Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24371.t1 | ADV15621.1 | 95.9 | 290 | 8 | 2 | 1 | 286 | 1 | 290 | 7.70E-135 | 490 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24371.t1 | O48722 | 63.8 | 240 | 75 | 2 | 59 | 286 | 60 | 299 | 1.6e-80 | 300.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24371.t1 | E7ECB3 | 95.9 | 290 | 8 | 2 | 1 | 286 | 1 | 290 | 5.5e-135 | 490.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050165 | MS.gene24371 | 0.802206 | 6.26E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene24371 | 0.812182 | 4.82E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene24371 | 0.834136 | 3.57E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene24371 | 0.801795 | 7.61E-49 | -1.69E-46 |
| MS.gene050876 | MS.gene24371 | 0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene056549 | MS.gene24371 | 0.816851 | 4.47E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24371.t1 | MTR_1g019970 | 93.448 | 290 | 14 | 2 | 1 | 286 | 1 | 289 | 0.0 | 512 |
| MS.gene24371.t1 | MTR_8g019320 | 49.321 | 221 | 107 | 2 | 65 | 285 | 65 | 280 | 2.74e-74 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24371.t1 | AT2G26550 | 62.917 | 240 | 77 | 1 | 59 | 286 | 60 | 299 | 7.73e-104 | 305 |
| MS.gene24371.t1 | AT2G26550 | 59.216 | 255 | 77 | 2 | 59 | 286 | 60 | 314 | 1.07e-99 | 295 |
| MS.gene24371.t1 | AT2G26550 | 51.525 | 295 | 76 | 3 | 59 | 286 | 60 | 354 | 9.72e-91 | 273 |
| MS.gene24371.t1 | AT2G26550 | 60.476 | 210 | 71 | 1 | 59 | 256 | 60 | 269 | 1.05e-82 | 250 |
| MS.gene24371.t1 | AT2G26670 | 50.901 | 222 | 104 | 2 | 65 | 285 | 64 | 281 | 1.35e-80 | 245 |
| MS.gene24371.t1 | AT1G69720 | 43.571 | 280 | 148 | 2 | 13 | 285 | 8 | 284 | 4.66e-78 | 239 |
| MS.gene24371.t1 | AT1G69720 | 43.571 | 280 | 148 | 2 | 13 | 285 | 8 | 284 | 4.66e-78 | 239 |
| MS.gene24371.t1 | AT1G58300 | 47.945 | 219 | 105 | 2 | 68 | 285 | 72 | 282 | 2.12e-70 | 219 |
| MS.gene24371.t1 | AT2G26670 | 42.601 | 223 | 77 | 2 | 63 | 285 | 62 | 233 | 5.79e-60 | 191 |
| MS.gene24371.t1 | AT1G69720 | 39.091 | 220 | 124 | 2 | 13 | 225 | 8 | 224 | 4.77e-48 | 160 |
Find 67 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAGTTCCTCTAAATATT+TGG | 0.110208 | 1.1:+3267017 | None:intergenic |
| GAGAATGATGATTCTTCTTC+TGG | 0.223274 | 1.1:+3268184 | None:intergenic |
| GAAAGGCTTTCTTCGATTCT+TGG | 0.256872 | 1.1:-3267925 | MS.gene24371:CDS |
| CCTCATCTCTTCGGTGATTC+CGG | 0.265544 | 1.1:+3268058 | None:intergenic |
| CGAAGAAAGCCTTTCATAGA+AGG | 0.348541 | 1.1:+3267933 | None:intergenic |
| ACTCCAGCTCCTTACCTTCC+AGG | 0.374412 | 1.1:+3265460 | None:intergenic |
| GAACAATCTGTCCCATAAAC+TGG | 0.386716 | 1.1:+3265217 | None:intergenic |
| GATGCATACTTGAGGAAAAC+TGG | 0.393679 | 1.1:-3267135 | MS.gene24371:CDS |
| TTTGTCGTTGTGGAGTTTCA+TGG | 0.408606 | 1.1:+3268028 | None:intergenic |
| GTGATTCCGGTGGTTTCACC+AGG | 0.410208 | 1.1:+3268071 | None:intergenic |
| TACATATGCCAAATATTTAG+AGG | 0.415258 | 1.1:-3267025 | MS.gene24371:CDS |
| ATAGAAGGATACCACGTGTC+AGG | 0.419281 | 1.1:+3267948 | None:intergenic |
| AAAATGGATATTGTAGAAAT+GGG | 0.422336 | 1.1:+3266969 | None:intergenic |
| TTCATCTTCTTATCCACCGT+TGG | 0.446531 | 1.1:-3268126 | MS.gene24371:CDS |
| CGAACGCATTGTTGATGATT+CGG | 0.450060 | 1.1:-3267874 | MS.gene24371:CDS |
| TTCTCATATAACTGCTGGCC+AGG | 0.466119 | 1.1:-3266947 | MS.gene24371:CDS |
| TTAGGTATCTGAAAAGCTCC+TGG | 0.483336 | 1.1:-3265478 | MS.gene24371:intron |
| ATTTGTGCAGCATTGGGGTC+GGG | 0.486709 | 1.1:-3265280 | MS.gene24371:intron |
| GGTGTTGAAGCGTGTTCGAT+TGG | 0.492898 | 1.1:+3268205 | None:intergenic |
| GAAGGATCTAGAATGGTTGA+AGG | 0.493575 | 1.1:-3267088 | MS.gene24371:CDS |
| TATGTAGTACCAGGTGAACT+TGG | 0.493729 | 1.1:+3267042 | None:intergenic |
| AGTACCAGGTGAACTTGGAT+TGG | 0.500411 | 1.1:+3267047 | None:intergenic |
| AGTGTTGATGATGGTGGGAA+TGG | 0.502339 | 1.1:+3268230 | None:intergenic |
| AGGAGCTGGAGTTCTGCAAA+TGG | 0.505314 | 1.1:-3265449 | MS.gene24371:CDS |
| AATTTGTGCAGCATTGGGGT+CGG | 0.511624 | 1.1:-3265281 | MS.gene24371:intron |
| CCATGGTTGTTGCAGTTGAG+TGG | 0.513441 | 1.1:+3268256 | None:intergenic |
| TGAAAAGCTCCTGGAAGGTA+AGG | 0.515112 | 1.1:-3265469 | MS.gene24371:CDS |
| GTACCAGGTGAACTTGGATT+GGG | 0.518612 | 1.1:+3267048 | None:intergenic |
| GGCAACGAACCTCATCTCTT+CGG | 0.520653 | 1.1:+3268049 | None:intergenic |
| CAAATGGGAAGGAGATGTAC+AGG | 0.523655 | 1.1:-3265433 | MS.gene24371:CDS |
| AGTGGTATTGTTGACGGTGT+TGG | 0.527238 | 1.1:+3268004 | None:intergenic |
| GTGTTGAAGCGTGTTCGATT+GGG | 0.527957 | 1.1:+3268206 | None:intergenic |
| AACAGAAGTGGTATTGTTGA+CGG | 0.534137 | 1.1:+3267998 | None:intergenic |
| CATCTCTTCGGTGATTCCGG+TGG | 0.534391 | 1.1:+3268061 | None:intergenic |
| ATACTTGAGGAAAACTGGAT+TGG | 0.541626 | 1.1:-3267130 | MS.gene24371:CDS |
| GGAGCTGGAGTTCTGCAAAT+GGG | 0.549742 | 1.1:-3265448 | MS.gene24371:CDS |
| CATGGTTGTTGCAGTTGAGT+GGG | 0.555894 | 1.1:+3268257 | None:intergenic |
| CTAGAATGGTTGAAGGAACA+AGG | 0.560120 | 1.1:-3267081 | MS.gene24371:CDS |
| ACTGGATTGGAAAGATCTGA+AGG | 0.563903 | 1.1:-3267117 | MS.gene24371:CDS |
| GCTCCTGGAAGGTAAGGAGC+TGG | 0.564683 | 1.1:-3265463 | MS.gene24371:CDS |
| TTGGGAAGTGTTGATGATGG+TGG | 0.574296 | 1.1:+3268224 | None:intergenic |
| GTCTTCTACTACAACAGAAG+TGG | 0.581954 | 1.1:+3267986 | None:intergenic |
| CTTTACCCTGGTGAAACCAC+CGG | 0.583875 | 1.1:-3268077 | MS.gene24371:CDS |
| TGGCCAGGTTATTACAAAGC+AGG | 0.585011 | 1.1:-3266932 | MS.gene24371:intron |
| ACGTGGTATCCTTCTATGAA+AGG | 0.586528 | 1.1:-3267942 | MS.gene24371:CDS |
| CGATTGGGAAGTGTTGATGA+TGG | 0.589944 | 1.1:+3268221 | None:intergenic |
| GTACCTGCTTTGTAATAACC+TGG | 0.590707 | 1.1:+3266929 | None:intergenic |
| CAAATATTTAGAGGAACTTG+CGG | 0.593836 | 1.1:-3267016 | MS.gene24371:CDS |
| GTATCTGAAAAGCTCCTGGA+AGG | 0.595672 | 1.1:-3265474 | MS.gene24371:CDS |
| TGGGAAGTGTTGATGATGGT+GGG | 0.598542 | 1.1:+3268225 | None:intergenic |
| TAGAAGGATACCACGTGTCA+GGG | 0.599723 | 1.1:+3267949 | None:intergenic |
| CGGTGGATAAGAAGATGAAG+AGG | 0.599791 | 1.1:+3268130 | None:intergenic |
| CGCTATCGAAAACTTTACCC+TGG | 0.601205 | 1.1:-3268089 | MS.gene24371:CDS |
| TATTTGGCATATGTAGTACC+AGG | 0.604625 | 1.1:+3267033 | None:intergenic |
| ATTCCCAATCCAAGTTCACC+TGG | 0.607725 | 1.1:-3267051 | MS.gene24371:CDS |
| CTGGAGTTCTGCAAATGGGA+AGG | 0.610060 | 1.1:-3265444 | MS.gene24371:CDS |
| TAGAAATGGGAAAGAAACAA+AGG | 0.614055 | 1.1:+3266982 | None:intergenic |
| GAATTGCAGATGCATACTTG+AGG | 0.618600 | 1.1:-3267143 | MS.gene24371:intron |
| CCACTCAACTGCAACAACCA+TGG | 0.631304 | 1.1:-3268256 | MS.gene24371:CDS |
| TTGTAATTTGTGCAGCATTG+GGG | 0.639959 | 1.1:-3265285 | MS.gene24371:intron |
| CCGGAATCACCGAAGAGATG+AGG | 0.642207 | 1.1:-3268058 | MS.gene24371:CDS |
| ACTTCTGTTGTAGTAGAAGA+CGG | 0.653998 | 1.1:-3267984 | MS.gene24371:CDS |
| GTTGTAGTAGAAGACGGTGA+AGG | 0.660451 | 1.1:-3267978 | MS.gene24371:CDS |
| GAAGCTTAACGTGCTTGCAG+AGG | 0.660843 | 1.1:-3265388 | MS.gene24371:intron |
| TGATTCCGGTGGTTTCACCA+GGG | 0.673875 | 1.1:+3268072 | None:intergenic |
| GATGGTGGGAATGGTAACCA+TGG | 0.718374 | 1.1:+3268239 | None:intergenic |
| AAGGACAAATCCCTGACACG+TGG | 0.718573 | 1.1:-3267959 | MS.gene24371:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTAAATTTTTTTAT+AGG | - | chr1.1:3267267-3267286 | MS.gene24371:intron | 0.0% |
| !! | ATCATTCAAAAAAAAAAAAT+TGG | - | chr1.1:3266790-3266809 | MS.gene24371:intron | 10.0% |
| !! | TGTTAAATTAAAAAAAATCA+AGG | + | chr1.1:3267746-3267765 | None:intergenic | 10.0% |
| !!! | ATCTTTATTTATTTTTAATC+TGG | + | chr1.1:3267392-3267411 | None:intergenic | 10.0% |
| !!! | TCTTTATTTATTTTTAATCT+GGG | + | chr1.1:3267391-3267410 | None:intergenic | 10.0% |
| !!! | TTTTGAATGATTTTTTTTTT+TGG | + | chr1.1:3266781-3266800 | None:intergenic | 10.0% |
| !! | AATAGTTGTTTATTCAAATA+GGG | - | chr1.1:3266241-3266260 | MS.gene24371:intron | 15.0% |
| !! | TAACAAAATCAAAATCAAAT+TGG | + | chr1.1:3265986-3266005 | None:intergenic | 15.0% |
| !! | TAATAGTTGTTTATTCAAAT+AGG | - | chr1.1:3266240-3266259 | MS.gene24371:intron | 15.0% |
| !! | TCTTTAATAAAGAATTCATT+AGG | + | chr1.1:3267908-3267927 | None:intergenic | 15.0% |
| !!! | ATAAATTTCACAAATGTTTT+AGG | + | chr1.1:3266267-3266286 | None:intergenic | 15.0% |
| !!! | ATTTGATAGAATTTTTTGTT+GGG | - | chr1.1:3267130-3267149 | MS.gene24371:CDS | 15.0% |
| !!! | TATTTGATAGAATTTTTTGT+TGG | - | chr1.1:3267129-3267148 | MS.gene24371:CDS | 15.0% |
| !!! | TTATACTTATTATTTTTGTG+TGG | - | chr1.1:3268167-3268186 | MS.gene24371:CDS | 15.0% |
| !!! | TTTAATTTAACACAGATATT+AGG | - | chr1.1:3267754-3267773 | MS.gene24371:intron | 15.0% |
| !! | AAAAAGTTAGTGATAAGATA+GGG | - | chr1.1:3267460-3267479 | MS.gene24371:intron | 20.0% |
| !! | AAAAATGGATATTGTAGAAA+TGG | + | chr1.1:3266510-3266529 | None:intergenic | 20.0% |
| !! | AAAATGGATATTGTAGAAAT+GGG | + | chr1.1:3266509-3266528 | None:intergenic | 20.0% |
| !! | AGCTAATTTAAACTTATATG+AGG | - | chr1.1:3266821-3266840 | MS.gene24371:intron | 20.0% |
| !! | ATAATGATAAAACACAAACA+CGG | + | chr1.1:3267240-3267259 | None:intergenic | 20.0% |
| !! | GATTTATTGTTTAACAATCA+AGG | - | chr1.1:3266843-3266862 | MS.gene24371:intron | 20.0% |
| !! | TAAAAAGTTAGTGATAAGAT+AGG | - | chr1.1:3267459-3267478 | MS.gene24371:intron | 20.0% |
| !!! | AATCAAATTGGTTTCATTTA+AGG | + | chr1.1:3265974-3265993 | None:intergenic | 20.0% |
| !!! | ACTTTGAATTCATTAATTTG+AGG | - | chr1.1:3265698-3265717 | MS.gene24371:intron | 20.0% |
| !!! | ATTTATTTTTAATCTGGGAA+TGG | + | chr1.1:3267386-3267405 | None:intergenic | 20.0% |
| !!! | TCGCAAAATAACAAATTTTA+TGG | - | chr1.1:3266108-3266127 | MS.gene24371:intron | 20.0% |
| !!! | TTGATTTGATTTAGTTATGA+TGG | - | chr1.1:3266289-3266308 | MS.gene24371:intron | 20.0% |
| !!! | TTTTTTATAGGTAAGTGAAA+CGG | - | chr1.1:3267279-3267298 | MS.gene24371:intron | 20.0% |
| !!! | TTTTTTTTTAATCCTGATGA+CGG | - | chr1.1:3266988-3267007 | MS.gene24371:CDS | 20.0% |
| ! | AAAAAAGTCATTCCAGTTTA+TGG | - | chr1.1:3268246-3268265 | MS.gene24371:CDS | 25.0% |
| ! | AAAAAGTCATTCCAGTTTAT+GGG | - | chr1.1:3268247-3268266 | MS.gene24371:CDS | 25.0% |
| ! | AAAGTTTCTTATAAGCATAC+AGG | - | chr1.1:3266643-3266662 | MS.gene24371:intron | 25.0% |
| ! | AAATGAATGAAGGAAATATG+TGG | - | chr1.1:3267203-3267222 | MS.gene24371:intron | 25.0% |
| ! | AAGTTTCTTATAAGCATACA+GGG | - | chr1.1:3266644-3266663 | MS.gene24371:intron | 25.0% |
| ! | ACAAAACACTTATAGGATAT+AGG | - | chr1.1:3266050-3266069 | MS.gene24371:intron | 25.0% |
| ! | ACATTGTCTTTCCAATATTT+AGG | - | chr1.1:3267849-3267868 | MS.gene24371:intron | 25.0% |
| ! | ACCTTATACTTTATATCCTT+GGG | - | chr1.1:3267322-3267341 | MS.gene24371:intron | 25.0% |
| ! | AGGATATAAAGTATAAGGTA+AGG | + | chr1.1:3267321-3267340 | None:intergenic | 25.0% |
| ! | ATGCTTAAAGAAATTCTTGA+TGG | + | chr1.1:3267956-3267975 | None:intergenic | 25.0% |
| ! | ATTGTCTTTCCAATATTTAG+GGG | - | chr1.1:3267851-3267870 | MS.gene24371:intron | 25.0% |
| ! | CATTGTCTTTCCAATATTTA+GGG | - | chr1.1:3267850-3267869 | MS.gene24371:intron | 25.0% |
| ! | GAATAATAACTCTTGAATGT+TGG | - | chr1.1:3267647-3267666 | MS.gene24371:intron | 25.0% |
| ! | GATATAAAGTATAAGGTAAG+GGG | + | chr1.1:3267319-3267338 | None:intergenic | 25.0% |
| ! | GGATATAAAGTATAAGGTAA+GGG | + | chr1.1:3267320-3267339 | None:intergenic | 25.0% |
| ! | TAAGTGTTTGTTTGGTTATA+TGG | - | chr1.1:3265663-3265682 | MS.gene24371:intron | 25.0% |
| ! | TACATATGCCAAATATTTAG+AGG | - | chr1.1:3266450-3266469 | MS.gene24371:intron | 25.0% |
| ! | TACCTTATACTTTATATCCT+TGG | - | chr1.1:3267321-3267340 | MS.gene24371:intron | 25.0% |
| ! | TACTAGGAATTCTTTAATTG+TGG | - | chr1.1:3268115-3268134 | MS.gene24371:CDS | 25.0% |
| ! | TTGTGTAACAAAACACTTAT+AGG | - | chr1.1:3266043-3266062 | MS.gene24371:intron | 25.0% |
| ! | TTTCAATTATGGTTGTAGTT+AGG | + | chr1.1:3266196-3266215 | None:intergenic | 25.0% |
| !! | TAAGCAATGGTTTTCAATTA+TGG | + | chr1.1:3266207-3266226 | None:intergenic | 25.0% |
| !!! | AAGAGTTGAAGTTTTAAGTT+TGG | - | chr1.1:3267567-3267586 | MS.gene24371:intron | 25.0% |
| !!! | ATGCTCATTGTTTTAAATTG+TGG | - | chr1.1:3266083-3266102 | MS.gene24371:intron | 25.0% |
| !!! | ATTTTTTGTTGGGAAATATG+AGG | - | chr1.1:3267140-3267159 | MS.gene24371:intron | 25.0% |
| !!! | GTTTGTAGCTTATTTCTATA+AGG | - | chr1.1:3265918-3265937 | MS.gene24371:intron | 25.0% |
| !!! | TTTTTTTTAATCCTGATGAC+GGG | - | chr1.1:3266989-3267008 | MS.gene24371:CDS | 25.0% |
| !!! | TTTTTTTTTGGCTTTCAAAC+CGG | + | chr1.1:3266769-3266788 | None:intergenic | 25.0% |
| AACTCTAGACATATGGTTAA+AGG | + | chr1.1:3266896-3266915 | None:intergenic | 30.0% | |
| AAGGGAATCCAATCTATTTA+TGG | - | chr1.1:3266590-3266609 | MS.gene24371:intron | 30.0% | |
| ACACAATCATATAAGTGCTT+AGG | + | chr1.1:3266029-3266048 | None:intergenic | 30.0% | |
| ACTCTAGACATATGGTTAAA+GGG | + | chr1.1:3266895-3266914 | None:intergenic | 30.0% | |
| AGGGAATCCAATCTATTTAT+GGG | - | chr1.1:3266591-3266610 | MS.gene24371:intron | 30.0% | |
| AGTTTCTTATAAGCATACAG+GGG | - | chr1.1:3266645-3266664 | MS.gene24371:intron | 30.0% | |
| ATTGTTTAACAATCAAGGTG+TGG | - | chr1.1:3266848-3266867 | MS.gene24371:intron | 30.0% | |
| CAAATATTTAGAGGAACTTG+CGG | - | chr1.1:3266459-3266478 | MS.gene24371:intron | 30.0% | |
| CAGCAGTTATATGAGAAAAA+TGG | + | chr1.1:3266525-3266544 | None:intergenic | 30.0% | |
| CCTTATACTTTATATCCTTG+GGG | - | chr1.1:3267323-3267342 | MS.gene24371:intron | 30.0% | |
| GCAGTTATTAAGTGTTTGTT+TGG | - | chr1.1:3265655-3265674 | MS.gene24371:intron | 30.0% | |
| TAGAAATGGGAAAGAAACAA+AGG | + | chr1.1:3266496-3266515 | None:intergenic | 30.0% | |
| ! | AAATTTTATGGTCTCTGCAA+TGG | - | chr1.1:3266120-3266139 | MS.gene24371:intron | 30.0% |
| ! | AAGATCTGAAGGAATTTTGA+AGG | - | chr1.1:3266369-3266388 | MS.gene24371:intron | 30.0% |
| ! | AATCACGAAGAATTTTGTGT+GGG | - | chr1.1:3267693-3267712 | MS.gene24371:intron | 30.0% |
| ! | ACTTTTCCCATCTCTTAAAA+GGG | - | chr1.1:3266572-3266591 | MS.gene24371:intron | 30.0% |
| ! | AGATGTGCAATTTTTCTTGT+GGG | + | chr1.1:3267079-3267098 | None:intergenic | 30.0% |
| ! | CATTTTTCTCATATAACTGC+TGG | - | chr1.1:3266523-3266542 | MS.gene24371:intron | 30.0% |
| ! | CTTTTTCTCAATCTCACTTA+TGG | + | chr1.1:3267488-3267507 | None:intergenic | 30.0% |
| ! | TAGATGTGCAATTTTTCTTG+TGG | + | chr1.1:3267080-3267099 | None:intergenic | 30.0% |
| !! | GAATTTTGAAGGATCTAGAA+TGG | - | chr1.1:3266380-3266399 | MS.gene24371:intron | 30.0% |
| !! | GCTTATTTCTATAAGGTATC+AGG | - | chr1.1:3265925-3265944 | MS.gene24371:intron | 30.0% |
| !!! | ATTCTGTTGTTGTTGCTTTT+AGG | - | chr1.1:3267979-3267998 | MS.gene24371:CDS | 30.0% |
| AAAGCTCCCCATAAATAGAT+TGG | + | chr1.1:3266601-3266620 | None:intergenic | 35.0% | |
| AACAGAAGTGGTATTGTTGA+CGG | + | chr1.1:3265480-3265499 | None:intergenic | 35.0% | |
| ACTTCTGTTGTAGTAGAAGA+CGG | - | chr1.1:3265491-3265510 | MS.gene24371:intron | 35.0% | |
| AGAATGAGCAAGGTAATTGT+AGG | - | chr1.1:3267777-3267796 | MS.gene24371:intron | 35.0% | |
| AGAGCTTGTAGAATAAGCAA+TGG | + | chr1.1:3266220-3266239 | None:intergenic | 35.0% | |
| AGATATTAGGAGAATGAGCA+AGG | - | chr1.1:3267767-3267786 | MS.gene24371:intron | 35.0% | |
| AGGTTAAAAATAGCGTTTCG+AGG | - | chr1.1:3265718-3265737 | MS.gene24371:intron | 35.0% | |
| AGTCTTGAGGTTTAACTGTT+TGG | - | chr1.1:3267349-3267368 | MS.gene24371:intron | 35.0% | |
| ATACTTGAGGAAAACTGGAT+TGG | - | chr1.1:3266345-3266364 | MS.gene24371:intron | 35.0% | |
| ATCTATGAGATTCGGATGAT+GGG | - | chr1.1:3266944-3266963 | MS.gene24371:CDS | 35.0% | |
| CCCCAAGGATATAAAGTATA+AGG | + | chr1.1:3267326-3267345 | None:intergenic | 35.0% | |
| CGCAAGTTCCTCTAAATATT+TGG | + | chr1.1:3266461-3266480 | None:intergenic | 35.0% | |
| CTTAAAACTTCAACTCTTCG+AGG | + | chr1.1:3267565-3267584 | None:intergenic | 35.0% | |
| CTTGAATGTTGGATCAGTAA+GGG | - | chr1.1:3267658-3267677 | MS.gene24371:intron | 35.0% | |
| GAAATATGAGGAACAAGAGA+AGG | - | chr1.1:3267152-3267171 | MS.gene24371:intron | 35.0% | |
| GAACAAGAGTGAAGTAGAAT+GGG | - | chr1.1:3267174-3267193 | MS.gene24371:intron | 35.0% | |
| GAGAATGATGATTCTTCTTC+TGG | + | chr1.1:3265294-3265313 | None:intergenic | 35.0% | |
| GGGAATCCAATCTATTTATG+GGG | - | chr1.1:3266592-3266611 | MS.gene24371:intron | 35.0% | |
| GTTTCTTATAAGCATACAGG+GGG | - | chr1.1:3266646-3266665 | MS.gene24371:intron | 35.0% | |
| TATTTGGCATATGTAGTACC+AGG | + | chr1.1:3266445-3266464 | None:intergenic | 35.0% | |
| TCTTGAATGTTGGATCAGTA+AGG | - | chr1.1:3267657-3267676 | MS.gene24371:intron | 35.0% | |
| TCTTTCCAATATTTAGGGGT+GGG | - | chr1.1:3267855-3267874 | MS.gene24371:intron | 35.0% | |
| TTTAAGAGATGGGAAAAGTG+AGG | + | chr1.1:3266571-3266590 | None:intergenic | 35.0% | |
| TTTCTTGTGGGTGTTTGATT+TGG | + | chr1.1:3267067-3267086 | None:intergenic | 35.0% | |
| ! | ATATGTCTAGAGTTCGAATC+CGG | - | chr1.1:3266902-3266921 | MS.gene24371:intron | 35.0% |
| ! | CAATCACGAAGAATTTTGTG+TGG | - | chr1.1:3267692-3267711 | MS.gene24371:intron | 35.0% |
| ! | CACTTTTCCCATCTCTTAAA+AGG | - | chr1.1:3266571-3266590 | MS.gene24371:intron | 35.0% |
| ! | CGGTTTCTTTTTCTAACCAA+CGG | + | chr1.1:3265368-3265387 | None:intergenic | 35.0% |
| ! | CTATTTATGGGGAGCTTTTA+TGG | - | chr1.1:3266603-3266622 | MS.gene24371:intron | 35.0% |
| ! | GTAAGCTAAATCTTGAGTTG+TGG | + | chr1.1:3267543-3267562 | None:intergenic | 35.0% |
| ! | GTTGTAATTTGTGCAGCATT+GGG | - | chr1.1:3268189-3268208 | MS.gene24371:CDS | 35.0% |
| ! | TTGTAATTTGTGCAGCATTG+GGG | - | chr1.1:3268190-3268209 | MS.gene24371:CDS | 35.0% |
| ! | TTTCTTTTTCTAACCAACGG+TGG | + | chr1.1:3265365-3265384 | None:intergenic | 35.0% |
| !! | TGGATTCCCTTTTAAGAGAT+GGG | + | chr1.1:3266581-3266600 | None:intergenic | 35.0% |
| !! | TTGGATTCCCTTTTAAGAGA+TGG | + | chr1.1:3266582-3266601 | None:intergenic | 35.0% |
| AAGAGTGAAGTAGAATGGGA+AGG | - | chr1.1:3267178-3267197 | MS.gene24371:intron | 40.0% | |
| ACGTGGTATCCTTCTATGAA+AGG | - | chr1.1:3265533-3265552 | MS.gene24371:intron | 40.0% | |
| AGAGTGAAGTAGAATGGGAA+GGG | - | chr1.1:3267179-3267198 | MS.gene24371:intron | 40.0% | |
| CATCTATGAGATTCGGATGA+TGG | - | chr1.1:3266943-3266962 | MS.gene24371:CDS | 40.0% | |
| CGAAGAAAGCCTTTCATAGA+AGG | + | chr1.1:3265545-3265564 | None:intergenic | 40.0% | |
| CTAGAATGGTTGAAGGAACA+AGG | - | chr1.1:3266394-3266413 | MS.gene24371:intron | 40.0% | |
| GAAAGGCTTTCTTCGATTCT+TGG | - | chr1.1:3265550-3265569 | MS.gene24371:intron | 40.0% | |
| GAACAATCTGTCCCATAAAC+TGG | + | chr1.1:3268261-3268280 | None:intergenic | 40.0% | |
| GAATTGCAGATGCATACTTG+AGG | - | chr1.1:3266332-3266351 | MS.gene24371:intron | 40.0% | |
| GATGCATACTTGAGGAAAAC+TGG | - | chr1.1:3266340-3266359 | MS.gene24371:intron | 40.0% | |
| GATTTCCCACCCCTAAATAT+TGG | + | chr1.1:3267863-3267882 | None:intergenic | 40.0% | |
| GGAACAAGAGTGAAGTAGAA+TGG | - | chr1.1:3267173-3267192 | MS.gene24371:intron | 40.0% | |
| GGAGATGCATCTATGAGATT+CGG | - | chr1.1:3266936-3266955 | MS.gene24371:CDS | 40.0% | |
| GGATTCGAACTCTAGACATA+TGG | + | chr1.1:3266903-3266922 | None:intergenic | 40.0% | |
| GTACCTGCTTTGTAATAACC+TGG | + | chr1.1:3266549-3266568 | None:intergenic | 40.0% | |
| GTCTTCTACTACAACAGAAG+TGG | + | chr1.1:3265492-3265511 | None:intergenic | 40.0% | |
| GTCTTTCCAATATTTAGGGG+TGG | - | chr1.1:3267854-3267873 | MS.gene24371:intron | 40.0% | |
| TATGTAGTACCAGGTGAACT+TGG | + | chr1.1:3266436-3266455 | None:intergenic | 40.0% | |
| TCTGATTCAGAGTTCACTAC+AGG | + | chr1.1:3267885-3267904 | None:intergenic | 40.0% | |
| TGGGAAGGGAAAATGAATGA+AGG | - | chr1.1:3267193-3267212 | MS.gene24371:intron | 40.0% | |
| TTAGGTATCTGAAAAGCTCC+TGG | - | chr1.1:3267997-3268016 | MS.gene24371:CDS | 40.0% | |
| TTCATCTTCTTATCCACCGT+TGG | - | chr1.1:3265349-3265368 | MS.gene24371:intron | 40.0% | |
| TTTGTCGTTGTGGAGTTTCA+TGG | + | chr1.1:3265450-3265469 | None:intergenic | 40.0% | |
| ! | ACTGGATTGGAAAGATCTGA+AGG | - | chr1.1:3266358-3266377 | MS.gene24371:intron | 40.0% |
| ! | CAGGGTAAAGTTTTCGATAG+CGG | + | chr1.1:3265388-3265407 | None:intergenic | 40.0% |
| ! | GAAGGATCTAGAATGGTTGA+AGG | - | chr1.1:3266387-3266406 | MS.gene24371:intron | 40.0% |
| ! | GGTTGTAATTTGTGCAGCAT+TGG | - | chr1.1:3268188-3268207 | MS.gene24371:CDS | 40.0% |
| ! | TTAATCTGGGAATGGACTCA+TGG | + | chr1.1:3267378-3267397 | None:intergenic | 40.0% |
| !! | AAGCACTTCTGAGACTGTTT+GGG | - | chr1.1:3265863-3265882 | MS.gene24371:intron | 40.0% |
| !! | CGAACGCATTGTTGATGATT+CGG | - | chr1.1:3265601-3265620 | MS.gene24371:intron | 40.0% |
| !! | TTTAATCCTGATGACGGGAA+TGG | - | chr1.1:3266994-3267013 | MS.gene24371:CDS | 40.0% |
| AACCTCAAGACTAATCCCCA+AGG | + | chr1.1:3267341-3267360 | None:intergenic | 45.0% | |
| AGAGTTCGAATCCGGATGAT+GGG | - | chr1.1:3266910-3266929 | MS.gene24371:intron | 45.0% | |
| AGTACCAGGTGAACTTGGAT+TGG | + | chr1.1:3266431-3266450 | None:intergenic | 45.0% | |
| AGTGGTATTGTTGACGGTGT+TGG | + | chr1.1:3265474-3265493 | None:intergenic | 45.0% | |
| ATAGAAGGATACCACGTGTC+AGG | + | chr1.1:3265530-3265549 | None:intergenic | 45.0% | |
| ATTCCCAATCCAAGTTCACC+TGG | - | chr1.1:3266424-3266443 | MS.gene24371:intron | 45.0% | |
| CAAATGGGAAGGAGATGTAC+AGG | - | chr1.1:3268042-3268061 | MS.gene24371:CDS | 45.0% | |
| CATGGTTGTTGCAGTTGAGT+GGG | + | chr1.1:3265221-3265240 | None:intergenic | 45.0% | |
| CGCTATCGAAAACTTTACCC+TGG | - | chr1.1:3265386-3265405 | MS.gene24371:intron | 45.0% | |
| CGGTGGATAAGAAGATGAAG+AGG | + | chr1.1:3265348-3265367 | None:intergenic | 45.0% | |
| GCTTGCAGAGGTAGATTACT+AGG | - | chr1.1:3268099-3268118 | MS.gene24371:CDS | 45.0% | |
| GGCTGATGAGGTTGAAATTG+CGG | + | chr1.1:3266154-3266173 | None:intergenic | 45.0% | |
| GGCTGTGAACCTTTGTATTG+CGG | + | chr1.1:3266175-3266194 | None:intergenic | 45.0% | |
| GTACCAGGTGAACTTGGATT+GGG | + | chr1.1:3266430-3266449 | None:intergenic | 45.0% | |
| GTATCTGAAAAGCTCCTGGA+AGG | - | chr1.1:3268001-3268020 | MS.gene24371:CDS | 45.0% | |
| GTGTTGAAGCGTGTTCGATT+GGG | + | chr1.1:3265272-3265291 | None:intergenic | 45.0% | |
| GTTGTAGTAGAAGACGGTGA+AGG | - | chr1.1:3265497-3265516 | MS.gene24371:intron | 45.0% | |
| TAAGCATACAGGGGGAATAC+CGG | - | chr1.1:3266654-3266673 | MS.gene24371:intron | 45.0% | |
| TAGAAGGATACCACGTGTCA+GGG | + | chr1.1:3265529-3265548 | None:intergenic | 45.0% | |
| TAGAGTTCGAATCCGGATGA+TGG | - | chr1.1:3266909-3266928 | MS.gene24371:intron | 45.0% | |
| TGAAAAGCTCCTGGAAGGTA+AGG | - | chr1.1:3268006-3268025 | MS.gene24371:CDS | 45.0% | |
| TGGCCAGGTTATTACAAAGC+AGG | - | chr1.1:3266543-3266562 | MS.gene24371:intron | 45.0% | |
| TTCCCAGGAGGAACAACATT+TGG | - | chr1.1:3266683-3266702 | MS.gene24371:intron | 45.0% | |
| TTCTCATATAACTGCTGGCC+AGG | - | chr1.1:3266528-3266547 | MS.gene24371:intron | 45.0% | |
| ! | AATTTGTGCAGCATTGGGGT+CGG | - | chr1.1:3268194-3268213 | MS.gene24371:CDS | 45.0% |
| !! | AGTGTTGATGATGGTGGGAA+TGG | + | chr1.1:3265248-3265267 | None:intergenic | 45.0% |
| !! | ATCCTTGGGGATTAGTCTTG+AGG | - | chr1.1:3267336-3267355 | MS.gene24371:intron | 45.0% |
| !! | CAAGCACTTCTGAGACTGTT+TGG | - | chr1.1:3265862-3265881 | MS.gene24371:intron | 45.0% |
| !! | CGATTGGGAAGTGTTGATGA+TGG | + | chr1.1:3265257-3265276 | None:intergenic | 45.0% |
| !! | TGAGATTCGGATGATGGGAA+TGG | - | chr1.1:3266949-3266968 | MS.gene24371:CDS | 45.0% |
| !! | TGGGAAGTGTTGATGATGGT+GGG | + | chr1.1:3265253-3265272 | None:intergenic | 45.0% |
| !! | TTGGGAAGTGTTGATGATGG+TGG | + | chr1.1:3265254-3265273 | None:intergenic | 45.0% |
| AAGCATACAGGGGGAATACC+GGG | - | chr1.1:3266655-3266674 | MS.gene24371:intron | 50.0% | |
| AAGGACAAATCCCTGACACG+TGG | - | chr1.1:3265516-3265535 | MS.gene24371:intron | 50.0% | |
| AGGAGCTGGAGTTCTGCAAA+TGG | - | chr1.1:3268026-3268045 | MS.gene24371:CDS | 50.0% | |
| ATTAGTCGCCCACCATTGGT+GGG | - | chr1.1:3266736-3266755 | MS.gene24371:intron | 50.0% | |
| CCACTCAACTGCAACAACCA+TGG | - | chr1.1:3265219-3265238 | MS.gene24371:CDS | 50.0% | |
| CCATGGTTGTTGCAGTTGAG+TGG | + | chr1.1:3265222-3265241 | None:intergenic | 50.0% | |
| CCTCATCAGCCGCAATACAA+AGG | - | chr1.1:3266163-3266182 | MS.gene24371:intron | 50.0% | |
| CCTCATCTCTTCGGTGATTC+CGG | + | chr1.1:3265420-3265439 | None:intergenic | 50.0% | |
| CCTTTGTATTGCGGCTGATG+AGG | + | chr1.1:3266166-3266185 | None:intergenic | 50.0% | |
| CTGGAGTTCTGCAAATGGGA+AGG | - | chr1.1:3268031-3268050 | MS.gene24371:CDS | 50.0% | |
| CTTTACCCTGGTGAAACCAC+CGG | - | chr1.1:3265398-3265417 | MS.gene24371:CDS | 50.0% | |
| GAAGCTTAACGTGCTTGCAG+AGG | - | chr1.1:3268087-3268106 | MS.gene24371:CDS | 50.0% | |
| GCATCTCCATTCCCATCATC+CGG | + | chr1.1:3266924-3266943 | None:intergenic | 50.0% | |
| GGAGCTGGAGTTCTGCAAAT+GGG | - | chr1.1:3268027-3268046 | MS.gene24371:CDS | 50.0% | |
| GGCAACGAACCTCATCTCTT+CGG | + | chr1.1:3265429-3265448 | None:intergenic | 50.0% | |
| GGCCAAATGTTGTTCCTCCT+GGG | + | chr1.1:3266688-3266707 | None:intergenic | 50.0% | |
| TGATTCCGGTGGTTTCACCA+GGG | + | chr1.1:3265406-3265425 | None:intergenic | 50.0% | |
| TGGCCAAATGTTGTTCCTCC+TGG | + | chr1.1:3266689-3266708 | None:intergenic | 50.0% | |
| ! | ATTTGTGCAGCATTGGGGTC+GGG | - | chr1.1:3268195-3268214 | MS.gene24371:CDS | 50.0% |
| ! | GGTGTTGAAGCGTGTTCGAT+TGG | + | chr1.1:3265273-3265292 | None:intergenic | 50.0% |
| !! | AGTCTCAGAAGTGCTTGCGT+CGG | + | chr1.1:3265859-3265878 | None:intergenic | 50.0% |
| !! | GATGGTGGGAATGGTAACCA+TGG | + | chr1.1:3265239-3265258 | None:intergenic | 50.0% |
| !! | TCGAATCCGGATGATGGGAA+TGG | - | chr1.1:3266915-3266934 | MS.gene24371:intron | 50.0% |
| !!! | CGGTGTTGGTTTTGTCGTTG+TGG | + | chr1.1:3265460-3265479 | None:intergenic | 50.0% |
| ACTCCAGCTCCTTACCTTCC+AGG | + | chr1.1:3268018-3268037 | None:intergenic | 55.0% | |
| CATCTCTTCGGTGATTCCGG+TGG | + | chr1.1:3265417-3265436 | None:intergenic | 55.0% | |
| CCGGAATCACCGAAGAGATG+AGG | - | chr1.1:3265417-3265436 | MS.gene24371:CDS | 55.0% | |
| CTAATCCGGCTCATGCGTAG+AGG | + | chr1.1:3266721-3266740 | None:intergenic | 55.0% | |
| GAATACCGGGTTCGATTCCC+AGG | - | chr1.1:3266668-3266687 | MS.gene24371:intron | 55.0% | |
| GCATCTCCATTCCCGTCATC+AGG | + | chr1.1:3267003-3267022 | None:intergenic | 55.0% | |
| GTGATTCCGGTGGTTTCACC+AGG | + | chr1.1:3265407-3265426 | None:intergenic | 55.0% | |
| GTTTCCGACCCACCAATGGT+GGG | + | chr1.1:3266747-3266766 | None:intergenic | 55.0% | |
| TTCCTCCTGGGAATCGAACC+CGG | + | chr1.1:3266676-3266695 | None:intergenic | 55.0% | |
| ! | ACCATTGGTGGGTCGGAAAC+CGG | - | chr1.1:3266747-3266766 | MS.gene24371:intron | 55.0% |
| ! | GATTAGTCGCCCACCATTGG+TGG | - | chr1.1:3266735-3266754 | MS.gene24371:intron | 55.0% |
| !! | CCAATGGTGGGCGACTAATC+CGG | + | chr1.1:3266735-3266754 | None:intergenic | 55.0% |
| GCATGCCTCTACGCATGAGC+CGG | - | chr1.1:3266713-3266732 | MS.gene24371:intron | 60.0% | |
| GCTCCTGGAAGGTAAGGAGC+TGG | - | chr1.1:3268012-3268031 | MS.gene24371:CDS | 60.0% | |
| GGTTTCCGACCCACCAATGG+TGG | + | chr1.1:3266748-3266767 | None:intergenic | 60.0% | |
| TACCGGGTTCGATTCCCAGG+AGG | - | chr1.1:3266671-3266690 | MS.gene24371:intron | 60.0% | |
| ! | ACCGGTTTCCGACCCACCAA+TGG | + | chr1.1:3266751-3266770 | None:intergenic | 60.0% |
| ! | ATGCGTAGAGGCATGCGCAC+TGG | + | chr1.1:3266709-3266728 | None:intergenic | 60.0% |
| !! | CCGGATTAGTCGCCCACCAT+TGG | - | chr1.1:3266732-3266751 | MS.gene24371:intron | 60.0% |
| ! | GTCGCCCACCATTGGTGGGT+CGG | - | chr1.1:3266740-3266759 | MS.gene24371:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 3265200 | 3268297 | 3265200 | ID=MS.gene24371 |
| chr1.1 | mRNA | 3265200 | 3268297 | 3265200 | ID=MS.gene24371.t1;Parent=MS.gene24371 |
| chr1.1 | exon | 3267862 | 3268297 | 3267862 | ID=MS.gene24371.t1.exon1;Parent=MS.gene24371.t1 |
| chr1.1 | CDS | 3267862 | 3268297 | 3267862 | ID=cds.MS.gene24371.t1;Parent=MS.gene24371.t1 |
| chr1.1 | exon | 3266933 | 3267156 | 3266933 | ID=MS.gene24371.t1.exon2;Parent=MS.gene24371.t1 |
| chr1.1 | CDS | 3266933 | 3267156 | 3266933 | ID=cds.MS.gene24371.t1;Parent=MS.gene24371.t1 |
| chr1.1 | exon | 3265389 | 3265496 | 3265389 | ID=MS.gene24371.t1.exon3;Parent=MS.gene24371.t1 |
| chr1.1 | CDS | 3265389 | 3265496 | 3265389 | ID=cds.MS.gene24371.t1;Parent=MS.gene24371.t1 |
| chr1.1 | exon | 3265200 | 3265292 | 3265200 | ID=MS.gene24371.t1.exon4;Parent=MS.gene24371.t1 |
| chr1.1 | CDS | 3265200 | 3265292 | 3265200 | ID=cds.MS.gene24371.t1;Parent=MS.gene24371.t1 |
| Gene Sequence |
| Protein sequence |
