AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24419

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24419.t1 MTR_1g019280 97.428 622 14 1 1 622 1 620 0.0 1245
MS.gene24419.t1 MTR_1g019280 96.377 552 17 2 72 622 9 558 0.0 1092
MS.gene24419.t1 MTR_5g017290 39.540 435 195 17 222 621 2 403 5.69e-58 200
MS.gene24419.t1 MTR_8g023130 28.216 241 144 5 405 619 222 459 1.71e-18 89.0
MS.gene24419.t1 MTR_8g079482 24.747 396 244 12 264 619 54 435 2.53e-15 79.0
MS.gene24419.t1 MTR_8g079482 24.747 396 244 12 264 619 144 525 3.66e-15 79.0
MS.gene24419.t1 MTR_8g080180 38.235 102 63 0 511 612 247 348 1.73e-14 75.9
MS.gene24419.t1 MTR_8g031370 33.628 113 74 1 506 617 88 200 4.13e-13 68.9
MS.gene24419.t1 MTR_7g076730 31.731 104 70 1 515 617 30 133 1.51e-11 62.8
MS.gene24419.t1 MTR_1g052560 33.333 117 78 0 501 617 157 273 1.96e-11 65.5
MS.gene24419.t1 MTR_7g091990 37.113 97 61 0 501 597 163 259 2.15e-11 65.5
MS.gene24419.t1 MTR_1g100647 35.577 104 66 1 515 617 106 209 8.81e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24419.t1 AT1G45207 49.498 598 224 22 34 622 21 549 1.47e-148 441
MS.gene24419.t1 AT1G45207 49.007 604 224 24 34 622 21 555 1.19e-144 431
MS.gene24419.t1 AT4G36970 40.515 427 189 16 232 617 12 414 4.28e-44 163
MS.gene24419.t1 AT2G02170 28.302 371 212 11 284 622 11 359 8.13e-20 92.0
MS.gene24419.t1 AT2G02170 28.302 371 212 11 284 622 11 359 8.13e-20 92.0
MS.gene24419.t1 AT2G02170 28.302 371 212 11 284 622 136 484 1.15e-19 92.8
MS.gene24419.t1 AT2G02170 28.302 371 212 11 284 622 136 484 1.15e-19 92.8
MS.gene24419.t1 AT2G02170 28.302 371 212 11 284 622 136 484 1.15e-19 92.8
MS.gene24419.t1 AT2G02170 28.302 371 212 11 284 622 136 484 1.15e-19 92.8
MS.gene24419.t1 AT1G30320 26.064 376 202 14 281 622 175 508 8.62e-18 87.4
MS.gene24419.t1 AT1G67590 33.168 202 119 5 417 612 141 332 1.11e-15 79.3
MS.gene24419.t1 AT1G53860 23.733 375 196 17 281 620 119 438 4.27e-13 72.4
MS.gene24419.t1 AT1G53860 26.971 241 137 11 407 619 140 369 4.92e-13 71.6
MS.gene24419.t1 AT3G61260 34.615 104 67 1 515 617 109 212 1.26e-11 65.1
MS.gene24419.t1 AT3G57540 32.110 109 74 0 501 609 177 285 2.10e-11 65.9
MS.gene24419.t1 AT5G23750 31.897 116 75 2 497 608 76 191 5.12e-11 62.8
MS.gene24419.t1 AT5G23750 31.897 116 75 2 497 608 77 192 7.54e-11 62.4
MS.gene24419.t1 AT2G41870 29.661 118 83 0 501 618 155 272 8.57e-11 63.5

Find 180 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGAGATTTCGGAGTTTA+AGG 0.138254 1.1:-3785663 None:intergenic
TTGTTAACAATGCGTGATTT+AGG 0.191934 1.1:+3785440 None:intergenic
GGAGAACGTTGCCGTCTAAA+TGG 0.214560 1.1:+3786629 MS.gene24419:CDS
GAGTATCTCTTTCTCTAAAA+TGG 0.225892 1.1:+3787670 MS.gene24419:CDS
TTGTTTGTCCCAGGGCTAAA+AGG 0.256081 1.1:+3788344 MS.gene24419:intron
CTTTCTCTAAAATGGATATC+AGG 0.259197 1.1:+3787678 MS.gene24419:CDS
AGCTACCCTCTGGGCTCATC+TGG 0.267123 1.1:-3787574 None:intergenic
ACTGAAATTCGCTCAGAAAA+AGG 0.296875 1.1:+3788999 MS.gene24419:CDS
GAATAGGGCCTTGTGTTTCT+TGG 0.297375 1.1:-3787741 None:intergenic
CTCACAAGGTTATGTCATTT+CGG 0.298149 1.1:+3789079 MS.gene24419:CDS
GAATGCTGTAGAAGCTTAAA+AGG 0.304020 1.1:-3789148 None:intergenic
AATGCTAATGCAACTGGAAT+TGG 0.310682 1.1:+3786373 MS.gene24419:CDS
TGTTAACAATGCGTGATTTA+GGG 0.325485 1.1:+3785441 None:intergenic
CATAACCTTGTGAGAAGTTC+TGG 0.325768 1.1:-3789070 None:intergenic
CTGAACCTCTACCAGTGAAT+AGG 0.332401 1.1:-3787757 None:intergenic
TCGGGAACGGGTACAGTGTC+GGG 0.345633 1.1:+3786457 MS.gene24419:CDS
GTGAAGTACCAGTGAGATTT+CGG 0.355827 1.1:-3785672 None:intergenic
GCATTAACAGCAGCAGAAAA+AGG 0.359752 1.1:-3786844 None:intergenic
CACCATTACCAACTTGCTTC+CGG 0.360198 1.1:-3786582 None:intergenic
TGACGATAATTCGGAGTTCC+AGG 0.366291 1.1:-3786499 None:intergenic
AGAGAAAGAAGTCCTCATAT+TGG 0.380866 1.1:-3787609 None:intergenic
GATGGGTTTACAAATAGTTC+TGG 0.388906 1.1:+3786874 MS.gene24419:CDS
GGAGAAGTTTGATGCTTTCA+AGG 0.390085 1.1:+3787502 MS.gene24419:CDS
TCTGGTGGCAATGGTGGTGG+AGG 0.393951 1.1:+3786892 MS.gene24419:CDS
TATGGTTCAGACTAGGAAAT+CGG 0.396156 1.1:+3786438 MS.gene24419:CDS
CTGAACAATGCTAATGCAAC+TGG 0.402251 1.1:+3786367 MS.gene24419:CDS
CTGCGTTGTGTTTAAGTAAT+GGG 0.406242 1.1:+3786608 MS.gene24419:CDS
GAGAAAGAAGTCCTCATATT+GGG 0.411403 1.1:-3787608 None:intergenic
GCCGCCGGTGACGGTGTTGC+CGG 0.428820 1.1:-3785522 None:intergenic
CCAGCACTCGATCTTCATCT+TGG 0.432083 1.1:+3787810 MS.gene24419:CDS
TTCGGATCCGGATCCGGATC+TGG 0.432532 1.1:-3785857 None:intergenic
GCTGTTAATGCCTCAGCTGA+TGG 0.434402 1.1:+3786856 MS.gene24419:CDS
CCTTGACAATGACGATAATT+CGG 0.435234 1.1:-3786508 None:intergenic
TTTGCTATTTCAGATGAAGT+TGG 0.436926 1.1:+3788936 MS.gene24419:intron
GGTTCTTCCCCTCGATTAGT+TGG 0.437388 1.1:+3786400 MS.gene24419:CDS
GCGATCGACGCTGGCGGAAG+CGG 0.441021 1.1:-3785606 None:intergenic
TGGAGCTATGAAGAAGAGTA+TGG 0.441511 1.1:+3786420 MS.gene24419:CDS
GGTGGTGTTGCAATGCAAAA+AGG 0.444448 1.1:+3786529 MS.gene24419:CDS
TGAACCTCTACCAGTGAATA+GGG 0.445517 1.1:-3787756 None:intergenic
AGAGTGAAGATGACGGAGTC+AGG 0.453482 1.1:-3785557 None:intergenic
TATCAACATCACAGTTCAAA+AGG 0.454031 1.1:+3786078 MS.gene24419:intron
TGTTTGTCCCAGGGCTAAAA+GGG 0.458702 1.1:+3788345 MS.gene24419:intron
TGAAGACGGAAATCAACTTT+CGG 0.459392 1.1:+3786120 MS.gene24419:CDS
TATTCGTTGTATTCGCCTGC+AGG 0.459546 1.1:+3786781 MS.gene24419:CDS
CTGTTAATGCCTCAGCTGAT+GGG 0.464443 1.1:+3786857 MS.gene24419:CDS
TCTGCAAATCTGTGACGGGC+AGG 0.464852 1.1:-3787649 None:intergenic
CAGCACTCGATCTTCATCTT+GGG 0.467973 1.1:+3787811 MS.gene24419:CDS
AAACACAAGGCCCTATTCAC+TGG 0.468324 1.1:+3787746 MS.gene24419:CDS
ACATGGATGCTCTCAGATGC+AGG 0.472253 1.1:+3786960 MS.gene24419:CDS
TTTCGGAGAGCCGGCCAGAT+GGG 0.473847 1.1:+3789096 MS.gene24419:CDS
ACCACCGGCAACACCGTCAC+CGG 0.481138 1.1:+3785518 MS.gene24419:CDS
GAGGAGCATGAGCTACCCTC+TGG 0.483081 1.1:-3787584 None:intergenic
ATGAACTTGCAGCATTTGGC+AGG 0.484576 1.1:+3785794 MS.gene24419:intron
CCAAGATGAAGATCGAGTGC+TGG 0.484979 1.1:-3787810 None:intergenic
ACGGGTACAGTGTCGGGGAC+TGG 0.487817 1.1:+3786463 MS.gene24419:CDS
AATGCAACTGGAATTGGAAC+TGG 0.488888 1.1:+3786379 MS.gene24419:CDS
GAGAACGTTGCCGTCTAAAT+GGG 0.489634 1.1:+3786630 MS.gene24419:CDS
AGCGGACCACTCTTCGACTT+AGG 0.491435 1.1:-3786736 None:intergenic
GGTGTTGCGTGTTCTTGAAC+CGG 0.491640 1.1:-3785498 None:intergenic
ATTTCGGAGAGCCGGCCAGA+TGG 0.493284 1.1:+3789095 MS.gene24419:CDS
TTAGGTCTCCTCAGTGGCTG+TGG 0.494524 1.1:-3786718 None:intergenic
GGCCAGATGGGTTCTTTGAG+TGG 0.494804 1.1:+3789108 MS.gene24419:CDS
GTTTGATGCTTTCAAGGATG+CGG 0.497959 1.1:+3787508 MS.gene24419:CDS
ACTGGTACATTTCCGAGTCC+TGG 0.500376 1.1:+3786481 MS.gene24419:CDS
AGTGGTCCGCTTGGTCCACC+TGG 0.500934 1.1:+3786748 MS.gene24419:CDS
AAGCGGAGGAGAAGAGACTA+AGG 0.501003 1.1:-3785589 None:intergenic
TTTGTTCATAATCTTATCCA+TGG 0.503384 1.1:-3788977 None:intergenic
CGCATGGGAAAATTTGCAAA+AGG 0.505130 1.1:+3788384 MS.gene24419:CDS
CTGGTGGCAATGGTGGTGGA+GGG 0.506953 1.1:+3786893 MS.gene24419:CDS
AGTTCTGGTGGCAATGGTGG+TGG 0.506963 1.1:+3786889 MS.gene24419:CDS
GGCCGGAAGCAAGTTGGTAA+TGG 0.508505 1.1:+3786580 MS.gene24419:CDS
TTCTGGCAACTTGATGAGCC+TGG 0.509969 1.1:-3789053 None:intergenic
ATGTCCCTTCTTGAAACAGC+AGG 0.510044 1.1:-3787545 None:intergenic
AAGCTGGAGTGGTCCAGATC+CGG 0.511012 1.1:+3785844 MS.gene24419:CDS
AATGGATATCAGGGATGTGC+AGG 0.513273 1.1:+3787688 MS.gene24419:CDS
GTTCAGAAAATGTTGACAGC+TGG 0.516670 1.1:+3787774 MS.gene24419:CDS
ACAAATAGTTCTGGTGGCAA+TGG 0.516869 1.1:+3786883 MS.gene24419:CDS
AACCACTCAAAGAACCCATC+TGG 0.516973 1.1:-3789110 None:intergenic
GTTATGTCATTTCGGAGAGC+CGG 0.517925 1.1:+3789087 MS.gene24419:CDS
TTTCTCTAAAATGGATATCA+GGG 0.518025 1.1:+3787679 MS.gene24419:CDS
GCTCGCTCAGTTAGTGTACA+TGG 0.518862 1.1:+3786943 MS.gene24419:CDS
CTTTATTTAATAAGCAAGAT+CGG 0.519759 1.1:+3786323 MS.gene24419:CDS
GAAGGAGCAGCGATCGACGC+TGG 0.522577 1.1:-3785615 None:intergenic
AGTTCTGAGCGAGTTGTAAG+TGG 0.522590 1.1:+3786556 MS.gene24419:CDS
GAGTGGTCCAGATCCGGATC+CGG 0.526471 1.1:+3785850 MS.gene24419:CDS
CAGACTAGGAAATCGGGAAC+GGG 0.526664 1.1:+3786445 MS.gene24419:CDS
CATGCTCCTCTCCCAATATG+AGG 0.528342 1.1:+3787597 MS.gene24419:CDS
ATGGTTCAGACTAGGAAATC+GGG 0.530303 1.1:+3786439 MS.gene24419:CDS
TTTGATGCTTTCAAGGATGC+GGG 0.530327 1.1:+3787509 MS.gene24419:CDS
ATCGACGCTGGCGGAAGCGG+AGG 0.530992 1.1:-3785603 None:intergenic
GCTACCCTCTGGGCTCATCT+GGG 0.532927 1.1:-3787573 None:intergenic
ATCGGGAACGGGTACAGTGT+CGG 0.534075 1.1:+3786456 MS.gene24419:CDS
CTTAAACTCCGAAATCTCAC+TGG 0.541173 1.1:+3785664 MS.gene24419:CDS
TGTATCGCAGCCGCCGGTGA+CGG 0.541960 1.1:-3785531 None:intergenic
GTTCTGAGCGAGTTGTAAGT+GGG 0.543456 1.1:+3786557 MS.gene24419:CDS
TTGTTCAGATCTAACGAAGC+AGG 0.544462 1.1:-3786352 None:intergenic
TTGCAGCATTTGGCAGGTCA+CGG 0.547364 1.1:+3785800 MS.gene24419:intron
TTTCTTGGACCACCTTGTCA+TGG 0.550513 1.1:-3787726 None:intergenic
TCTGTGACGGGCAGGGAAGG+TGG 0.550611 1.1:-3787641 None:intergenic
TATCCCCTGCTGTTTCAAGA+AGG 0.551655 1.1:+3787540 MS.gene24419:CDS
GACGGGCAGGGAAGGTGGAG+TGG 0.556016 1.1:-3787636 None:intergenic
AGAAGCTTAAAAGGCATGAC+AGG 0.558480 1.1:-3789139 None:intergenic
TGAAACAGCAGGGGATACAT+TGG 0.561049 1.1:-3787534 None:intergenic
TCCGCATCTTCCCATTTAGA+CGG 0.561076 1.1:-3786640 None:intergenic
CTGCAAATCTGTGACGGGCA+GGG 0.561186 1.1:-3787648 None:intergenic
ATACTCTGCAAATCTGTGAC+GGG 0.564896 1.1:-3787653 None:intergenic
AAATCTGTGACGGGCAGGGA+AGG 0.566048 1.1:-3787644 None:intergenic
ACTGCGTTGTGTTTAAGTAA+TGG 0.567379 1.1:+3786607 MS.gene24419:CDS
CACACGAACGGATCCTTGCA+TGG 0.568343 1.1:+3786921 MS.gene24419:CDS
GAGTTCAGTTTCAGTCGACC+AGG 0.570124 1.1:+3789035 MS.gene24419:CDS
AGAAGTCCTCATATTGGGAG+AGG 0.571056 1.1:-3787603 None:intergenic
AAAGAAGCGAGCATCTTCCA+TGG 0.572035 1.1:+3788960 MS.gene24419:CDS
TCAGACTAGGAAATCGGGAA+CGG 0.573486 1.1:+3786444 MS.gene24419:CDS
TGCTGTTTCAAGAAGGGACA+TGG 0.573943 1.1:+3787547 MS.gene24419:CDS
AGTGACATTGATTCTGAAGA+CGG 0.574323 1.1:+3786106 MS.gene24419:CDS
TTCATAGCTCCAACTAATCG+AGG 0.574579 1.1:-3786409 None:intergenic
TAATTCGGAGTTCCAGGACT+CGG 0.576781 1.1:-3786493 None:intergenic
GTCGTGAGCATCGGAAGCGA+AGG 0.577090 1.1:-3785633 None:intergenic
TGGATTAAGAATGTCAAGAT+CGG 0.577560 1.1:+3786284 MS.gene24419:intron
GGACCACTCCAGCTTTCACT+CGG 0.578133 1.1:-3785836 None:intergenic
GGAGTCGCGGTCGTGAGCAT+CGG 0.579540 1.1:-3785642 None:intergenic
CATGCAAGGATCCGTTCGTG+TGG 0.580587 1.1:-3786920 None:intergenic
AATGGGAAGATGCGGAGAGG+TGG 0.589464 1.1:+3786647 MS.gene24419:CDS
CCGAATTATCGTCATTGTCA+AGG 0.589710 1.1:+3786508 MS.gene24419:CDS
TCATAGCTCCAACTAATCGA+GGG 0.590491 1.1:-3786408 None:intergenic
TTCACGAACAACGACGCTCG+TGG 0.590666 1.1:+3785465 MS.gene24419:CDS
GATACTCTGCAAATCTGTGA+CGG 0.592988 1.1:-3787654 None:intergenic
AGGAGCATGAGCTACCCTCT+GGG 0.594386 1.1:-3787583 None:intergenic
AGGAAGCCAAAATCACCGCA+TGG 0.595215 1.1:+3788368 MS.gene24419:CDS
ATCCCCTGCTGTTTCAAGAA+GGG 0.596120 1.1:+3787541 MS.gene24419:CDS
GCTCCGAGTGAAAGCTGGAG+TGG 0.598646 1.1:+3785833 MS.gene24419:CDS
AAGGCCCTATTCACTGGTAG+AGG 0.600698 1.1:+3787752 MS.gene24419:CDS
AGGACTTGTATCGCAGCCGC+CGG 0.601139 1.1:-3785537 None:intergenic
ACCGGCAACACCGTCACCGG+CGG 0.601674 1.1:+3785521 MS.gene24419:CDS
GGGTTTACAAATAGTTCTGG+TGG 0.601682 1.1:+3786877 MS.gene24419:CDS
CGCTCGTGGAGGCGTAACAC+CGG 0.602071 1.1:+3785479 MS.gene24419:CDS
GGAAGCCAAAATCACCGCAT+GGG 0.605836 1.1:+3788369 MS.gene24419:CDS
AAGTCGAAGAGTGGTCCGCT+TGG 0.609344 1.1:+3786739 MS.gene24419:CDS
GCAACCCAGATGAGCCCAGA+GGG 0.612368 1.1:+3787569 MS.gene24419:CDS
TGGAGGGCTTCCCACACGAA+CGG 0.615766 1.1:+3786909 MS.gene24419:CDS
AACGAATAATACGCAACACC+AGG 0.618153 1.1:-3786766 None:intergenic
CTAACTGAGCGAGCCATGCA+AGG 0.618650 1.1:-3786934 None:intergenic
AGAAGAGTATGGTTCAGACT+AGG 0.619003 1.1:+3786431 MS.gene24419:CDS
TCTTTCTCTCTAGCACTCAA+AGG 0.621209 1.1:+3786163 MS.gene24419:CDS
TGTCCCTTCTTGAAACAGCA+GGG 0.622908 1.1:-3787544 None:intergenic
CGGGAACGGGTACAGTGTCG+GGG 0.623331 1.1:+3786458 MS.gene24419:CDS
AATAGTTCTGGTGGCAATGG+TGG 0.623434 1.1:+3786886 MS.gene24419:CDS
TTCTGAGCGAGTTGTAAGTG+GGG 0.623568 1.1:+3786558 MS.gene24419:CDS
GCCGTCTAAATGGGAAGATG+CGG 0.624201 1.1:+3786639 MS.gene24419:CDS
GGAGCAGCGATCGACGCTGG+CGG 0.626239 1.1:-3785612 None:intergenic
TCAAGAACACGCAACACCAC+CGG 0.628130 1.1:+3785503 MS.gene24419:CDS
GAATAATACGCAACACCAGG+TGG 0.633920 1.1:-3786763 None:intergenic
GCCGGTGACGGTGTTGCCGG+TGG 0.640514 1.1:-3785519 None:intergenic
CAATCGTCGATTCCTTCCCG+AGG 0.641783 1.1:+3786985 MS.gene24419:CDS
CATGGATGCTCTCAGATGCA+GGG 0.641801 1.1:+3786961 MS.gene24419:CDS
TTGTCCCAGGGCTAAAAGGG+AGG 0.643693 1.1:+3788348 MS.gene24419:intron
TTAGCATAACAACCTCGGGA+AGG 0.645636 1.1:-3786997 None:intergenic
GGATATCAGGGATGTGCAGG+TGG 0.646158 1.1:+3787691 MS.gene24419:CDS
ATGCAAGGATCCGTTCGTGT+GGG 0.646814 1.1:-3786919 None:intergenic
ATTTGTAAACCCATCAGCTG+AGG 0.649726 1.1:-3786866 None:intergenic
GCAACACCAGGTGGACCAAG+CGG 0.656850 1.1:-3786754 None:intergenic
ACTCAAAGAACCCATCTGGC+CGG 0.658538 1.1:-3789106 None:intergenic
TCTGAGCGAGTTGTAAGTGG+GGG 0.659759 1.1:+3786559 MS.gene24419:CDS
AGGAGACCTAAGTCGAAGAG+TGG 0.659853 1.1:+3786730 MS.gene24419:CDS
GTCCCTTCTTGAAACAGCAG+GGG 0.661080 1.1:-3787543 None:intergenic
GGCAACCCAGATGAGCCCAG+AGG 0.663230 1.1:+3787568 MS.gene24419:CDS
CATAGCTCCAACTAATCGAG+GGG 0.663654 1.1:-3786407 None:intergenic
AGCAGCAATACAGAAACTAG+AGG 0.664918 1.1:+3788417 MS.gene24419:CDS
AGATTCGAGAGTGAAGATGA+CGG 0.670327 1.1:-3785564 None:intergenic
AGTTGCCAGAACTTCTCACA+AGG 0.671762 1.1:+3789065 MS.gene24419:CDS
AATTATCGTCATTGTCAAGG+TGG 0.691775 1.1:+3786511 MS.gene24419:CDS
TTTCGGAGTTTAAGGAGTCG+CGG 0.692109 1.1:-3785655 None:intergenic
TTTCAGTTCCACAGCCACTG+AGG 0.695040 1.1:+3786710 MS.gene24419:CDS
ACGAACAACGACGCTCGTGG+AGG 0.699696 1.1:+3785468 MS.gene24419:CDS
CTAAATGGGAAGATGCGGAG+AGG 0.704130 1.1:+3786644 MS.gene24419:CDS
TTCGACTTAGGTCTCCTCAG+TGG 0.720239 1.1:-3786724 None:intergenic
CAGCATTTGGCAGGTCACGG+TGG 0.721166 1.1:+3785803 MS.gene24419:intron
AACGTGTAACCATGACAAGG+TGG 0.733238 1.1:+3787717 MS.gene24419:CDS
AAGGTGGTCCAAGAAACACA+AGG 0.772366 1.1:+3787733 MS.gene24419:CDS
ATGAACGTGTAACCATGACA+AGG 0.775798 1.1:+3787714 MS.gene24419:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACTTTCCTTTATTTTTA+AGG - chr1.1:3788888-3788907 None:intergenic 15.0%
!!! ATTATCTTAAGTTTCATTTT+GGG + chr1.1:3788532-3788551 MS.gene24419:intron 15.0%
!!! TAAAGAATTTTCTATTTTCT+AGG - chr1.1:3788228-3788247 None:intergenic 15.0%
!!! TATTATCTTAAGTTTCATTT+TGG + chr1.1:3788531-3788550 MS.gene24419:intron 15.0%
!! AAGATAATATATGTGTATGT+AGG - chr1.1:3788520-3788539 None:intergenic 20.0%
!! TATGATGAAGTAAAAAAAAG+TGG - chr1.1:3788788-3788807 None:intergenic 20.0%
!!! CTTTATTTAATAAGCAAGAT+CGG + chr1.1:3786323-3786342 MS.gene24419:CDS 20.0%
!!! TCTTTATATGACATTGATTT+CGG - chr1.1:3787949-3787968 None:intergenic 20.0%
!!! TGAGTTTGTTTTTTTGTATT+TGG + chr1.1:3786264-3786283 MS.gene24419:intron 20.0%
!!! TTTAGAATTTTAATATGCTC+TGG + chr1.1:3787206-3787225 MS.gene24419:intron 20.0%
!!! TTTCTGTTATGATTTTGATT+CGG - chr1.1:3785878-3785897 None:intergenic 20.0%
!!! TTTTTTCATCTGCTAAATAA+AGG + chr1.1:3787899-3787918 MS.gene24419:intron 20.0%
! AAAAAGTGAGAAAAAGAAAG+TGG - chr1.1:3786011-3786030 None:intergenic 25.0%
! ATTCATTAAATCAGAGTCTT+TGG + chr1.1:3787253-3787272 MS.gene24419:intron 25.0%
! TTATTACCACCTTTCAAATA+TGG + chr1.1:3788174-3788193 MS.gene24419:intron 25.0%
! TTTGTTCATAATCTTATCCA+TGG - chr1.1:3788980-3788999 None:intergenic 25.0%
!!! AAAACTCATATTACTGACTT+AGG + chr1.1:3788281-3788300 MS.gene24419:intron 25.0%
!!! ATTGACTTGCTTTTACTATT+GGG + chr1.1:3788642-3788661 MS.gene24419:intron 25.0%
!!! CACTAAATTTGCTATGTTAT+TGG + chr1.1:3788098-3788117 MS.gene24419:intron 25.0%
!!! CCTTTATTTTTAAGGAGAAA+GGG - chr1.1:3788880-3788899 None:intergenic 25.0%
!!! TATGTTTTGAATCTGATTTG+CGG + chr1.1:3787306-3787325 MS.gene24419:intron 25.0%
!!! TATTGACTTGCTTTTACTAT+TGG + chr1.1:3788641-3788660 MS.gene24419:intron 25.0%
!!! TCCTTTATTTTTAAGGAGAA+AGG - chr1.1:3788881-3788900 None:intergenic 25.0%
!!! TTTCTCTAAAATGGATATCA+GGG + chr1.1:3787679-3787698 MS.gene24419:CDS 25.0%
!!! TTTTCTAGGTTGAATTGAAT+AGG - chr1.1:3788214-3788233 None:intergenic 25.0%
!!! TTTTCTTTTCTTTTTCACGT+TGG + chr1.1:3787465-3787484 MS.gene24419:intron 25.0%
AAATTGAACTTAGGGAAAGA+GGG - chr1.1:3788599-3788618 None:intergenic 30.0%
ACCCTGAAATAAAGAAAACA+AGG - chr1.1:3788564-3788583 None:intergenic 30.0%
ACTCCAACCATATAATTTCA+AGG - chr1.1:3788054-3788073 None:intergenic 30.0%
AGAGTCTTTGGATGAAAATT+GGG + chr1.1:3787265-3787284 MS.gene24419:intron 30.0%
CAATCAGTACCATATTTGAA+AGG - chr1.1:3788186-3788205 None:intergenic 30.0%
CACATAATACTAACATGACA+TGG - chr1.1:3787410-3787429 None:intergenic 30.0%
CCCTGAAATAAAGAAAACAA+GGG - chr1.1:3788563-3788582 None:intergenic 30.0%
CCCTTTCTCCTTAAAAATAA+AGG + chr1.1:3788877-3788896 MS.gene24419:intron 30.0%
CTACCTTGAAATTATATGGT+TGG + chr1.1:3788048-3788067 MS.gene24419:intron 30.0%
CTGTATTAACTATTGTGATG+TGG + chr1.1:3787135-3787154 MS.gene24419:intron 30.0%
GGAAAAGCAGAAAAAACAAA+AGG + chr1.1:3785956-3785975 MS.gene24419:CDS 30.0%
TAAACAAAGAACCACTTGAA+GGG + chr1.1:3788440-3788459 MS.gene24419:intron 30.0%
TAAGATTAGCATAACAACCT+CGG - chr1.1:3787005-3787024 None:intergenic 30.0%
TACATAAAAATCCCTTCAAG+TGG - chr1.1:3788454-3788473 None:intergenic 30.0%
TATAATTTCAAGGTAGCTCA+TGG - chr1.1:3788044-3788063 None:intergenic 30.0%
TATCAACATCACAGTTCAAA+AGG + chr1.1:3786078-3786097 MS.gene24419:intron 30.0%
TCACAACTCAAAACTAGATA+AGG - chr1.1:3787054-3787073 None:intergenic 30.0%
TCTTTCCCTAAGTTCAATTT+CGG + chr1.1:3788599-3788618 MS.gene24419:intron 30.0%
TGAGCTACCTTGAAATTATA+TGG + chr1.1:3788044-3788063 MS.gene24419:intron 30.0%
TGGATTAAGAATGTCAAGAT+CGG + chr1.1:3786284-3786303 MS.gene24419:intron 30.0%
! GAGTATCTCTTTCTCTAAAA+TGG + chr1.1:3787670-3787689 MS.gene24419:CDS 30.0%
! GCATAATAGTTTTCATAACG+TGG - chr1.1:3787358-3787377 None:intergenic 30.0%
!! AGTAAATTTTGTTTGTCCCA+GGG + chr1.1:3788336-3788355 MS.gene24419:intron 30.0%
!! CTTTCTCTAAAATGGATATC+AGG + chr1.1:3787678-3787697 MS.gene24419:CDS 30.0%
!! TTTGCTATTTCAGATGAAGT+TGG + chr1.1:3788936-3788955 MS.gene24419:intron 30.0%
!!! CCCTTGTTTTCTTTATTTCA+GGG + chr1.1:3788560-3788579 MS.gene24419:intron 30.0%
!!! TCCCTTGTTTTCTTTATTTC+AGG + chr1.1:3788559-3788578 MS.gene24419:intron 30.0%
!!! TTATGATTTTGATTCGGATC+CGG - chr1.1:3785872-3785891 None:intergenic 30.0%
AAAGGGATTCTTAATGCATG+CGG - chr1.1:3788863-3788882 None:intergenic 35.0%
AAGATTAGCATAACAACCTC+GGG - chr1.1:3787004-3787023 None:intergenic 35.0%
AATGCTAATGCAACTGGAAT+TGG + chr1.1:3786373-3786392 MS.gene24419:CDS 35.0%
AATTATCGTCATTGTCAAGG+TGG + chr1.1:3786511-3786530 MS.gene24419:CDS 35.0%
ACTGAAATTCGCTCAGAAAA+AGG + chr1.1:3788999-3789018 MS.gene24419:CDS 35.0%
ACTGCGTTGTGTTTAAGTAA+TGG + chr1.1:3786607-3786626 MS.gene24419:CDS 35.0%
AGAGAAAGAAGTCCTCATAT+TGG - chr1.1:3787612-3787631 None:intergenic 35.0%
AGATGACCGAAATTGAACTT+AGG - chr1.1:3788608-3788627 None:intergenic 35.0%
ATATCATGTACGCAGAAGTA+TGG - chr1.1:3787442-3787461 None:intergenic 35.0%
ATGTAGGAGCAATAATTGCT+TGG - chr1.1:3788504-3788523 None:intergenic 35.0%
CAAACTTCTCCTCTGTAAAT+TGG - chr1.1:3787493-3787512 None:intergenic 35.0%
CAGAGTCTTTGGATGAAAAT+TGG + chr1.1:3787264-3787283 MS.gene24419:intron 35.0%
CCTTGACAATGACGATAATT+CGG - chr1.1:3786511-3786530 None:intergenic 35.0%
CTGCGTTGTGTTTAAGTAAT+GGG + chr1.1:3786608-3786627 MS.gene24419:CDS 35.0%
CTGGGACAAACAAAATTTAC+TGG - chr1.1:3788337-3788356 None:intergenic 35.0%
GAAATTGAACTTAGGGAAAG+AGG - chr1.1:3788600-3788619 None:intergenic 35.0%
GAGAAAGAAGTCCTCATATT+GGG - chr1.1:3787611-3787630 None:intergenic 35.0%
GATGACCGAAATTGAACTTA+GGG - chr1.1:3788607-3788626 None:intergenic 35.0%
GGGAAAACTTCACTTCTTAT+TGG - chr1.1:3787977-3787996 None:intergenic 35.0%
GTAAACAAAGAACCACTTGA+AGG + chr1.1:3788439-3788458 MS.gene24419:intron 35.0%
TATGGTTCAGACTAGGAAAT+CGG + chr1.1:3786438-3786457 MS.gene24419:CDS 35.0%
TCAGTACCATATTTGAAAGG+TGG - chr1.1:3788183-3788202 None:intergenic 35.0%
TGAAGACGGAAATCAACTTT+CGG + chr1.1:3786120-3786139 MS.gene24419:CDS 35.0%
TGGACTAATGTCATTACTGT+GGG + chr1.1:3788731-3788750 MS.gene24419:intron 35.0%
! ATGGACTAATGTCATTACTG+TGG + chr1.1:3788730-3788749 MS.gene24419:intron 35.0%
! CTAGGTTGAATTGAATAGGA+TGG - chr1.1:3788210-3788229 None:intergenic 35.0%
! CTCACAAGGTTATGTCATTT+CGG + chr1.1:3789079-3789098 MS.gene24419:CDS 35.0%
! CTTTTGCAAATTTTCCCATG+CGG - chr1.1:3788386-3788405 None:intergenic 35.0%
! GATGGGTTTACAAATAGTTC+TGG + chr1.1:3786874-3786893 MS.gene24419:CDS 35.0%
! TAAACCGACAAGACTAGTTA+TGG + chr1.1:3788711-3788730 MS.gene24419:intron 35.0%
!! AGTGACATTGATTCTGAAGA+CGG + chr1.1:3786106-3786125 MS.gene24419:CDS 35.0%
!! CAGTAAATTTTGTTTGTCCC+AGG + chr1.1:3788335-3788354 MS.gene24419:intron 35.0%
!! GTCTTGTCGGTTTAAGATAA+TGG - chr1.1:3788705-3788724 None:intergenic 35.0%
!! TAGTCCATAACTAGTCTTGT+CGG - chr1.1:3788718-3788737 None:intergenic 35.0%
AACGAATAATACGCAACACC+AGG - chr1.1:3786769-3786788 None:intergenic 40.0%
AATGCAACTGGAATTGGAAC+TGG + chr1.1:3786379-3786398 MS.gene24419:CDS 40.0%
AGAAAAAGGCTCAGGAAATG+AGG + chr1.1:3789013-3789032 MS.gene24419:CDS 40.0%
AGATTCGAGAGTGAAGATGA+CGG - chr1.1:3785567-3785586 None:intergenic 40.0%
AGCAGCAATACAGAAACTAG+AGG + chr1.1:3788417-3788436 MS.gene24419:CDS 40.0%
ATACTCTGCAAATCTGTGAC+GGG - chr1.1:3787656-3787675 None:intergenic 40.0%
ATGAACGTGTAACCATGACA+AGG + chr1.1:3787714-3787733 MS.gene24419:CDS 40.0%
ATGGTTCAGACTAGGAAATC+GGG + chr1.1:3786439-3786458 MS.gene24419:CDS 40.0%
ATTTGTAAACCCATCAGCTG+AGG - chr1.1:3786869-3786888 None:intergenic 40.0%
CAGTGAGATTTCGGAGTTTA+AGG - chr1.1:3785666-3785685 None:intergenic 40.0%
CATAACCTTGTGAGAAGTTC+TGG - chr1.1:3789073-3789092 None:intergenic 40.0%
CCGAATTATCGTCATTGTCA+AGG + chr1.1:3786508-3786527 MS.gene24419:CDS 40.0%
CGCATGGGAAAATTTGCAAA+AGG + chr1.1:3788384-3788403 MS.gene24419:CDS 40.0%
CTGAACAATGCTAATGCAAC+TGG + chr1.1:3786367-3786386 MS.gene24419:CDS 40.0%
CTTAAACTCCGAAATCTCAC+TGG + chr1.1:3785664-3785683 MS.gene24419:CDS 40.0%
GAAGATGAACTTGCAGCATT+TGG + chr1.1:3785790-3785809 MS.gene24419:intron 40.0%
GATACTCTGCAAATCTGTGA+CGG - chr1.1:3787657-3787676 None:intergenic 40.0%
GATGATCACTTGAGCTAGTA+GGG - chr1.1:3788482-3788501 None:intergenic 40.0%
GCATTAACAGCAGCAGAAAA+AGG - chr1.1:3786847-3786866 None:intergenic 40.0%
GGAGAAGTTTGATGCTTTCA+AGG + chr1.1:3787502-3787521 MS.gene24419:CDS 40.0%
GTGTTGCAATGCAAAAAGGT+TGG + chr1.1:3786533-3786552 MS.gene24419:CDS 40.0%
GTTCAGAAAATGTTGACAGC+TGG + chr1.1:3787774-3787793 MS.gene24419:CDS 40.0%
GTTTGATGCTTTCAAGGATG+CGG + chr1.1:3787508-3787527 MS.gene24419:CDS 40.0%
TCATAGCTCCAACTAATCGA+GGG - chr1.1:3786411-3786430 None:intergenic 40.0%
TCTTTCTCTCTAGCACTCAA+AGG + chr1.1:3786163-3786182 MS.gene24419:CDS 40.0%
TGAACCTCTACCAGTGAATA+GGG - chr1.1:3787759-3787778 None:intergenic 40.0%
TGGAGCTATGAAGAAGAGTA+TGG + chr1.1:3786420-3786439 MS.gene24419:CDS 40.0%
TTCATAGCTCCAACTAATCG+AGG - chr1.1:3786412-3786431 None:intergenic 40.0%
TTGTTCAGATCTAACGAAGC+AGG - chr1.1:3786355-3786374 None:intergenic 40.0%
TTTGATGCTTTCAAGGATGC+GGG + chr1.1:3787509-3787528 MS.gene24419:CDS 40.0%
! AGAAGAGTATGGTTCAGACT+AGG + chr1.1:3786431-3786450 MS.gene24419:CDS 40.0%
! ATTACTGTGGGCTGTCTAAT+AGG + chr1.1:3788743-3788762 MS.gene24419:intron 40.0%
! ATTTTCCCATGCGGTGATTT+TGG - chr1.1:3788377-3788396 None:intergenic 40.0%
! GTGAAGTACCAGTGAGATTT+CGG - chr1.1:3785675-3785694 None:intergenic 40.0%
! TGTGATGTGGATTGAACTCT+TGG + chr1.1:3787148-3787167 MS.gene24419:intron 40.0%
!! ACAAATAGTTCTGGTGGCAA+TGG + chr1.1:3786883-3786902 MS.gene24419:CDS 40.0%
!! GGGTTTACAAATAGTTCTGG+TGG + chr1.1:3786877-3786896 MS.gene24419:CDS 40.0%
!! GTGGATTTTGAGTCCTGTTT+CGG + chr1.1:3786666-3786685 MS.gene24419:CDS 40.0%
!! TGGATTTTGAGTCCTGTTTC+GGG + chr1.1:3786667-3786686 MS.gene24419:CDS 40.0%
AAACACAAGGCCCTATTCAC+TGG + chr1.1:3787746-3787765 MS.gene24419:CDS 45.0%
AAAGAAGCGAGCATCTTCCA+TGG + chr1.1:3788960-3788979 MS.gene24419:CDS 45.0%
AACCACTCAAAGAACCCATC+TGG - chr1.1:3789113-3789132 None:intergenic 45.0%
AACGTGTAACCATGACAAGG+TGG + chr1.1:3787717-3787736 MS.gene24419:CDS 45.0%
AAGGTGGTCCAAGAAACACA+AGG + chr1.1:3787733-3787752 MS.gene24419:CDS 45.0%
AATGGATATCAGGGATGTGC+AGG + chr1.1:3787688-3787707 MS.gene24419:CDS 45.0%
AGAAGTCCTCATATTGGGAG+AGG - chr1.1:3787606-3787625 None:intergenic 45.0%
AGTTGCCAGAACTTCTCACA+AGG + chr1.1:3789065-3789084 MS.gene24419:CDS 45.0%
ATGAACTTGCAGCATTTGGC+AGG + chr1.1:3785794-3785813 MS.gene24419:intron 45.0%
ATGTCCCTTCTTGAAACAGC+AGG - chr1.1:3787548-3787567 None:intergenic 45.0%
ATTCGCTCAGAAAAAGGCTC+AGG + chr1.1:3789005-3789024 MS.gene24419:CDS 45.0%
CAGCACTCGATCTTCATCTT+GGG + chr1.1:3787811-3787830 MS.gene24419:CDS 45.0%
CATAGCTCCAACTAATCGAG+GGG - chr1.1:3786410-3786429 None:intergenic 45.0%
CCATCAAAAAAGTGACCTGC+AGG - chr1.1:3786799-3786818 None:intergenic 45.0%
CTGAACCTCTACCAGTGAAT+AGG - chr1.1:3787760-3787779 None:intergenic 45.0%
CTGTTAATGCCTCAGCTGAT+GGG + chr1.1:3786857-3786876 MS.gene24419:CDS 45.0%
GAATAATACGCAACACCAGG+TGG - chr1.1:3786766-3786785 None:intergenic 45.0%
GAGAACGTTGCCGTCTAAAT+GGG + chr1.1:3786630-3786649 MS.gene24419:CDS 45.0%
GGATGATCACTTGAGCTAGT+AGG - chr1.1:3788483-3788502 None:intergenic 45.0%
TAATTCGGAGTTCCAGGACT+CGG - chr1.1:3786496-3786515 None:intergenic 45.0%
TATTCGTTGTATTCGCCTGC+AGG + chr1.1:3786781-3786800 MS.gene24419:CDS 45.0%
TCAAGGTAGCTCATGGCATT+TGG - chr1.1:3788037-3788056 None:intergenic 45.0%
TCAGACTAGGAAATCGGGAA+CGG + chr1.1:3786444-3786463 MS.gene24419:CDS 45.0%
TCCGCATCTTCCCATTTAGA+CGG - chr1.1:3786643-3786662 None:intergenic 45.0%
TGAAACAGCAGGGGATACAT+TGG - chr1.1:3787537-3787556 None:intergenic 45.0%
TGACGATAATTCGGAGTTCC+AGG - chr1.1:3786502-3786521 None:intergenic 45.0%
TGTCCCTTCTTGAAACAGCA+GGG - chr1.1:3787547-3787566 None:intergenic 45.0%
TGTTTGTCCCAGGGCTAAAA+GGG + chr1.1:3788345-3788364 MS.gene24419:intron 45.0%
TTAGCATAACAACCTCGGGA+AGG - chr1.1:3787000-3787019 None:intergenic 45.0%
TTCTGAGCGAGTTGTAAGTG+GGG + chr1.1:3786558-3786577 MS.gene24419:CDS 45.0%
TTGTTTGTCCCAGGGCTAAA+AGG + chr1.1:3788344-3788363 MS.gene24419:intron 45.0%
TTTCGGAGTTTAAGGAGTCG+CGG - chr1.1:3785658-3785677 None:intergenic 45.0%
TTTCTTGGACCACCTTGTCA+TGG - chr1.1:3787729-3787748 None:intergenic 45.0%
! ATTTTGCTCCGAGTGAAAGC+TGG + chr1.1:3785828-3785847 MS.gene24419:CDS 45.0%
! CACCATTACCAACTTGCTTC+CGG - chr1.1:3786585-3786604 None:intergenic 45.0%
! CTTCGCGAAACTCTTTTCTC+TGG + chr1.1:3785935-3785954 MS.gene24419:CDS 45.0%
! GAATAGGGCCTTGTGTTTCT+TGG - chr1.1:3787744-3787763 None:intergenic 45.0%
! GTTATGTCATTTCGGAGAGC+CGG + chr1.1:3789087-3789106 MS.gene24419:CDS 45.0%
! GTTCTGAGCGAGTTGTAAGT+GGG + chr1.1:3786557-3786576 MS.gene24419:CDS 45.0%
!! AATAGTTCTGGTGGCAATGG+TGG + chr1.1:3786886-3786905 MS.gene24419:CDS 45.0%
!! ACGTTGGCTCCAATTTACAG+AGG + chr1.1:3787481-3787500 MS.gene24419:intron 45.0%
!! AGTTCTGAGCGAGTTGTAAG+TGG + chr1.1:3786556-3786575 MS.gene24419:CDS 45.0%
!! ATCCCCTGCTGTTTCAAGAA+GGG + chr1.1:3787541-3787560 MS.gene24419:CDS 45.0%
!! ATTTTGAGTCCTGTTTCGGG+GGG + chr1.1:3786670-3786689 MS.gene24419:CDS 45.0%
!! GATTTTGAGTCCTGTTTCGG+GGG + chr1.1:3786669-3786688 MS.gene24419:CDS 45.0%
!! GGATTTTGAGTCCTGTTTCG+GGG + chr1.1:3786668-3786687 MS.gene24419:CDS 45.0%
!! GGTGGTGTTGCAATGCAAAA+AGG + chr1.1:3786529-3786548 MS.gene24419:CDS 45.0%
!! TATCCCCTGCTGTTTCAAGA+AGG + chr1.1:3787540-3787559 MS.gene24419:CDS 45.0%
!! TGCTGTTTCAAGAAGGGACA+TGG + chr1.1:3787547-3787566 MS.gene24419:CDS 45.0%
!!! CCTGCAGGTCACTTTTTTGA+TGG + chr1.1:3786796-3786815 MS.gene24419:CDS 45.0%
!!! GCAGGTCACTTTTTTGATGG+AGG + chr1.1:3786799-3786818 MS.gene24419:CDS 45.0%
!!! TTTTGATTCGGATCCGGATC+CGG - chr1.1:3785866-3785885 None:intergenic 45.0%
AAGCGGAGGAGAAGAGACTA+AGG - chr1.1:3785592-3785611 None:intergenic 50.0%
AAGGCCCTATTCACTGGTAG+AGG + chr1.1:3787752-3787771 MS.gene24419:CDS 50.0%
ACATGGATGCTCTCAGATGC+AGG + chr1.1:3786960-3786979 MS.gene24419:CDS 50.0%
ACTCAAAGAACCCATCTGGC+CGG - chr1.1:3789109-3789128 None:intergenic 50.0%
ACTGGTACATTTCCGAGTCC+TGG + chr1.1:3786481-3786500 MS.gene24419:CDS 50.0%
AGGAAGCCAAAATCACCGCA+TGG + chr1.1:3788368-3788387 MS.gene24419:CDS 50.0%
AGGAGACCTAAGTCGAAGAG+TGG + chr1.1:3786730-3786749 MS.gene24419:CDS 50.0%
ATGCAAGGATCCGTTCGTGT+GGG - chr1.1:3786922-3786941 None:intergenic 50.0%
CAGACTAGGAAATCGGGAAC+GGG + chr1.1:3786445-3786464 MS.gene24419:CDS 50.0%
CATGCTCCTCTCCCAATATG+AGG + chr1.1:3787597-3787616 MS.gene24419:CDS 50.0%
CATGGATGCTCTCAGATGCA+GGG + chr1.1:3786961-3786980 MS.gene24419:CDS 50.0%
CCAAGATGAAGATCGAGTGC+TGG - chr1.1:3787813-3787832 None:intergenic 50.0%
CCAGCACTCGATCTTCATCT+TGG + chr1.1:3787810-3787829 MS.gene24419:CDS 50.0%
CTAAATGGGAAGATGCGGAG+AGG + chr1.1:3786644-3786663 MS.gene24419:CDS 50.0%
GAGTTCAGTTTCAGTCGACC+AGG + chr1.1:3789035-3789054 MS.gene24419:CDS 50.0%
GCCGTCTAAATGGGAAGATG+CGG + chr1.1:3786639-3786658 MS.gene24419:CDS 50.0%
GCTCGCTCAGTTAGTGTACA+TGG + chr1.1:3786943-3786962 MS.gene24419:CDS 50.0%
GCTGTTAATGCCTCAGCTGA+TGG + chr1.1:3786856-3786875 MS.gene24419:CDS 50.0%
GGAAGCCAAAATCACCGCAT+GGG + chr1.1:3788369-3788388 MS.gene24419:CDS 50.0%
GGAGAACGTTGCCGTCTAAA+TGG + chr1.1:3786629-3786648 MS.gene24419:CDS 50.0%
GGTTAAGAGCAGAGCGAGAA+GGG - chr1.1:3788016-3788035 None:intergenic 50.0%
GGTTCTTCCCCTCGATTAGT+TGG + chr1.1:3786400-3786419 MS.gene24419:CDS 50.0%
GTCCCTTCTTGAAACAGCAG+GGG - chr1.1:3787546-3787565 None:intergenic 50.0%
GTTAAGAGCAGAGCGAGAAG+GGG - chr1.1:3788015-3788034 None:intergenic 50.0%
TCAAGAACACGCAACACCAC+CGG + chr1.1:3785503-3785522 MS.gene24419:CDS 50.0%
TCTGAGCGAGTTGTAAGTGG+GGG + chr1.1:3786559-3786578 MS.gene24419:CDS 50.0%
TGGTTAAGAGCAGAGCGAGA+AGG - chr1.1:3788017-3788036 None:intergenic 50.0%
TTAAGAGCAGAGCGAGAAGG+GGG - chr1.1:3788014-3788033 None:intergenic 50.0%
TTCGACTTAGGTCTCCTCAG+TGG - chr1.1:3786727-3786746 None:intergenic 50.0%
TTCTGGCAACTTGATGAGCC+TGG - chr1.1:3789056-3789075 None:intergenic 50.0%
TTGCAGCATTTGGCAGGTCA+CGG + chr1.1:3785800-3785819 MS.gene24419:intron 50.0%
TTTCAGTTCCACAGCCACTG+AGG + chr1.1:3786710-3786729 MS.gene24419:CDS 50.0%
! AAGGGGGGAGTTGACTTCAA+CGG - chr1.1:3787998-3788017 None:intergenic 50.0%
! GGTGTTGCGTGTTCTTGAAC+CGG - chr1.1:3785501-3785520 None:intergenic 50.0%
!! AGAGTGAAGATGACGGAGTC+AGG - chr1.1:3785560-3785579 None:intergenic 50.0%
AAGCTGGAGTGGTCCAGATC+CGG + chr1.1:3785844-3785863 MS.gene24419:CDS 55.0%
AAGTCGAAGAGTGGTCCGCT+TGG + chr1.1:3786739-3786758 MS.gene24419:CDS 55.0%
AATGGGAAGATGCGGAGAGG+TGG + chr1.1:3786647-3786666 MS.gene24419:CDS 55.0%
AGCGGACCACTCTTCGACTT+AGG - chr1.1:3786739-3786758 None:intergenic 55.0%
ATCGGGAACGGGTACAGTGT+CGG + chr1.1:3786456-3786475 MS.gene24419:CDS 55.0%
CACACGAACGGATCCTTGCA+TGG + chr1.1:3786921-3786940 MS.gene24419:CDS 55.0%
CATGCAAGGATCCGTTCGTG+TGG - chr1.1:3786923-3786942 None:intergenic 55.0%
CTAACTGAGCGAGCCATGCA+AGG - chr1.1:3786937-3786956 None:intergenic 55.0%
GGACCACTCCAGCTTTCACT+CGG - chr1.1:3785839-3785858 None:intergenic 55.0%
GGATATCAGGGATGTGCAGG+TGG + chr1.1:3787691-3787710 MS.gene24419:CDS 55.0%
TAAGAGCAGAGCGAGAAGGG+GGG - chr1.1:3788013-3788032 None:intergenic 55.0%
TTAGGTCTCCTCAGTGGCTG+TGG - chr1.1:3786721-3786740 None:intergenic 55.0%
TTCACGAACAACGACGCTCG+TGG + chr1.1:3785465-3785484 MS.gene24419:CDS 55.0%
TTGTCCCAGGGCTAAAAGGG+AGG + chr1.1:3788348-3788367 MS.gene24419:intron 55.0%
! AGGAGCATGAGCTACCCTCT+GGG - chr1.1:3787586-3787605 None:intergenic 55.0%
! AGGGGGGAGTTGACTTCAAC+GGG - chr1.1:3787997-3788016 None:intergenic 55.0%
! AGTTCTGGTGGCAATGGTGG+TGG + chr1.1:3786889-3786908 MS.gene24419:CDS 55.0%
! GCTTCCTCCCTTTTAGCCCT+GGG - chr1.1:3788355-3788374 None:intergenic 55.0%
! GGCCAGATGGGTTCTTTGAG+TGG + chr1.1:3789108-3789127 MS.gene24419:CDS 55.0%
!! AAATCTGTGACGGGCAGGGA+AGG - chr1.1:3787647-3787666 None:intergenic 55.0%
!! CAATCGTCGATTCCTTCCCG+AGG + chr1.1:3786985-3787004 MS.gene24419:CDS 55.0%
!! CTGCAAATCTGTGACGGGCA+GGG - chr1.1:3787651-3787670 None:intergenic 55.0%
!! GGCCGGAAGCAAGTTGGTAA+TGG + chr1.1:3786580-3786599 MS.gene24419:CDS 55.0%
!! TCTGCAAATCTGTGACGGGC+AGG - chr1.1:3787652-3787671 None:intergenic 55.0%
ACGAACAACGACGCTCGTGG+AGG + chr1.1:3785468-3785487 MS.gene24419:CDS 60.0%
AGCGAGTTGTAAGTGGGGGC+CGG + chr1.1:3786563-3786582 MS.gene24419:CDS 60.0%
AGCTACCCTCTGGGCTCATC+TGG - chr1.1:3787577-3787596 None:intergenic 60.0%
AGGACTTGTATCGCAGCCGC+CGG - chr1.1:3785540-3785559 None:intergenic 60.0%
AGTCCTGTTTCGGGGGGTGA+TGG + chr1.1:3786676-3786695 MS.gene24419:CDS 60.0%
ATTTCGGAGAGCCGGCCAGA+TGG + chr1.1:3789095-3789114 MS.gene24419:CDS 60.0%
CAGCATTTGGCAGGTCACGG+TGG + chr1.1:3785803-3785822 MS.gene24419:intron 60.0%
GAGTGGTCCAGATCCGGATC+CGG + chr1.1:3785850-3785869 MS.gene24419:CDS 60.0%
GCAACACCAGGTGGACCAAG+CGG - chr1.1:3786757-3786776 None:intergenic 60.0%
GCAACCCAGATGAGCCCAGA+GGG + chr1.1:3787569-3787588 MS.gene24419:CDS 60.0%
GCTACCCTCTGGGCTCATCT+GGG - chr1.1:3787576-3787595 None:intergenic 60.0%
GCTCCGAGTGAAAGCTGGAG+TGG + chr1.1:3785833-3785852 MS.gene24419:CDS 60.0%
GTTCCATCACCCCCCGAAAC+AGG - chr1.1:3786682-3786701 None:intergenic 60.0%
TCGGGAACGGGTACAGTGTC+GGG + chr1.1:3786457-3786476 MS.gene24419:CDS 60.0%
TGGAGGGCTTCCCACACGAA+CGG + chr1.1:3786909-3786928 MS.gene24419:CDS 60.0%
TTCGGATCCGGATCCGGATC+TGG - chr1.1:3785860-3785879 None:intergenic 60.0%
TTTCGGAGAGCCGGCCAGAT+GGG + chr1.1:3789096-3789115 MS.gene24419:CDS 60.0%
! GAGGAGCATGAGCTACCCTC+TGG - chr1.1:3787587-3787606 None:intergenic 60.0%
! GGCTTCCTCCCTTTTAGCCC+TGG - chr1.1:3788356-3788375 None:intergenic 60.0%
!! CTGGTGGCAATGGTGGTGGA+GGG + chr1.1:3786893-3786912 MS.gene24419:CDS 60.0%
!! GGGGGGTGATGGAACTGGAA+GGG + chr1.1:3786687-3786706 MS.gene24419:CDS 60.0%
!! GTCGTGAGCATCGGAAGCGA+AGG - chr1.1:3785636-3785655 None:intergenic 60.0%
!! GTTTCGGGGGGTGATGGAAC+TGG + chr1.1:3786682-3786701 MS.gene24419:CDS 60.0%
!! TCTGGTGGCAATGGTGGTGG+AGG + chr1.1:3786892-3786911 MS.gene24419:CDS 60.0%
ACCACCGGCAACACCGTCAC+CGG + chr1.1:3785518-3785537 MS.gene24419:CDS 65.0%
AGTGGGGGCCGGAAGCAAGT+TGG + chr1.1:3786574-3786593 MS.gene24419:CDS 65.0%
AGTGGTCCGCTTGGTCCACC+TGG + chr1.1:3786748-3786767 MS.gene24419:CDS 65.0%
CGGGAACGGGTACAGTGTCG+GGG + chr1.1:3786458-3786477 MS.gene24419:CDS 65.0%
GAAGGAGCAGCGATCGACGC+TGG - chr1.1:3785618-3785637 None:intergenic 65.0%
GGAGTCGCGGTCGTGAGCAT+CGG - chr1.1:3785645-3785664 None:intergenic 65.0%
GGCAACCCAGATGAGCCCAG+AGG + chr1.1:3787568-3787587 MS.gene24419:CDS 65.0%
TGTATCGCAGCCGCCGGTGA+CGG - chr1.1:3785534-3785553 None:intergenic 65.0%
! ACGGGTACAGTGTCGGGGAC+TGG + chr1.1:3786463-3786482 MS.gene24419:CDS 65.0%
! CGCTCGTGGAGGCGTAACAC+CGG + chr1.1:3785479-3785498 MS.gene24419:CDS 65.0%
!! CGGGGGGTGATGGAACTGGA+AGG + chr1.1:3786686-3786705 MS.gene24419:CDS 65.0%
!! TCTGTGACGGGCAGGGAAGG+TGG - chr1.1:3787644-3787663 None:intergenic 65.0%
ACCGGCAACACCGTCACCGG+CGG + chr1.1:3785521-3785540 MS.gene24419:CDS 70.0%
ATCGACGCTGGCGGAAGCGG+AGG - chr1.1:3785606-3785625 None:intergenic 70.0%
GACGGGCAGGGAAGGTGGAG+TGG - chr1.1:3787639-3787658 None:intergenic 70.0%
GCGATCGACGCTGGCGGAAG+CGG - chr1.1:3785609-3785628 None:intergenic 70.0%
GGAGCAGCGATCGACGCTGG+CGG - chr1.1:3785615-3785634 None:intergenic 70.0%
!! GCCGCCGGTGACGGTGTTGC+CGG - chr1.1:3785525-3785544 None:intergenic 75.0%
!! GCCGGTGACGGTGTTGCCGG+TGG - chr1.1:3785522-3785541 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 3785449 3789155 3785449 ID=MS.gene24419
chr1.1 mRNA 3785449 3789155 3785449 ID=MS.gene24419.t1;Parent=MS.gene24419
chr1.1 exon 3785449 3785685 3785449 ID=MS.gene24419.t1.exon1;Parent=MS.gene24419.t1
chr1.1 CDS 3785449 3785685 3785449 ID=cds.MS.gene24419.t1;Parent=MS.gene24419.t1
chr1.1 exon 3785806 3785977 3785806 ID=MS.gene24419.t1.exon2;Parent=MS.gene24419.t1
chr1.1 CDS 3785806 3785977 3785806 ID=cds.MS.gene24419.t1;Parent=MS.gene24419.t1
chr1.1 exon 3786092 3786184 3786092 ID=MS.gene24419.t1.exon3;Parent=MS.gene24419.t1
chr1.1 CDS 3786092 3786184 3786092 ID=cds.MS.gene24419.t1;Parent=MS.gene24419.t1
chr1.1 exon 3786293 3787006 3786293 ID=MS.gene24419.t1.exon4;Parent=MS.gene24419.t1
chr1.1 CDS 3786293 3787006 3786293 ID=cds.MS.gene24419.t1;Parent=MS.gene24419.t1
chr1.1 exon 3787501 3787864 3787501 ID=MS.gene24419.t1.exon5;Parent=MS.gene24419.t1
chr1.1 CDS 3787501 3787864 3787501 ID=cds.MS.gene24419.t1;Parent=MS.gene24419.t1
chr1.1 exon 3788357 3788438 3788357 ID=MS.gene24419.t1.exon6;Parent=MS.gene24419.t1
chr1.1 CDS 3788357 3788438 3788357 ID=cds.MS.gene24419.t1;Parent=MS.gene24419.t1
chr1.1 exon 3788949 3789155 3788949 ID=MS.gene24419.t1.exon7;Parent=MS.gene24419.t1
chr1.1 CDS 3788949 3789155 3788949 ID=cds.MS.gene24419.t1;Parent=MS.gene24419.t1
Gene Sequence

>MS.gene24419

ATGCGTGATTTAGGGTTTCACGAACAACGACGCTCGTGGAGGCGTAACACCGGTTCAAGAACACGCAACACCACCGGCAACACCGTCACCGGCGGCTGCGATACAAGTCCTGACTCCGTCATCTTCACTCTCGAATCTAACCTTAGTCTCTTCTCCTCCGCTTCCGCCAGCGTCGATCGCTGCTCCTTCGCTTCCGATGCTCACGACCGCGACTCCTTAAACTCCGAAATCTCACTGGTACTTCACATTGCATTGCACTGAAACTGAATCTCTCATTTTCGTAACAATAATAACGAAATTCGTGTAATGAAGTTCAAATTCGTGCTTCGAAGTTCTAACAAGAAGATGAACTTGCAGCATTTGGCAGGTCACGGTGGTGATTTTGCTCCGAGTGAAAGCTGGAGTGGTCCAGATCCGGATCCGGATCCGAATCAAAATCATAACAGAAAACAACATGCAGATTCAGATTCAGTTCAGAAAAAGAAACTTCGCGAAACTCTTTTCTCTGGAAAAGCAGAAAAAACAAAAGGTTCGTTACATTCACATTCACATGCATTTTCCACTTTCTTTTTCTCACTTTTTAATTATTTATTTTGTTTTTCATTTTTTATATAAATCTTGCATCGCACTATCAACATCACAGTTCAAAAGGAAGATAGTGACATTGATTCTGAAGACGGAAATCAACTTTCGGAGTTTGATTCTGCAAGAAACTCTTTCTCTCTAGCACTCAAAGGTAGTTTACTAATTTTTATCACTTCAAGTCTTCAATTACGAATTTAGATTTTGAGTTTAGTTTATTTTTTTTTTTTGATTGAGTTTGTTTTTTTGTATTTGGATTAAGAATGTCAAGATCGGAGATCGAGATGTGAAGCTTTATTTAATAAGCAAGATCGGCGAAGACCTGCTTCGTTAGATCTGAACAATGCTAATGCAACTGGAATTGGAACTGGTTCTTCCCCTCGATTAGTTGGAGCTATGAAGAAGAGTATGGTTCAGACTAGGAAATCGGGAACGGGTACAGTGTCGGGGACTGGTACATTTCCGAGTCCTGGAACTCCGAATTATCGTCATTGTCAAGGTGGTGTTGCAATGCAAAAAGGTTGGAGTTCTGAGCGAGTTGTAAGTGGGGGCCGGAAGCAAGTTGGTAATGGTGTGACTGCGTTGTGTTTAAGTAATGGGAGAACGTTGCCGTCTAAATGGGAAGATGCGGAGAGGTGGATTTTGAGTCCTGTTTCGGGGGGTGATGGAACTGGAAGGGTTTCAGTTCCACAGCCACTGAGGAGACCTAAGTCGAAGAGTGGTCCGCTTGGTCCACCTGGTGTTGCGTATTATTCGTTGTATTCGCCTGCAGGTCACTTTTTTGATGGAGGAAATTTTATGACAGCTGCTTCACCTTTTTCTGCTGCTGTTAATGCCTCAGCTGATGGGTTTACAAATAGTTCTGGTGGCAATGGTGGTGGAGGGCTTCCCACACGAACGGATCCTTGCATGGCTCGCTCAGTTAGTGTACATGGATGCTCTCAGATGCAGGGTCAATCGTCGATTCCTTCCCGAGGTTGTTATGCTAATCTTAATATAATATTCATTGATGAAATTTTACCTTATCTAGTTTTGAGTTGTGATTTTGATGTAATTTGTATGTTAAGTTATGCTTGAGTTCTGAACACTTCATACTTTTTCATTCTGTATTAACTATTGTGATGTGGATTGAACTCTTGGTTTCGTAAGACATTTCAAATGATGATACTTGATTGTTTAGAATTTTAATATGCTCTGGTCAAGAAAGTGACACTGTTACTGCATTCATTAAATCAGAGTCTTTGGATGAAAATTGGGCAGCTCACATTCTGAGCTTATGTTTTGAATCTGATTTGCGGATTGTTATTTCTTGACTGTAGAAAATCCACGTTATGAAAACTATTATGCTTAATGATGTAATAATTTAAGTTTAGATGCCATGTCATGTTAGTATTATGTGATTATTATACCATACTTCTGCGTACATGATATAACTTTTCTTTTCTTTTTCACGTTGGCTCCAATTTACAGAGGAGAAGTTTGATGCTTTCAAGGATGCGGGCACCAATGTATCCCCTGCTGTTTCAAGAAGGGACATGGCAACCCAGATGAGCCCAGAGGGTAGCTCATGCTCCTCTCCCAATATGAGGACTTCTTTCTCTGCTTCCACTCCACCTTCCCTGCCCGTCACAGATTTGCAGAGTATCTCTTTCTCTAAAATGGATATCAGGGATGTGCAGGTGGATGAACGTGTAACCATGACAAGGTGGTCCAAGAAACACAAGGCCCTATTCACTGGTAGAGGTTCAGAAAATGTTGACAGCTGGAAAAAGAAAGAAACCAGCACTCGATCTTCATCTTGGGAAATTTCTGAACGCTCAAAGACTGTTTCGAAGTACGTCTACTTTTGCTTGCATCAATTTTGTTAATTTTTTCATCTGCTAAATAAAGGAAAATGATTTTGAACAACATTAAACCGAAATCAATGTCATATAAAGAATCTGCCAATAAGAAGTGAAGTTTTCCCGTTGAAGTCAACTCCCCCCTTCTCGCTCTGCTCTTAACCAAATGCCATGAGCTACCTTGAAATTATATGGTTGGAGTTTTTAGAATTTCTAGCGATGTATTCACTAAATTTGCTATGTTATTGGCAATGAAATGATTAAATTGAAATGCTAAGTGTGCAATCATCAGTAATCTCTCTTTATTACCACCTTTCAAATATGGTACTGATTGACCATCCTATTCAATTCAACCTAGAAAATAGAAAATTCTTTAAGTATTTGATCTGATAATTGTATTCATGCTGAGAAAACTCATATTACTGACTTAGGAATATCATCACATACATTGTTTTTAAATTGCCAGTAAATTTTGTTTGTCCCAGGGCTAAAAGGGAGGAAGCCAAAATCACCGCATGGGAAAATTTGCAAAAGGCAAAAGCTGAAGCAGCAATACAGAAACTAGAGGTAAACAAAGAACCACTTGAAGGGATTTTTATGTACAAAACCCTACTAGCTCAAGTGATCATCCAAGCAATTATTGCTCCTACATACACATATATTATCTTAAGTTTCATTTTGGGATTCTCCCTTGTTTTCTTTATTTCAGGGTGCTGAATTATTTCCCTCTTTCCCTAAGTTCAATTTCGGTCATCTATGTATTTCTGTCTATTGACTTGCTTTTACTATTGGGATAGTAAAAGTTAGTTTTCTGATCAGTGATCTCTCATCCATTATCTTAAACCGACAAGACTAGTTATGGACTAATGTCATTACTGTGGGCTGTCTAATAGGATTGTAAATGTCTTAAAGACCACTTTTTTTTACTTCATCATAAACTAATCTAACATGATGTATGAATCATATTTTTTGTTAATTCATTTCACAACCGCATGCATTAAGAATCCCTTTCTCCTTAAAAATAAAGGAAAGTAATTAGAGAAGATTGAGTGCGATCTCATTATTTTGCTATTTCAGATGAAGTTGGAAAAGAAGCGAGCATCTTCCATGGATAAGATTATGAACAAACTGAAATTCGCTCAGAAAAAGGCTCAGGAAATGAGGAGTTCAGTTTCAGTCGACCAGGCTCATCAAGTTGCCAGAACTTCTCACAAGGTTATGTCATTTCGGAGAGCCGGCCAGATGGGTTCTTTGAGTGGTTGTTTCACCTGTCATGCCTTTTAA
Protein sequence

>MS.gene24419.t1

MRDLGFHEQRRSWRRNTGSRTRNTTGNTVTGGCDTSPDSVIFTLESNLSLFSSASASVDRCSFASDAHDRDSLNSEISLHLAGHGGDFAPSESWSGPDPDPDPNQNHNRKQHADSDSVQKKKLRETLFSGKAEKTKVQKEDSDIDSEDGNQLSEFDSARNSFSLALKECQDRRSRCEALFNKQDRRRPASLDLNNANATGIGTGSSPRLVGAMKKSMVQTRKSGTGTVSGTGTFPSPGTPNYRHCQGGVAMQKGWSSERVVSGGRKQVGNGVTALCLSNGRTLPSKWEDAERWILSPVSGGDGTGRVSVPQPLRRPKSKSGPLGPPGVAYYSLYSPAGHFFDGGNFMTAASPFSAAVNASADGFTNSSGGNGGGGLPTRTDPCMARSVSVHGCSQMQGQSSIPSREEKFDAFKDAGTNVSPAVSRRDMATQMSPEGSSCSSPNMRTSFSASTPPSLPVTDLQSISFSKMDIRDVQVDERVTMTRWSKKHKALFTGRGSENVDSWKKKETSTRSSSWEISERSKTVSKAKREEAKITAWENLQKAKAEAAIQKLEMKLEKKRASSMDKIMNKLKFAQKKAQEMRSSVSVDQAHQVARTSHKVMSFRRAGQMGSLSGCFTCHAF