AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050675


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050675.t1 MTR_7g117970 82.264 265 7 1 1 225 1 265 6.78e-152 422
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050675.t1 AT3G61870 78.818 203 41 1 25 225 70 272 1.41e-114 328
MS.gene050675.t1 AT3G61870 76.552 145 32 1 25 167 70 214 2.45e-78 236

Find 67 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTACCTCAGTAAGTTTC+TGG 0.119805 7.3:+646076 None:intergenic
CAGAGCAATGTGAAGATTTC+TGG 0.157106 7.3:+644451 None:intergenic
TACTCTATATGCTGGCTATT+TGG 0.163712 7.3:-646232 MS.gene050675:CDS
ACTCTATATGCTGGCTATTT+GGG 0.167865 7.3:-646231 MS.gene050675:CDS
AATGCTGGATCCATACTTCT+AGG 0.237863 7.3:-645704 MS.gene050675:CDS
CTTGCTGTTGGTGGAGAGTT+TGG 0.257500 7.3:-646318 MS.gene050675:CDS
CTACAGGCATTACCGTCTTA+TGG 0.261340 7.3:-644523 MS.gene050675:intron
CCAGGTCCACATTTATTTGC+AGG 0.291376 7.3:-645617 MS.gene050675:CDS
GGATCCATACTTCTAGGATT+TGG 0.333492 7.3:-645698 MS.gene050675:CDS
GACACCAAATCCTAGAAGTA+TGG 0.335633 7.3:+645694 None:intergenic
GGTGGCAATGGCGCCGAGTT+AGG 0.351922 7.3:-646209 MS.gene050675:CDS
TTCTGGATTTCAAGTTCAAC+AGG 0.368955 7.3:+646093 None:intergenic
CCACTGGACTTGATATTGTA+TGG 0.370736 7.3:-644391 MS.gene050675:CDS
TTGCTGTTGGTGGAGAGTTT+GGG 0.379213 7.3:-646317 MS.gene050675:CDS
TACAGGCATTACCGTCTTAT+GGG 0.383650 7.3:-644522 MS.gene050675:intron
AGGACAGGAAAGCTATTTCC+AGG 0.388149 7.3:-645635 MS.gene050675:CDS
CCATCAGGGGCGACCGGTGC+AGG 0.389468 7.3:+646144 None:intergenic
CTCATTCACCCCATTGTGTT+GGG 0.394218 7.3:-646270 MS.gene050675:CDS
TCTAGGATTTGGTGTCTTTG+AGG 0.397090 7.3:-645687 MS.gene050675:CDS
ATTTCAAGTGCTTTACCATC+AGG 0.400230 7.3:+646129 None:intergenic
AAGTGTTTGAGTTCACAAAA+TGG 0.411552 7.3:-644367 MS.gene050675:CDS
TTCTTCTATACTCTATATGC+TGG 0.412278 7.3:-646240 MS.gene050675:CDS
AACAAACCACCCAACACAAT+GGG 0.420393 7.3:+646261 None:intergenic
GTCTTTGAGGCTGTTGGTGG+AGG 0.422220 7.3:-645674 MS.gene050675:CDS
GGAGAGTTTGGGATATTTGA+AGG 0.424876 7.3:-646306 MS.gene050675:CDS
GTTTCACTGCCTTTCTGCAT+CGG 0.434740 7.3:+644476 None:intergenic
AGCTTATCAAAGGTTCATAC+AGG 0.459882 7.3:-645739 MS.gene050675:CDS
CCACATTTATTTGCAGGAGC+AGG 0.460193 7.3:-645611 MS.gene050675:intron
TTTGGTGTCTTTGAGGCTGT+TGG 0.460543 7.3:-645680 MS.gene050675:CDS
TTTGTGTGGCAGATTCCCAC+TGG 0.462816 7.3:-644407 MS.gene050675:CDS
TCTCATTCACCCCATTGTGT+TGG 0.487054 7.3:-646271 MS.gene050675:CDS
TGTCTTGATGCTTGAAAGAA+TGG 0.487965 7.3:+646589 None:intergenic
CTGGCTATTTGGGGTGGCAA+TGG 0.493451 7.3:-646221 MS.gene050675:CDS
CAGGATGCACTTGCTGTTGG+TGG 0.511437 7.3:-646327 MS.gene050675:CDS
CCTGCACCGGTCGCCCCTGA+TGG 0.520003 7.3:-646144 MS.gene050675:CDS
GCTTTACCATCAGGGGCGAC+CGG 0.523702 7.3:+646138 None:intergenic
ATTCACCCCATTGTGTTGGG+TGG 0.524385 7.3:-646267 MS.gene050675:CDS
AGGGATAAACACTTTAATGC+TGG 0.528614 7.3:-645719 MS.gene050675:CDS
GGTGTCTTTGAGGCTGTTGG+TGG 0.529522 7.3:-645677 MS.gene050675:CDS
CTCTATATGCTGGCTATTTG+GGG 0.531439 7.3:-646230 MS.gene050675:CDS
TTCAAGTGCTTTACCATCAG+GGG 0.537450 7.3:+646131 None:intergenic
CATTACCGTCTTATGGGCAC+TGG 0.546801 7.3:-644516 MS.gene050675:CDS
GAGGACTCAACACATGGTTA+AGG 0.547682 7.3:-645655 MS.gene050675:CDS
CCTGCAAATAAATGTGGACC+TGG 0.547982 7.3:+645617 None:intergenic
ATTTCAAGTTCAACAGGTGA+TGG 0.552879 7.3:+646099 None:intergenic
TGAATGTTCTTCTCTTTGTG+TGG 0.562680 7.3:-644421 MS.gene050675:CDS
CTCAACACATGGTTAAGGAC+AGG 0.563107 7.3:-645650 MS.gene050675:CDS
TTTCAAGTGCTTTACCATCA+GGG 0.566094 7.3:+646130 None:intergenic
GAGAGGAAAGAGCTTATCAA+AGG 0.578252 7.3:-645749 MS.gene050675:CDS
GAAACAACTCAAACCTGCAC+CGG 0.583822 7.3:-646157 MS.gene050675:CDS
GAACAAACCACCCAACACAA+TGG 0.584006 7.3:+646260 None:intergenic
TGCTGCCAGTGCCCATAAGA+CGG 0.586926 7.3:+644511 None:intergenic
CCTGCTCCTGCAAATAAATG+TGG 0.592193 7.3:+645611 None:intergenic
TCACTGCCTTTCTGCATCGG+TGG 0.596727 7.3:+644479 None:intergenic
CTAGTACCACCGATGCAGAA+AGG 0.597429 7.3:-644485 MS.gene050675:CDS
GTCTTGATGCTTGAAAGAAT+GGG 0.604119 7.3:+646590 None:intergenic
AAACAGGATGCACTTGCTGT+TGG 0.612832 7.3:-646330 MS.gene050675:intron
CCATACAATATCAAGTCCAG+TGG 0.632516 7.3:+644391 None:intergenic
TCAAGTTCAACAGGTGATGG+CGG 0.633139 7.3:+646102 None:intergenic
AAGCTTGACAAGACTGAGTG+TGG 0.639748 7.3:+646613 None:intergenic
TATATGCTGGCTATTTGGGG+TGG 0.656872 7.3:-646227 MS.gene050675:CDS
CATACAATATCAAGTCCAGT+GGG 0.666329 7.3:+644392 None:intergenic
GCTTATCAAAGGTTCATACA+GGG 0.677877 7.3:-645738 MS.gene050675:CDS
TTGGTGGAGGACTCAACACA+TGG 0.688787 7.3:-645661 MS.gene050675:CDS
CTTGACAAGACTGAGTGTGG+AGG 0.697793 7.3:+646616 None:intergenic
ACAAACCACCCAACACAATG+GGG 0.717466 7.3:+646262 None:intergenic
TGAAATCCAGAAACTTACTG+AGG 0.721925 7.3:-646082 MS.gene050675:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTTTGTGATGTA+AGG - chr7.3:644989-645008 MS.gene050675:intron 15.0%
!! AAAAGAGTAAAGAATAGAAT+AGG + chr7.3:644597-644616 None:intergenic 20.0%
!! TTTATTTAACAGAAGCAAAA+AGG + chr7.3:645517-645536 None:intergenic 20.0%
!!! AACTAATATTTTATGTGATC+CGG - chr7.3:646308-646327 MS.gene050675:CDS 20.0%
!!! CACATAAAATATTAGTTTGT+TGG + chr7.3:646305-646324 None:intergenic 20.0%
!!! TAAAGAAAATTGATAACACT+TGG - chr7.3:646424-646443 MS.gene050675:intron 20.0%
! AAGCATGCAATAATACATAA+AGG + chr7.3:644945-644964 None:intergenic 25.0%
! AAGTACATTTAGAAAACAGA+GGG + chr7.3:645474-645493 None:intergenic 25.0%
! AATAGGGGTTACTTAAAATT+CGG + chr7.3:646209-646228 None:intergenic 25.0%
! AATCACATTTCCATTCTTAT+TGG - chr7.3:644543-644562 MS.gene050675:intron 25.0%
! ACATAGATGAACTTATTAGT+GGG - chr7.3:645753-645772 MS.gene050675:intron 25.0%
! AGCATGCAATAATACATAAA+GGG + chr7.3:644944-644963 None:intergenic 25.0%
! ATCTAATGAAAACTTTAGTG+GGG + chr7.3:644479-644498 None:intergenic 25.0%
! CAAACTTAGTATTAAAATCC+AGG + chr7.3:645135-645154 None:intergenic 25.0%
! GATCTAATGAAAACTTTAGT+GGG + chr7.3:644480-644499 None:intergenic 25.0%
! TAAGTACATTTAGAAAACAG+AGG + chr7.3:645475-645494 None:intergenic 25.0%
! TCACATTGAGAGAAAAATAA+GGG - chr7.3:646056-646075 MS.gene050675:intron 25.0%
! TCTTATCTTTATCCCAAAAT+TGG + chr7.3:646339-646358 None:intergenic 25.0%
! TGATCTAATGAAAACTTTAG+TGG + chr7.3:644481-644500 None:intergenic 25.0%
! TTTCAACAACATTCATATCA+TGG + chr7.3:644634-644653 None:intergenic 25.0%
!! AATTTGCTCTTGAATCAAAT+GGG + chr7.3:645409-645428 None:intergenic 25.0%
!! ACTAATATTTTATGTGATCC+GGG - chr7.3:646309-646328 MS.gene050675:CDS 25.0%
!!! CACAAACTTGTTAAATCTTA+AGG - chr7.3:645719-645738 MS.gene050675:CDS 25.0%
!!! TAATTTGCTCTTGAATCAAA+TGG + chr7.3:645410-645429 None:intergenic 25.0%
!!! TGATTATCACTTTTCTGAAT+GGG + chr7.3:645904-645923 None:intergenic 25.0%
!!! TTGATTATCACTTTTCTGAA+TGG + chr7.3:645905-645924 None:intergenic 25.0%
AAAGTAGTAAAGTGAAGGTT+GGG + chr7.3:645809-645828 None:intergenic 30.0%
ACAACATTCATATCATGGAT+TGG + chr7.3:644629-644648 None:intergenic 30.0%
AGATGACAGGGTATAAATTT+AGG + chr7.3:645548-645567 None:intergenic 30.0%
AGTACATTTAGAAAACAGAG+GGG + chr7.3:645473-645492 None:intergenic 30.0%
AGTGGTAGTTTCATTAACTA+TGG - chr7.3:645106-645125 MS.gene050675:intron 30.0%
ATATTCAATCTGACGAAGTT+GGG - chr7.3:646362-646381 MS.gene050675:intron 30.0%
ATATTGAATTTGGATGGAAG+TGG + chr7.3:644445-644464 None:intergenic 30.0%
ATCCATAACTTGACTAAACA+AGG - chr7.3:645863-645882 MS.gene050675:intron 30.0%
ATGTACTTAAGAATTAGAGG+GGG - chr7.3:646087-646106 MS.gene050675:CDS 30.0%
ATGTATTATTGCATGCTTCT+TGG - chr7.3:644947-644966 MS.gene050675:intron 30.0%
ATTAAGAAGAACTTTCTCTC+AGG + chr7.3:645843-645862 None:intergenic 30.0%
CACATAGATGAACTTATTAG+TGG - chr7.3:645752-645771 MS.gene050675:CDS 30.0%
CATGTACTTAAGAATTAGAG+GGG - chr7.3:646086-646105 MS.gene050675:CDS 30.0%
CTAAGTTTGTAATTAGTGAG+AGG - chr7.3:645146-645165 MS.gene050675:intron 30.0%
GATATGAATGTTGTTGAAAC+AGG - chr7.3:644635-644654 MS.gene050675:intron 30.0%
GATGACAGGGTATAAATTTA+GGG + chr7.3:645547-645566 None:intergenic 30.0%
GCATGTACTTAAGAATTAGA+GGG - chr7.3:646085-646104 MS.gene050675:CDS 30.0%
GCTGTTTAAAAATGCATCAA+GGG + chr7.3:645442-645461 None:intergenic 30.0%
GTCACATTGAGAGAAAAATA+AGG - chr7.3:646055-646074 MS.gene050675:intron 30.0%
TATATTCAATCTGACGAAGT+TGG - chr7.3:646361-646380 MS.gene050675:intron 30.0%
TCCATAACTTGACTAAACAA+GGG - chr7.3:645864-645883 MS.gene050675:intron 30.0%
TTCTTCTATACTCTATATGC+TGG - chr7.3:644741-644760 MS.gene050675:intron 30.0%
TTTCATTAACTATGGTATCC+TGG - chr7.3:645114-645133 MS.gene050675:intron 30.0%
! AAGTGTTTGAGTTCACAAAA+TGG - chr7.3:646614-646633 MS.gene050675:CDS 30.0%
! ACAATTTGTTCAAACGTTCA+AGG + chr7.3:645677-645696 None:intergenic 30.0%
! AGACATTTTTACAAGATGAC+AGG + chr7.3:645561-645580 None:intergenic 30.0%
! CATTTTGAATAGTCCTAACT+CGG + chr7.3:644788-644807 None:intergenic 30.0%
! GACATTTTTACAAGATGACA+GGG + chr7.3:645560-645579 None:intergenic 30.0%
! GATGTAATGGAAAGTAGTTA+CGG - chr7.3:646145-646164 MS.gene050675:CDS 30.0%
! TGCTGTTTAAAAATGCATCA+AGG + chr7.3:645443-645462 None:intergenic 30.0%
! TTTGTGATGTAAGGACTTTT+CGG - chr7.3:644998-645017 MS.gene050675:intron 30.0%
!! AAAAAGGTGTTACCTGTAAA+TGG + chr7.3:645501-645520 None:intergenic 30.0%
!! ATTTTGAAAGATCTCAGATG+AGG - chr7.3:646120-646139 MS.gene050675:CDS 30.0%
!! TACAAAGTGTTGTCAAATAG+TGG - chr7.3:646250-646269 MS.gene050675:CDS 30.0%
AATGAAAACTTTAGTGGGGT+GGG + chr7.3:644475-644494 None:intergenic 35.0%
AGAACTTTCTCTCAGGTTTA+AGG + chr7.3:645836-645855 None:intergenic 35.0%
AGCTCCTTCTAGATTAAGTA+CGG + chr7.3:645613-645632 None:intergenic 35.0%
AGCTTATCAAAGGTTCATAC+AGG - chr7.3:645242-645261 MS.gene050675:intron 35.0%
AGGGATAAACACTTTAATGC+TGG - chr7.3:645262-645281 MS.gene050675:intron 35.0%
ATCGAGTATCTCTGAACAAT+AGG + chr7.3:646226-646245 None:intergenic 35.0%
ATGTACTTACCTCCATTTAC+AGG - chr7.3:645486-645505 MS.gene050675:intron 35.0%
CAAAGTAGTAAAGTGAAGGT+TGG + chr7.3:645810-645829 None:intergenic 35.0%
CAGTAACCAACCAACAAATT+AGG + chr7.3:645204-645223 None:intergenic 35.0%
CATAACTTGACTAAACAAGG+GGG - chr7.3:645866-645885 MS.gene050675:intron 35.0%
CATACAATATCAAGTCCAGT+GGG + chr7.3:646592-646611 None:intergenic 35.0%
CATTGAGAGAAAAATAAGGG+AGG - chr7.3:646059-646078 MS.gene050675:intron 35.0%
CCATAACTTGACTAAACAAG+GGG - chr7.3:645865-645884 MS.gene050675:intron 35.0%
CGCATGTACTTAAGAATTAG+AGG - chr7.3:646084-646103 MS.gene050675:CDS 35.0%
GCATCAAAGTAGTAAAGTGA+AGG + chr7.3:645814-645833 None:intergenic 35.0%
GCTTATCAAAGGTTCATACA+GGG - chr7.3:645243-645262 MS.gene050675:intron 35.0%
GGGACAATATTGAATTTGGA+TGG + chr7.3:644451-644470 None:intergenic 35.0%
GTACATTTAGAAAACAGAGG+GGG + chr7.3:645472-645491 None:intergenic 35.0%
GTCTTGATGCTTGAAAGAAT+GGG + chr7.3:644394-644413 None:intergenic 35.0%
GTGAATTGAGAGAGATTACA+GGG - chr7.3:645999-646018 MS.gene050675:intron 35.0%
GTTTAAAAATGCATCAAGGG+AGG + chr7.3:645439-645458 None:intergenic 35.0%
TAATGAAAACTTTAGTGGGG+TGG + chr7.3:644476-644495 None:intergenic 35.0%
TATTATTGCATGCTTCTTGG+TGG - chr7.3:644950-644969 MS.gene050675:intron 35.0%
TCCATTCTTATTGGATACCA+AGG - chr7.3:644552-644571 MS.gene050675:intron 35.0%
TCGAGTATCTCTGAACAATA+GGG + chr7.3:646225-646244 None:intergenic 35.0%
TGAAACTACCACTGATAAGA+AGG + chr7.3:645099-645118 None:intergenic 35.0%
TGAAATCCAGAAACTTACTG+AGG - chr7.3:644899-644918 MS.gene050675:intron 35.0%
TGAATGTTCTTCTCTTTGTG+TGG - chr7.3:646560-646579 MS.gene050675:intron 35.0%
TGAATTGAGAGAGATTACAG+GGG - chr7.3:646000-646019 MS.gene050675:intron 35.0%
TGGCAATAACAATGCTATAG+CGG - chr7.3:646270-646289 MS.gene050675:CDS 35.0%
TGTCTTGATGCTTGAAAGAA+TGG + chr7.3:644395-644414 None:intergenic 35.0%
TGTGAATTGAGAGAGATTAC+AGG - chr7.3:645998-646017 MS.gene050675:intron 35.0%
! AAGTGGAACAACATGTTTTG+AGG + chr7.3:644428-644447 None:intergenic 35.0%
! ACTCTATATGCTGGCTATTT+GGG - chr7.3:644750-644769 MS.gene050675:intron 35.0%
! AGATGAACTTATTAGTGGGT+TGG - chr7.3:645757-645776 MS.gene050675:intron 35.0%
! ATTAACGGTGTTAGAGGAAA+AGG - chr7.3:646023-646042 MS.gene050675:intron 35.0%
! ATTTCAAGTGCTTTACCATC+AGG + chr7.3:644855-644874 None:intergenic 35.0%
! CTGATGAGTACCTAATTTGT+TGG - chr7.3:645191-645210 MS.gene050675:intron 35.0%
! CTTGGATAATTTTTCCCTAC+AGG - chr7.3:646442-646461 MS.gene050675:intron 35.0%
! GGACTTTTCGGATTAAGTAA+TGG - chr7.3:645010-645029 MS.gene050675:intron 35.0%
! TACTCTATATGCTGGCTATT+TGG - chr7.3:644749-644768 MS.gene050675:intron 35.0%
! TTAACGGTGTTAGAGGAAAA+GGG - chr7.3:646024-646043 MS.gene050675:intron 35.0%
! TTGGTTGGTTACTGATATTC+AGG - chr7.3:645210-645229 MS.gene050675:intron 35.0%
! TTTCAAGTGCTTTACCATCA+GGG + chr7.3:644854-644873 None:intergenic 35.0%
!! ATTTCAAGTTCAACAGGTGA+TGG + chr7.3:644885-644904 None:intergenic 35.0%
!! TGAGTACCTAATTTGTTGGT+TGG - chr7.3:645195-645214 MS.gene050675:intron 35.0%
!! TTCTGGATTTCAAGTTCAAC+AGG + chr7.3:644891-644910 None:intergenic 35.0%
!!! CAACATGTTTTGAGGTTGAT+TGG + chr7.3:644420-644439 None:intergenic 35.0%
!!! GTTGGGAGTTTTAAGTAACA+TGG + chr7.3:645792-645811 None:intergenic 35.0%
AAAACTTCAAGCCATGTGCA+CGG - chr7.3:645929-645948 MS.gene050675:intron 40.0%
AACAAACCACCCAACACAAT+GGG + chr7.3:644723-644742 None:intergenic 40.0%
AATGCTGGATCCATACTTCT+AGG - chr7.3:645277-645296 MS.gene050675:intron 40.0%
AGTACAAGCCTTCTTATCAG+TGG - chr7.3:645088-645107 MS.gene050675:intron 40.0%
ATAAGACGGTAATGCCTGTA+GGG + chr7.3:646459-646478 None:intergenic 40.0%
ATCTTTGTAGCTCTCTGAGT+TGG - chr7.3:646386-646405 MS.gene050675:intron 40.0%
ATGGAAATGTGATTGCTGTG+AGG + chr7.3:644537-644556 None:intergenic 40.0%
CAGAGCAATGTGAAGATTTC+TGG + chr7.3:646533-646552 None:intergenic 40.0%
CCACTGGACTTGATATTGTA+TGG - chr7.3:646590-646609 MS.gene050675:CDS 40.0%
CCATACAATATCAAGTCCAG+TGG + chr7.3:646593-646612 None:intergenic 40.0%
CGAGTATCTCTGAACAATAG+GGG + chr7.3:646224-646243 None:intergenic 40.0%
GACACCAAATCCTAGAAGTA+TGG + chr7.3:645290-645309 None:intergenic 40.0%
GAGAGATTACAGGGGATTAA+CGG - chr7.3:646008-646027 MS.gene050675:intron 40.0%
GAGAGGAAAGAGCTTATCAA+AGG - chr7.3:645232-645251 MS.gene050675:intron 40.0%
GCCTTGGTATCCAATAAGAA+TGG + chr7.3:644556-644575 None:intergenic 40.0%
GGGAGGGACAATATTGAATT+TGG + chr7.3:644455-644474 None:intergenic 40.0%
TACAGGCATTACCGTCTTAT+GGG - chr7.3:646459-646478 MS.gene050675:intron 40.0%
TATCCCAAAATTGGCAATCC+CGG + chr7.3:646330-646349 None:intergenic 40.0%
TCTAGATTAAGTACGGCCAA+TGG + chr7.3:645606-645625 None:intergenic 40.0%
TCTTTGTAGCTCTCTGAGTT+GGG - chr7.3:646387-646406 MS.gene050675:intron 40.0%
TGCTTACCTCAGTAAGTTTC+TGG + chr7.3:644908-644927 None:intergenic 40.0%
TGGAAATGTGATTGCTGTGA+GGG + chr7.3:644536-644555 None:intergenic 40.0%
TGGTTACTGATATTCAGGAG+AGG - chr7.3:645215-645234 MS.gene050675:intron 40.0%
TTCAAGTGCTTTACCATCAG+GGG + chr7.3:644853-644872 None:intergenic 40.0%
TTGACGAACATTCTACCTGT+CGG + chr7.3:645652-645671 None:intergenic 40.0%
TTGGCCGTACTTAATCTAGA+AGG - chr7.3:645606-645625 MS.gene050675:intron 40.0%
! AAGGTGTTACCTGTAAATGG+AGG + chr7.3:645498-645517 None:intergenic 40.0%
! CCCCTTGTTTAGTCAAGTTA+TGG + chr7.3:645868-645887 None:intergenic 40.0%
! CTCTATATGCTGGCTATTTG+GGG - chr7.3:644751-644770 MS.gene050675:intron 40.0%
! CTCTGAGTTGGGAATTGTAT+TGG - chr7.3:646398-646417 MS.gene050675:intron 40.0%
! GGAGAGTTTGGGATATTTGA+AGG - chr7.3:644675-644694 MS.gene050675:intron 40.0%
! TTTTGATACTTCCGTGCACA+TGG + chr7.3:645943-645962 None:intergenic 40.0%
!! GGATCCATACTTCTAGGATT+TGG - chr7.3:645283-645302 MS.gene050675:intron 40.0%
!! TCTAGGATTTGGTGTCTTTG+AGG - chr7.3:645294-645313 MS.gene050675:intron 40.0%
AAAACTTTAGTGGGGTGGGA+GGG + chr7.3:644471-644490 None:intergenic 45.0%
AAGCTTGACAAGACTGAGTG+TGG + chr7.3:644371-644390 None:intergenic 45.0%
ACAAACCACCCAACACAATG+GGG + chr7.3:644722-644741 None:intergenic 45.0%
CACAATCATAACCCCCACTT+TGG + chr7.3:645982-646001 None:intergenic 45.0%
CATAAGACGGTAATGCCTGT+AGG + chr7.3:646460-646479 None:intergenic 45.0%
CCACATTTATTTGCAGGAGC+AGG - chr7.3:645370-645389 MS.gene050675:intron 45.0%
CCAGGTCCACATTTATTTGC+AGG - chr7.3:645364-645383 MS.gene050675:intron 45.0%
CCTGCAAATAAATGTGGACC+TGG + chr7.3:645367-645386 None:intergenic 45.0%
CCTGCTCCTGCAAATAAATG+TGG + chr7.3:645373-645392 None:intergenic 45.0%
CTACAGGCATTACCGTCTTA+TGG - chr7.3:646458-646477 MS.gene050675:intron 45.0%
CTCAACACATGGTTAAGGAC+AGG - chr7.3:645331-645350 MS.gene050675:intron 45.0%
CTCAGATGAGGTCGATGTAA+TGG - chr7.3:646132-646151 MS.gene050675:CDS 45.0%
CTCATTCACCCCATTGTGTT+GGG - chr7.3:644711-644730 MS.gene050675:intron 45.0%
GAAACAACTCAAACCTGCAC+CGG - chr7.3:644824-644843 MS.gene050675:intron 45.0%
GAACAAACCACCCAACACAA+TGG + chr7.3:644724-644743 None:intergenic 45.0%
GAGGACTCAACACATGGTTA+AGG - chr7.3:645326-645345 MS.gene050675:intron 45.0%
GTTTCACTGCCTTTCTGCAT+CGG + chr7.3:646508-646527 None:intergenic 45.0%
TCTCATTCACCCCATTGTGT+TGG - chr7.3:644710-644729 MS.gene050675:intron 45.0%
! AGGACAGGAAAGCTATTTCC+AGG - chr7.3:645346-645365 MS.gene050675:intron 45.0%
! GATCCGGGATTGCCAATTTT+GGG - chr7.3:646324-646343 MS.gene050675:CDS 45.0%
! TATATGCTGGCTATTTGGGG+TGG - chr7.3:644754-644773 MS.gene050675:intron 45.0%
! TCAAGTTCAACAGGTGATGG+CGG + chr7.3:644882-644901 None:intergenic 45.0%
! TGATCCGGGATTGCCAATTT+TGG - chr7.3:646323-646342 MS.gene050675:CDS 45.0%
! TTGCTGTTGGTGGAGAGTTT+GGG - chr7.3:644664-644683 MS.gene050675:intron 45.0%
!! AAACAGGATGCACTTGCTGT+TGG - chr7.3:644651-644670 MS.gene050675:intron 45.0%
!! ACCTGTCGGTTTCAAACTCT+TGG + chr7.3:645638-645657 None:intergenic 45.0%
!! CCTGTCGGTTTCAAACTCTT+GGG + chr7.3:645637-645656 None:intergenic 45.0%
!! TTTGGTGTCTTTGAGGCTGT+TGG - chr7.3:645301-645320 MS.gene050675:intron 45.0%
AATGGTGACCGTGGCACTTT+GGG + chr7.3:645588-645607 None:intergenic 50.0%
ACTTTGGCGCACACAGAGAA+AGG + chr7.3:645966-645985 None:intergenic 50.0%
ATTCACCCCATTGTGTTGGG+TGG - chr7.3:644714-644733 MS.gene050675:intron 50.0%
CATTACCGTCTTATGGGCAC+TGG - chr7.3:646465-646484 MS.gene050675:intron 50.0%
CTAGTACCACCGATGCAGAA+AGG - chr7.3:646496-646515 MS.gene050675:intron 50.0%
CTTGACAAGACTGAGTGTGG+AGG + chr7.3:644368-644387 None:intergenic 50.0%
GAAAACTTTAGTGGGGTGGG+AGG + chr7.3:644472-644491 None:intergenic 50.0%
TTCTCTGTGTGCGCCAAAGT+GGG - chr7.3:645966-645985 MS.gene050675:intron 50.0%
TTGGTGGAGGACTCAACACA+TGG - chr7.3:645320-645339 MS.gene050675:intron 50.0%
TTTCTCTGTGTGCGCCAAAG+TGG - chr7.3:645965-645984 MS.gene050675:intron 50.0%
TTTGTGTGGCAGATTCCCAC+TGG - chr7.3:646574-646593 MS.gene050675:CDS 50.0%
! ACGGTGTTAGAGGAAAAGGG+AGG - chr7.3:646027-646046 MS.gene050675:intron 50.0%
! CAGGGGATTAACGGTGTTAG+AGG - chr7.3:646017-646036 MS.gene050675:intron 50.0%
! CCCAAGAGTTTGAAACCGAC+AGG - chr7.3:645634-645653 MS.gene050675:CDS 50.0%
!! CTTGCTGTTGGTGGAGAGTT+TGG - chr7.3:644663-644682 MS.gene050675:intron 50.0%
CAATGGTGACCGTGGCACTT+TGG + chr7.3:645589-645608 None:intergenic 55.0%
GCTTGCTTGCTTGCTTGCCT+TGG + chr7.3:644572-644591 None:intergenic 55.0%
TCACTGCCTTTCTGCATCGG+TGG + chr7.3:646505-646524 None:intergenic 55.0%
TCTCTGTGTGCGCCAAAGTG+GGG - chr7.3:645967-645986 MS.gene050675:intron 55.0%
TGCTGCCAGTGCCCATAAGA+CGG + chr7.3:646473-646492 None:intergenic 55.0%
! CAAAGTGCCACGGTCACCAT+TGG - chr7.3:645587-645606 MS.gene050675:intron 55.0%
! CTGGCTATTTGGGGTGGCAA+TGG - chr7.3:644760-644779 MS.gene050675:intron 55.0%
! GTCTTCGTCCCAAAGTGCCA+CGG - chr7.3:645577-645596 MS.gene050675:intron 55.0%
!! CAGGATGCACTTGCTGTTGG+TGG - chr7.3:644654-644673 MS.gene050675:intron 55.0%
!! GGTGTCTTTGAGGCTGTTGG+TGG - chr7.3:645304-645323 MS.gene050675:intron 55.0%
!! GTCTTTGAGGCTGTTGGTGG+AGG - chr7.3:645307-645326 MS.gene050675:intron 55.0%
AGTACGGCCAATGGTGACCG+TGG + chr7.3:645597-645616 None:intergenic 60.0%
CTCTGTGTGCGCCAAAGTGG+GGG - chr7.3:645968-645987 MS.gene050675:intron 60.0%
GCTTTACCATCAGGGGCGAC+CGG + chr7.3:644846-644865 None:intergenic 60.0%
! GGTGGCAATGGCGCCGAGTT+AGG - chr7.3:644772-644791 MS.gene050675:intron 65.0%
CCATCAGGGGCGACCGGTGC+AGG + chr7.3:644840-644859 None:intergenic 75.0%
! CCTGCACCGGTCGCCCCTGA+TGG - chr7.3:644837-644856 MS.gene050675:intron 75.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 644361 646642 644361 ID=MS.gene050675
chr7.3 mRNA 644361 646642 644361 ID=MS.gene050675.t1;Parent=MS.gene050675
chr7.3 exon 646568 646642 646568 ID=MS.gene050675.t1.exon1;Parent=MS.gene050675.t1
chr7.3 CDS 646568 646642 646568 ID=cds.MS.gene050675.t1;Parent=MS.gene050675.t1
chr7.3 exon 646083 646346 646083 ID=MS.gene050675.t1.exon2;Parent=MS.gene050675.t1
chr7.3 CDS 646083 646346 646083 ID=cds.MS.gene050675.t1;Parent=MS.gene050675.t1
chr7.3 exon 645612 645771 645612 ID=MS.gene050675.t1.exon3;Parent=MS.gene050675.t1
chr7.3 CDS 645612 645771 645612 ID=cds.MS.gene050675.t1;Parent=MS.gene050675.t1
chr7.3 exon 644361 644539 644361 ID=MS.gene050675.t1.exon4;Parent=MS.gene050675.t1
chr7.3 CDS 644361 644539 644361 ID=cds.MS.gene050675.t1;Parent=MS.gene050675.t1
Gene Sequence

>MS.gene050675

ATGGCCTCCACACTCAGTCTTGTCAAGCTTCCCATTCTTTCAAGCATCAAGACACGCCAATCAACCTCAAAACATGTTGTTCCACTTCCATCCAAATTCAATATTGTCCCTCCCACCCCACTAAAGTTTTCATTAGATCATCAAATTAATATCAAACAAACTTCTCTTCTATCCCTCACAGCAATCACATTTCCATTCTTATTGGATACCAAGGCAAGCAAGCAAGCAAGCATCCTATTCTATTCTTTACTCTTTTGTTTTCTAACCAATCCATGATATGAATGTTGTTGAAACAGGATGCACTTGCTGTTGGTGGAGAGTTTGGGATATTTGAAGGAAGAACATTTGCTCTCATTCACCCCATTGTGTTGGGTGGTTTGTTCTTCTATACTCTATATGCTGGCTATTTGGGGTGGCAATGGCGCCGAGTTAGGACTATTCAAAATGATATTAATGAGCTCAAGAAACAACTCAAACCTGCACCGGTCGCCCCTGATGGTAAAGCACTTGAAATTTCACCGCCATCACCTGTTGAACTTGAAATCCAGAAACTTACTGAGGTAAGCAGTAGTATGTAGTACCCTTTATGTATTATTGCATGCTTCTTGGTGGTGATATATATATATATTATTATTTTTTTGTGATGTAAGGACTTTTCGGATTAAGTAATGGACACTGATTTTTATCATTAGATGAGCAATTTAGCTTATGTGTTATTTGAATCATTAGTACAAGCCTTCTTATCAGTGGTAGTTTCATTAACTATGGTATCCTGGATTTTAATACTAAGTTTGTAATTAGTGAGAGGAACTATACATAAAATGCTGAATCTGATGAGTACCTAATTTGTTGGTTGGTTACTGATATTCAGGAGAGGAAAGAGCTTATCAAAGGTTCATACAGGGATAAACACTTTAATGCTGGATCCATACTTCTAGGATTTGGTGTCTTTGAGGCTGTTGGTGGAGGACTCAACACATGGTTAAGGACAGGAAAGCTATTTCCAGGTCCACATTTATTTGCAGGAGCAGGTAAACACTAAATTCCCATTTGATTCAAGAGCAAATTACACTTACCTCCCTTGATGCATTTTTAAACAGCACAAACACCCCCTCTGTTTTCTAAATGTACTTACCTCCATTTACAGGTAACACCTTTTTGCTTCTGTTAAATAAAACTAAATCCCTAAATTTATACCCTGTCATCTTGTAAAAATGTCTTCGTCCCAAAGTGCCACGGTCACCATTGGCCGTACTTAATCTAGAAGGAGCTTCCCAAGAGTTTGAAACCGACAGGTAGAATGTTCGTCAAAGCCTTGAACGTTTGAACAAATTGTACAGAAACAGATTGAAAATCAACACAAACTTGTTAAATCTTAAGGCACAAAATAGCACATAGATGAACTTATTAGTGGGTTGGCAAAGCAATCCATGTTACTTAAAACTCCCAACCTTCACTTTACTACTTTGATGCCTTAAACCTGAGAGAAAGTTCTTCTTAATATCCATAACTTGACTAAACAAGGGGGTTAGCAAAGCAACCCATTCAGAAAAGTGATAATCAATTCAAAAACTTCAAGCCATGTGCACGGAAGTATCAAAACCTTTCTCTGTGTGCGCCAAAGTGGGGGTTATGATTGTGAATTGAGAGAGATTACAGGGGATTAACGGTGTTAGAGGAAAAGGGAGGTTAATGTCACATTGAGAGAAAAATAAGGGAGGTTCGCATGTACTTAAGAATTAGAGGGGGTGTTTGTGCTATTTTGAAAGATCTCAGATGAGGTCGATGTAATGGAAAGTAGTTACGGTAAAGCAATTTTTTCAAATAGTAGTAGCTATAGCGTAACCGAATTTTAAGTAACCCCTATTGTTCAGAGATACTCGATTTAGTACAAAGTGTTGTCAAATAGTGGCAATAACAATGCTATAGCGGTGTAGTGTACCAACAAACTAATATTTTATGTGATCCGGGATTGCCAATTTTGGGATAAAGATAAGAAATATATTCAATCTGACGAAGTTGGGAATCTTTGTAGCTCTCTGAGTTGGGAATTGTATTGGTTTTAAAGAAAATTGATAACACTTGGATAATTTTTCCCTACAGGCATTACCGTCTTATGGGCACTGGCAGCAGCTCTAGTACCACCGATGCAGAAAGGCAGTGAAACAGCCAGAAATCTTCACATTGCTCTGAATACATTGAATGTTCTTCTCTTTGTGTGGCAGATTCCCACTGGACTTGATATTGTATGGAAAGTGTTTGAGTTCACAAAATGGCCTTGA

Protein sequence

>MS.gene050675.t1

MASTLSLVKLPILSSIKTRQSTSKHDALAVGGEFGIFEGRTFALIHPIVLGGLFFYTLYAGYLGWQWRRVRTIQNDINELKKQLKPAPVAPDGKALEISPPSPVELEIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTKWP