AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24397.t1 MTR_1g019620 94.085 355 4 1 1 338 1 355 0.0 669
MS.gene24397.t1 MTR_1g016110 93.521 355 6 1 1 338 1 355 0.0 663
MS.gene24397.t1 MTR_1g016110 98.052 308 6 0 31 338 1 308 0.0 612
MS.gene24397.t1 MTR_1g070360 34.899 298 142 11 37 326 17 270 2.90e-41 145
MS.gene24397.t1 MTR_6g086600 39.444 180 104 3 38 217 173 347 2.84e-30 120
MS.gene24397.t1 MTR_6g086600 39.444 180 104 3 38 217 164 338 3.26e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24397.t1 AT5G50960 73.410 346 74 2 1 328 1 346 0.0 520
MS.gene24397.t1 AT4G19540 43.005 193 100 5 37 226 38 223 1.69e-37 136
MS.gene24397.t1 AT3G24430 39.444 180 104 3 38 217 172 346 1.83e-30 121

Find 85 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATTAAATTCAACATTTC+AGG 0.198831 1.1:-3520581 None:intergenic
CCTTCTAGGCCAAGCATCTT+TGG 0.224706 1.1:-3520080 None:intergenic
GGTGTATCTCTTGACCTTCT+AGG 0.281189 1.1:-3520094 None:intergenic
GTCTATGTTGAGTCTAATCT+TGG 0.283572 1.1:+3520140 MS.gene24397:CDS
AATCTTGGGGTCATGTCAAT+TGG 0.295181 1.1:+3520155 MS.gene24397:CDS
ATCCAGACGAAGCTGTTATA+TGG 0.325193 1.1:+3520192 MS.gene24397:CDS
TTTATGAAGATTACAGATAA+TGG 0.328286 1.1:+3520506 MS.gene24397:CDS
CTTCTAGGCCAAGCATCTTT+GGG 0.359162 1.1:-3520079 None:intergenic
CTAATTGTTGATGCTCCGCC+TGG 0.377996 1.1:+3520284 MS.gene24397:CDS
CAGCTAACGCAAATGCCAGC+TGG 0.379548 1.1:-3520004 None:intergenic
CCAAAGATGCTTGGCCTAGA+AGG 0.402010 1.1:+3520080 MS.gene24397:CDS
CCAAGCATCTTTGGGATGCT+TGG 0.406720 1.1:-3520071 None:intergenic
AAAGTCGGAGTGAAAGTTCT+TGG 0.411803 1.1:+3520434 MS.gene24397:CDS
TCTATGTTGAGTCTAATCTT+GGG 0.416626 1.1:+3520141 MS.gene24397:CDS
CACTGTGAAACATAAGATAC+TGG 0.420840 1.1:+3519938 MS.gene24397:CDS
AAGTCGGAGTGAAAGTTCTT+GGG 0.427598 1.1:+3520435 MS.gene24397:CDS
AAATATATTCATACGCTCAT+TGG 0.428277 1.1:-3518646 None:intergenic
ATCTTGGGGTCATGTCAATT+GGG 0.431936 1.1:+3520156 MS.gene24397:CDS
CATAAGATACTGGTCTTGTC+AGG 0.432544 1.1:+3519948 MS.gene24397:CDS
TAAAGGAACCTTACCGAGAA+AGG 0.434619 1.1:-3520669 None:intergenic
AGCTAACGCAAATGCCAGCT+GGG 0.447107 1.1:-3520003 None:intergenic
GCAGAATCAGACTGAGGACC+TGG 0.452269 1.1:-3518763 None:intergenic
CTCCATATAACAGCTTCGTC+TGG 0.454307 1.1:-3520194 None:intergenic
CATAAACTTGAGATTTGAGA+TGG 0.455458 1.1:-3520489 None:intergenic
GATTTGAGATGGGCTGGAAC+AGG 0.455615 1.1:-3520478 None:intergenic
AGTGAAAGTTCTTGGGGTTG+TGG 0.458548 1.1:+3520442 MS.gene24397:CDS
CGTCTACATTAGCAGCATCT+AGG 0.458881 1.1:-3520340 None:intergenic
ACTTGAGATTTGAGATGGGC+TGG 0.462502 1.1:-3520484 None:intergenic
CTTTGCAAGGCAGCTGAAGA+AGG 0.475604 1.1:+3520701 MS.gene24397:CDS
GGCGGTACCCTTTCTCGGTA+AGG 0.476321 1.1:+3520661 MS.gene24397:CDS
GAGATGGCGGTACCCTTTCT+CGG 0.483462 1.1:+3520656 MS.gene24397:CDS
TGGTGAGATGAAAGATGTTA+CGG 0.483466 1.1:+3520526 MS.gene24397:CDS
GGTCCTCAGTCTGATTCTGC+TGG 0.484126 1.1:+3518766 MS.gene24397:CDS
ATGTGTTCATCTGAGGTTCC+AGG 0.485714 1.1:-3520302 None:intergenic
GGCATTTGCGTTAGCTGCAA+GGG 0.486589 1.1:+3520010 MS.gene24397:CDS
GAGACCAACCAAGGTTGCTC+TGG 0.487893 1.1:-3520115 None:intergenic
CTGTCAATGACGGCAAGTAA+TGG 0.494728 1.1:+3520809 MS.gene24397:CDS
TTGCAAAGCTGTGGATCTAA+AGG 0.505094 1.1:-3520686 None:intergenic
ATACTGGTCTTGTCAGGAAA+GGG 0.511385 1.1:+3519954 MS.gene24397:CDS
TCAGCTGCCTTGCAAAGCTG+TGG 0.521436 1.1:-3520695 None:intergenic
ATACGCTCATTGGCATCCTC+AGG 0.521656 1.1:-3518636 None:intergenic
TGGCATTTGCGTTAGCTGCA+AGG 0.531152 1.1:+3520009 MS.gene24397:CDS
CCAAGCATCCCAAAGATGCT+TGG 0.531277 1.1:+3520071 MS.gene24397:CDS
GATAAGCTGATGGAAACTAG+TGG 0.534659 1.1:+3520785 MS.gene24397:CDS
AGATTAGACTCAACATAGAC+AGG 0.537946 1.1:-3520137 None:intergenic
AAAGGAACCTTACCGAGAAA+GGG 0.538294 1.1:-3520668 None:intergenic
GAGATACACCAGAGCAACCT+TGG 0.541471 1.1:+3520107 MS.gene24397:CDS
GATACTGGTCTTGTCAGGAA+AGG 0.542244 1.1:+3519953 MS.gene24397:CDS
TTGTCAGGAAAGGGAGGTGT+TGG 0.547516 1.1:+3519963 MS.gene24397:CDS
AGGTATATCTCCGTTCTCCA+TGG 0.548279 1.1:-3518616 None:intergenic
TACACCAGAGCAACCTTGGT+TGG 0.551299 1.1:+3520111 MS.gene24397:CDS
ATAACAGCTTCGTCTGGATG+AGG 0.554608 1.1:-3520188 None:intergenic
AATTGAAATGTGTTCATCTG+AGG 0.559191 1.1:-3520309 None:intergenic
ATAAACTTGAGATTTGAGAT+GGG 0.559421 1.1:-3520488 None:intergenic
AAAGATAATAGATAAGCTGA+TGG 0.562227 1.1:+3520775 MS.gene24397:CDS
GGTTGCCATTGCTGAAAGAA+TGG 0.567541 1.1:+3519914 MS.gene24397:CDS
AGTGGCCATTCTTTCAGCAA+TGG 0.570251 1.1:-3519919 None:intergenic
ACTATCAAATACTTCACTGC+AGG 0.571986 1.1:-3520603 None:intergenic
CTATGTTGAGTCTAATCTTG+GGG 0.574536 1.1:+3520142 MS.gene24397:CDS
AACTAGTGGGCTGTCAATGA+CGG 0.579345 1.1:+3520799 MS.gene24397:CDS
GTGGCATTTACAGATTGCCC+AGG 0.582123 1.1:+3518745 MS.gene24397:intron
GACGAAGCTGTTATATGGAG+AGG 0.584494 1.1:+3520197 MS.gene24397:CDS
AGAAGAGCTTCCATGGAGAA+CGG 0.601117 1.1:+3518606 None:intergenic
ATAAGCTGATGGAAACTAGT+GGG 0.602164 1.1:+3520786 MS.gene24397:CDS
TTTAGATCCACAGCTTTGCA+AGG 0.603851 1.1:+3520688 MS.gene24397:CDS
GTTGAAGATGTGTAACGAGA+TGG 0.614173 1.1:+3520640 MS.gene24397:CDS
CAGAATCAGACTGAGGACCT+GGG 0.614924 1.1:-3518762 None:intergenic
AGTCGGAGTGAAAGTTCTTG+GGG 0.628178 1.1:+3520436 MS.gene24397:CDS
AAGAGAGACTTGTTGAGGAG+TGG 0.628280 1.1:-3520378 None:intergenic
AGATGAAAGATGTTACGGAG+TGG 0.628653 1.1:+3520531 MS.gene24397:CDS
CTAGATGCTGCTAATGTAGA+CGG 0.629983 1.1:+3520341 MS.gene24397:CDS
CTGGTCTTGTCAGGAAAGGG+AGG 0.640582 1.1:+3519957 MS.gene24397:CDS
GAAGTATTTGATAGTAGCCG+TGG 0.649921 1.1:+3520611 MS.gene24397:CDS
TCAATAAGAGAGACTTGTTG+AGG 0.650660 1.1:-3520383 None:intergenic
GTATTTGATAGTAGCCGTGG+TGG 0.653467 1.1:+3520614 MS.gene24397:CDS
GGGGTTGTGGAGAATATGAG+TGG 0.671351 1.1:+3520455 MS.gene24397:CDS
CTTCTGGACATTGATATGTG+TGG 0.678994 1.1:+3520047 MS.gene24397:CDS
GGAAAATCTGATGCATGTGA+AGG 0.682695 1.1:+3518787 MS.gene24397:CDS
ACATCTTCAACGCTCCACCA+CGG 0.690721 1.1:-3520628 None:intergenic
TTTCCAGCAGAATCAGACTG+AGG 0.699719 1.1:-3518769 None:intergenic
CATAGACAGGAGACCAACCA+AGG 0.702138 1.1:-3520124 None:intergenic
GAAGATGTGTAACGAGATGG+CGG 0.710160 1.1:+3520643 MS.gene24397:CDS
GGAGAACGGAGATATACCTG+AGG 0.730578 1.1:+3518620 MS.gene24397:CDS
CAGTATCTTATGTTTCACAG+TGG 0.751734 1.1:-3519937 None:intergenic
TGTTCATCTGAGGTTCCAGG+CGG 0.754863 1.1:-3520299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATAATATTTTTTCTTAA+CGG + chr1.1:3519715-3519734 MS.gene24397:intron 10.0%
!!! AGTTTTTAAAAGATGTTTAT+TGG + chr1.1:3520246-3520265 MS.gene24397:CDS 15.0%
!!! GTTTTTAAAAGATGTTTATT+GGG + chr1.1:3520247-3520266 MS.gene24397:CDS 15.0%
!!! TTATTTTAATAAACTCTACA+GGG - chr1.1:3519069-3519088 None:intergenic 15.0%
!!! TTTTTAAAAGATGTTTATTG+GGG + chr1.1:3520248-3520267 MS.gene24397:CDS 15.0%
!! ATATTTATAATCTGTTTCAG+AGG - chr1.1:3519647-3519666 None:intergenic 20.0%
!! CTGTAGAGTTTATTAAAATA+AGG + chr1.1:3519068-3519087 MS.gene24397:intron 20.0%
!! TGAACAAGCTTATATAAATA+AGG - chr1.1:3519207-3519226 None:intergenic 20.0%
!! TTTATGAAGATTACAGATAA+TGG + chr1.1:3520506-3520525 MS.gene24397:CDS 20.0%
!!! AACATAAAAGCATAAGATAA+AGG - chr1.1:3518874-3518893 None:intergenic 20.0%
!!! ATGCTGATTAAATATTAAGT+TGG - chr1.1:3519618-3519637 None:intergenic 20.0%
!!! ATTAATCTTTTCATTCAAAC+AGG - chr1.1:3518932-3518951 None:intergenic 20.0%
!!! CGGATAATTTCTTAATTTTA+TGG + chr1.1:3519802-3519821 MS.gene24397:intron 20.0%
!!! CTTATTTTAATAAACTCTAC+AGG - chr1.1:3519070-3519089 None:intergenic 20.0%
!!! TATTTTTTCTTAACGGAAAT+TGG + chr1.1:3519722-3519741 MS.gene24397:intron 20.0%
!!! TTAATCTTTTCATTCAAACA+GGG - chr1.1:3518931-3518950 None:intergenic 20.0%
! AAAGATAATAGATAAGCTGA+TGG + chr1.1:3520775-3520794 MS.gene24397:CDS 25.0%
! AAATATATTCATACGCTCAT+TGG - chr1.1:3518649-3518668 None:intergenic 25.0%
! AAATATGACATCAAGAAAGT+AGG - chr1.1:3519756-3519775 None:intergenic 25.0%
! ACCATCAACTACTTATATTT+AGG + chr1.1:3518905-3518924 MS.gene24397:intron 25.0%
! ATCATTCTCATTGCTTATTT+GGG + chr1.1:3519329-3519348 MS.gene24397:intron 25.0%
! ATTTGTTCAATTTGTGAAGT+TGG + chr1.1:3519543-3519562 MS.gene24397:intron 25.0%
! CAGATTATAAATATTCTCTC+TGG + chr1.1:3519653-3519672 MS.gene24397:intron 25.0%
! TATAGGGTTATTAATTCCTT+GGG + chr1.1:3519488-3519507 MS.gene24397:intron 25.0%
! TGAAACAATGGCAAAATAAA+AGG - chr1.1:3519681-3519700 None:intergenic 25.0%
! TTATAGGGTTATTAATTCCT+TGG + chr1.1:3519487-3519506 MS.gene24397:intron 25.0%
!! AAAATGATACTTTGAGTTCT+AGG + chr1.1:3519227-3519246 MS.gene24397:intron 25.0%
!! ATAAAAGCATAAGATAAAGG+CGG - chr1.1:3518871-3518890 None:intergenic 25.0%
!! ATAAACTTGAGATTTGAGAT+GGG - chr1.1:3520491-3520510 None:intergenic 25.0%
!! TCTATTATCTTTTGTAATGC+TGG - chr1.1:3520767-3520786 None:intergenic 25.0%
!! TTTTCATTGTTCTTTTGCAT+TGG + chr1.1:3519878-3519897 MS.gene24397:intron 25.0%
!!! TATAAGTAGTTGATGGTTAT+TGG - chr1.1:3518902-3518921 None:intergenic 25.0%
!!! TATTGTTTGGTCTTGTTATA+GGG + chr1.1:3519472-3519491 MS.gene24397:intron 25.0%
!!! TGCTTAGTTTGTTTATTGTT+TGG + chr1.1:3519459-3519478 MS.gene24397:intron 25.0%
!!! TTATTGTTTGGTCTTGTTAT+AGG + chr1.1:3519471-3519490 MS.gene24397:intron 25.0%
!!! TTCTTGTGTTTTTTGTATTG+TGG + chr1.1:3518726-3518745 MS.gene24397:intron 25.0%
!!! TTTGAGCATTTTTTTAACCT+TGG + chr1.1:3519263-3519282 MS.gene24397:intron 25.0%
AATTGAAATGTGTTCATCTG+AGG - chr1.1:3520312-3520331 None:intergenic 30.0%
ACCAAAATGCTTAAACATGA+AGG - chr1.1:3519854-3519873 None:intergenic 30.0%
CAATTAATCGTTTACCATGT+CGG + chr1.1:3518958-3518977 MS.gene24397:intron 30.0%
CATAAACTTGAGATTTGAGA+TGG - chr1.1:3520492-3520511 None:intergenic 30.0%
CATCATTCTCATTGCTTATT+TGG + chr1.1:3519328-3519347 MS.gene24397:intron 30.0%
GATAAGCTTAAATAAACCAG+TGG + chr1.1:3519173-3519192 MS.gene24397:intron 30.0%
GCCTAAATATAAGTAGTTGA+TGG - chr1.1:3518909-3518928 None:intergenic 30.0%
GCGATTAAATTCAACATTTC+AGG - chr1.1:3520584-3520603 None:intergenic 30.0%
GTTCATTTCATAGTTGTCAA+AGG - chr1.1:3519573-3519592 None:intergenic 30.0%
TACAGGGTAACTTACAAAAA+CGG - chr1.1:3519053-3519072 None:intergenic 30.0%
TATCTAATACATAAGCACCA+AGG - chr1.1:3519283-3519302 None:intergenic 30.0%
TCTATGTTGAGTCTAATCTT+GGG + chr1.1:3520141-3520160 MS.gene24397:CDS 30.0%
TGCCATTGTTTCAAAGTTAA+TGG + chr1.1:3519688-3519707 MS.gene24397:intron 30.0%
!! ATACTTTGAGTTCTAGGATT+AGG + chr1.1:3519233-3519252 MS.gene24397:intron 30.0%
!! CACCATTAACTTTGAAACAA+TGG - chr1.1:3519693-3519712 None:intergenic 30.0%
!! TACTTTGAGTTCTAGGATTA+GGG + chr1.1:3519234-3519253 MS.gene24397:intron 30.0%
!! TATGACAATTGAGCTGTTTT+CGG + chr1.1:3519782-3519801 MS.gene24397:intron 30.0%
!!! CGTATGACATTTTTAAAGTC+AGG + chr1.1:3519406-3519425 MS.gene24397:intron 30.0%
!!! GTGATTTTTTGCAAGAAAGT+CGG + chr1.1:3520419-3520438 MS.gene24397:CDS 30.0%
AACACAAGAATCAAAGTCAG+TGG - chr1.1:3518716-3518735 None:intergenic 35.0%
AACTTACGACATATCTACAC+AGG - chr1.1:3519109-3519128 None:intergenic 35.0%
ACTATCAAATACTTCACTGC+AGG - chr1.1:3520606-3520625 None:intergenic 35.0%
AGATTAGACTCAACATAGAC+AGG - chr1.1:3520140-3520159 None:intergenic 35.0%
ATAAGCTGATGGAAACTAGT+GGG + chr1.1:3520786-3520805 MS.gene24397:CDS 35.0%
ATCAGCTCTTTCATAGTTCA+TGG + chr1.1:3519377-3519396 MS.gene24397:intron 35.0%
ATTGAATGATGTCCAACACA+TGG - chr1.1:3519595-3519614 None:intergenic 35.0%
CACTGTGAAACATAAGATAC+TGG + chr1.1:3519938-3519957 MS.gene24397:CDS 35.0%
CAGTATCTTATGTTTCACAG+TGG - chr1.1:3519940-3519959 None:intergenic 35.0%
CTATGAAATGAACCATGTGT+TGG + chr1.1:3519580-3519599 MS.gene24397:intron 35.0%
CTATGTTGAGTCTAATCTTG+GGG + chr1.1:3520142-3520161 MS.gene24397:CDS 35.0%
GTCTATGTTGAGTCTAATCT+TGG + chr1.1:3520140-3520159 MS.gene24397:CDS 35.0%
TGGTGAGATGAAAGATGTTA+CGG + chr1.1:3520526-3520545 MS.gene24397:CDS 35.0%
TTGTAGTGTGATTTCTTTCC+AGG + chr1.1:3519303-3519322 MS.gene24397:intron 35.0%
! AAATAAGGACTTGTTTCCAC+TGG - chr1.1:3519192-3519211 None:intergenic 35.0%
! GCCTTCATGTTTAAGCATTT+TGG + chr1.1:3519850-3519869 MS.gene24397:intron 35.0%
! TAGATCGTGTTTTGCAGATA+AGG + chr1.1:3520724-3520743 MS.gene24397:CDS 35.0%
!! CTTATATATAAGCACCGACA+TGG - chr1.1:3518975-3518994 None:intergenic 35.0%
!! TCAATAAGAGAGACTTGTTG+AGG - chr1.1:3520386-3520405 None:intergenic 35.0%
!! TGGCACAAATTTGCTGATTT+GGG - chr1.1:3518817-3518836 None:intergenic 35.0%
!! TGGGTTGATTAGCAAAGAAA+TGG + chr1.1:3519348-3519367 MS.gene24397:intron 35.0%
!!! GTGGGTATAGTTTTGTGTAA+AGG + chr1.1:3519520-3519539 MS.gene24397:intron 35.0%
!!! TGCATTGGTTTTTGCAGATA+TGG + chr1.1:3519893-3519912 MS.gene24397:intron 35.0%
AAAGGAACCTTACCGAGAAA+GGG - chr1.1:3520671-3520690 None:intergenic 40.0%
AAAGTCGGAGTGAAAGTTCT+TGG + chr1.1:3520434-3520453 MS.gene24397:CDS 40.0%
AAGTCGGAGTGAAAGTTCTT+GGG + chr1.1:3520435-3520454 MS.gene24397:CDS 40.0%
AATCTTGGGGTCATGTCAAT+TGG + chr1.1:3520155-3520174 MS.gene24397:CDS 40.0%
AGATGAAAGATGTTACGGAG+TGG + chr1.1:3520531-3520550 MS.gene24397:CDS 40.0%
ATCCAGACGAAGCTGTTATA+TGG + chr1.1:3520192-3520211 MS.gene24397:CDS 40.0%
ATCTTGGGGTCATGTCAATT+GGG + chr1.1:3520156-3520175 MS.gene24397:CDS 40.0%
CTAGATGCTGCTAATGTAGA+CGG + chr1.1:3520341-3520360 MS.gene24397:CDS 40.0%
CTTCTGGACATTGATATGTG+TGG + chr1.1:3520047-3520066 MS.gene24397:CDS 40.0%
GATAAGCTGATGGAAACTAG+TGG + chr1.1:3520785-3520804 MS.gene24397:CDS 40.0%
GGAAAATCTGATGCATGTGA+AGG + chr1.1:3518787-3518806 MS.gene24397:CDS 40.0%
GTTGAAGATGTGTAACGAGA+TGG + chr1.1:3520640-3520659 MS.gene24397:CDS 40.0%
TAAAGGAACCTTACCGAGAA+AGG - chr1.1:3520672-3520691 None:intergenic 40.0%
TTGCAAAGCTGTGGATCTAA+AGG - chr1.1:3520689-3520708 None:intergenic 40.0%
TTTAGATCCACAGCTTTGCA+AGG + chr1.1:3520688-3520707 MS.gene24397:CDS 40.0%
! GAAGTATTTGATAGTAGCCG+TGG + chr1.1:3520611-3520630 MS.gene24397:CDS 40.0%
! GTGACTTGTGAAACTGCTTA+TGG - chr1.1:3519136-3519155 None:intergenic 40.0%
!! ATACTGGTCTTGTCAGGAAA+GGG + chr1.1:3519954-3519973 MS.gene24397:CDS 40.0%
!! CATAAGATACTGGTCTTGTC+AGG + chr1.1:3519948-3519967 MS.gene24397:CDS 40.0%
!! GTGGCACAAATTTGCTGATT+TGG - chr1.1:3518818-3518837 None:intergenic 40.0%
!! TTGATAAGCCCATTTTTGCG+TGG - chr1.1:3520224-3520243 None:intergenic 40.0%
!!! GGATTTTCAAGTTGGTCTTC+TGG + chr1.1:3520031-3520050 MS.gene24397:CDS 40.0%
AGCAATGAGAATGATGAGCC+TGG - chr1.1:3519324-3519343 None:intergenic 45.0%
AGTCGGAGTGAAAGTTCTTG+GGG + chr1.1:3520436-3520455 MS.gene24397:CDS 45.0%
AGTGAAAGTTCTTGGGGTTG+TGG + chr1.1:3520442-3520461 MS.gene24397:CDS 45.0%
AGTGGCCATTCTTTCAGCAA+TGG - chr1.1:3519922-3519941 None:intergenic 45.0%
ATAACAGCTTCGTCTGGATG+AGG - chr1.1:3520191-3520210 None:intergenic 45.0%
ATTCCTTGGGCATTTGACAG+TGG + chr1.1:3519501-3519520 MS.gene24397:intron 45.0%
CGTCTACATTAGCAGCATCT+AGG - chr1.1:3520343-3520362 None:intergenic 45.0%
CTCCATATAACAGCTTCGTC+TGG - chr1.1:3520197-3520216 None:intergenic 45.0%
CTGTCAATGACGGCAAGTAA+TGG + chr1.1:3520809-3520828 MS.gene24397:CDS 45.0%
CTTCTAGGCCAAGCATCTTT+GGG - chr1.1:3520082-3520101 None:intergenic 45.0%
GAAGATGTGTAACGAGATGG+CGG + chr1.1:3520643-3520662 MS.gene24397:CDS 45.0%
GACGAAGCTGTTATATGGAG+AGG + chr1.1:3520197-3520216 MS.gene24397:CDS 45.0%
GGTGTATCTCTTGACCTTCT+AGG - chr1.1:3520097-3520116 None:intergenic 45.0%
GGTTGCCATTGCTGAAAGAA+TGG + chr1.1:3519914-3519933 MS.gene24397:CDS 45.0%
TTCCTTGGGCATTTGACAGT+GGG + chr1.1:3519502-3519521 MS.gene24397:intron 45.0%
TTTCCAGCAGAATCAGACTG+AGG - chr1.1:3518772-3518791 None:intergenic 45.0%
! ACTTGAGATTTGAGATGGGC+TGG - chr1.1:3520487-3520506 None:intergenic 45.0%
! ATGTGTTCATCTGAGGTTCC+AGG - chr1.1:3520305-3520324 None:intergenic 45.0%
! GTATTTGATAGTAGCCGTGG+TGG + chr1.1:3520614-3520633 MS.gene24397:CDS 45.0%
!! AACTAGTGGGCTGTCAATGA+CGG + chr1.1:3520799-3520818 MS.gene24397:CDS 45.0%
!! AAGAGAGACTTGTTGAGGAG+TGG - chr1.1:3520381-3520400 None:intergenic 45.0%
!! GATACTGGTCTTGTCAGGAA+AGG + chr1.1:3519953-3519972 MS.gene24397:CDS 45.0%
!!! GCTGCAAGGGATTTTCAAGT+TGG + chr1.1:3520023-3520042 MS.gene24397:CDS 45.0%
AACCAGGGTCAGGTCCTTTA+GGG - chr1.1:3518844-3518863 None:intergenic 50.0%
ACATCTTCAACGCTCCACCA+CGG - chr1.1:3520631-3520650 None:intergenic 50.0%
AGATAAAGGCGGAACCAACC+AGG - chr1.1:3518860-3518879 None:intergenic 50.0%
AGCTAACGCAAATGCCAGCT+GGG - chr1.1:3520006-3520025 None:intergenic 50.0%
ATACGCTCATTGGCATCCTC+AGG - chr1.1:3518639-3518658 None:intergenic 50.0%
CAGAATCAGACTGAGGACCT+GGG - chr1.1:3518765-3518784 None:intergenic 50.0%
CATAGACAGGAGACCAACCA+AGG - chr1.1:3520127-3520146 None:intergenic 50.0%
CCAAAGATGCTTGGCCTAGA+AGG + chr1.1:3520080-3520099 MS.gene24397:CDS 50.0%
CCAAGCATCCCAAAGATGCT+TGG + chr1.1:3520071-3520090 MS.gene24397:CDS 50.0%
CCTTCTAGGCCAAGCATCTT+TGG - chr1.1:3520083-3520102 None:intergenic 50.0%
CTAATTGTTGATGCTCCGCC+TGG + chr1.1:3520284-3520303 MS.gene24397:CDS 50.0%
CTTTGCAAGGCAGCTGAAGA+AGG + chr1.1:3520701-3520720 MS.gene24397:CDS 50.0%
GAGATACACCAGAGCAACCT+TGG + chr1.1:3520107-3520126 MS.gene24397:CDS 50.0%
GATAAAGGCGGAACCAACCA+GGG - chr1.1:3518859-3518878 None:intergenic 50.0%
GGAGAACGGAGATATACCTG+AGG + chr1.1:3518620-3518639 MS.gene24397:CDS 50.0%
GGAGAGGTCCACGCAAAAAT+GGG + chr1.1:3520213-3520232 MS.gene24397:CDS 50.0%
GGCATTTGCGTTAGCTGCAA+GGG + chr1.1:3520010-3520029 MS.gene24397:CDS 50.0%
GGGGTTGTGGAGAATATGAG+TGG + chr1.1:3520455-3520474 MS.gene24397:CDS 50.0%
GTGGCATTTACAGATTGCCC+AGG + chr1.1:3518745-3518764 MS.gene24397:intron 50.0%
TACACCAGAGCAACCTTGGT+TGG + chr1.1:3520111-3520130 MS.gene24397:CDS 50.0%
TACCCACTGTCAAATGCCCA+AGG - chr1.1:3519507-3519526 None:intergenic 50.0%
TGGAGAGGTCCACGCAAAAA+TGG + chr1.1:3520212-3520231 MS.gene24397:CDS 50.0%
TGGCATTTGCGTTAGCTGCA+AGG + chr1.1:3520009-3520028 MS.gene24397:CDS 50.0%
! ATTTGTGCCACTGCCCCTAA+AGG + chr1.1:3518827-3518846 MS.gene24397:intron 50.0%
! TGTTCATCTGAGGTTCCAGG+CGG - chr1.1:3520302-3520321 None:intergenic 50.0%
! TTGTCAGGAAAGGGAGGTGT+TGG + chr1.1:3519963-3519982 MS.gene24397:CDS 50.0%
!! CCAAGCATCTTTGGGATGCT+TGG - chr1.1:3520074-3520093 None:intergenic 50.0%
!! GATTTGAGATGGGCTGGAAC+AGG - chr1.1:3520481-3520500 None:intergenic 50.0%
ACCAGGGTCAGGTCCTTTAG+GGG - chr1.1:3518843-3518862 None:intergenic 55.0%
CAACCAGGGTCAGGTCCTTT+AGG - chr1.1:3518845-3518864 None:intergenic 55.0%
CAGCTAACGCAAATGCCAGC+TGG - chr1.1:3520007-3520026 None:intergenic 55.0%
CTAAAGGACCTGACCCTGGT+TGG + chr1.1:3518843-3518862 MS.gene24397:intron 55.0%
GAGACCAACCAAGGTTGCTC+TGG - chr1.1:3520118-3520137 None:intergenic 55.0%
GCAGAATCAGACTGAGGACC+TGG - chr1.1:3518766-3518785 None:intergenic 55.0%
GGTCCTCAGTCTGATTCTGC+TGG + chr1.1:3518766-3518785 MS.gene24397:CDS 55.0%
TCAGCTGCCTTGCAAAGCTG+TGG - chr1.1:3520698-3520717 None:intergenic 55.0%
! GAGATGGCGGTACCCTTTCT+CGG + chr1.1:3520656-3520675 MS.gene24397:CDS 55.0%
! GAGCACATTTTCTGCCCAGC+TGG + chr1.1:3519989-3520008 MS.gene24397:CDS 55.0%
!! CTGGTCTTGTCAGGAAAGGG+AGG + chr1.1:3519957-3519976 MS.gene24397:CDS 55.0%
GGCGGTACCCTTTCTCGGTA+AGG + chr1.1:3520661-3520680 MS.gene24397:CDS 60.0%
! GTCAGGTCCTTTAGGGGCAG+TGG - chr1.1:3518837-3518856 None:intergenic 60.0%
AGGCGGAACCAACCAGGGTC+AGG - chr1.1:3518854-3518873 None:intergenic 65.0%
GCCCCTAAAGGACCTGACCC+TGG + chr1.1:3518839-3518858 MS.gene24397:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 3518618 3520838 3518618 ID=MS.gene24397
chr1.1 mRNA 3518618 3520838 3518618 ID=MS.gene24397.t1;Parent=MS.gene24397
chr1.1 exon 3518618 3518654 3518618 ID=MS.gene24397.t1.exon1;Parent=MS.gene24397.t1
chr1.1 CDS 3518618 3518654 3518618 ID=cds.MS.gene24397.t1;Parent=MS.gene24397.t1
chr1.1 exon 3518758 3518808 3518758 ID=MS.gene24397.t1.exon2;Parent=MS.gene24397.t1
chr1.1 CDS 3518758 3518808 3518758 ID=cds.MS.gene24397.t1;Parent=MS.gene24397.t1
chr1.1 exon 3519910 3520838 3519910 ID=MS.gene24397.t1.exon3;Parent=MS.gene24397.t1
chr1.1 CDS 3519910 3520838 3519910 ID=cds.MS.gene24397.t1;Parent=MS.gene24397.t1
Gene Sequence

>MS.gene24397

ATGGAGAACGGAGATATACCTGAGGATGCCAATGAGCGTATGAATATATTTATTAATTATTATTATGTGTTTGAATTTTGCTGTTTCTATATATTCCACTGACTTTGATTCTTGTGTTTTTTGTATTGTGGCATTTACAGATTGCCCAGGTCCTCAGTCTGATTCTGCTGGAAAATCTGATGCATGTGAAGGTTTGCCCAAATCAGCAAATTTGTGCCACTGCCCCTAAAGGACCTGACCCTGGTTGGTTCCGCCTTTATCTTATGCTTTTATGTTTATTTCCAATAACCATCAACTACTTATATTTAGGCCCTGTTTGAATGAAAAGATTAATTAAACGCAATTAATCGTTTACCATGTCGGTGCTTATATATAAGCTATTTTGATAACAGATGATAAAATAAATCAAAGTGTTTTCATATAAACTATGAGCCGTTTTTGTAAGTTACCCTGTAGAGTTTATTAAAATAAGGTGAAAACAGTGTGTGCCTGTGTAGATATGTCGTAAGTTGTGTCCATAAGCAGTTTCACAAGTCACACATGCTTATGTTAGTAGATAAGCTTAAATAAACCAGTGGAAACAAGTCCTTATTTATATAAGCTTGTTCAAAAATGATACTTTGAGTTCTAGGATTAGGGACTGTTTTTGAGCATTTTTTTAACCTTGGTGCTTATGTATTAGATATTGTAGTGTGATTTCTTTCCAGGCTCATCATTCTCATTGCTTATTTGGGTTGATTAGCAAAGAAATGGAATAAAATCAGCTCTTTCATAGTTCATGGCGTTGTCGTATGACATTTTTAAAGTCAGGACTAGTGAAACATTTTATGTGATATTGTTTTGCTTAGTTTGTTTATTGTTTGGTCTTGTTATAGGGTTATTAATTCCTTGGGCATTTGACAGTGGGTATAGTTTTGTGTAAAGGATTTGTTCAATTTGTGAAGTTGGAGATCCTTTGACAACTATGAAATGAACCATGTGTTGGACATCATTCAATCCAACTTAATATTTAATCAGCATGTTTTTCCTCTGAAACAGATTATAAATATTCTCTCTGGATCCTTTTATTTTGCCATTGTTTCAAAGTTAATGGTGATAACATAATATTTTTTCTTAACGGAAATTGGTAGAAATACCTACTTTCTTGATGTCATATTTTTTCTGTATGACAATTGAGCTGTTTTCGGATAATTTCTTAATTTTATGGAATTGAGAATGTTGAGCAACAAATTGCCTTCATGTTTAAGCATTTTGGTGACATTTTCATTGTTCTTTTGCATTGGTTTTTGCAGATATGGTTGCCATTGCTGAAAGAATGGCCACTGTGAAACATAAGATACTGGTCTTGTCAGGAAAGGGAGGTGTTGGCAAGAGCACATTTTCTGCCCAGCTGGCATTTGCGTTAGCTGCAAGGGATTTTCAAGTTGGTCTTCTGGACATTGATATGTGTGGTCCAAGCATCCCAAAGATGCTTGGCCTAGAAGGTCAAGAGATACACCAGAGCAACCTTGGTTGGTCTCCTGTCTATGTTGAGTCTAATCTTGGGGTCATGTCAATTGGGTTCATGCTTCCTCATCCAGACGAAGCTGTTATATGGAGAGGTCCACGCAAAAATGGGCTTATCAAGCAGTTTTTAAAAGATGTTTATTGGGGTGAACTTGATTTTCTAATTGTTGATGCTCCGCCTGGAACCTCAGATGAACACATTTCAATTGTTCAATGCCTAGATGCTGCTAATGTAGACGGTGCAATCATAGTTACCACTCCTCAACAAGTCTCTCTTATTGATGTGAAAAAAGAAGTGATTTTTTGCAAGAAAGTCGGAGTGAAAGTTCTTGGGGTTGTGGAGAATATGAGTGGCCTGTTCCAGCCCATCTCAAATCTCAAGTTTATGAAGATTACAGATAATGGTGAGATGAAAGATGTTACGGAGTGGATATCAGAATACATGAAAGAAAAAGCGCCTGAAATGTTGAATTTAATCGCCTGCAGTGAAGTATTTGATAGTAGCCGTGGTGGAGCGTTGAAGATGTGTAACGAGATGGCGGTACCCTTTCTCGGTAAGGTTCCTTTAGATCCACAGCTTTGCAAGGCAGCTGAAGAAGGTAGATCGTGTTTTGCAGATAAGGATTGTGTCGTGAGCGTTCCAGCATTACAAAAGATAATAGATAAGCTGATGGAAACTAGTGGGCTGTCAATGACGGCAAGTAATGGAGTGTAG
Protein sequence

>MS.gene24397.t1

MENGDIPEDANEHCPGPQSDSAGKSDACEDMVAIAERMATVKHKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLDIDMCGPSIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPHPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLIVDAPPGTSDEHISIVQCLDAANVDGAIIVTTPQQVSLIDVKKEVIFCKKVGVKVLGVVENMSGLFQPISNLKFMKITDNGEMKDVTEWISEYMKEKAPEMLNLIACSEVFDSSRGGALKMCNEMAVPFLGKVPLDPQLCKAAEEGRSCFADKDCVVSVPALQKIIDKLMETSGLSMTASNGV