Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24231.t1 | KEH40192.1 | 96.2 | 419 | 16 | 0 | 1 | 419 | 52 | 470 | 1.90E-235 | 824.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24231.t1 | P81898 | 67.6 | 377 | 117 | 3 | 28 | 404 | 174 | 545 | 7.1e-146 | 518.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24231.t1 | A0A072VEE9 | 96.2 | 419 | 16 | 0 | 1 | 419 | 52 | 470 | 1.4e-235 | 824.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050630 | MS.gene24231 | 0.809977 | 1.45E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene24231 | 0.836662 | 8.21E-57 | -1.69E-46 |
| MS.gene052732 | MS.gene24231 | 0.835513 | 1.61E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene24231 | 0.827893 | 1.22E-54 | -1.69E-46 |
| MS.gene053174 | MS.gene24231 | 0.8172 | 3.73E-52 | -1.69E-46 |
| MS.gene054550 | MS.gene24231 | 0.841003 | 6.18E-58 | -1.69E-46 |
| MS.gene054584 | MS.gene24231 | 0.828218 | 1.02E-54 | -1.69E-46 |
| MS.gene055890 | MS.gene24231 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene24231 | 0.834959 | 2.22E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene24231 | 0.80381 | 2.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24231.t1 | MTR_1g023030 | 96.181 | 419 | 16 | 0 | 1 | 419 | 52 | 470 | 0.0 | 827 |
| MS.gene24231.t1 | MTR_1g023030 | 95.455 | 396 | 18 | 0 | 24 | 419 | 212 | 607 | 0.0 | 778 |
| MS.gene24231.t1 | MTR_1g023035 | 88.776 | 392 | 44 | 0 | 28 | 419 | 216 | 607 | 0.0 | 718 |
| MS.gene24231.t1 | MTR_5g083160 | 39.130 | 391 | 210 | 6 | 21 | 400 | 227 | 600 | 3.27e-84 | 269 |
| MS.gene24231.t1 | MTR_3g029720 | 54.386 | 57 | 25 | 1 | 62 | 118 | 10 | 65 | 2.38e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24231.t1 | AT3G14920 | 57.250 | 400 | 161 | 5 | 25 | 418 | 213 | 608 | 1.70e-157 | 458 |
| MS.gene24231.t1 | AT5G05480 | 39.031 | 392 | 223 | 8 | 10 | 394 | 196 | 578 | 2.51e-80 | 259 |
Find 89 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTACATCTTTGGTTAGA+TGG | 0.236844 | 1.2:-1849010 | MS.gene24231:CDS |
| TAGATGCAAATTTACATCTT+TGG | 0.254882 | 1.2:-1849018 | MS.gene24231:CDS |
| ACTGCAGAACCAAGACAAAA+TGG | 0.289612 | 1.2:-1849790 | MS.gene24231:CDS |
| GATGGAAAGAAACATTTGTT+TGG | 0.297951 | 1.2:-1849076 | MS.gene24231:CDS |
| TCTCTAAAGGGTCCATTTCC+AGG | 0.305071 | 1.2:+1849265 | None:intergenic |
| CAAGACAAAATGGGATTGTT+TGG | 0.311105 | 1.2:-1849780 | MS.gene24231:CDS |
| CCAGTATAAATAACAGTAAA+AGG | 0.312494 | 1.2:+1849199 | None:intergenic |
| TTCATGAGAATGATGAGTTT+TGG | 0.320138 | 1.2:-1849342 | MS.gene24231:CDS |
| TCTCTAGTATCTGACTTTAC+TGG | 0.322552 | 1.2:-1848929 | MS.gene24231:CDS |
| TAGTGCAAAGAAGTCCATTT+TGG | 0.322647 | 1.2:-1848885 | MS.gene24231:CDS |
| AAAAGAAGTCACACTCGTTT+TGG | 0.324629 | 1.2:-1848362 | MS.gene24231:CDS |
| CTCTTGTGGAGACCGATTAC+TGG | 0.325651 | 1.2:-1849163 | MS.gene24231:CDS |
| ATCAAAATCTTGAACAAAAC+TGG | 0.329209 | 1.2:+1848823 | None:intergenic |
| TTCCATTCAACGATGGGTTC+TGG | 0.333116 | 1.2:-1849456 | MS.gene24231:CDS |
| AACCCATCCAGTAGCCAAAA+TGG | 0.338352 | 1.2:+1848871 | None:intergenic |
| CTTTGCTACTCTAGGAGAAT+TGG | 0.348550 | 1.2:-1848434 | MS.gene24231:CDS |
| TACAACAGTTCAATGGTAAT+CGG | 0.350504 | 1.2:-1848800 | MS.gene24231:CDS |
| CAATGGTAATCGGGAAGAAC+GGG | 0.354448 | 1.2:-1848790 | MS.gene24231:CDS |
| AAGTCTAAGAGGGAGGATTC+CGG | 0.377410 | 1.2:-1848578 | MS.gene24231:CDS |
| ATCTTTCAACAACACTGTTC+GGG | 0.379828 | 1.2:-1848741 | MS.gene24231:CDS |
| ATGGAAAGAAACATTTGTTT+GGG | 0.381787 | 1.2:-1849075 | MS.gene24231:CDS |
| GACTCACACTAGAGCATAAT+GGG | 0.388174 | 1.2:+1848320 | None:intergenic |
| GAATGGAAGATTCCTTGAAA+TGG | 0.389497 | 1.2:+1849471 | None:intergenic |
| ACTGATAATACCCCTGGAAA+TGG | 0.392819 | 1.2:-1849277 | MS.gene24231:CDS |
| AGTCTAAGAGGGAGGATTCC+GGG | 0.401143 | 1.2:-1848577 | MS.gene24231:CDS |
| TTCAACTGATGTGGGTTTGA+AGG | 0.401901 | 1.2:-1849419 | MS.gene24231:CDS |
| TATCTTTCAACAACACTGTT+CGG | 0.403156 | 1.2:-1848742 | MS.gene24231:CDS |
| TTTGCAACAAGATATTCATT+TGG | 0.403286 | 1.2:+1849307 | None:intergenic |
| GGATGGGTTAGCTCCTCCTT+TGG | 0.410230 | 1.2:-1848857 | MS.gene24231:CDS |
| ACCCTTGATGAGAAAGTTGT+TGG | 0.412463 | 1.2:-1849232 | MS.gene24231:CDS |
| AATGGAAGATTCCTTGAAAT+GGG | 0.412954 | 1.2:+1849472 | None:intergenic |
| TGACAAATGCATTGAATGTT+TGG | 0.414168 | 1.2:-1849045 | MS.gene24231:CDS |
| AGAAAGTTGTTGGTTCGGTT+TGG | 0.420865 | 1.2:-1849222 | MS.gene24231:CDS |
| ATTTGATCTTGCCCATTTCA+AGG | 0.426665 | 1.2:-1849483 | MS.gene24231:CDS |
| GAATCACGTTGACAAACCTT+TGG | 0.434903 | 1.2:-1848957 | MS.gene24231:CDS |
| TTCATCTGAGTCCAAGTAAA+GGG | 0.436516 | 1.2:+1848664 | None:intergenic |
| TGTGTGTCGTCGACCAAGTC+TGG | 0.440978 | 1.2:+1848698 | None:intergenic |
| TGATGAGAAAGTTGTTGGTT+CGG | 0.445847 | 1.2:-1849227 | MS.gene24231:CDS |
| TCTGACTTTACTGGTTTAAA+CGG | 0.450785 | 1.2:-1848920 | MS.gene24231:CDS |
| GTTATTTCAATATCATAAGA+TGG | 0.450864 | 1.2:+1849121 | None:intergenic |
| TAGAAAGCTATTTGAAATCC+CGG | 0.456802 | 1.2:+1848559 | None:intergenic |
| GGTAACTACAACCTCTCTAA+AGG | 0.457878 | 1.2:+1849252 | None:intergenic |
| GGACTCACACTAGAGCATAA+TGG | 0.461020 | 1.2:+1848319 | None:intergenic |
| AAGGAGCCGATCCCAGTAAT+CGG | 0.470101 | 1.2:+1849151 | None:intergenic |
| TTACTGTTATTTATACTGGA+GGG | 0.470861 | 1.2:-1849195 | MS.gene24231:CDS |
| GCAACAAGATATTCATTTGG+AGG | 0.471426 | 1.2:+1849310 | None:intergenic |
| GTAACTACAACCTCTCTAAA+GGG | 0.476716 | 1.2:+1849253 | None:intergenic |
| AATATTACTGATAATACCCC+TGG | 0.477323 | 1.2:-1849283 | MS.gene24231:CDS |
| TGTGGGTTTGAAGGAATTTG+TGG | 0.477582 | 1.2:-1849410 | MS.gene24231:CDS |
| AATTCAAAATTCAACTGATG+TGG | 0.484511 | 1.2:-1849428 | MS.gene24231:CDS |
| ATTCAAAATTCAACTGATGT+GGG | 0.485399 | 1.2:-1849427 | MS.gene24231:CDS |
| GGAAAGAGCAGTAGAACAGA+AGG | 0.495994 | 1.2:-1848989 | MS.gene24231:CDS |
| AACCAGAACCCATCGTTGAA+TGG | 0.500047 | 1.2:+1849454 | None:intergenic |
| CTGCAGAACCAAGACAAAAT+GGG | 0.502842 | 1.2:-1849789 | MS.gene24231:CDS |
| TACTGTTATTTATACTGGAG+GGG | 0.502938 | 1.2:-1849194 | MS.gene24231:CDS |
| ACAACAGTTCAATGGTAATC+GGG | 0.504417 | 1.2:-1848799 | MS.gene24231:CDS |
| AATTTGGTTGTAAGTGGAGT+GGG | 0.506275 | 1.2:-1848494 | MS.gene24231:CDS |
| AACCAACAACTTTCTCATCA+AGG | 0.513482 | 1.2:+1849230 | None:intergenic |
| CTCTAAAGGGTCCATTTCCA+GGG | 0.517376 | 1.2:+1849266 | None:intergenic |
| TCAATGGTAATCGGGAAGAA+CGG | 0.523216 | 1.2:-1848791 | MS.gene24231:CDS |
| GTTCATCTGAGTCCAAGTAA+AGG | 0.527494 | 1.2:+1848663 | None:intergenic |
| TTTACTGTTATTTATACTGG+AGG | 0.529623 | 1.2:-1849196 | MS.gene24231:CDS |
| TCTTGTGGAGACCGATTACT+GGG | 0.535316 | 1.2:-1849162 | MS.gene24231:CDS |
| GGAATCTTCCATTCAACGAT+GGG | 0.539031 | 1.2:-1849462 | MS.gene24231:CDS |
| TTATTTCAATATCATAAGAT+GGG | 0.558227 | 1.2:+1849122 | None:intergenic |
| TGGAGACCGATTACTGGGAT+CGG | 0.563934 | 1.2:-1849157 | MS.gene24231:CDS |
| TCCATCGTCCTATCCAGACT+TGG | 0.568206 | 1.2:-1848711 | MS.gene24231:CDS |
| ATTTGGTTGTAAGTGGAGTG+GGG | 0.569265 | 1.2:-1848493 | MS.gene24231:CDS |
| CGGTGAGAATAAGTCTAAGA+GGG | 0.572091 | 1.2:-1848588 | MS.gene24231:CDS |
| GATACTAGAGATTCAACCAA+AGG | 0.572969 | 1.2:+1848941 | None:intergenic |
| TCGGTGAGAATAAGTCTAAG+AGG | 0.575583 | 1.2:-1848589 | MS.gene24231:CDS |
| ACCAACAACTTTCTCATCAA+GGG | 0.578875 | 1.2:+1849231 | None:intergenic |
| TTTGGTTGTAAGTGGAGTGG+GGG | 0.582874 | 1.2:-1848492 | MS.gene24231:CDS |
| GCAATGAACTTTGCTACTCT+AGG | 0.583245 | 1.2:-1848442 | MS.gene24231:CDS |
| AGGAATCTTCCATTCAACGA+TGG | 0.589358 | 1.2:-1849463 | MS.gene24231:CDS |
| GAATTTGGTTGTAAGTGGAG+TGG | 0.594445 | 1.2:-1848495 | MS.gene24231:CDS |
| ATCATAAGATGGGAGATCAA+AGG | 0.606229 | 1.2:+1849132 | None:intergenic |
| GAGGGGTTAATCCTCTCTTG+TGG | 0.626252 | 1.2:-1849177 | MS.gene24231:CDS |
| GCAGGACGGCCAGGGTACAA+TGG | 0.628679 | 1.2:-1848528 | MS.gene24231:CDS |
| GGTTGTGATATTACCAAAGG+AGG | 0.631202 | 1.2:+1848844 | None:intergenic |
| ACTGGTTGTGATATTACCAA+AGG | 0.631749 | 1.2:+1848841 | None:intergenic |
| AATGGTAATCGGGAAGAACG+GGG | 0.638379 | 1.2:-1848789 | MS.gene24231:CDS |
| GTCGTCGACCAAGTCTGGAT+AGG | 0.644148 | 1.2:+1848703 | None:intergenic |
| GTAATCGGTCTCCACAAGAG+AGG | 0.655301 | 1.2:+1849166 | None:intergenic |
| TGGAAATGGACCCTTTAGAG+AGG | 0.663228 | 1.2:-1849263 | MS.gene24231:CDS |
| ACCAAGTCTGGATAGGACGA+TGG | 0.671192 | 1.2:+1848710 | None:intergenic |
| ATGGTAATCGGGAAGAACGG+GGG | 0.680994 | 1.2:-1848788 | MS.gene24231:CDS |
| TGAGAATAAGTCTAAGAGGG+AGG | 0.683487 | 1.2:-1848585 | MS.gene24231:CDS |
| TCTAAAGGGTCCATTTCCAG+GGG | 0.691105 | 1.2:+1849267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTCAATATCATAAGAT+GGG | + | chr1.2:1849025-1849044 | None:intergenic | 15.0% |
| !!! | AAAAAACAAAAAGACTTTTA+TGG | - | chr1.2:1848558-1848577 | MS.gene24231:CDS | 15.0% |
| !! | AATGGTTGTTAAAAAGAATT+TGG | - | chr1.2:1849634-1849653 | MS.gene24231:intron | 20.0% |
| !!! | GTTATTTCAATATCATAAGA+TGG | + | chr1.2:1849026-1849045 | None:intergenic | 20.0% |
| ! | AAAAAGAATTTGGTTGTAAG+TGG | - | chr1.2:1849644-1849663 | MS.gene24231:intron | 25.0% |
| ! | AATTCAAAATTCAACTGATG+TGG | - | chr1.2:1848716-1848735 | MS.gene24231:CDS | 25.0% |
| ! | AATTTACATCTTTGGTTAGA+TGG | - | chr1.2:1849134-1849153 | MS.gene24231:CDS | 25.0% |
| ! | AGTTTGATTCTTTAGCATTT+AGG | - | chr1.2:1848616-1848635 | MS.gene24231:CDS | 25.0% |
| ! | ATCAAAATCTTGAACAAAAC+TGG | + | chr1.2:1849324-1849343 | None:intergenic | 25.0% |
| ! | ATGGAAAGAAACATTTGTTT+GGG | - | chr1.2:1849069-1849088 | MS.gene24231:CDS | 25.0% |
| ! | ATTCAAAATTCAACTGATGT+GGG | - | chr1.2:1848717-1848736 | MS.gene24231:CDS | 25.0% |
| ! | ATTGTCGATAAAACATATAC+TGG | - | chr1.2:1848471-1848490 | MS.gene24231:CDS | 25.0% |
| ! | CCAGTATAAATAACAGTAAA+AGG | + | chr1.2:1848948-1848967 | None:intergenic | 25.0% |
| ! | TAGATGCAAATTTACATCTT+TGG | - | chr1.2:1849126-1849145 | MS.gene24231:CDS | 25.0% |
| ! | TTTGCAACAAGATATTCATT+TGG | + | chr1.2:1848840-1848859 | None:intergenic | 25.0% |
| !! | TCGAATTTTACATTAGGATT+CGG | - | chr1.2:1849536-1849555 | MS.gene24231:intron | 25.0% |
| !! | TTACTGTTATTTATACTGGA+GGG | - | chr1.2:1848949-1848968 | MS.gene24231:CDS | 25.0% |
| !! | TTTACTGTTATTTATACTGG+AGG | - | chr1.2:1848948-1848967 | MS.gene24231:CDS | 25.0% |
| !!! | ATTGAAATAACCCCTTTTTT+GGG | - | chr1.2:1849035-1849054 | MS.gene24231:CDS | 25.0% |
| !!! | CCTTTTACTGTTATTTATAC+TGG | - | chr1.2:1848945-1848964 | MS.gene24231:CDS | 25.0% |
| !!! | GATATTGCTATTCACTTTTA+CGG | - | chr1.2:1848507-1848526 | MS.gene24231:CDS | 25.0% |
| !!! | GCTAAAGTTTGATTTTTTTG+AGG | + | chr1.2:1848435-1848454 | None:intergenic | 25.0% |
| !!! | TATTGAAATAACCCCTTTTT+TGG | - | chr1.2:1849034-1849053 | MS.gene24231:CDS | 25.0% |
| !!! | TTTTGATTACAACAGTTCAA+TGG | - | chr1.2:1849337-1849356 | MS.gene24231:CDS | 25.0% |
| AATATTACTGATAATACCCC+TGG | - | chr1.2:1848861-1848880 | MS.gene24231:CDS | 30.0% | |
| AATGGAAGATTCCTTGAAAT+GGG | + | chr1.2:1848675-1848694 | None:intergenic | 30.0% | |
| GATGGAAAGAAACATTTGTT+TGG | - | chr1.2:1849068-1849087 | MS.gene24231:CDS | 30.0% | |
| TACAACAGTTCAATGGTAAT+CGG | - | chr1.2:1849344-1849363 | MS.gene24231:CDS | 30.0% | |
| TATCTTTCAACAACACTGTT+CGG | - | chr1.2:1849402-1849421 | MS.gene24231:CDS | 30.0% | |
| TATGAGTGTTCTGTCTAAAA+GGG | + | chr1.2:1848587-1848606 | None:intergenic | 30.0% | |
| TGACAAATGCATTGAATGTT+TGG | - | chr1.2:1849099-1849118 | MS.gene24231:CDS | 30.0% | |
| TTATGAGTGTTCTGTCTAAA+AGG | + | chr1.2:1848588-1848607 | None:intergenic | 30.0% | |
| ! | CAGAAATTTTTCCCTTTACT+TGG | - | chr1.2:1849469-1849488 | MS.gene24231:CDS | 30.0% |
| ! | TACTGTTATTTATACTGGAG+GGG | - | chr1.2:1848950-1848969 | MS.gene24231:CDS | 30.0% |
| ! | TAGAAAGCTATTTGAAATCC+CGG | + | chr1.2:1849588-1849607 | None:intergenic | 30.0% |
| ! | TAGCTTTCTAAAAAATGTGC+AGG | - | chr1.2:1849598-1849617 | MS.gene24231:intron | 30.0% |
| ! | TTCATGAGAATGATGAGTTT+TGG | - | chr1.2:1848802-1848821 | MS.gene24231:CDS | 30.0% |
| ! | TTTCTAAAAAATGTGCAGGA+CGG | - | chr1.2:1849602-1849621 | MS.gene24231:intron | 30.0% |
| !! | GCTGTTTCGAATTTTACATT+AGG | - | chr1.2:1849530-1849549 | MS.gene24231:intron | 30.0% |
| !! | TCTGACTTTACTGGTTTAAA+CGG | - | chr1.2:1849224-1849243 | MS.gene24231:CDS | 30.0% |
| !! | TTTTTGAGGATTCAACAACA+AGG | + | chr1.2:1848421-1848440 | None:intergenic | 30.0% |
| !!! | TTGAAATAACCCCTTTTTTG+GGG | - | chr1.2:1849036-1849055 | MS.gene24231:CDS | 30.0% |
| AACCAACAACTTTCTCATCA+AGG | + | chr1.2:1848917-1848936 | None:intergenic | 35.0% | |
| AATTTGGTTGTAAGTGGAGT+GGG | - | chr1.2:1849650-1849669 | MS.gene24231:intron | 35.0% | |
| ACAACAGTTCAATGGTAATC+GGG | - | chr1.2:1849345-1849364 | MS.gene24231:CDS | 35.0% | |
| ACCAACAACTTTCTCATCAA+GGG | + | chr1.2:1848916-1848935 | None:intergenic | 35.0% | |
| ACTGGTTGTGATATTACCAA+AGG | + | chr1.2:1849306-1849325 | None:intergenic | 35.0% | |
| ATCATAAGATGGGAGATCAA+AGG | + | chr1.2:1849015-1849034 | None:intergenic | 35.0% | |
| ATCTTTCAACAACACTGTTC+GGG | - | chr1.2:1849403-1849422 | MS.gene24231:CDS | 35.0% | |
| ATTTGATCTTGCCCATTTCA+AGG | - | chr1.2:1848661-1848680 | MS.gene24231:CDS | 35.0% | |
| CAAGACAAAATGGGATTGTT+TGG | - | chr1.2:1848364-1848383 | MS.gene24231:CDS | 35.0% | |
| CAATATTGTCCCCAAAAAAG+GGG | + | chr1.2:1849048-1849067 | None:intergenic | 35.0% | |
| CCAATATTGTCCCCAAAAAA+GGG | + | chr1.2:1849049-1849068 | None:intergenic | 35.0% | |
| GAATGGAAGATTCCTTGAAA+TGG | + | chr1.2:1848676-1848695 | None:intergenic | 35.0% | |
| GATACTAGAGATTCAACCAA+AGG | + | chr1.2:1849206-1849225 | None:intergenic | 35.0% | |
| GCAACAAGATATTCATTTGG+AGG | + | chr1.2:1848837-1848856 | None:intergenic | 35.0% | |
| GTAACTACAACCTCTCTAAA+GGG | + | chr1.2:1848894-1848913 | None:intergenic | 35.0% | |
| GTGTTGAAAAAGACATCACA+AGG | - | chr1.2:1848388-1848407 | MS.gene24231:CDS | 35.0% | |
| TCCAATATTGTCCCCAAAAA+AGG | + | chr1.2:1849050-1849069 | None:intergenic | 35.0% | |
| TCTCTAGTATCTGACTTTAC+TGG | - | chr1.2:1849215-1849234 | MS.gene24231:CDS | 35.0% | |
| TTCATCTGAGTCCAAGTAAA+GGG | + | chr1.2:1849483-1849502 | None:intergenic | 35.0% | |
| ! | AAAAGAAGTCACACTCGTTT+TGG | - | chr1.2:1849782-1849801 | MS.gene24231:CDS | 35.0% |
| ! | ACAGCTCTATAAGCATTTTG+AGG | + | chr1.2:1848762-1848781 | None:intergenic | 35.0% |
| ! | CAAACAATCCCATTTTGTCT+TGG | + | chr1.2:1848366-1848385 | None:intergenic | 35.0% |
| ! | TAGTGCAAAGAAGTCCATTT+TGG | - | chr1.2:1849259-1849278 | MS.gene24231:CDS | 35.0% |
| ! | TGATGAGAAAGTTGTTGGTT+CGG | - | chr1.2:1848917-1848936 | MS.gene24231:CDS | 35.0% |
| ! | TTTTAACAACCATTGTACCC+TGG | + | chr1.2:1849628-1849647 | None:intergenic | 35.0% |
| !! | TTTTTGGGGACAATATTGGA+TGG | - | chr1.2:1849050-1849069 | MS.gene24231:CDS | 35.0% |
| ACCCTTGATGAGAAAGTTGT+TGG | - | chr1.2:1848912-1848931 | MS.gene24231:CDS | 40.0% | |
| ACTGATAATACCCCTGGAAA+TGG | - | chr1.2:1848867-1848886 | MS.gene24231:CDS | 40.0% | |
| ACTGCAGAACCAAGACAAAA+TGG | - | chr1.2:1848354-1848373 | MS.gene24231:CDS | 40.0% | |
| AGGAATCTTCCATTCAACGA+TGG | - | chr1.2:1848681-1848700 | MS.gene24231:CDS | 40.0% | |
| ATTTGGTTGTAAGTGGAGTG+GGG | - | chr1.2:1849651-1849670 | MS.gene24231:intron | 40.0% | |
| CGGTGAGAATAAGTCTAAGA+GGG | - | chr1.2:1849556-1849575 | MS.gene24231:intron | 40.0% | |
| CTGCAGAACCAAGACAAAAT+GGG | - | chr1.2:1848355-1848374 | MS.gene24231:CDS | 40.0% | |
| GAATCACGTTGACAAACCTT+TGG | - | chr1.2:1849187-1849206 | MS.gene24231:CDS | 40.0% | |
| GAATTTGGTTGTAAGTGGAG+TGG | - | chr1.2:1849649-1849668 | MS.gene24231:intron | 40.0% | |
| GCAATGAACTTTGCTACTCT+AGG | - | chr1.2:1849702-1849721 | MS.gene24231:intron | 40.0% | |
| GGAATCTTCCATTCAACGAT+GGG | - | chr1.2:1848682-1848701 | MS.gene24231:CDS | 40.0% | |
| GGTAACTACAACCTCTCTAA+AGG | + | chr1.2:1848895-1848914 | None:intergenic | 40.0% | |
| GGTTGTGATATTACCAAAGG+AGG | + | chr1.2:1849303-1849322 | None:intergenic | 40.0% | |
| GTTCATCTGAGTCCAAGTAA+AGG | + | chr1.2:1849484-1849503 | None:intergenic | 40.0% | |
| TCAATGGTAATCGGGAAGAA+CGG | - | chr1.2:1849353-1849372 | MS.gene24231:CDS | 40.0% | |
| TCGGTGAGAATAAGTCTAAG+AGG | - | chr1.2:1849555-1849574 | MS.gene24231:intron | 40.0% | |
| TGAGAATAAGTCTAAGAGGG+AGG | - | chr1.2:1849559-1849578 | MS.gene24231:intron | 40.0% | |
| TGTGGGTTTGAAGGAATTTG+TGG | - | chr1.2:1848734-1848753 | MS.gene24231:CDS | 40.0% | |
| TTCAACTGATGTGGGTTTGA+AGG | - | chr1.2:1848725-1848744 | MS.gene24231:CDS | 40.0% | |
| ! | CTTTGCTACTCTAGGAGAAT+TGG | - | chr1.2:1849710-1849729 | MS.gene24231:intron | 40.0% |
| !! | AGAAAGTTGTTGGTTCGGTT+TGG | - | chr1.2:1848922-1848941 | MS.gene24231:CDS | 40.0% |
| !! | TCACTTTTACGGTCACAAGT+GGG | - | chr1.2:1848518-1848537 | MS.gene24231:CDS | 40.0% |
| !! | TTCACTTTTACGGTCACAAG+TGG | - | chr1.2:1848517-1848536 | MS.gene24231:CDS | 40.0% |
| !!! | AAGAAGTCCATTTTGGCTAC+TGG | - | chr1.2:1849266-1849285 | MS.gene24231:CDS | 40.0% |
| !!! | CCCTTTTTTGGGGACAATAT+TGG | - | chr1.2:1849046-1849065 | MS.gene24231:CDS | 40.0% |
| AACCAGAACCCATCGTTGAA+TGG | + | chr1.2:1848693-1848712 | None:intergenic | 45.0% | |
| AACCCATCCAGTAGCCAAAA+TGG | + | chr1.2:1849276-1849295 | None:intergenic | 45.0% | |
| AAGTCTAAGAGGGAGGATTC+CGG | - | chr1.2:1849566-1849585 | MS.gene24231:intron | 45.0% | |
| AATGGTAATCGGGAAGAACG+GGG | - | chr1.2:1849355-1849374 | MS.gene24231:CDS | 45.0% | |
| CAATGGTAATCGGGAAGAAC+GGG | - | chr1.2:1849354-1849373 | MS.gene24231:CDS | 45.0% | |
| GGAAAGAGCAGTAGAACAGA+AGG | - | chr1.2:1849155-1849174 | MS.gene24231:CDS | 45.0% | |
| TCTAAAGGGTCCATTTCCAG+GGG | + | chr1.2:1848880-1848899 | None:intergenic | 45.0% | |
| TCTTGTGGAGACCGATTACT+GGG | - | chr1.2:1848982-1849001 | MS.gene24231:CDS | 45.0% | |
| TTTGGTTGTAAGTGGAGTGG+GGG | - | chr1.2:1849652-1849671 | MS.gene24231:intron | 45.0% | |
| ! | CTCTAAAGGGTCCATTTCCA+GGG | + | chr1.2:1848881-1848900 | None:intergenic | 45.0% |
| ! | TCTCTAAAGGGTCCATTTCC+AGG | + | chr1.2:1848882-1848901 | None:intergenic | 45.0% |
| ! | TGGAAATGGACCCTTTAGAG+AGG | - | chr1.2:1848881-1848900 | MS.gene24231:CDS | 45.0% |
| ! | TTCCATTCAACGATGGGTTC+TGG | - | chr1.2:1848688-1848707 | MS.gene24231:CDS | 45.0% |
| !!! | AGTCCATTTTGGCTACTGGA+TGG | - | chr1.2:1849270-1849289 | MS.gene24231:CDS | 45.0% |
| !!! | GTCCATTTTGGCTACTGGAT+GGG | - | chr1.2:1849271-1849290 | MS.gene24231:CDS | 45.0% |
| AAAAAATGTGCAGGACGGCC+AGG | - | chr1.2:1849607-1849626 | MS.gene24231:intron | 50.0% | |
| AAAAATGTGCAGGACGGCCA+GGG | - | chr1.2:1849608-1849627 | MS.gene24231:intron | 50.0% | |
| AAGGAGCCGATCCCAGTAAT+CGG | + | chr1.2:1848996-1849015 | None:intergenic | 50.0% | |
| ACCAAGTCTGGATAGGACGA+TGG | + | chr1.2:1849437-1849456 | None:intergenic | 50.0% | |
| AGTCTAAGAGGGAGGATTCC+GGG | - | chr1.2:1849567-1849586 | MS.gene24231:intron | 50.0% | |
| ATGGTAATCGGGAAGAACGG+GGG | - | chr1.2:1849356-1849375 | MS.gene24231:CDS | 50.0% | |
| CTCTTGTGGAGACCGATTAC+TGG | - | chr1.2:1848981-1849000 | MS.gene24231:CDS | 50.0% | |
| GAGGGGTTAATCCTCTCTTG+TGG | - | chr1.2:1848967-1848986 | MS.gene24231:CDS | 50.0% | |
| GTAATCGGTCTCCACAAGAG+AGG | + | chr1.2:1848981-1849000 | None:intergenic | 50.0% | |
| TCCATCGTCCTATCCAGACT+TGG | - | chr1.2:1849433-1849452 | MS.gene24231:CDS | 50.0% | |
| TGGAGACCGATTACTGGGAT+CGG | - | chr1.2:1848987-1849006 | MS.gene24231:CDS | 50.0% | |
| GTCGTCGACCAAGTCTGGAT+AGG | + | chr1.2:1849444-1849463 | None:intergenic | 55.0% | |
| TGTGTGTCGTCGACCAAGTC+TGG | + | chr1.2:1849449-1849468 | None:intergenic | 55.0% | |
| !! | GGATGGGTTAGCTCCTCCTT+TGG | - | chr1.2:1849287-1849306 | MS.gene24231:CDS | 55.0% |
| GCAGGACGGCCAGGGTACAA+TGG | - | chr1.2:1849616-1849635 | MS.gene24231:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 1848328 | 1849838 | 1848328 | ID=MS.gene24231 |
| chr1.2 | mRNA | 1848328 | 1849838 | 1848328 | ID=MS.gene24231.t1;Parent=MS.gene24231 |
| chr1.2 | exon | 1849757 | 1849838 | 1849757 | ID=MS.gene24231.t1.exon1;Parent=MS.gene24231.t1 |
| chr1.2 | CDS | 1849757 | 1849838 | 1849757 | ID=cds.MS.gene24231.t1;Parent=MS.gene24231.t1 |
| chr1.2 | exon | 1848328 | 1849505 | 1848328 | ID=MS.gene24231.t1.exon2;Parent=MS.gene24231.t1 |
| chr1.2 | CDS | 1848328 | 1849505 | 1848328 | ID=cds.MS.gene24231.t1;Parent=MS.gene24231.t1 |
| Gene Sequence |
| Protein sequence |
