AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053330.t1 MTR_1g041390 95.114 307 14 1 1 307 1 306 0.0 575
MS.gene053330.t1 MTR_1g041385 80.782 307 58 1 1 307 1 306 3.25e-176 489
MS.gene053330.t1 MTR_6g082500 45.631 309 149 6 6 306 15 312 3.16e-82 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053330.t1 AT5G43860 60.518 309 113 3 3 302 4 312 1.01e-137 392
MS.gene053330.t1 AT1G19670 44.863 292 155 5 8 296 18 306 5.49e-82 251

Find 58 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCTAACTTGTCAAAATT+TGG 0.166079 1.3:-24576877 None:intergenic
GTTGCAATCAAGAGAGATTT+TGG 0.211333 1.3:-24575357 None:intergenic
GATATGGCAACATTGGTTAT+TGG 0.252852 1.3:+24577075 MS.gene053330:CDS
GCAACATTGGTTATTGGTTC+TGG 0.258641 1.3:+24577081 MS.gene053330:CDS
AACTGGATCAACTCCTATTA+TGG 0.288193 1.3:-24576983 None:intergenic
TTTCCTCTCTTAGTTGTATA+CGG 0.291769 1.3:+24576756 MS.gene053330:intron
CTGTAGCTGCAATAACAAAT+TGG 0.301199 1.3:+24576812 MS.gene053330:CDS
TTGGTTATTGGTTCTGGTTT+AGG 0.306609 1.3:+24577087 MS.gene053330:CDS
TCATTCATTTGATTACGATA+TGG 0.311804 1.3:+24577059 MS.gene053330:CDS
CCTTTATCCATTCCATCAAC+TGG 0.334016 1.3:-24577000 None:intergenic
GCGAATGTGAGAAACCTTCT+TGG 0.345248 1.3:+24577178 MS.gene053330:CDS
GTTTCCTCCTTGTGCACCTA+AGG 0.368936 1.3:+24577131 MS.gene053330:CDS
GATATTTGTTGGAGGAGTTA+TGG 0.375257 1.3:+24577317 MS.gene053330:CDS
TGTTCACGTACACAACAATA+TGG 0.376449 1.3:+24575245 MS.gene053330:CDS
TAAATCTCTTCAGTTATATC+AGG 0.384754 1.3:-24576787 None:intergenic
GATGATACTAAAGGAGTTAG+AGG 0.384847 1.3:+24577243 MS.gene053330:CDS
CCAGTTGATGGAATGGATAA+AGG 0.394237 1.3:+24577000 MS.gene053330:CDS
ATCAACCTTTAGTAGCTTAG+TGG 0.402980 1.3:-24575219 None:intergenic
ATTGAGCATGTTGCTTCTCA+TGG 0.404351 1.3:+24575459 MS.gene053330:CDS
CTTCATTGTCATTGCTCCTC+AGG 0.404622 1.3:+24575482 MS.gene053330:CDS
CCTCCAACAAATATCCTCAT+AGG 0.439805 1.3:-24577309 None:intergenic
GGGAAATCTCCACCTTCAAT+AGG 0.443716 1.3:-24575381 None:intergenic
AGTTATTGTTTATGTAAGAA+TGG 0.447160 1.3:+24577273 MS.gene053330:CDS
TTGATTGCAACTCCTATTGA+AGG 0.448310 1.3:+24575369 MS.gene053330:CDS
TGAGGAACATAGGTGAGAAT+TGG 0.464534 1.3:-24577039 None:intergenic
ATAGGAGTTGATCCAGTTGA+TGG 0.466790 1.3:+24576988 MS.gene053330:CDS
TTTCCTCCTTGTGCACCTAA+GGG 0.470069 1.3:+24577132 MS.gene053330:CDS
TTATGGTCATGTTGATATGT+TGG 0.487257 1.3:+24577218 MS.gene053330:CDS
AAACCTATGAGGATATTTGT+TGG 0.491421 1.3:+24577306 MS.gene053330:CDS
TCTTAGTTGTATACGGTGGC+TGG 0.500060 1.3:+24576763 MS.gene053330:intron
ATAACAAATTGGCTATCTAA+AGG 0.506043 1.3:+24576823 MS.gene053330:CDS
TATGTAAGAATGGTGAATCA+AGG 0.508849 1.3:+24577283 MS.gene053330:CDS
TTTGACAAGTTAGCACTTGG+TGG 0.520012 1.3:+24576883 MS.gene053330:CDS
TGATTACGATATGGCAACAT+TGG 0.527494 1.3:+24577068 MS.gene053330:CDS
TCCTCATGATTGACACCCTT+AGG 0.545231 1.3:-24577147 None:intergenic
AGTTGATCCAGTTGATGGAA+TGG 0.545451 1.3:+24576993 MS.gene053330:CDS
TTCTTGAAAGCTTATTTGCA+TGG 0.546906 1.3:+24577345 MS.gene053330:CDS
CTATACCACTAAGCTACTAA+AGG 0.552949 1.3:+24575214 MS.gene053330:CDS
TAATCAAATTTCATCTCAAG+AGG 0.556121 1.3:-24577414 None:intergenic
ATATCGTAATCAAATGAATG+AGG 0.572490 1.3:-24577057 None:intergenic
ATCAAATGAATGAGGAACAT+AGG 0.578505 1.3:-24577049 None:intergenic
CCTATGAGGATATTTGTTGG+AGG 0.580420 1.3:+24577309 MS.gene053330:CDS
GTGAATCAAGGAAACCTATG+AGG 0.584276 1.3:+24577295 MS.gene053330:CDS
GGAACATAGGTGAGAATTGG+TGG 0.587964 1.3:-24577036 None:intergenic
GTGCACAAGGAGGAAACAAA+GGG 0.590331 1.3:-24577125 None:intergenic
TTAGCCACAAAATACCAAGA+AGG 0.593683 1.3:-24577192 None:intergenic
TTGGTGGTCATAGTCGCGGC+GGG 0.594950 1.3:+24576899 MS.gene053330:CDS
ATTGCAACTCCTATTGAAGG+TGG 0.601589 1.3:+24575372 MS.gene053330:CDS
GGTGCACAAGGAGGAAACAA+AGG 0.615241 1.3:-24577126 None:intergenic
ATGATACTAAAGGAGTTAGA+GGG 0.619958 1.3:+24577244 MS.gene053330:CDS
TTATTTGCATGGTGATAATG+TGG 0.630656 1.3:+24577356 MS.gene053330:CDS
CCTCTCTTAGTTGTATACGG+TGG 0.634151 1.3:+24576759 MS.gene053330:intron
ACCTAAGGGTGTCAATCATG+AGG 0.653818 1.3:+24577146 MS.gene053330:CDS
CTTGGTGGTCATAGTCGCGG+CGG 0.660141 1.3:+24576898 MS.gene053330:CDS
GCACTTGGTGGTCATAGTCG+CGG 0.661508 1.3:+24576895 MS.gene053330:CDS
TTGACACCCTTAGGTGCACA+AGG 0.662635 1.3:-24577138 None:intergenic
ATGTTGGATGATGATACTAA+AGG 0.689048 1.3:+24577234 MS.gene053330:CDS
ACACCCTTAGGTGCACAAGG+AGG 0.758140 1.3:-24577135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTCTTATAAAATCATA+AGG - chr1.3:24576239-24576258 None:intergenic 10.0%
!! AATTTCTTATAAAATCATAA+GGG - chr1.3:24576238-24576257 None:intergenic 10.0%
!! ATATTATAACATAAGAAAAT+TGG + chr1.3:24576122-24576141 MS.gene053330:intron 10.0%
!! TAATCATTAAAAACATTATT+AGG + chr1.3:24575647-24575666 MS.gene053330:intron 10.0%
!! AACAATAAAATGTTTATTTG+GGG - chr1.3:24576076-24576095 None:intergenic 15.0%
!! ACAACAATAAAATGTTTATT+TGG - chr1.3:24576078-24576097 None:intergenic 15.0%
!! ATTTCTTATAAAATCATAAG+GGG - chr1.3:24576237-24576256 None:intergenic 15.0%
!! CAACAATAAAATGTTTATTT+GGG - chr1.3:24576077-24576096 None:intergenic 15.0%
!! TACATATTAAAATGTCAAAT+AGG - chr1.3:24575514-24575533 None:intergenic 15.0%
!!! TTTTAATGATTATGTGAAAT+TGG - chr1.3:24575639-24575658 None:intergenic 15.0%
!! AAATTGAAATTTGAAGATGT+TGG - chr1.3:24576168-24576187 None:intergenic 20.0%
!! ACAAGAATTGAAATGAAATA+TGG - chr1.3:24576322-24576341 None:intergenic 20.0%
!! ACAATAAAATGTTTATTTGG+GGG - chr1.3:24576075-24576094 None:intergenic 20.0%
!! ACATTATTAGGAGAATATAA+TGG + chr1.3:24575659-24575678 MS.gene053330:intron 20.0%
!! AGTTATTGTTTATGTAAGAA+TGG + chr1.3:24577273-24577292 MS.gene053330:CDS 20.0%
!! CACTTTAAATACACAAAATA+AGG + chr1.3:24576420-24576439 MS.gene053330:intron 20.0%
!! TAGAAAATTGTAGAATCATA+GGG + chr1.3:24575766-24575785 MS.gene053330:intron 20.0%
!!! TAAATTGTGAGTTTTTTAAG+TGG - chr1.3:24576356-24576375 None:intergenic 20.0%
!!! TCAAAATTTGGTTTTATGTT+TGG - chr1.3:24576868-24576887 None:intergenic 20.0%
!!! TCCATTAAGTCTTATAAATA+AGG - chr1.3:24575913-24575932 None:intergenic 20.0%
!!! TCCTTATTTATAAGACTTAA+TGG + chr1.3:24575909-24575928 MS.gene053330:intron 20.0%
!!! TTTCTTTTTTGTTTTTTGTC+AGG - chr1.3:24576615-24576634 None:intergenic 20.0%
! AATTCGTTGTAGTGAAAAAA+TGG - chr1.3:24576210-24576229 None:intergenic 25.0%
! ATAACAAATTGGCTATCTAA+AGG + chr1.3:24576823-24576842 MS.gene053330:CDS 25.0%
! ATATCGTAATCAAATGAATG+AGG - chr1.3:24577060-24577079 None:intergenic 25.0%
! ATCTTAGAAAACATGTCTAA+TGG + chr1.3:24576451-24576470 MS.gene053330:intron 25.0%
! CAATAAAATGTTTATTTGGG+GGG - chr1.3:24576074-24576093 None:intergenic 25.0%
! GTAGAAAATTGTAGAATCAT+AGG + chr1.3:24575765-24575784 MS.gene053330:intron 25.0%
! TAAATCTCTTCAGTTATATC+AGG - chr1.3:24576790-24576809 None:intergenic 25.0%
! TAATCAAATTTCATCTCAAG+AGG - chr1.3:24577417-24577436 None:intergenic 25.0%
! TCATTCATTTGATTACGATA+TGG + chr1.3:24577059-24577078 MS.gene053330:CDS 25.0%
! TGTTGTTAGAAAATTTGAGT+TGG + chr1.3:24576092-24576111 MS.gene053330:intron 25.0%
! TTATAAGAAATTTCAGTGCT+AGG + chr1.3:24576246-24576265 MS.gene053330:intron 25.0%
!! CTAAAATTTTCAGCCATAAT+AGG + chr1.3:24576970-24576989 MS.gene053330:CDS 25.0%
!! TAAGATTCTTAGGATTTTGT+TGG - chr1.3:24575993-24576012 None:intergenic 25.0%
!!! AAATTTGGTTTTATGTTTGG+TGG - chr1.3:24576865-24576884 None:intergenic 25.0%
!!! GTTAGTAATGTTTTTGAAAC+TGG + chr1.3:24575188-24575207 MS.gene053330:CDS 25.0%
!!! TAGGATTAGTTAATAGTTAG+TGG - chr1.3:24575965-24575984 None:intergenic 25.0%
!!! TAGGATTTTGTTGGTTAATT+AGG - chr1.3:24575984-24576003 None:intergenic 25.0%
AAAAAATGGTGCAATGTCTA+TGG - chr1.3:24576196-24576215 None:intergenic 30.0%
AAACCTATGAGGATATTTGT+TGG + chr1.3:24577306-24577325 MS.gene053330:CDS 30.0%
ATCAAATGAATGAGGAACAT+AGG - chr1.3:24577052-24577071 None:intergenic 30.0%
ATCCTAAGAATCTTAACACA+TGG + chr1.3:24575998-24576017 MS.gene053330:intron 30.0%
ATGATACTAAAGGAGTTAGA+GGG + chr1.3:24577244-24577263 MS.gene053330:CDS 30.0%
ATGTTGGATGATGATACTAA+AGG + chr1.3:24577234-24577253 MS.gene053330:CDS 30.0%
CATGTAGAAAAAGTAGAAGT+GGG - chr1.3:24575404-24575423 None:intergenic 30.0%
GGAAAAAATTGGTTGCAATT+TGG - chr1.3:24576706-24576725 None:intergenic 30.0%
TAGAACTGTTGGGAAAAAAT+TGG - chr1.3:24576717-24576736 None:intergenic 30.0%
TAGTTAATAGTTAGTGGAGT+TGG - chr1.3:24575959-24575978 None:intergenic 30.0%
TATAGGTCAATCAAACACAT+GGG + chr1.3:24576279-24576298 MS.gene053330:intron 30.0%
TATGTAAGAATGGTGAATCA+AGG + chr1.3:24577283-24577302 MS.gene053330:CDS 30.0%
TTAGCACACATGAACTATAT+AGG - chr1.3:24575305-24575324 None:intergenic 30.0%
TTATGGTCATGTTGATATGT+TGG + chr1.3:24577218-24577237 MS.gene053330:CDS 30.0%
TTCACCAAAATAGAACTGTT+GGG - chr1.3:24576727-24576746 None:intergenic 30.0%
TTCTTGAAAGCTTATTTGCA+TGG + chr1.3:24577345-24577364 MS.gene053330:CDS 30.0%
TTTCACCAAAATAGAACTGT+TGG - chr1.3:24576728-24576747 None:intergenic 30.0%
TTTCCTCTCTTAGTTGTATA+CGG + chr1.3:24576756-24576775 MS.gene053330:intron 30.0%
! AGTGCTAACTTGTCAAAATT+TGG - chr1.3:24576880-24576899 None:intergenic 30.0%
! TATTTTGTGGCTAAGGATTA+TGG + chr1.3:24577201-24577220 MS.gene053330:CDS 30.0%
! TTATTTGCATGGTGATAATG+TGG + chr1.3:24577356-24577375 MS.gene053330:CDS 30.0%
! TTTTCCCAACAGTTCTATTT+TGG + chr1.3:24576720-24576739 MS.gene053330:intron 30.0%
!! AATTTTGACAAGTTAGCACT+TGG + chr1.3:24576880-24576899 MS.gene053330:CDS 30.0%
AAATGTTTATTTGGGGGGTT+TGG - chr1.3:24576069-24576088 None:intergenic 35.0%
AACTGGATCAACTCCTATTA+TGG - chr1.3:24576986-24577005 None:intergenic 35.0%
AGATTCACACACATAATGTG+TGG - chr1.3:24576579-24576598 None:intergenic 35.0%
AGCCATGTGTTAAGATTCTT+AGG - chr1.3:24576003-24576022 None:intergenic 35.0%
ATCAACCTTTAGTAGCTTAG+TGG - chr1.3:24575222-24575241 None:intergenic 35.0%
CCATGTAGAAAAAGTAGAAG+TGG - chr1.3:24575405-24575424 None:intergenic 35.0%
CTATACCACTAAGCTACTAA+AGG + chr1.3:24575214-24575233 MS.gene053330:CDS 35.0%
CTGTAGCTGCAATAACAAAT+TGG + chr1.3:24576812-24576831 MS.gene053330:CDS 35.0%
GATGATACTAAAGGAGTTAG+AGG + chr1.3:24577243-24577262 MS.gene053330:CDS 35.0%
GTATAGGTCAATCAAACACA+TGG + chr1.3:24576278-24576297 MS.gene053330:intron 35.0%
TGATTACGATATGGCAACAT+TGG + chr1.3:24577068-24577087 MS.gene053330:CDS 35.0%
TGTTCACGTACACAACAATA+TGG + chr1.3:24575245-24575264 MS.gene053330:CDS 35.0%
TTAGCCACAAAATACCAAGA+AGG - chr1.3:24577195-24577214 None:intergenic 35.0%
TTGATTGCAACTCCTATTGA+AGG + chr1.3:24575369-24575388 MS.gene053330:CDS 35.0%
! ACAATTTTCTACACTGTGCA+AGG - chr1.3:24575757-24575776 None:intergenic 35.0%
! GAAACCTTCTTGGTATTTTG+TGG + chr1.3:24577188-24577207 MS.gene053330:CDS 35.0%
! GATATGGCAACATTGGTTAT+TGG + chr1.3:24577075-24577094 MS.gene053330:CDS 35.0%
! GATATTTGTTGGAGGAGTTA+TGG + chr1.3:24577317-24577336 MS.gene053330:CDS 35.0%
! GTTGCAATCAAGAGAGATTT+TGG - chr1.3:24575360-24575379 None:intergenic 35.0%
! TTCTTGGTATTTTGTGGCTA+AGG + chr1.3:24577194-24577213 MS.gene053330:CDS 35.0%
!! TTGGTTATTGGTTCTGGTTT+AGG + chr1.3:24577087-24577106 MS.gene053330:CDS 35.0%
!!! CCACTTCTACTTTTTCTACA+TGG + chr1.3:24575402-24575421 MS.gene053330:CDS 35.0%
!!! TTTTTTGTCAGGTAGCCTAT+TGG - chr1.3:24576604-24576623 None:intergenic 35.0%
ATTGCAACTCCTATTGAAGG+TGG + chr1.3:24575372-24575391 MS.gene053330:CDS 40.0%
CCTCCAACAAATATCCTCAT+AGG - chr1.3:24577312-24577331 None:intergenic 40.0%
CCTTTATCCATTCCATCAAC+TGG - chr1.3:24577003-24577022 None:intergenic 40.0%
CTACCAACTGGCTACAATTA+CGG - chr1.3:24576500-24576519 None:intergenic 40.0%
GTCAAATAGGAACTAACCTG+AGG - chr1.3:24575501-24575520 None:intergenic 40.0%
GTGAATCAAGGAAACCTATG+AGG + chr1.3:24577295-24577314 MS.gene053330:CDS 40.0%
TACCAACTGGCTACAATTAC+GGG - chr1.3:24576499-24576518 None:intergenic 40.0%
TATCACGGACATTATGTGCA+GGG + chr1.3:24576521-24576540 MS.gene053330:intron 40.0%
TGAGGAACATAGGTGAGAAT+TGG - chr1.3:24577042-24577061 None:intergenic 40.0%
TGTGTGTGAATCTAGCCAAT+AGG + chr1.3:24576586-24576605 MS.gene053330:intron 40.0%
TTTGACAAGTTAGCACTTGG+TGG + chr1.3:24576883-24576902 MS.gene053330:CDS 40.0%
! ATAGGAGTTGATCCAGTTGA+TGG + chr1.3:24576988-24577007 MS.gene053330:CDS 40.0%
! ATTGAGCATGTTGCTTCTCA+TGG + chr1.3:24575459-24575478 MS.gene053330:CDS 40.0%
! ATTTTCTACACTGTGCAAGG+AGG - chr1.3:24575754-24575773 None:intergenic 40.0%
! CCTATGAGGATATTTGTTGG+AGG + chr1.3:24577309-24577328 MS.gene053330:CDS 40.0%
! GCAATCAAGAGAGATTTTGG+TGG - chr1.3:24575357-24575376 None:intergenic 40.0%
! TGCTAGGACTATGAGAGTAT+AGG + chr1.3:24576262-24576281 MS.gene053330:intron 40.0%
!! AGTTGATCCAGTTGATGGAA+TGG + chr1.3:24576993-24577012 MS.gene053330:CDS 40.0%
!! ATCAAGAGAGATTTTGGTGG+TGG - chr1.3:24575354-24575373 None:intergenic 40.0%
!! CCAGTTGATGGAATGGATAA+AGG + chr1.3:24577000-24577019 MS.gene053330:CDS 40.0%
!! GCAACATTGGTTATTGGTTC+TGG + chr1.3:24577081-24577100 MS.gene053330:CDS 40.0%
!! GTTTGCAAGAAGCACTTCTA+GGG + chr1.3:24575550-24575569 MS.gene053330:intron 40.0%
!! TGTTTGCAAGAAGCACTTCT+AGG + chr1.3:24575549-24575568 MS.gene053330:intron 40.0%
AACCCTATACCTCTAACCTC+TGG + chr1.3:24576025-24576044 MS.gene053330:intron 45.0%
ACACATAATGTGTGGAGAGG+TGG - chr1.3:24576571-24576590 None:intergenic 45.0%
ATCACGGACATTATGTGCAG+GGG + chr1.3:24576522-24576541 MS.gene053330:intron 45.0%
CACACACATAATGTGTGGAG+AGG - chr1.3:24576574-24576593 None:intergenic 45.0%
CCACCGTATACAACTAAGAG+AGG - chr1.3:24576762-24576781 None:intergenic 45.0%
CCTCTCTTAGTTGTATACGG+TGG + chr1.3:24576759-24576778 MS.gene053330:intron 45.0%
CTATCACGGACATTATGTGC+AGG + chr1.3:24576520-24576539 MS.gene053330:intron 45.0%
CTTCATTGTCATTGCTCCTC+AGG + chr1.3:24575482-24575501 MS.gene053330:CDS 45.0%
GCGAATGTGAGAAACCTTCT+TGG + chr1.3:24577178-24577197 MS.gene053330:CDS 45.0%
GGAACATAGGTGAGAATTGG+TGG - chr1.3:24577039-24577058 None:intergenic 45.0%
GGGAAATCTCCACCTTCAAT+AGG - chr1.3:24575384-24575403 None:intergenic 45.0%
GTGCACAAGGAGGAAACAAA+GGG - chr1.3:24577128-24577147 None:intergenic 45.0%
TCCTCATGATTGACACCCTT+AGG - chr1.3:24577150-24577169 None:intergenic 45.0%
TCTTAGTTGTATACGGTGGC+TGG + chr1.3:24576763-24576782 MS.gene053330:intron 45.0%
TTTCCTCCTTGTGCACCTAA+GGG + chr1.3:24577132-24577151 MS.gene053330:CDS 45.0%
! AGCCAGAGGTTAGAGGTATA+GGG - chr1.3:24576030-24576049 None:intergenic 45.0%
!! ACCTAAGGGTGTCAATCATG+AGG + chr1.3:24577146-24577165 MS.gene053330:CDS 45.0%
!! TAGCCAGTTGGTAGCTATCA+CGG + chr1.3:24576506-24576525 MS.gene053330:intron 45.0%
GGTGCACAAGGAGGAAACAA+AGG - chr1.3:24577129-24577148 None:intergenic 50.0%
GTCCCGTAATTGTAGCCAGT+TGG + chr1.3:24576494-24576513 MS.gene053330:intron 50.0%
GTTTCCTCCTTGTGCACCTA+AGG + chr1.3:24577131-24577150 MS.gene053330:CDS 50.0%
TGGTTTGAGCCAGAGGTTAG+AGG - chr1.3:24576037-24576056 None:intergenic 50.0%
TGTCCGTGATAGCTACCAAC+TGG - chr1.3:24576512-24576531 None:intergenic 50.0%
TTGACACCCTTAGGTGCACA+AGG - chr1.3:24577141-24577160 None:intergenic 50.0%
! AGAATCTGAGGTTCGAACCC+CGG - chr1.3:24576548-24576567 None:intergenic 50.0%
! GAGCCAGAGGTTAGAGGTAT+AGG - chr1.3:24576031-24576050 None:intergenic 50.0%
ACACCCTTAGGTGCACAAGG+AGG - chr1.3:24577138-24577157 None:intergenic 55.0%
GTGGAGAGGTGGAGAATCTG+AGG - chr1.3:24576560-24576579 None:intergenic 55.0%
! GCACTTGGTGGTCATAGTCG+CGG + chr1.3:24576895-24576914 MS.gene053330:CDS 55.0%
!! GCTCAACTGGTTTGAGCCAG+AGG - chr1.3:24576044-24576063 None:intergenic 55.0%
CGGACATTATGTGCAGGGGC+CGG + chr1.3:24576526-24576545 MS.gene053330:intron 60.0%
GACATTATGTGCAGGGGCCG+GGG + chr1.3:24576528-24576547 MS.gene053330:intron 60.0%
GGACATTATGTGCAGGGGCC+GGG + chr1.3:24576527-24576546 MS.gene053330:intron 60.0%
! CTTGGTGGTCATAGTCGCGG+CGG + chr1.3:24576898-24576917 MS.gene053330:CDS 60.0%
! GGGGGGTTTGGTAGCTCAAC+TGG - chr1.3:24576057-24576076 None:intergenic 60.0%
! TTGGTGGTCATAGTCGCGGC+GGG + chr1.3:24576899-24576918 MS.gene053330:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 24575176 24577446 24575176 ID=MS.gene053330
chr1.3 mRNA 24575176 24577446 24575176 ID=MS.gene053330.t1;Parent=MS.gene053330
chr1.3 exon 24575176 24575266 24575176 ID=MS.gene053330.t1.exon1;Parent=MS.gene053330.t1
chr1.3 CDS 24575176 24575266 24575176 ID=cds.MS.gene053330.t1;Parent=MS.gene053330.t1
chr1.3 exon 24575349 24575503 24575349 ID=MS.gene053330.t1.exon2;Parent=MS.gene053330.t1
chr1.3 CDS 24575349 24575503 24575349 ID=cds.MS.gene053330.t1;Parent=MS.gene053330.t1
chr1.3 exon 24576769 24577446 24576769 ID=MS.gene053330.t1.exon3;Parent=MS.gene053330.t1
chr1.3 CDS 24576769 24577446 24576769 ID=cds.MS.gene053330.t1;Parent=MS.gene053330.t1
Gene Sequence

>MS.gene053330

ATGTGTTCTTCTGTTAGTAATGTTTTTGAAACTGGTAACTATACCACTAAGCTACTAAAGGTTGATTCTTGTTCACGTACACAACAATATGGTACAATTTTTATTAACTCTTCTATTATATGATATCCTATATAGTTCATGTGTGCTAAAGTTTTCTATATGTTTATGATCAGTTCCACCACCAAAATCTCTCTTGATTGCAACTCCTATTGAAGGTGGAGATTTCCCACTTCTACTTTTTCTACATGGCTATCTTCTTTTGAACTCATTTTATTCTCAGCTTATTGAGCATGTTGCTTCTCATGGCTTCATTGTCATTGCTCCTCAGGTTAGTTCCTATTTGACATTTTAATATGTAAGTTATATTTTATCTTGTTTGCAAGAAGCACTTCTAGGGAAAAATCACTTGTGTAAAGACTATTAGACATAGACATGAATCGATGACTAGAAGCAAGAATCACCAATTTCACATAATCATTAAAAACATTATTAGGAGAATATAATGGAAAGTAAAAGAAAATCATGATAGTATGTTTGACAAATGTTATGTTAATTGTCATGTTAGTTTTTTTTTTCCTCCTTGCACAGTGTAGAAAATTGTAGAATCATAGGGATGAAGATCATAAATGTAAGCAAGATAGCGAGCATATGTGTATTCATGAGAAGAATACTCATAAAAATTCATAGTTGAATGAATAGATTGAATAAAAGATACTGAATGAGTACATACTAGTCCTTATTTATAAGACTTAATGGACTAATCAATTGTGTAACTAACTTCCAACTCCACTAACTATTAACTAATCCTAATTAACCAACAAAATCCTAAGAATCTTAACACATGGCTTGAACCCTATACCTCTAACCTCTGGCTCAAACCAGTTGAGCTACCAAACCCCCCAAATAAACATTTTATTGTTGTTAGAAAATTTGAGTTGGATGTCTCATATTATAACATAAGAAAATTGGATTCTAAACTCAATCTTTATCCAACATCTTCAAATTTCAATTTGTTGACCATAGACATTGCACCATTTTTTCACTACAACGAATTTTAGCCCCTTATGATTTTATAAGAAATTTCAGTGCTAGGACTATGAGAGTATAGGTCAATCAAACACATGGGTGAGACATTTTCTATATCCATATTTCATTTCAATTCTTGTATCAATCTGATCCACTTAAAAAACTCACAATTTATTCACAATTATCTTTACAATTATTAATATTATACAAATTTAAAACACTTTAAATACACAAAATAAGGTAGATTATATCTTAGAAAACATGTCTAATGGATTAGAATTTCACGTAACGTGTCCCGTAATTGTAGCCAGTTGGTAGCTATCACGGACATTATGTGCAGGGGCCGGGGTTCGAACCTCAGATTCTCCACCTCTCCACACATTATGTGTGTGAATCTAGCCAATAGGCTACCTGACAAAAAACAAAAAAGAAATAAAGAATTTCATGTAATGTTGACATTTAAATACTGCTCATAAATTATACTGTAATTAGTAATTGCAACCAAATTGCAACCAATTTTTTCCCAACAGTTCTATTTTGGTGAAATAATCATGTTTCCTCTCTTAGTTGTATACGGTGGCTGGACCTGATATAACTGAAGAGATTTACTCTGTAGCTGCAATAACAAATTGGCTATCTAAAGGACTTAGCAAGATTCTTCCACCAAACATAAAACCAAATTTTGACAAGTTAGCACTTGGTGGTCATAGTCGCGGCGGGAAAACATCATTTGCTATTGCTCTAAGAAAATTAAACATCACAACTGATCTAAAATTTTCAGCCATAATAGGAGTTGATCCAGTTGATGGAATGGATAAAGGAAAGCAAACATCACCACCAATTCTCACCTATGTTCCTCATTCATTTGATTACGATATGGCAACATTGGTTATTGGTTCTGGTTTAGGTGATGTGAAAAAGAACCCTTTGTTTCCTCCTTGTGCACCTAAGGGTGTCAATCATGAGGATTTTTTTAGCGAATGTGAGAAACCTTCTTGGTATTTTGTGGCTAAGGATTATGGTCATGTTGATATGTTGGATGATGATACTAAAGGAGTTAGAGGGAAAGTTAGTTATTGTTTATGTAAGAATGGTGAATCAAGGAAACCTATGAGGATATTTGTTGGAGGAGTTATGGTTGCATTCTTGAAAGCTTATTTGCATGGTGATAATGTGGACTTATTAGCTATAAGAGACAAGAGTGTGAGTGTTCCTCTTGAGATGAAATTTGATTATTTTGTATAA

Protein sequence

>MS.gene053330.t1

MCSSVSNVFETGNYTTKLLKVDSCSRTQQYVPPPKSLLIATPIEGGDFPLLLFLHGYLLLNSFYSQLIEHVASHGFIVIAPQLYTVAGPDITEEIYSVAAITNWLSKGLSKILPPNIKPNFDKLALGGHSRGGKTSFAIALRKLNITTDLKFSAIIGVDPVDGMDKGKQTSPPILTYVPHSFDYDMATLVIGSGLGDVKKNPLFPPCAPKGVNHEDFFSECEKPSWYFVAKDYGHVDMLDDDTKGVRGKVSYCLCKNGESRKPMRIFVGGVMVAFLKAYLHGDNVDLLAIRDKSVSVPLEMKFDYFV