AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050426


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050426.t1 MTR_7g110310 100.000 394 0 0 1 394 1 394 0.0 818
MS.gene050426.t1 MTR_2g046710 93.573 389 25 0 3 391 4 392 0.0 739
MS.gene050426.t1 MTR_4g123810 92.821 390 28 0 2 391 3 392 0.0 738
MS.gene050426.t1 MTR_7g102120 88.860 386 43 0 3 388 2 387 0.0 704
MS.gene050426.t1 MTR_1g063060 86.788 386 51 0 3 388 2 387 0.0 694
MS.gene050426.t1 MTR_1g063060 86.788 386 51 0 3 388 20 405 0.0 694
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050426.t1 AT4G01850 92.347 392 30 0 3 394 2 393 0.0 745
MS.gene050426.t1 AT4G01850 92.347 392 30 0 3 394 2 393 0.0 745
MS.gene050426.t1 AT1G02500 92.857 392 28 0 3 394 2 393 0.0 744
MS.gene050426.t1 AT1G02500 92.857 392 28 0 3 394 2 393 0.0 744
MS.gene050426.t1 AT3G17390 92.347 392 30 0 3 394 2 393 0.0 732
MS.gene050426.t1 AT2G36880 88.860 386 43 0 3 388 2 387 0.0 701
MS.gene050426.t1 AT2G36880 88.860 386 43 0 3 388 2 387 0.0 701

Find 140 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTAAGGTCCAAGTTTA+TGG 0.138584 7.1:+4478020 None:intergenic
TTTCTTAAGACAGCTGCTTA+TGG 0.284960 7.1:-4477982 MS.gene050426:CDS
TGGGTCAAAGGCATCAATTC+AGG 0.288293 7.1:+4478663 None:intergenic
AAGATTATCATTGATACTTA+TGG 0.306222 7.1:-4478309 MS.gene050426:CDS
CCTTCTGGCCGCTTTGTCAT+TGG 0.311751 7.1:-4478366 MS.gene050426:CDS
ATCTGGTCGCACAGCTTGTC+GGG 0.316863 7.1:+4479020 None:intergenic
CATTGATACTTATGGTGGTT+GGG 0.317021 7.1:-4478301 MS.gene050426:CDS
CTCATAGTCTACGTTGGCCT+TGG 0.319902 7.1:+4478890 None:intergenic
ACTAACATGGTCATGGTCTT+TGG 0.325220 7.1:-4478924 MS.gene050426:CDS
ATCTTCCACCTTAACCCTTC+TGG 0.339546 7.1:-4478381 MS.gene050426:CDS
ATCAATGATAATCTTTCTTC+CGG 0.346977 7.1:+4478317 None:intergenic
TCACAGGCAACCTTGCTGTC+AGG 0.350803 7.1:+4478960 None:intergenic
CCAGATTGCTGCTGATCTTA+AGG 0.357337 7.1:-4478454 MS.gene050426:CDS
CCACTTCTGTCAACCTTGGT+TGG 0.360492 7.1:+4478243 None:intergenic
TGCTGTTGCCACCCCTCTTA+AGG 0.364997 7.1:+4478007 None:intergenic
CACTTCTGTCAACCTTGGTT+GGG 0.374639 7.1:+4478244 None:intergenic
AAGTACTTCTCGGGAATAAC+AGG 0.381664 7.1:+4478417 None:intergenic
CATGTCCTTGCAACCAAACT+TGG 0.385708 7.1:-4478642 MS.gene050426:CDS
GATATTGCTCAAGGTGTTCA+TGG 0.389561 7.1:-4478762 MS.gene050426:CDS
TCAGTCTTTGTTGACAGTTA+TGG 0.391107 7.1:-4478117 MS.gene050426:CDS
AAGTTTATGGTGATCATTCC+AGG 0.391766 7.1:+4478033 None:intergenic
CCATAAACTTGGACCTTAAG+AGG 0.398540 7.1:-4478020 MS.gene050426:CDS
CACGGTGGAGGTGCCTTCTC+AGG 0.402997 7.1:-4478273 MS.gene050426:CDS
GGAGGTTGGTGCTGGTGACC+AGG 0.407279 7.1:-4478718 MS.gene050426:CDS
CTTCTCATCCAAGTACTTCT+CGG 0.410892 7.1:+4478407 None:intergenic
GATCTGGTCGCACAGCTTGT+CGG 0.416769 7.1:+4479019 None:intergenic
AGGACAGTGTGGACACGAAC+TGG 0.417997 7.1:+4478513 None:intergenic
TTTGTTGACAGTTATGGAAC+TGG 0.419936 7.1:-4478111 MS.gene050426:CDS
GGTTGGGGTGCTCACGGTGG+AGG 0.425538 7.1:-4478285 MS.gene050426:CDS
GGTGACCAGGGTCACATGTT+TGG 0.425995 7.1:-4478705 MS.gene050426:CDS
ACCAACCTCCTCCGGTCGCT+TGG 0.426190 7.1:+4478731 None:intergenic
GGTTGGGTCCTTTCCTGAGA+AGG 0.428342 7.1:+4478260 None:intergenic
CAAAGCGGCCAGAAGGGTTA+AGG 0.434307 7.1:+4478373 None:intergenic
TGTTATTCCCGAGAAGTACT+TGG 0.435100 7.1:-4478415 MS.gene050426:CDS
CAAGTTTGGTTGCAAGGACA+TGG 0.438358 7.1:+4478643 None:intergenic
TCATTGATACTTATGGTGGT+TGG 0.441161 7.1:-4478302 MS.gene050426:CDS
TGAACACCTTGAGCAATATC+AGG 0.445358 7.1:+4478765 None:intergenic
ACAACTTCCCATGTGAAGTC+AGG 0.445873 7.1:+4477940 None:intergenic
GAGAATTTCGACTTCAGACC+TGG 0.446842 7.1:-4478051 MS.gene050426:CDS
CCTTAAGATCAGCAGCAATC+TGG 0.458047 7.1:+4478454 None:intergenic
TCTGGCCGCTTTGTCATTGG+TGG 0.458127 7.1:-4478363 MS.gene050426:CDS
GACCAAGACCTTGCATTTGT+CGG 0.464752 7.1:+4478806 None:intergenic
GTAACTTGTGTCTTGCCGTC+AGG 0.465566 7.1:+4478570 None:intergenic
GGTAAGACGAGAACCAAGTT+TGG 0.467187 7.1:+4478629 None:intergenic
CGACCGGAGGAGGTTGGTGC+TGG 0.472165 7.1:-4478726 MS.gene050426:CDS
ACAAAGACTGACAAAGGTTC+AGG 0.472926 7.1:+4478129 None:intergenic
CACAGGCAACCTTGCTGTCA+GGG 0.473889 7.1:+4478961 None:intergenic
TGCCGACAAATGCAAGGTCT+TGG 0.476488 7.1:-4478808 MS.gene050426:CDS
GAGGTTGGTGCTGGTGACCA+GGG 0.476524 7.1:-4478717 MS.gene050426:CDS
CGAGCACTGCATCAGAGATC+TGG 0.482726 7.1:+4479003 None:intergenic
ATTTGAAGAATCTCCCTGTC+AGG 0.484553 7.1:+4478081 None:intergenic
CTGCTTATGGACACTTTGGA+AGG 0.487231 7.1:-4477969 MS.gene050426:CDS
AATCTTTCTTCCGGTGAGAC+CGG 0.488645 7.1:+4478326 None:intergenic
CTTACCGAGGTTAGGAAGAA+TGG 0.494148 7.1:-4478612 MS.gene050426:CDS
CGTGACACATGCCGCACCAT+TGG 0.494516 7.1:-4478858 MS.gene050426:CDS
ACAGCTGCTTATGGACACTT+TGG 0.494709 7.1:-4477973 MS.gene050426:CDS
TGGAATGATCACCATAAACT+TGG 0.495635 7.1:-4478031 MS.gene050426:CDS
GGATTCATCTCTGATGATGT+TGG 0.496804 7.1:-4478837 MS.gene050426:CDS
TTCTCATCCAAGTACTTCTC+GGG 0.498601 7.1:+4478408 None:intergenic
TTAAGAGGGGTGGCAACAGC+AGG 0.499577 7.1:-4478005 MS.gene050426:CDS
TGATTCAGATGTAAATAGAA+AGG 0.500218 7.1:+4479058 None:intergenic
TCACCAGCACCAACCTCCTC+CGG 0.500381 7.1:+4478723 None:intergenic
GGGTCAAAGGCATCAATTCA+GGG 0.504436 7.1:+4478664 None:intergenic
GTTCTCGTCTTACCGAGGTT+AGG 0.505425 7.1:-4478620 MS.gene050426:CDS
GGAAGAATGGTACCTGCGCT+TGG 0.516977 7.1:-4478599 MS.gene050426:CDS
TATGGTGGTTGGGGTGCTCA+CGG 0.517736 7.1:-4478291 MS.gene050426:CDS
ATTGATACTTATGGTGGTTG+GGG 0.520128 7.1:-4478300 MS.gene050426:CDS
GCTCGACGCTTGTCTTGAGC+AGG 0.520666 7.1:-4478985 MS.gene050426:CDS
GGTGAGACCGGCATCACCAT+GGG 0.521562 7.1:+4478338 None:intergenic
GAAGTGGTGCCTATGTTGTA+AGG 0.524030 7.1:-4478227 MS.gene050426:CDS
AGTCTTGGTGCATGTCTCAC+AGG 0.525417 7.1:+4478944 None:intergenic
TGAGGCTTCTCCCACTTGAG+TGG 0.529340 7.1:+4477913 None:intergenic
CATGGTGATGCCGGTCTCAC+CGG 0.530989 7.1:-4478336 MS.gene050426:CDS
CTTCACCAAGCGACCGGAGG+AGG 0.532058 7.1:-4478736 MS.gene050426:CDS
GTTCAAGTTTCATACGCCAT+TGG 0.533659 7.1:-4478156 MS.gene050426:CDS
ACCGTTGGCCACGATACTCT+TGG 0.534046 7.1:+4478197 None:intergenic
CAACACAATTCTTAAGCTTG+AGG 0.534059 7.1:+4477895 None:intergenic
GGTGGTCCCCATGGTGATGC+CGG 0.534409 7.1:-4478345 MS.gene050426:CDS
GGGATGATCCTGACTTCACA+TGG 0.535224 7.1:-4477948 MS.gene050426:CDS
TGGTGCCTATGTTGTAAGGC+AGG 0.539064 7.1:-4478223 MS.gene050426:CDS
GACCATGACCATGTTAGTCT+TGG 0.539549 7.1:+4478929 None:intergenic
CCAATGACAAAGCGGCCAGA+AGG 0.541172 7.1:+4478366 None:intergenic
ACCAAGCGACCGGAGGAGGT+TGG 0.554338 7.1:-4478732 MS.gene050426:CDS
GTTGCAAGGACATGGGTCAA+AGG 0.556162 7.1:+4478651 None:intergenic
TGGACACTTCACCAAGCGAC+CGG 0.560904 7.1:-4478742 MS.gene050426:CDS
GGCACCACTTCTGTCAACCT+TGG 0.561156 7.1:+4478239 None:intergenic
CATAAACTTGGACCTTAAGA+GGG 0.561791 7.1:-4478019 MS.gene050426:CDS
GAACTGGAAAGATTCCTGAC+AGG 0.562498 7.1:-4478095 MS.gene050426:CDS
CTACAATGAGAACGGTGCTA+TGG 0.563792 7.1:-4478538 MS.gene050426:CDS
TTTGTCATTGGTGGTCCCCA+TGG 0.564647 7.1:-4478354 MS.gene050426:CDS
CGGTGAGACCGGCATCACCA+TGG 0.572738 7.1:+4478337 None:intergenic
GGCCGCCTGCCTTACAACAT+AGG 0.573580 7.1:+4478218 None:intergenic
CGTCATGTTGAGTAGAAATG+AGG 0.574772 7.1:+4478493 None:intergenic
GGAGATTCTTCAAATTGTGA+AGG 0.577415 7.1:-4478073 MS.gene050426:CDS
ATTATCATTGATACTTATGG+TGG 0.577853 7.1:-4478306 MS.gene050426:CDS
CAATGACAAAGCGGCCAGAA+GGG 0.582473 7.1:+4478367 None:intergenic
GTCAGGTCTCAACCAAGCGC+AGG 0.588779 7.1:+4478587 None:intergenic
GAGAACCAAGTTTGGTTGCA+AGG 0.599192 7.1:+4478637 None:intergenic
AACTTGGACCTTAAGAGGGG+TGG 0.600140 7.1:-4478015 MS.gene050426:CDS
CAGAGTCCTGATATTGCTCA+AGG 0.600493 7.1:-4478771 MS.gene050426:CDS
TGCTTATGGACACTTTGGAA+GGG 0.601939 7.1:-4477968 MS.gene050426:CDS
GCCAAGAGTATCGTGGCCAA+CGG 0.604104 7.1:-4478198 MS.gene050426:CDS
AAGTTGTGAAACCACTCAAG+TGG 0.610837 7.1:-4477924 MS.gene050426:CDS
CCAACCAAGGTTGACAGAAG+TGG 0.610892 7.1:-4478243 MS.gene050426:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.616557 7.1:-4478268 MS.gene050426:CDS
AAGTTTGGTTGCAAGGACAT+GGG 0.617157 7.1:+4478644 None:intergenic
TGCCTATGTTGTAAGGCAGG+CGG 0.619125 7.1:-4478220 MS.gene050426:CDS
GCATCTGCGAGCAAGACCGT+TGG 0.622592 7.1:+4478182 None:intergenic
TGAGCAGGACCCTGACAGCA+AGG 0.623817 7.1:-4478970 MS.gene050426:CDS
AGCGGCCAGAAGGGTTAAGG+TGG 0.629636 7.1:+4478376 None:intergenic
CTGTCAACAAAGACTGACAA+AGG 0.630556 7.1:+4478123 None:intergenic
TCTGGTCGCACAGCTTGTCG+GGG 0.635896 7.1:+4479021 None:intergenic
GTTCTCATTGTAGTACTCGA+TGG 0.637222 7.1:+4478548 None:intergenic
CAAAGGTTCAGGCACACCAA+TGG 0.637977 7.1:+4478140 None:intergenic
CACCAAGACTAACATGGTCA+TGG 0.639561 7.1:-4478931 MS.gene050426:CDS
TCTTGATGCCGACAAATGCA+AGG 0.639773 7.1:-4478814 MS.gene050426:CDS
AACTGGAAAGATTCCTGACA+GGG 0.640690 7.1:-4478094 MS.gene050426:CDS
ATCATCAGAGATGAATCCAA+TGG 0.640935 7.1:+4478842 None:intergenic
GGTGGTTGGGGTGCTCACGG+TGG 0.644744 7.1:-4478288 MS.gene050426:CDS
AGTTGTGAAACCACTCAAGT+GGG 0.645098 7.1:-4477923 MS.gene050426:CDS
ATCGAGTACTACAATGAGAA+CGG 0.645228 7.1:-4478546 MS.gene050426:CDS
TACATCTGAATCAGTGAACG+AGG 0.649849 7.1:-4479048 MS.gene050426:CDS
CTCAGGAAAGGACCCAACCA+AGG 0.650893 7.1:-4478256 MS.gene050426:CDS
ACTTGGTTCTCGTCTTACCG+AGG 0.654033 7.1:-4478625 MS.gene050426:CDS
CAGAGATGAATCCAATGGTG+CGG 0.655738 7.1:+4478847 None:intergenic
CATAACCAAACATGTGACCC+TGG 0.656715 7.1:+4478700 None:intergenic
GGTCAAAGGCATCAATTCAG+GGG 0.658957 7.1:+4478665 None:intergenic
TGCGCTTGGTTGAGACCTGA+CGG 0.663059 7.1:-4478585 MS.gene050426:CDS
GGTACCATTCTTCCTAACCT+CGG 0.672851 7.1:+4478608 None:intergenic
GATCTTCTCATAGTCTACGT+TGG 0.675200 7.1:+4478884 None:intergenic
ACACTTCACCAAGCGACCGG+AGG 0.687239 7.1:-4478739 MS.gene050426:CDS
GGGGACCACCAATGACAAAG+CGG 0.696729 7.1:+4478358 None:intergenic
GGATGATCCTGACTTCACAT+GGG 0.698633 7.1:-4477947 MS.gene050426:CDS
GCAGGCGGCCAAGAGTATCG+TGG 0.699100 7.1:-4478205 MS.gene050426:CDS
CTTTGGAGAAATAACAACCA+AGG 0.702532 7.1:-4478907 MS.gene050426:CDS
ATAAACTTGGACCTTAAGAG+GGG 0.707857 7.1:-4478018 MS.gene050426:CDS
GTGAGACCGGCATCACCATG+GGG 0.708643 7.1:+4478339 None:intergenic
ACATCTGAATCAGTGAACGA+GGG 0.713919 7.1:-4479047 MS.gene050426:CDS
GACATGCACCAAGACTAACA+TGG 0.727763 7.1:-4478937 MS.gene050426:CDS
GAGTAGAAATGAGGACAGTG+TGG 0.744359 7.1:+4478502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTATCATTGATACTTA+TGG - chr7.1:4478665-4478684 MS.gene050426:CDS 20.0%
! ATCAATGATAATCTTTCTTC+CGG + chr7.1:4478660-4478679 None:intergenic 25.0%
! ATTATCATTGATACTTATGG+TGG - chr7.1:4478668-4478687 MS.gene050426:CDS 25.0%
! TGATTCAGATGTAAATAGAA+AGG + chr7.1:4477919-4477938 None:intergenic 25.0%
AAGTTTATGGTGATCATTCC+AGG + chr7.1:4478944-4478963 None:intergenic 35.0%
ATAAACTTGGACCTTAAGAG+GGG - chr7.1:4478956-4478975 MS.gene050426:CDS 35.0%
ATCATCAGAGATGAATCCAA+TGG + chr7.1:4478135-4478154 None:intergenic 35.0%
ATCGAGTACTACAATGAGAA+CGG - chr7.1:4478428-4478447 MS.gene050426:CDS 35.0%
ATTGATACTTATGGTGGTTG+GGG - chr7.1:4478674-4478693 MS.gene050426:CDS 35.0%
CATAAACTTGGACCTTAAGA+GGG - chr7.1:4478955-4478974 MS.gene050426:CDS 35.0%
CATTGATACTTATGGTGGTT+GGG - chr7.1:4478673-4478692 MS.gene050426:CDS 35.0%
GGAGATTCTTCAAATTGTGA+AGG - chr7.1:4478901-4478920 MS.gene050426:CDS 35.0%
TCAGTCTTTGTTGACAGTTA+TGG - chr7.1:4478857-4478876 MS.gene050426:CDS 35.0%
TCATTGATACTTATGGTGGT+TGG - chr7.1:4478672-4478691 MS.gene050426:CDS 35.0%
TGGAATGATCACCATAAACT+TGG - chr7.1:4478943-4478962 MS.gene050426:CDS 35.0%
TTTCTTAAGACAGCTGCTTA+TGG - chr7.1:4478992-4479011 MS.gene050426:CDS 35.0%
TTTGTTGACAGTTATGGAAC+TGG - chr7.1:4478863-4478882 MS.gene050426:CDS 35.0%
! CTTTGGAGAAATAACAACCA+AGG - chr7.1:4478067-4478086 MS.gene050426:CDS 35.0%
AACTGGAAAGATTCCTGACA+GGG - chr7.1:4478880-4478899 MS.gene050426:CDS 40.0%
AAGTACTTCTCGGGAATAAC+AGG + chr7.1:4478560-4478579 None:intergenic 40.0%
AAGTTGTGAAACCACTCAAG+TGG - chr7.1:4479050-4479069 MS.gene050426:CDS 40.0%
AAGTTTGGTTGCAAGGACAT+GGG + chr7.1:4478333-4478352 None:intergenic 40.0%
ACAAAGACTGACAAAGGTTC+AGG + chr7.1:4478848-4478867 None:intergenic 40.0%
ACATCTGAATCAGTGAACGA+GGG - chr7.1:4477927-4477946 MS.gene050426:CDS 40.0%
ACTAACATGGTCATGGTCTT+TGG - chr7.1:4478050-4478069 MS.gene050426:CDS 40.0%
AGTTGTGAAACCACTCAAGT+GGG - chr7.1:4479051-4479070 MS.gene050426:CDS 40.0%
ATTTGAAGAATCTCCCTGTC+AGG + chr7.1:4478896-4478915 None:intergenic 40.0%
CCATAAACTTGGACCTTAAG+AGG - chr7.1:4478954-4478973 MS.gene050426:CDS 40.0%
CCTCTTAAGGTCCAAGTTTA+TGG + chr7.1:4478957-4478976 None:intergenic 40.0%
CGTCATGTTGAGTAGAAATG+AGG + chr7.1:4478484-4478503 None:intergenic 40.0%
CTGTCAACAAAGACTGACAA+AGG + chr7.1:4478854-4478873 None:intergenic 40.0%
CTTCTCATCCAAGTACTTCT+CGG + chr7.1:4478570-4478589 None:intergenic 40.0%
GATCTTCTCATAGTCTACGT+TGG + chr7.1:4478093-4478112 None:intergenic 40.0%
GTTCTCATTGTAGTACTCGA+TGG + chr7.1:4478429-4478448 None:intergenic 40.0%
TACATCTGAATCAGTGAACG+AGG - chr7.1:4477926-4477945 MS.gene050426:CDS 40.0%
TGAACACCTTGAGCAATATC+AGG + chr7.1:4478212-4478231 None:intergenic 40.0%
TTCTCATCCAAGTACTTCTC+GGG + chr7.1:4478569-4478588 None:intergenic 40.0%
! GATATTGCTCAAGGTGTTCA+TGG - chr7.1:4478212-4478231 MS.gene050426:CDS 40.0%
! GGATTCATCTCTGATGATGT+TGG - chr7.1:4478137-4478156 MS.gene050426:CDS 40.0%
! GTTCAAGTTTCATACGCCAT+TGG - chr7.1:4478818-4478837 MS.gene050426:CDS 40.0%
! TGCTTATGGACACTTTGGAA+GGG - chr7.1:4479006-4479025 MS.gene050426:CDS 40.0%
!! TGTTATTCCCGAGAAGTACT+TGG - chr7.1:4478559-4478578 MS.gene050426:CDS 40.0%
AATCTTTCTTCCGGTGAGAC+CGG + chr7.1:4478651-4478670 None:intergenic 45.0%
ACAACTTCCCATGTGAAGTC+AGG + chr7.1:4479037-4479056 None:intergenic 45.0%
ACAGCTGCTTATGGACACTT+TGG - chr7.1:4479001-4479020 MS.gene050426:CDS 45.0%
ATCTTCCACCTTAACCCTTC+TGG - chr7.1:4478593-4478612 MS.gene050426:CDS 45.0%
CAAGTTTGGTTGCAAGGACA+TGG + chr7.1:4478334-4478353 None:intergenic 45.0%
CACCAAGACTAACATGGTCA+TGG - chr7.1:4478043-4478062 MS.gene050426:CDS 45.0%
CACTTCTGTCAACCTTGGTT+GGG + chr7.1:4478733-4478752 None:intergenic 45.0%
CAGAGATGAATCCAATGGTG+CGG + chr7.1:4478130-4478149 None:intergenic 45.0%
CAGAGTCCTGATATTGCTCA+AGG - chr7.1:4478203-4478222 MS.gene050426:CDS 45.0%
CATAACCAAACATGTGACCC+TGG + chr7.1:4478277-4478296 None:intergenic 45.0%
CATGTCCTTGCAACCAAACT+TGG - chr7.1:4478332-4478351 MS.gene050426:CDS 45.0%
CCAGATTGCTGCTGATCTTA+AGG - chr7.1:4478520-4478539 MS.gene050426:CDS 45.0%
CCTTAAGATCAGCAGCAATC+TGG + chr7.1:4478523-4478542 None:intergenic 45.0%
CTGCTTATGGACACTTTGGA+AGG - chr7.1:4479005-4479024 MS.gene050426:CDS 45.0%
CTTACCGAGGTTAGGAAGAA+TGG - chr7.1:4478362-4478381 MS.gene050426:CDS 45.0%
GAACTGGAAAGATTCCTGAC+AGG - chr7.1:4478879-4478898 MS.gene050426:CDS 45.0%
GAAGTGGTGCCTATGTTGTA+AGG - chr7.1:4478747-4478766 MS.gene050426:CDS 45.0%
GACATGCACCAAGACTAACA+TGG - chr7.1:4478037-4478056 MS.gene050426:CDS 45.0%
GACCAAGACCTTGCATTTGT+CGG + chr7.1:4478171-4478190 None:intergenic 45.0%
GAGAACCAAGTTTGGTTGCA+AGG + chr7.1:4478340-4478359 None:intergenic 45.0%
GAGAATTTCGACTTCAGACC+TGG - chr7.1:4478923-4478942 MS.gene050426:CDS 45.0%
GAGTAGAAATGAGGACAGTG+TGG + chr7.1:4478475-4478494 None:intergenic 45.0%
GGATGATCCTGACTTCACAT+GGG - chr7.1:4479027-4479046 MS.gene050426:CDS 45.0%
GGTAAGACGAGAACCAAGTT+TGG + chr7.1:4478348-4478367 None:intergenic 45.0%
GGTACCATTCTTCCTAACCT+CGG + chr7.1:4478369-4478388 None:intergenic 45.0%
TCTTGATGCCGACAAATGCA+AGG - chr7.1:4478160-4478179 MS.gene050426:CDS 45.0%
! CTACAATGAGAACGGTGCTA+TGG - chr7.1:4478436-4478455 MS.gene050426:CDS 45.0%
! GACCATGACCATGTTAGTCT+TGG + chr7.1:4478048-4478067 None:intergenic 45.0%
!! GGGTCAAAGGCATCAATTCA+GGG + chr7.1:4478313-4478332 None:intergenic 45.0%
!! GGTCAAAGGCATCAATTCAG+GGG + chr7.1:4478312-4478331 None:intergenic 45.0%
!! TGGGTCAAAGGCATCAATTC+AGG + chr7.1:4478314-4478333 None:intergenic 45.0%
AACTTGGACCTTAAGAGGGG+TGG - chr7.1:4478959-4478978 MS.gene050426:CDS 50.0%
CAAAGGTTCAGGCACACCAA+TGG + chr7.1:4478837-4478856 None:intergenic 50.0%
CAATGACAAAGCGGCCAGAA+GGG + chr7.1:4478610-4478629 None:intergenic 50.0%
CCAACCAAGGTTGACAGAAG+TGG - chr7.1:4478731-4478750 MS.gene050426:CDS 50.0%
CCACTTCTGTCAACCTTGGT+TGG + chr7.1:4478734-4478753 None:intergenic 50.0%
GGGATGATCCTGACTTCACA+TGG - chr7.1:4479026-4479045 MS.gene050426:CDS 50.0%
GTTCTCGTCTTACCGAGGTT+AGG - chr7.1:4478354-4478373 MS.gene050426:CDS 50.0%
GTTGCAAGGACATGGGTCAA+AGG + chr7.1:4478326-4478345 None:intergenic 50.0%
TGCCGACAAATGCAAGGTCT+TGG - chr7.1:4478166-4478185 MS.gene050426:CDS 50.0%
TGCCTATGTTGTAAGGCAGG+CGG - chr7.1:4478754-4478773 MS.gene050426:CDS 50.0%
TGGTGCCTATGTTGTAAGGC+AGG - chr7.1:4478751-4478770 MS.gene050426:CDS 50.0%
! ACTTGGTTCTCGTCTTACCG+AGG - chr7.1:4478349-4478368 MS.gene050426:CDS 50.0%
! AGTCTTGGTGCATGTCTCAC+AGG + chr7.1:4478033-4478052 None:intergenic 50.0%
! CTCATAGTCTACGTTGGCCT+TGG + chr7.1:4478087-4478106 None:intergenic 50.0%
! GTAACTTGTGTCTTGCCGTC+AGG + chr7.1:4478407-4478426 None:intergenic 50.0%
! TTTGTCATTGGTGGTCCCCA+TGG - chr7.1:4478620-4478639 MS.gene050426:CDS 50.0%
ACCGTTGGCCACGATACTCT+TGG + chr7.1:4478780-4478799 None:intergenic 55.0%
AGGACAGTGTGGACACGAAC+TGG + chr7.1:4478464-4478483 None:intergenic 55.0%
ATCTGGTCGCACAGCTTGTC+GGG + chr7.1:4477957-4477976 None:intergenic 55.0%
CAAAGCGGCCAGAAGGGTTA+AGG + chr7.1:4478604-4478623 None:intergenic 55.0%
CCAATGACAAAGCGGCCAGA+AGG + chr7.1:4478611-4478630 None:intergenic 55.0%
CTCAGGAAAGGACCCAACCA+AGG - chr7.1:4478718-4478737 MS.gene050426:CDS 55.0%
GATCTGGTCGCACAGCTTGT+CGG + chr7.1:4477958-4477977 None:intergenic 55.0%
GGAAGAATGGTACCTGCGCT+TGG - chr7.1:4478375-4478394 MS.gene050426:CDS 55.0%
GGCACCACTTCTGTCAACCT+TGG + chr7.1:4478738-4478757 None:intergenic 55.0%
GGGGACCACCAATGACAAAG+CGG + chr7.1:4478619-4478638 None:intergenic 55.0%
GGTGACCAGGGTCACATGTT+TGG - chr7.1:4478269-4478288 MS.gene050426:CDS 55.0%
GGTTGGGTCCTTTCCTGAGA+AGG + chr7.1:4478717-4478736 None:intergenic 55.0%
TGAGGCTTCTCCCACTTGAG+TGG + chr7.1:4479064-4479083 None:intergenic 55.0%
TGCGCTTGGTTGAGACCTGA+CGG - chr7.1:4478389-4478408 MS.gene050426:CDS 55.0%
TGCTGTTGCCACCCCTCTTA+AGG + chr7.1:4478970-4478989 None:intergenic 55.0%
TGGACACTTCACCAAGCGAC+CGG - chr7.1:4478232-4478251 MS.gene050426:CDS 55.0%
TTAAGAGGGGTGGCAACAGC+AGG - chr7.1:4478969-4478988 MS.gene050426:CDS 55.0%
! CACAGGCAACCTTGCTGTCA+GGG + chr7.1:4478016-4478035 None:intergenic 55.0%
! CCTTCTGGCCGCTTTGTCAT+TGG - chr7.1:4478608-4478627 MS.gene050426:CDS 55.0%
! CGAGCACTGCATCAGAGATC+TGG + chr7.1:4477974-4477993 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+CGG - chr7.1:4478683-4478702 MS.gene050426:CDS 55.0%
! TCACAGGCAACCTTGCTGTC+AGG + chr7.1:4478017-4478036 None:intergenic 55.0%
! TCTGGCCGCTTTGTCATTGG+TGG - chr7.1:4478611-4478630 MS.gene050426:CDS 55.0%
!! GCCAAGAGTATCGTGGCCAA+CGG - chr7.1:4478776-4478795 MS.gene050426:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr7.1:4478706-4478725 MS.gene050426:CDS 55.0%
ACACTTCACCAAGCGACCGG+AGG - chr7.1:4478235-4478254 MS.gene050426:CDS 60.0%
AGCGGCCAGAAGGGTTAAGG+TGG + chr7.1:4478601-4478620 None:intergenic 60.0%
CGTGACACATGCCGCACCAT+TGG - chr7.1:4478116-4478135 MS.gene050426:CDS 60.0%
GCATCTGCGAGCAAGACCGT+TGG + chr7.1:4478795-4478814 None:intergenic 60.0%
GCTCGACGCTTGTCTTGAGC+AGG - chr7.1:4477989-4478008 MS.gene050426:CDS 60.0%
GGCCGCCTGCCTTACAACAT+AGG + chr7.1:4478759-4478778 None:intergenic 60.0%
GGTGAGACCGGCATCACCAT+GGG + chr7.1:4478639-4478658 None:intergenic 60.0%
GTCAGGTCTCAACCAAGCGC+AGG + chr7.1:4478390-4478409 None:intergenic 60.0%
GTGAGACCGGCATCACCATG+GGG + chr7.1:4478638-4478657 None:intergenic 60.0%
TCACCAGCACCAACCTCCTC+CGG + chr7.1:4478254-4478273 None:intergenic 60.0%
TCTGGTCGCACAGCTTGTCG+GGG + chr7.1:4477956-4477975 None:intergenic 60.0%
TGAGCAGGACCCTGACAGCA+AGG - chr7.1:4478004-4478023 MS.gene050426:CDS 60.0%
! CATGGTGATGCCGGTCTCAC+CGG - chr7.1:4478638-4478657 MS.gene050426:CDS 60.0%
!! GAGGTTGGTGCTGGTGACCA+GGG - chr7.1:4478257-4478276 MS.gene050426:CDS 60.0%
ACCAACCTCCTCCGGTCGCT+TGG + chr7.1:4478246-4478265 None:intergenic 65.0%
ACCAAGCGACCGGAGGAGGT+TGG - chr7.1:4478242-4478261 MS.gene050426:CDS 65.0%
CGGTGAGACCGGCATCACCA+TGG + chr7.1:4478640-4478659 None:intergenic 65.0%
CTTCACCAAGCGACCGGAGG+AGG - chr7.1:4478238-4478257 MS.gene050426:CDS 65.0%
! GGTGGTCCCCATGGTGATGC+CGG - chr7.1:4478629-4478648 MS.gene050426:CDS 65.0%
!! CACGGTGGAGGTGCCTTCTC+AGG - chr7.1:4478701-4478720 MS.gene050426:CDS 65.0%
!! GCAGGCGGCCAAGAGTATCG+TGG - chr7.1:4478769-4478788 MS.gene050426:CDS 65.0%
!! GGAGGTTGGTGCTGGTGACC+AGG - chr7.1:4478256-4478275 MS.gene050426:CDS 65.0%
! GGTGGTTGGGGTGCTCACGG+TGG - chr7.1:4478686-4478705 MS.gene050426:CDS 70.0%
! GGTTGGGGTGCTCACGGTGG+AGG - chr7.1:4478689-4478708 MS.gene050426:CDS 70.0%
!! CGACCGGAGGAGGTTGGTGC+TGG - chr7.1:4478248-4478267 MS.gene050426:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4477906 4479090 4477906 ID=MS.gene050426
chr7.1 mRNA 4477906 4479090 4477906 ID=MS.gene050426.t1;Parent=MS.gene050426
chr7.1 exon 4477906 4479090 4477906 ID=MS.gene050426.t1.exon1;Parent=MS.gene050426.t1
chr7.1 CDS 4477906 4479090 4477906 ID=cds.MS.gene050426.t1;Parent=MS.gene050426.t1
Gene Sequence

>MS.gene050426

ATGGCGGAAACCTTTCTATTTACATCTGAATCAGTGAACGAGGGTCACCCCGACAAGCTGTGCGACCAGATCTCTGATGCAGTGCTCGACGCTTGTCTTGAGCAGGACCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACTAACATGGTCATGGTCTTTGGAGAAATAACAACCAAGGCCAACGTAGACTATGAGAAGATCGTTCGTGACACATGCCGCACCATTGGATTCATCTCTGATGATGTTGGTCTTGATGCCGACAAATGCAAGGTCTTGGTCAACATTGAGCAGCAGAGTCCTGATATTGCTCAAGGTGTTCATGGACACTTCACCAAGCGACCGGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGTTATGCTACTGACGAAACCCCTGAATTGATGCCTTTGACCCATGTCCTTGCAACCAAACTTGGTTCTCGTCTTACCGAGGTTAGGAAGAATGGTACCTGCGCTTGGTTGAGACCTGACGGCAAGACACAAGTTACCATCGAGTACTACAATGAGAACGGTGCTATGGTTCCAGTTCGTGTCCACACTGTCCTCATTTCTACTCAACATGACGAGACTGTCAGTAATGACCAGATTGCTGCTGATCTTAAGGAACATGTTATCAAGCCTGTTATTCCCGAGAAGTACTTGGATGAGAAGACAATCTTCCACCTTAACCCTTCTGGCCGCTTTGTCATTGGTGGTCCCCATGGTGATGCCGGTCTCACCGGAAGAAAGATTATCATTGATACTTATGGTGGTTGGGGTGCTCACGGTGGAGGTGCCTTCTCAGGAAAGGACCCAACCAAGGTTGACAGAAGTGGTGCCTATGTTGTAAGGCAGGCGGCCAAGAGTATCGTGGCCAACGGTCTTGCTCGCAGATGCATTGTTCAAGTTTCATACGCCATTGGTGTGCCTGAACCTTTGTCAGTCTTTGTTGACAGTTATGGAACTGGAAAGATTCCTGACAGGGAGATTCTTCAAATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATAAACTTGGACCTTAAGAGGGGTGGCAACAGCAGGTTTCTTAAGACAGCTGCTTATGGACACTTTGGAAGGGATGATCCTGACTTCACATGGGAAGTTGTGAAACCACTCAAGTGGGAGAAGCCTCAAGCTTAA

Protein sequence

>MS.gene050426.t1

MAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRTIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPELMPLTHVLATKLGSRLTEVRKNGTCAWLRPDGKTQVTIEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA