54871131-54871150 None:intergenic 50.0%
TGGTGACCCCATTGATGTCT+TGG + chr1.4:54872367-54872386 MS.gene24072:CDS 50.0%
TTCGCGGTGGGAATCTTGTT+TGG - chr1.4:54871115-54871134 None:intergenic 50.0%
TTGAAGATCCTGGGAGCTTC+AGG - chr1.4:54871323-54871342 None:intergenic 50.0%
! TCGCGGTGGGAATCTTGTTT+GGG - chr1.4:54871114-54871133 None:intergenic 50.0%
AGGTGAGGTGTAATTCGCGG+TGG - chr1.4:54871128-54871147 None:intergenic 55.0%
ATGTAGGTCCTGAAGCTCCC+AGG + chr1.4:54871312-54871331 MS.gene24072:intron 55.0%
CAACAGGAGCCAGTTCTTCC+TGG + chr1.4:54872997-54873016 MS.gene24072:intron 55.0%
CCCCGCACTATTTGTGAGGA+TGG + chr1.4:54872347-54872366 MS.gene24072:CDS 55.0%
GGTGAGGTGTAATTCGCGGT+GGG - chr1.4:54871127-54871146 None:intergenic 55.0%
TTGGCACGAAGAAAGCAGCC+AGG - chr1.4:54873018-54873037 None:intergenic 55.0%
! CGCGGTGGGAATCTTGTTTG+GGG - chr1.4:54871113-54871132 None:intergenic 55.0%
GGTCTGTTGCTGCACACCCA+TGG + chr1.4:54871188-54871207 MS.gene24072:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 54871091 54873359 54871091 ID=MS.gene24072
chr1.4 mRNA 54871091 54873359 54871091 ID=MS.gene24072.t1;Parent=MS.gene24072
chr1.4 exon 54871091 54871226 54871091 ID=MS.gene24072.t1.exon1;Parent=MS.gene24072.t1
chr1.4 CDS 54871091 54871226 54871091 ID=cds.MS.gene24072.t1;Parent=MS.gene24072.t1
chr1.4 exon 54871318 54871346 54871318 ID=MS.gene24072.t1.exon2;Parent=MS.gene24072.t1
chr1.4 CDS 54871318 54871346 54871318 ID=cds.MS.gene24072.t1;Parent=MS.gene24072.t1
chr1.4 exon 54872146 54872211 54872146 ID=MS.gene24072.t1.exon3;Parent=MS.gene24072.t1
chr1.4 CDS 54872146 54872211 54872146 ID=cds.MS.gene24072.t1;Parent=MS.gene24072.t1
chr1.4 exon 54872293 54872400 54872293 ID=MS.gene24072.t1.exon4;Parent=MS.gene24072.t1
chr1.4 CDS 54872293 54872400 54872293 ID=cds.MS.gene24072.t1;Parent=MS.gene24072.t1
chr1.4 exon 54873003 54873068 54873003 ID=MS.gene24072.t1.exon5;Parent=MS.gene24072.t1
chr1.4 CDS 54873003 54873068 54873003 ID=cds.MS.gene24072.t1;Parent=MS.gene24072.t1
chr1.4 exon 54873153 54873359 54873153 ID=MS.gene24072.t1.exon6;Parent=MS.gene24072.t1
chr1.4 CDS 54873153 54873359 54873153 ID=cds.MS.gene24072.t1;Parent=MS.gene24072.t1
Gene Sequence

>MS.gene24072

ATGGCTCCACCAATTGAGACCCCAAACAAGATTCCCACCGCGAATTACACCTCACCTCCACCTCTTAATGAGAGGATCCTTTCATCATTGACTAGGAGGTCTGTTGCTGCACACCCATGGCATGATCTTGAGATAGGTAAGCAATGTTGTTGAAAAACGGTGATATATTGATCATTAGAGCATAATGTATTTGGTATTCTAATAATAGTGTTTTTTGAACAATGTAGGTCCTGAAGCTCCCAGGATCTTCAATTGTGTAAGCATGCTGGACACTAACTTACAATTAGTTGTATATGTTTCTTAGAGTAATAGAATTACTCAGGAGACTATTTACTTTATAACAATGTTTTCAATTTTCATCTACATTTTTTACTTTGTATGCTGGAATGAAATTTCGTAATGGATTTTCTTTTTTAATTGTGATAGAGAGAACATGGAAGCTAACTAGAGAAAATGCATTTTTGAAAACAATGTTTTGACGCTTTACAGAGTTTTCAAAAATATTCAATATATTTTTAAAATGTATCTTCAGAAACGTCCAAAATATCTTTTATGATGATTATTTTTTCTATGGAAATGAAAACAAGAAACACCAAAAGTAAACAGGCCCTTAGTTGATGATTCACGTAGTTTTTAGCTACTGACAAACATTGAACATATTGTATTGTTCTGATTCTGTTTTCATCCTTGCTTTATCTAGTTAAGCAGTTTTATTATAAGAAATGGCTCCTGTTATATTGCTGACCTGTTGAATGGATGCGTGTTGAATGTTGACTACCTGAACACAAATCAGACTTAATTTGTAGTAATGCTTGTGCGCTATAGGGTTAAGCGTTAAGCATGTTGGGCAGTATGTCTTTATTATTTATTTGTTTTTCAAAAAAAAAATCTCAGCTTTTTCAAAATTTCAATGCGATTGTTTCCAATCACAACTTGGACGGTTCCTCTTTTGAACTTGTACATTCTTAAGGTGGTATGTTATGATGTTTATGTTGTGATCTTCATTGAGGGATCTGACTTGATTACTTCATTTTTGAAATATTGATGAATTTTAGGTGGTTGAAATTGGGAAAGGAAACAAGGTGAAATATGAACTTGACAAGAAAACTGGACTTATTAAGGTGATTATGGTTGCTTAGCTCTGTTTTTCCATTGTTGTACTTGTTGCCATTTGCTGTTCCTAAGCATGCTTTTATGTGTAGGTTGACCGGGTCCTTTACTCATCAGTTGTGTATCCTCACAACTATGGGTTTATCCCCCGCACTATTTGTGAGGATGGTGACCCCATTGATGTCTTGGTTATTATGCAGGTACTTTTGTTTAAATATTGTTCACTTCTCCTTGCAAATTAACTTTTCGTTGTGTGATAATTGCATGAGAAGATCAAATGTGCACAACATATTTGTGCAATTCTGTTCTCAAATTTGGATTCTGTTATTAGTTATGTGGTTTGCCGTATTCTTTGAATTCCAAAAGGAAACATGTATGTATTGAAATTTTCTGAACTCTGTCAATATGTTTCAAAAAGTGTATAATAATACTCAACTTCTGGCCAGCTGTGATTTCAAATGCAAGAAGTTGGTGGTTCTCAACATTTAAATTAATATATTTTGATGATTCTAGTATCTTATAAAGTAATCTTCATAATTTTTTTTAAAAAATCCTTGACATATTGAGCCTTATCTTTACTTCTGAGCTATGCATTGAATTTTTTTTTTTTAGCCGACTCAAGGTGATCAAAATGTGCAATTGTGAGTAAATTTTGAATATGGCTACTGCAATACAATTTCACAATAATACATGGTATCAGTTCAAAAAGAGCATGAACTAATAAGCTGACTTCATCTAGTATTAGTCTATTATATGCATCTTTACTACTTTGCAATACTAATTCTTTTTTGTGCTACAACAGGAGCCAGTTCTTCCTGGCTGCTTTCTTCGTGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGTATCTGAAACATTCCCTTTCCTAGATGGCAATAACTTCTCTTTTGATCATTATCGATCAATCACTAATTCTTATGAAATTCAGGGTGAGAAAGATGACAAGATCATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTCCCTCCACATCGTTTAGCTGAAATCCGTCGCTTTTTTGAAGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTTAACGACTTCCTTCCTTCCTCATCTGCCTTTGAAGCTATTGAGCATTCCATGTAA
Protein sequence

>MS.gene24072.t1

MAPPIETPNKIPTANYTSPPPLNERILSSLTRRSVAAHPWHDLEIGPEAPRIFNCVVEIGKGNKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTICEDGDPIDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPSSSAFEAIEHSM