Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24433.t1 | XP_024639006.1 | 94 | 483 | 29 | 0 | 1 | 483 | 1 | 483 | 1.60E-257 | 898.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24433.t1 | Q94IB8 | 73.9 | 479 | 125 | 0 | 1 | 479 | 1 | 479 | 1.2e-210 | 733.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24433.t1 | A0A1S2Y419 | 91.9 | 482 | 39 | 0 | 1 | 482 | 2 | 483 | 3.4e-254 | 886.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene24433 | MS.gene70587 | PPI |
MS.gene24433 | MS.gene074392 | PPI |
MS.gene022257 | MS.gene24433 | PPI |
MS.gene25914 | MS.gene24433 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24433.t1 | MTR_3g054030 | 89.979 | 479 | 48 | 0 | 1 | 479 | 2 | 480 | 0.0 | 875 |
MS.gene24433.t1 | MTR_5g072020 | 89.770 | 479 | 49 | 0 | 1 | 479 | 2 | 480 | 0.0 | 875 |
MS.gene24433.t1 | MTR_1g018970 | 86.880 | 343 | 45 | 0 | 1 | 343 | 1 | 343 | 0.0 | 578 |
MS.gene24433.t1 | MTR_1g019030 | 93.069 | 101 | 7 | 0 | 383 | 483 | 27 | 127 | 3.15e-58 | 188 |
MS.gene24433.t1 | MTR_2g090820 | 77.049 | 122 | 16 | 1 | 340 | 449 | 15 | 136 | 7.51e-56 | 182 |
MS.gene24433.t1 | MTR_1g019000 | 90.541 | 74 | 7 | 0 | 304 | 377 | 21 | 94 | 1.14e-40 | 141 |
MS.gene24433.t1 | MTR_6g033290 | 25.326 | 383 | 256 | 8 | 110 | 478 | 101 | 467 | 1.18e-32 | 130 |
MS.gene24433.t1 | MTR_3g008020 | 22.597 | 385 | 245 | 12 | 109 | 471 | 100 | 453 | 1.07e-15 | 79.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24433.t1 | AT4G36480 | 73.904 | 479 | 125 | 0 | 1 | 479 | 1 | 479 | 0.0 | 756 |
MS.gene24433.t1 | AT4G36480 | 73.904 | 479 | 125 | 0 | 1 | 479 | 1 | 479 | 0.0 | 756 |
MS.gene24433.t1 | AT4G36480 | 74.925 | 335 | 84 | 0 | 1 | 335 | 1 | 335 | 0.0 | 546 |
MS.gene24433.t1 | AT3G48780 | 26.509 | 381 | 252 | 8 | 110 | 477 | 101 | 466 | 3.24e-34 | 134 |
MS.gene24433.t1 | AT3G48780 | 26.509 | 381 | 252 | 8 | 110 | 477 | 101 | 466 | 3.24e-34 | 134 |
MS.gene24433.t1 | AT5G23670 | 25.459 | 381 | 256 | 8 | 110 | 477 | 101 | 466 | 4.48e-33 | 131 |
MS.gene24433.t1 | AT5G23670 | 25.459 | 381 | 256 | 8 | 110 | 477 | 101 | 466 | 4.48e-33 | 131 |
MS.gene24433.t1 | AT3G48790 | 26.647 | 334 | 221 | 6 | 151 | 477 | 7 | 323 | 1.55e-26 | 110 |
MS.gene24433.t1 | AT3G48790 | 26.384 | 307 | 202 | 6 | 178 | 477 | 2 | 291 | 5.74e-20 | 90.9 |
MS.gene24433.t1 | AT5G04620 | 23.601 | 411 | 258 | 12 | 82 | 466 | 70 | 450 | 9.58e-20 | 92.4 |
MS.gene24433.t1 | AT5G04620 | 22.680 | 291 | 194 | 6 | 82 | 349 | 70 | 352 | 6.53e-18 | 86.3 |
MS.gene24433.t1 | AT5G04620 | 23.699 | 346 | 210 | 12 | 145 | 466 | 2 | 317 | 3.55e-14 | 74.3 |
Find 97 sgRNAs with CRISPR-Local
Find 370 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTCAATTCTGTACTCTTA+TGG | 0.150808 | 1.1:-3997036 | MS.gene24433:CDS |
CTTGTCCAATGTTGATCTTC+TGG | 0.236546 | 1.1:+3994648 | None:intergenic |
GAACATTACTTCCAAATATA+AGG | 0.240090 | 1.1:-3996500 | MS.gene24433:CDS |
CAATTCAATGATCTCATCTA+AGG | 0.245444 | 1.1:+3995798 | None:intergenic |
CTTCATTAAGAGAAGGAATA+AGG | 0.245598 | 1.1:+3998319 | None:intergenic |
GCAAACTATCTTGGGCTTAT+AGG | 0.246504 | 1.1:-3997352 | MS.gene24433:CDS |
TTTGGTGTGCTTGGAAGTTC+TGG | 0.252911 | 1.1:-3995730 | MS.gene24433:CDS |
ATTCAATTCTGTACTCTTAT+GGG | 0.273197 | 1.1:-3997035 | MS.gene24433:CDS |
AGATCTTATAACTGCTTCTA+TGG | 0.281324 | 1.1:-3995578 | MS.gene24433:CDS |
TGTTTCTTATGCAGTGCTGC+TGG | 0.289956 | 1.1:-3997421 | MS.gene24433:intron |
CGTGAACACTACTATAGATT+TGG | 0.297627 | 1.1:-3999599 | MS.gene24433:CDS |
CTCAAATTTGTTAACAGATT+GGG | 0.307471 | 1.1:+3995126 | None:intergenic |
TCTCATCTAAGGGTGCTATT+TGG | 0.316042 | 1.1:+3995809 | None:intergenic |
ATCTACAACTCTTGCACTTC+CGG | 0.317386 | 1.1:+3995522 | None:intergenic |
AACTTCTTTACCATTAACTA+TGG | 0.324145 | 1.1:+3997390 | None:intergenic |
TTTGCTTCAGCAAACTATCT+TGG | 0.327119 | 1.1:-3997361 | MS.gene24433:CDS |
TCGTCTGCTTTAGAGAAATA+TGG | 0.340008 | 1.1:-3997226 | MS.gene24433:CDS |
GTTCTCTAAAGTTTCTCTTA+AGG | 0.340162 | 1.1:+3996519 | None:intergenic |
GGGCCACATACCATAGTTAA+TGG | 0.344858 | 1.1:-3997400 | MS.gene24433:CDS |
CCTCAAATTTGTTAACAGAT+TGG | 0.355331 | 1.1:+3995125 | None:intergenic |
TTTAATTTCAAATAAACAAT+TGG | 0.366490 | 1.1:+3994861 | None:intergenic |
TTCATTAAGAGAAGGAATAA+GGG | 0.368868 | 1.1:+3998320 | None:intergenic |
AACATTACTTCCAAATATAA+GGG | 0.378447 | 1.1:-3996499 | MS.gene24433:CDS |
TTGCTTCAGCAAACTATCTT+GGG | 0.384774 | 1.1:-3997360 | MS.gene24433:CDS |
GGAACAACATTGCTGTGTTA+TGG | 0.388623 | 1.1:-3995104 | MS.gene24433:CDS |
AGATGAGATCATTGAATTGA+AGG | 0.398282 | 1.1:-3995794 | MS.gene24433:CDS |
ATGGCAGCGCTTGCAAGATA+TGG | 0.398789 | 1.1:+3995177 | None:intergenic |
ATTAGATTATTTGTTTCTGC+AGG | 0.402211 | 1.1:-3994607 | MS.gene24433:CDS |
CTGGATGAGAGCAACTCATT+TGG | 0.408220 | 1.1:-3995748 | MS.gene24433:CDS |
AGCAACTCATTTGGTGTGCT+TGG | 0.418751 | 1.1:-3995739 | MS.gene24433:CDS |
GAAAGAAGATTCTGTATTTG+TGG | 0.419300 | 1.1:-3994677 | MS.gene24433:CDS |
CCAATCTGTTAACAAATTTG+AGG | 0.421013 | 1.1:-3995125 | MS.gene24433:CDS |
CTGTGCTTCTAGAAAGATAA+AGG | 0.428167 | 1.1:+3996572 | None:intergenic |
AAATAAACAATTGGTGACTC+TGG | 0.449523 | 1.1:+3994870 | None:intergenic |
TAAGAGTACAGAATTGAATC+AGG | 0.459771 | 1.1:+3997039 | None:intergenic |
CAGGGATGAGGGAGTCCACT+GGG | 0.462856 | 1.1:-3996608 | MS.gene24433:CDS |
AAGGACATCAATAGCTGTAA+TGG | 0.466767 | 1.1:+3995158 | None:intergenic |
GCTGCGGCATTAGTCCTTGA+TGG | 0.470340 | 1.1:-3994538 | MS.gene24433:CDS |
ACAAATAATCTAATTCCTAC+AGG | 0.471070 | 1.1:+3994616 | None:intergenic |
TTGATGAACTATGTGATGAA+TGG | 0.477203 | 1.1:-3998353 | MS.gene24433:CDS |
AGAGGTGTCACTGAACACTA+TGG | 0.483049 | 1.1:-3995706 | MS.gene24433:CDS |
AGAGAAGGAATAAGGGGTTG+TGG | 0.488349 | 1.1:+3998327 | None:intergenic |
TTTGAAATTAAAGAAGTCTA+CGG | 0.489519 | 1.1:-3994850 | MS.gene24433:CDS |
TTACCATTAACTATGGTATG+TGG | 0.491128 | 1.1:+3997397 | None:intergenic |
TTGAAATTAAAGAAGTCTAC+GGG | 0.495926 | 1.1:-3994849 | MS.gene24433:CDS |
GACTGCATTTCTTACACGCT+CGG | 0.496128 | 1.1:+3994788 | None:intergenic |
GTTTCTTATGCAGTGCTGCT+GGG | 0.496731 | 1.1:-3997420 | MS.gene24433:intron |
TTGCAGCGGTTGAGTAGCTC+TGG | 0.503674 | 1.1:-3995225 | MS.gene24433:intron |
ACAGGGATGAGGGAGTCCAC+TGG | 0.504900 | 1.1:-3996609 | MS.gene24433:intron |
TGATGAACTATGTGATGAAT+GGG | 0.517879 | 1.1:-3998352 | MS.gene24433:CDS |
GGCGTCTGAGTCATTGCAAA+GGG | 0.523357 | 1.1:-3994560 | MS.gene24433:CDS |
GATCTTATAACTGCTTCTAT+GGG | 0.526348 | 1.1:-3995577 | MS.gene24433:CDS |
GCTTTAGAGAAATATGGTGT+TGG | 0.529087 | 1.1:-3997220 | MS.gene24433:CDS |
TGAGTCATTGCAAAGGGCTG+CGG | 0.529867 | 1.1:-3994554 | MS.gene24433:CDS |
TGTAATTACCTCTCTAGCAC+TGG | 0.543434 | 1.1:+3998279 | None:intergenic |
TTCTCGCTTCAAAGTCAAGA+TGG | 0.546769 | 1.1:+3997082 | None:intergenic |
TTGGTTCCTGTGGTCCCCGT+GGG | 0.553198 | 1.1:-3997201 | MS.gene24433:CDS |
ATAAAACCCACGGGGACCAC+AGG | 0.555797 | 1.1:+3997195 | None:intergenic |
AAAACTACAGCTCGTGCAGA+AGG | 0.556151 | 1.1:+3999556 | None:intergenic |
CAATTGTTCCATAAAACCCA+CGG | 0.560580 | 1.1:+3997185 | None:intergenic |
GGACATGCGTTGGCCACAGA+AGG | 0.561169 | 1.1:-3995556 | MS.gene24433:CDS |
TAAAAGACCCTTGTCAAACA+AGG | 0.561710 | 1.1:-3999310 | MS.gene24433:intron |
AACATTGCTGTGTTATGGAA+AGG | 0.565817 | 1.1:-3995099 | MS.gene24433:intron |
TGCTTCTATGGGACATGCGT+TGG | 0.566436 | 1.1:-3995566 | MS.gene24433:CDS |
TTAGATTATTTGTTTCTGCA+GGG | 0.571207 | 1.1:-3994606 | MS.gene24433:CDS |
GGGTTCATTTATGACCATCA+AGG | 0.574762 | 1.1:+3994524 | None:intergenic |
GTGCTTGGAAGTTCTGGAAG+AGG | 0.575580 | 1.1:-3995724 | MS.gene24433:CDS |
TGTCATTGAAGCTCTCTACC+AGG | 0.576630 | 1.1:-3996452 | MS.gene24433:intron |
GCAGGGTTGTCGAAAATACC+AGG | 0.579719 | 1.1:-3994912 | MS.gene24433:intron |
AATTCAATGATCTCATCTAA+GGG | 0.581827 | 1.1:+3995799 | None:intergenic |
AGCAGGGATAGCACTGAACA+TGG | 0.585997 | 1.1:+3997005 | None:intergenic |
CATGCGTTGGCCACAGAAGG+AGG | 0.589061 | 1.1:-3995553 | MS.gene24433:CDS |
AATTGTTCCATAAAACCCAC+GGG | 0.590052 | 1.1:+3997186 | None:intergenic |
TGACTTGCAATTGTGAAGCC+TGG | 0.591332 | 1.1:+3994894 | None:intergenic |
GTCCACTGGGGAATACAGAA+TGG | 0.593062 | 1.1:-3996595 | MS.gene24433:CDS |
ATGAACCGCCAGTGCTAGAG+AGG | 0.602412 | 1.1:-3998287 | MS.gene24433:intron |
GCAACAAACCTTGTTTGACA+AGG | 0.602533 | 1.1:+3999302 | None:intergenic |
ACAGAAGGAGGATTCTGCAC+CGG | 0.604655 | 1.1:-3995541 | MS.gene24433:CDS |
TGTGACTCTTCATTAAGAGA+AGG | 0.608867 | 1.1:+3998312 | None:intergenic |
GGTGCAGAATCCTCCTTCTG+TGG | 0.610091 | 1.1:+3995543 | None:intergenic |
AAATATGGTGTTGGTTCCTG+TGG | 0.610886 | 1.1:-3997211 | MS.gene24433:CDS |
TCATTAAGAGAAGGAATAAG+GGG | 0.615684 | 1.1:+3998321 | None:intergenic |
AGGCGTCTGAGTCATTGCAA+AGG | 0.619078 | 1.1:-3994561 | MS.gene24433:CDS |
GTTGGTTCCTGTGGTCCCCG+TGG | 0.621440 | 1.1:-3997202 | MS.gene24433:CDS |
GGCTTCCAGAAGATCAACAT+TGG | 0.624427 | 1.1:-3994653 | MS.gene24433:CDS |
CAACAAACCTTGTTTGACAA+GGG | 0.631045 | 1.1:+3999303 | None:intergenic |
AGAAGATTCTGTATTTGTGG+CGG | 0.636151 | 1.1:-3994674 | MS.gene24433:CDS |
GCAGCGCTTGCAAGATATGG+AGG | 0.640184 | 1.1:+3995180 | None:intergenic |
ACATTACTTCCAAATATAAG+GGG | 0.660136 | 1.1:-3996498 | MS.gene24433:CDS |
GACAAGTGTCGATTACCTGT+AGG | 0.662221 | 1.1:-3994631 | MS.gene24433:CDS |
TTCAGAGTCTGATCTACACA+AGG | 0.672146 | 1.1:-3994581 | MS.gene24433:CDS |
AATTACCTCTCTAGCACTGG+CGG | 0.685088 | 1.1:+3998282 | None:intergenic |
GGCCATTCTGTATTCCCCAG+TGG | 0.696448 | 1.1:+3996593 | None:intergenic |
AGGGATGAGGGAGTCCACTG+GGG | 0.708870 | 1.1:-3996607 | MS.gene24433:CDS |
TTATCTTTCTAGAAGCACAG+TGG | 0.725983 | 1.1:-3996569 | MS.gene24433:CDS |
AGGGATAGCACTGAACATGG+TGG | 0.741093 | 1.1:+3997008 | None:intergenic |
ATTGTTCCATAAAACCCACG+GGG | 0.815269 | 1.1:+3997187 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTCAATATGTATTTATAA+AGG | - | chr1.1:3998061-3998080 | MS.gene24433:intron | 10.0% |
!! | CAAAAAATTTAAGAATTTAA+AGG | + | chr1.1:3996377-3996396 | None:intergenic | 10.0% |
!!! | ATAAATTTATATCTTTTAAC+AGG | - | chr1.1:3997523-3997542 | MS.gene24433:intron | 10.0% |
!!! | ATAATTTTTGTTAAACTATA+GGG | - | chr1.1:3996175-3996194 | MS.gene24433:intron | 10.0% |
!!! | TAAATTTATATCTTTTAACA+GGG | - | chr1.1:3997524-3997543 | MS.gene24433:intron | 10.0% |
!!! | TAGCATTTTTTTTTTTAAAT+CGG | + | chr1.1:3997995-3998014 | None:intergenic | 10.0% |
!!! | TTTAATTTCAAATAAACAAT+TGG | + | chr1.1:3999292-3999311 | None:intergenic | 10.0% |
!! | AAATAACTATTACAACTTAA+TGG | + | chr1.1:3998189-3998208 | None:intergenic | 15.0% |
!! | ATTTGCTTATTTAATCAAAA+TGG | - | chr1.1:3995080-3995099 | MS.gene24433:intron | 15.0% |
!! | TAAAATGAGAAAAATATATG+AGG | + | chr1.1:3995916-3995935 | None:intergenic | 15.0% |
!! | TTATGTGAAAATAATAAAGT+TGG | - | chr1.1:3995007-3995026 | MS.gene24433:intron | 15.0% |
!! | TTCAAAAAAAAAAATTTCCT+CGG | - | chr1.1:3997268-3997287 | MS.gene24433:intron | 15.0% |
!! | TTGTAATATCTTAACATTAA+TGG | + | chr1.1:3995171-3995190 | None:intergenic | 15.0% |
!!! | AACTTTCATGTTTTATTTTA+AGG | + | chr1.1:3996219-3996238 | None:intergenic | 15.0% |
!!! | AATAAAACATGAAAGTTTTT+AGG | - | chr1.1:3996222-3996241 | MS.gene24433:intron | 15.0% |
!!! | ACTTTCATGTTTTATTTTAA+GGG | + | chr1.1:3996218-3996237 | None:intergenic | 15.0% |
!!! | ATAAAACATGAAAGTTTTTA+GGG | - | chr1.1:3996223-3996242 | MS.gene24433:intron | 15.0% |
!!! | ATTTTAATGATTTATATCAC+TGG | - | chr1.1:3997343-3997362 | MS.gene24433:CDS | 15.0% |
!!! | CATAATTTTTGTTAAACTAT+AGG | - | chr1.1:3996174-3996193 | MS.gene24433:intron | 15.0% |
!!! | CTATATTTTGAAATATAAAG+TGG | + | chr1.1:3997419-3997438 | None:intergenic | 15.0% |
!! | AAATTTAAGAATTTAAAGGG+TGG | + | chr1.1:3996373-3996392 | None:intergenic | 20.0% |
!! | AACATTACTTCCAAATATAA+GGG | - | chr1.1:3997651-3997670 | MS.gene24433:intron | 20.0% |
!! | CCAACTTAAGTAATAAAAAT+AGG | - | chr1.1:3998773-3998792 | MS.gene24433:intron | 20.0% |
!! | TATGATAAAAGAAAACAGTT+AGG | + | chr1.1:3996498-3996517 | None:intergenic | 20.0% |
!! | TCTGAAGAAAAAAAAAATCA+AGG | + | chr1.1:3998314-3998333 | None:intergenic | 20.0% |
!!! | ATATCATTTTCGTATTTTAC+TGG | - | chr1.1:3998383-3998402 | MS.gene24433:intron | 20.0% |
!!! | ATCCCATATCATTTTTTTTT+TGG | - | chr1.1:3996855-3996874 | MS.gene24433:intron | 20.0% |
!!! | ATTTCTTATTTCAGTTTTGT+TGG | - | chr1.1:3999422-3999441 | MS.gene24433:intron | 20.0% |
!!! | ATTTTGAAATATAAAGTGGA+TGG | + | chr1.1:3997415-3997434 | None:intergenic | 20.0% |
!!! | CCTATTTTTATTACTTAAGT+TGG | + | chr1.1:3998776-3998795 | None:intergenic | 20.0% |
!!! | CTGTTATTTATTATGATTTG+TGG | - | chr1.1:3998525-3998544 | MS.gene24433:intron | 20.0% |
!!! | GATCTTTGAATTTTTTATGT+TGG | - | chr1.1:3995624-3995643 | MS.gene24433:intron | 20.0% |
!!! | GCATTTGTTATATTATCAAT+GGG | - | chr1.1:3995029-3995048 | MS.gene24433:intron | 20.0% |
!!! | GGTTTTACTTCTTATTAAAA+TGG | - | chr1.1:3997364-3997383 | MS.gene24433:CDS | 20.0% |
!!! | GTTTTCTTTTATCATATGTT+GGG | - | chr1.1:3996502-3996521 | MS.gene24433:CDS | 20.0% |
!!! | TAAATTTGGAATTTTGGATT+GGG | + | chr1.1:3995418-3995437 | None:intergenic | 20.0% |
!!! | TATAGAAGTTTTACTTTTAG+TGG | - | chr1.1:3994777-3994796 | MS.gene24433:intron | 20.0% |
!!! | TCCCATATCATTTTTTTTTT+GGG | - | chr1.1:3996856-3996875 | MS.gene24433:intron | 20.0% |
!!! | TGTTTTCTTTTATCATATGT+TGG | - | chr1.1:3996501-3996520 | MS.gene24433:CDS | 20.0% |
!!! | TTAAATTTGGAATTTTGGAT+TGG | + | chr1.1:3995419-3995438 | None:intergenic | 20.0% |
!!! | TTTGAAATTAAAGAAGTCTA+CGG | - | chr1.1:3999300-3999319 | MS.gene24433:intron | 20.0% |
!!! | TTTTTTTTTCTTCAGAATTC+TGG | - | chr1.1:3998318-3998337 | MS.gene24433:CDS | 20.0% |
! | AAAGTTACTTGTAAGTTGTA+AGG | - | chr1.1:3996827-3996846 | MS.gene24433:intron | 25.0% |
! | AACCACATAAGGTAATATTA+AGG | + | chr1.1:3996023-3996042 | None:intergenic | 25.0% |
! | AACTTCTTTACCATTAACTA+TGG | + | chr1.1:3996763-3996782 | None:intergenic | 25.0% |
! | AATATAATAGCAACACAAAC+AGG | + | chr1.1:3998107-3998126 | None:intergenic | 25.0% |
! | AATTCAATGATCTCATCTAA+GGG | + | chr1.1:3998354-3998373 | None:intergenic | 25.0% |
! | ACAAATAATCTAATTCCTAC+AGG | + | chr1.1:3999537-3999556 | None:intergenic | 25.0% |
! | ACATAAGGTAATATTAAGGA+AGG | + | chr1.1:3996019-3996038 | None:intergenic | 25.0% |
! | ACATTACTTCCAAATATAAG+GGG | - | chr1.1:3997652-3997671 | MS.gene24433:intron | 25.0% |
! | ACTTTGATTCTTAGATACAT+TGG | - | chr1.1:3999210-3999229 | MS.gene24433:intron | 25.0% |
! | ATACTGAACATAAAATGAGA+GGG | - | chr1.1:3998708-3998727 | MS.gene24433:intron | 25.0% |
! | ATTCAATTCTGTACTCTTAT+GGG | - | chr1.1:3997115-3997134 | MS.gene24433:intron | 25.0% |
! | GAACATTACTTCCAAATATA+AGG | - | chr1.1:3997650-3997669 | MS.gene24433:intron | 25.0% |
! | GCCCAAAAAAAAAATGATAT+GGG | + | chr1.1:3996860-3996879 | None:intergenic | 25.0% |
! | GTTATCAAGTATAATGTCAT+CGG | + | chr1.1:3997303-3997322 | None:intergenic | 25.0% |
! | TAATGTACATTTGTCTATTG+TGG | - | chr1.1:3995225-3995244 | MS.gene24433:intron | 25.0% |
! | TATACTGAACATAAAATGAG+AGG | - | chr1.1:3998707-3998726 | MS.gene24433:intron | 25.0% |
! | TATATTATCAATGGGACTTT+AGG | - | chr1.1:3995037-3995056 | MS.gene24433:intron | 25.0% |
! | TATTTAATCAAAATGGTAGC+CGG | - | chr1.1:3995087-3995106 | MS.gene24433:intron | 25.0% |
! | TGCCCAAAAAAAAAATGATA+TGG | + | chr1.1:3996861-3996880 | None:intergenic | 25.0% |
! | TTCATTAAGAGAAGGAATAA+GGG | + | chr1.1:3995833-3995852 | None:intergenic | 25.0% |
! | TTCCTTAATATTACCTTATG+TGG | - | chr1.1:3996018-3996037 | MS.gene24433:intron | 25.0% |
! | TTGAAATTAAAGAAGTCTAC+GGG | - | chr1.1:3999301-3999320 | MS.gene24433:intron | 25.0% |
!! | AATATAACGCCTCAAATTTT+TGG | + | chr1.1:3997679-3997698 | None:intergenic | 25.0% |
!! | AATCTTGTTCAATTTTTCCT+CGG | - | chr1.1:3997235-3997254 | MS.gene24433:CDS | 25.0% |
!! | CAAAATTCCAAATTTAAGAC+TGG | - | chr1.1:3995422-3995441 | MS.gene24433:intron | 25.0% |
!! | CATTAAAATAGTTCTACATG+TGG | + | chr1.1:3997332-3997351 | None:intergenic | 25.0% |
!! | CATTTTATGTTCAGTATACA+TGG | + | chr1.1:3998705-3998724 | None:intergenic | 25.0% |
!! | TGTTTGTGTTGCTATTATAT+TGG | - | chr1.1:3998106-3998125 | MS.gene24433:intron | 25.0% |
!! | TTACGATGTTTTATAAAGCT+CGG | - | chr1.1:3995474-3995493 | MS.gene24433:intron | 25.0% |
!! | TTTTTGTTAAACTATAGGGT+TGG | - | chr1.1:3996179-3996198 | MS.gene24433:intron | 25.0% |
!!! | AAAAAATTTCCTCGGTTTTT+TGG | - | chr1.1:3997276-3997295 | MS.gene24433:intron | 25.0% |
!!! | AAAATCCTTGTTTTAATTGC+AGG | + | chr1.1:3999179-3999198 | None:intergenic | 25.0% |
!!! | ATTAGATTATTTGTTTCTGC+AGG | - | chr1.1:3999543-3999562 | MS.gene24433:CDS | 25.0% |
!!! | CAGTCTTAAATTTGGAATTT+TGG | + | chr1.1:3995424-3995443 | None:intergenic | 25.0% |
!!! | CTCAAATTTGTTAACAGATT+GGG | + | chr1.1:3999027-3999046 | None:intergenic | 25.0% |
!!! | GCGAGAATATCAAATTTTTT+AGG | - | chr1.1:3997084-3997103 | MS.gene24433:CDS | 25.0% |
!!! | GGCATTTGTTATATTATCAA+TGG | - | chr1.1:3995028-3995047 | MS.gene24433:intron | 25.0% |
!!! | GTAGTTTTTGGATTCAATAT+TGG | - | chr1.1:3994609-3994628 | MS.gene24433:CDS | 25.0% |
!!! | TACCTTATGTTTTGATTTGA+AGG | - | chr1.1:3994745-3994764 | MS.gene24433:intron | 25.0% |
!!! | TCATGTTTTATTTTAAGGGT+CGG | + | chr1.1:3996214-3996233 | None:intergenic | 25.0% |
!!! | TTAGATTATTTGTTTCTGCA+GGG | - | chr1.1:3999544-3999563 | MS.gene24433:CDS | 25.0% |
AAAAATTACTGTCTAGACTC+TGG | - | chr1.1:3995668-3995687 | MS.gene24433:intron | 30.0% | |
AAACATTGAGATATTAGAGC+AGG | + | chr1.1:3998899-3998918 | None:intergenic | 30.0% | |
AACATTGAGATATTAGAGCA+GGG | + | chr1.1:3998898-3998917 | None:intergenic | 30.0% | |
AAGATCCACAGTCTTAAATT+TGG | + | chr1.1:3995549-3995568 | None:intergenic | 30.0% | |
AATTTGTGCTTAATGTCTGT+AGG | - | chr1.1:3995771-3995790 | MS.gene24433:CDS | 30.0% | |
ACATTTCCTTGTCCTAAAAA+GGG | - | chr1.1:3996084-3996103 | MS.gene24433:intron | 30.0% | |
ACCAAGTATGGTATTGTTAT+GGG | - | chr1.1:3998652-3998671 | MS.gene24433:intron | 30.0% | |
ACTTAATGGTTGAAAAAACC+AGG | + | chr1.1:3998175-3998194 | None:intergenic | 30.0% | |
ACTTAATGTTCTGTATTCAC+AGG | - | chr1.1:3999446-3999465 | MS.gene24433:intron | 30.0% | |
ACTTGTGAACTTTGTTCTTA+TGG | - | chr1.1:3996047-3996066 | MS.gene24433:intron | 30.0% | |
AGATCTTATAACTGCTTCTA+TGG | - | chr1.1:3998572-3998591 | MS.gene24433:intron | 30.0% | |
AGATGAGATCATTGAATTGA+AGG | - | chr1.1:3998356-3998375 | MS.gene24433:CDS | 30.0% | |
ATATATGCAAGCTAAACAGT+AGG | - | chr1.1:3996656-3996675 | MS.gene24433:intron | 30.0% | |
ATGTGGTGTTTATAAAGCTT+GGG | - | chr1.1:3995350-3995369 | MS.gene24433:intron | 30.0% | |
CAAGTAGCAAAAGTCATTTA+AGG | + | chr1.1:3998151-3998170 | None:intergenic | 30.0% | |
CAATTCAATGATCTCATCTA+AGG | + | chr1.1:3998355-3998374 | None:intergenic | 30.0% | |
CAGTAAATTGTGCTATATGA+CGG | - | chr1.1:3997857-3997876 | MS.gene24433:intron | 30.0% | |
CCAATCTGTTAACAAATTTG+AGG | - | chr1.1:3999025-3999044 | MS.gene24433:intron | 30.0% | |
CTAATTCAACCTTACAAAAC+CGG | + | chr1.1:3995519-3995538 | None:intergenic | 30.0% | |
CTTAATGGTTGAAAAAACCA+GGG | + | chr1.1:3998174-3998193 | None:intergenic | 30.0% | |
CTTCATTAAGAGAAGGAATA+AGG | + | chr1.1:3995834-3995853 | None:intergenic | 30.0% | |
CTTGTGAACTTTGTTCTTAT+GGG | - | chr1.1:3996048-3996067 | MS.gene24433:intron | 30.0% | |
GAAAGAAGATTCTGTATTTG+TGG | - | chr1.1:3999473-3999492 | MS.gene24433:intron | 30.0% | |
GATCTTATAACTGCTTCTAT+GGG | - | chr1.1:3998573-3998592 | MS.gene24433:intron | 30.0% | |
GATTCAATTCTGTACTCTTA+TGG | - | chr1.1:3997114-3997133 | MS.gene24433:intron | 30.0% | |
GTAAGATCCAGTCTTAAATT+TGG | + | chr1.1:3995432-3995451 | None:intergenic | 30.0% | |
GTATACATGGAAATCAAAGA+TGG | + | chr1.1:3998692-3998711 | None:intergenic | 30.0% | |
GTCCTTCAAATCAAAACATA+AGG | + | chr1.1:3994750-3994769 | None:intergenic | 30.0% | |
TACATTTCCTTGTCCTAAAA+AGG | - | chr1.1:3996083-3996102 | MS.gene24433:intron | 30.0% | |
TATGTGGTGTTTATAAAGCT+TGG | - | chr1.1:3995349-3995368 | MS.gene24433:intron | 30.0% | |
TCATTAAGAGAAGGAATAAG+GGG | + | chr1.1:3995832-3995851 | None:intergenic | 30.0% | |
TGATGAACTATGTGATGAAT+GGG | - | chr1.1:3995798-3995817 | MS.gene24433:CDS | 30.0% | |
TGTGACATTGAAAACAAGAA+GGG | + | chr1.1:3996469-3996488 | None:intergenic | 30.0% | |
TTACCATTAACTATGGTATG+TGG | + | chr1.1:3996756-3996775 | None:intergenic | 30.0% | |
TTGATGAACTATGTGATGAA+TGG | - | chr1.1:3995797-3995816 | MS.gene24433:CDS | 30.0% | |
! | AAATAAACAATTGGTGACTC+TGG | + | chr1.1:3999283-3999302 | None:intergenic | 30.0% |
! | AGAGGTAATTACATTTTCTC+TGG | - | chr1.1:3995881-3995900 | MS.gene24433:intron | 30.0% |
! | AGCTTTATAAACACCACATA+AGG | + | chr1.1:3995349-3995368 | None:intergenic | 30.0% |
! | AGGCGTTGTTTATATAAATC+TGG | - | chr1.1:3997473-3997492 | MS.gene24433:intron | 30.0% |
! | ATATCTTTTAACAGGGATGA+GGG | - | chr1.1:3997531-3997550 | MS.gene24433:intron | 30.0% |
! | ATTTAAGACTGGATCTTACA+TGG | - | chr1.1:3995433-3995452 | MS.gene24433:intron | 30.0% |
! | GATCTTAAAGTTTGTTCTTG+AGG | - | chr1.1:3996997-3997016 | MS.gene24433:CDS | 30.0% |
! | GTTTTATGGAACAATTGGTA+AGG | - | chr1.1:3996971-3996990 | MS.gene24433:intron | 30.0% |
! | TAAGAGTACAGAATTGAATC+AGG | + | chr1.1:3997114-3997133 | None:intergenic | 30.0% |
! | TATATCTTTTAACAGGGATG+AGG | - | chr1.1:3997530-3997549 | MS.gene24433:intron | 30.0% |
! | TCAATCCAAATTTAAGACTG+TGG | - | chr1.1:3995541-3995560 | MS.gene24433:CDS | 30.0% |
! | TTTAAGACTGGATCTTACAT+GGG | - | chr1.1:3995434-3995453 | MS.gene24433:intron | 30.0% |
! | TTTTGAACAAGAAAAAACCG+AGG | + | chr1.1:3997255-3997274 | None:intergenic | 30.0% |
!! | ATTACTTAAGTTGGAGTCTA+AGG | + | chr1.1:3998767-3998786 | None:intergenic | 30.0% |
!! | CCTCAAATTTGTTAACAGAT+TGG | + | chr1.1:3999028-3999047 | None:intergenic | 30.0% |
!! | CTGATTGCTTTTAAACCTAA+AGG | + | chr1.1:3997799-3997818 | None:intergenic | 30.0% |
!! | GTTCTCTAAAGTTTCTCTTA+AGG | + | chr1.1:3997634-3997653 | None:intergenic | 30.0% |
!! | GTTTTTGGATTCAATATTGG+TGG | - | chr1.1:3994612-3994631 | MS.gene24433:CDS | 30.0% |
!! | TTTTTAGTAGTTCTGTGTGT+TGG | - | chr1.1:3995248-3995267 | MS.gene24433:intron | 30.0% |
!!! | ATCATTTTTTTTTTGGGCAC+TGG | - | chr1.1:3996862-3996881 | MS.gene24433:intron | 30.0% |
!!! | ATTTTTGGTCCCCTTATATT+TGG | + | chr1.1:3997664-3997683 | None:intergenic | 30.0% |
!!! | TAGGATTACAGTTTTGACTT+TGG | - | chr1.1:3996622-3996641 | MS.gene24433:intron | 30.0% |
!!! | TCATTTTTTTTTTGGGCACT+GGG | - | chr1.1:3996863-3996882 | MS.gene24433:intron | 30.0% |
AACATTGCTGTGTTATGGAA+AGG | - | chr1.1:3999051-3999070 | MS.gene24433:intron | 35.0% | |
AAGACTGTGGATCTTACATA+GGG | - | chr1.1:3995554-3995573 | MS.gene24433:CDS | 35.0% | |
AAGCTCTCATGTGATTTCAT+AGG | - | chr1.1:3996431-3996450 | MS.gene24433:intron | 35.0% | |
AAGGACATCAATAGCTGTAA+TGG | + | chr1.1:3998995-3999014 | None:intergenic | 35.0% | |
AATTGTTCCATAAAACCCAC+GGG | + | chr1.1:3996967-3996986 | None:intergenic | 35.0% | |
AGAAGATTCTGTATTTGTGG+CGG | - | chr1.1:3999476-3999495 | MS.gene24433:intron | 35.0% | |
AGTCCTACAGACAGTAAATA+CGG | + | chr1.1:3996899-3996918 | None:intergenic | 35.0% | |
ATAAATCTGGTGTTTCAAGC+AGG | - | chr1.1:3997486-3997505 | MS.gene24433:intron | 35.0% | |
ATAAGGGGACCAAAAATTTG+AGG | - | chr1.1:3997667-3997686 | MS.gene24433:intron | 35.0% | |
CAATTGTTCCATAAAACCCA+CGG | + | chr1.1:3996968-3996987 | None:intergenic | 35.0% | |
CACAAGTACAAAACCACATA+AGG | + | chr1.1:3996034-3996053 | None:intergenic | 35.0% | |
CACCAAGTATGGTATTGTTA+TGG | - | chr1.1:3998651-3998670 | MS.gene24433:intron | 35.0% | |
CATCATGCAAGTGAAACATT+AGG | - | chr1.1:3996603-3996622 | MS.gene24433:CDS | 35.0% | |
CATCTATACAGTGTTTCCAA+TGG | - | chr1.1:3997762-3997781 | MS.gene24433:intron | 35.0% | |
CGTGAACACTACTATAGATT+TGG | - | chr1.1:3994551-3994570 | MS.gene24433:CDS | 35.0% | |
CTAAGTCAACCTTACAAAAC+CGG | + | chr1.1:3995394-3995413 | None:intergenic | 35.0% | |
CTTTGCCTGCAATTAAAACA+AGG | - | chr1.1:3999171-3999190 | MS.gene24433:intron | 35.0% | |
GAAAGTAACTGTCAGATCAA+AGG | + | chr1.1:3999080-3999099 | None:intergenic | 35.0% | |
GAATTGTACAAGAACCAACA+TGG | + | chr1.1:3995713-3995732 | None:intergenic | 35.0% | |
GTGACATTGAAAACAAGAAG+GGG | + | chr1.1:3996468-3996487 | None:intergenic | 35.0% | |
GTGTGACATTGAAAACAAGA+AGG | + | chr1.1:3996470-3996489 | None:intergenic | 35.0% | |
TAAAAGACCCTTGTCAAACA+AGG | - | chr1.1:3994840-3994859 | MS.gene24433:CDS | 35.0% | |
TAAGACTGTGGATCTTACAT+AGG | - | chr1.1:3995553-3995572 | MS.gene24433:CDS | 35.0% | |
TCCCATAACAATACCATACT+TGG | + | chr1.1:3998656-3998675 | None:intergenic | 35.0% | |
TGACATTGAAAACAAGAAGG+GGG | + | chr1.1:3996467-3996486 | None:intergenic | 35.0% | |
TGATCAACTTAACCCTGTTA+TGG | + | chr1.1:3996307-3996326 | None:intergenic | 35.0% | |
TGTGACTCTTCATTAAGAGA+AGG | + | chr1.1:3995841-3995860 | None:intergenic | 35.0% | |
TTGCTTCAGCAAACTATCTT+GGG | - | chr1.1:3996790-3996809 | MS.gene24433:intron | 35.0% | |
TTTGCTTCAGCAAACTATCT+TGG | - | chr1.1:3996789-3996808 | MS.gene24433:intron | 35.0% | |
! | AAAACCGGCTTATAAGGTAA+GGG | + | chr1.1:3995504-3995523 | None:intergenic | 35.0% |
! | ACAGAGTTTTCAGTACATAC+TGG | + | chr1.1:3998474-3998493 | None:intergenic | 35.0% |
! | ACAGATTGGGATTTTCATCA+AGG | + | chr1.1:3999014-3999033 | None:intergenic | 35.0% |
! | ATAGTTCTACATGTGGTATC+TGG | + | chr1.1:3997325-3997344 | None:intergenic | 35.0% |
! | ATCCCTGCTTTCTCTAAAAA+AGG | - | chr1.1:3997159-3997178 | MS.gene24433:intron | 35.0% |
! | CAACAAACCTTGTTTGACAA+GGG | + | chr1.1:3994850-3994869 | None:intergenic | 35.0% |
! | CTGTGCTTCTAGAAAGATAA+AGG | + | chr1.1:3997581-3997600 | None:intergenic | 35.0% |
! | GGTAATTACATTTTCTCTGG+AGG | - | chr1.1:3995884-3995903 | MS.gene24433:intron | 35.0% |
! | TAGCAAGAGCTACTCTTTTT+GGG | + | chr1.1:3998839-3998858 | None:intergenic | 35.0% |
! | TAGTTCTGTGTGTTGGAAAT+AGG | - | chr1.1:3995255-3995274 | MS.gene24433:intron | 35.0% |
! | TTAGCAAGAGCTACTCTTTT+TGG | + | chr1.1:3998840-3998859 | None:intergenic | 35.0% |
! | TTATCTTTCTAGAAGCACAG+TGG | - | chr1.1:3997581-3997600 | MS.gene24433:intron | 35.0% |
! | TTGTTTGACAAGGGTCTTTT+AGG | + | chr1.1:3994841-3994860 | None:intergenic | 35.0% |
!! | ATGAATGTGTGTTACTTCTG+TGG | - | chr1.1:3994945-3994964 | MS.gene24433:intron | 35.0% |
!! | CGGTTTTGTAAGGTTGAATT+AGG | - | chr1.1:3995517-3995536 | MS.gene24433:CDS | 35.0% |
!! | GCTTTAGAGAAATATGGTGT+TGG | - | chr1.1:3996930-3996949 | MS.gene24433:intron | 35.0% |
!! | TCGTCTGCTTTAGAGAAATA+TGG | - | chr1.1:3996924-3996943 | MS.gene24433:intron | 35.0% |
!!! | AATTTTAGTTTGCATGCAGC+AGG | + | chr1.1:3998262-3998281 | None:intergenic | 35.0% |
!!! | CTCCTTTTTTAGAGAAAGCA+GGG | + | chr1.1:3997164-3997183 | None:intergenic | 35.0% |
!!! | CTTGTTTTAATTGCAGGCAA+AGG | + | chr1.1:3999173-3999192 | None:intergenic | 35.0% |
!!! | TCTCCTTTTTTAGAGAAAGC+AGG | + | chr1.1:3997165-3997184 | None:intergenic | 35.0% |
!!! | TTACAGTTTTGACTTTGGAC+AGG | - | chr1.1:3996627-3996646 | MS.gene24433:intron | 35.0% |
AACAAGACTCCCATTGTAGT+GGG | + | chr1.1:3996343-3996362 | None:intergenic | 40.0% | |
AAGAGTAGCTCTTGCTAACT+TGG | - | chr1.1:3998842-3998861 | MS.gene24433:intron | 40.0% | |
ACAACCCTTACCTTATAAGC+CGG | - | chr1.1:3995497-3995516 | MS.gene24433:intron | 40.0% | |
ACCACATAAGGCATATCTCA+AGG | + | chr1.1:3995337-3995356 | None:intergenic | 40.0% | |
ACTTTGTTCTTATGGGCTTG+TGG | - | chr1.1:3996055-3996074 | MS.gene24433:intron | 40.0% | |
AGAACCAACATGGAACGATA+TGG | + | chr1.1:3995703-3995722 | None:intergenic | 40.0% | |
ATCTACAACTCTTGCACTTC+CGG | + | chr1.1:3998631-3998650 | None:intergenic | 40.0% | |
ATGCAAACTAGAGGAAAAGC+CGG | + | chr1.1:3995109-3995128 | None:intergenic | 40.0% | |
ATTATGCCACGCTCATCATT+TGG | - | chr1.1:3996118-3996137 | MS.gene24433:intron | 40.0% | |
ATTGTTCCATAAAACCCACG+GGG | + | chr1.1:3996966-3996985 | None:intergenic | 40.0% | |
CAAAGTCAAGATGGACATCT+GGG | + | chr1.1:3997062-3997081 | None:intergenic | 40.0% | |
CTAACCATATCGTTCCATGT+TGG | - | chr1.1:3995696-3995715 | MS.gene24433:intron | 40.0% | |
CTGATGACTATCAAGGCATA+TGG | - | chr1.1:3996147-3996166 | MS.gene24433:intron | 40.0% | |
CTTGTCCAATGTTGATCTTC+TGG | + | chr1.1:3999505-3999524 | None:intergenic | 40.0% | |
GAAAAGCAACATGAGGGAAA+GGG | + | chr1.1:3997034-3997053 | None:intergenic | 40.0% | |
GAGAGGGAAGATTGTAAATG+TGG | - | chr1.1:3998724-3998743 | MS.gene24433:intron | 40.0% | |
GAGATATTAGAGCAGGGAAA+TGG | + | chr1.1:3998892-3998911 | None:intergenic | 40.0% | |
GAGTTGTAGATCACCAAGTA+TGG | - | chr1.1:3998640-3998659 | MS.gene24433:intron | 40.0% | |
GCAAACTATCTTGGGCTTAT+AGG | - | chr1.1:3996798-3996817 | MS.gene24433:intron | 40.0% | |
GGAACAACATTGCTGTGTTA+TGG | - | chr1.1:3999046-3999065 | MS.gene24433:intron | 40.0% | |
GTTGGAAATAGGCTTCATTG+CGG | - | chr1.1:3995266-3995285 | MS.gene24433:intron | 40.0% | |
TAACTTCGCATGCAAACTAG+AGG | + | chr1.1:3995118-3995137 | None:intergenic | 40.0% | |
TATGTTGTGCGGTTGAAAAG+TGG | - | chr1.1:3995139-3995158 | MS.gene24433:CDS | 40.0% | |
TCAAAGTCAAGATGGACATC+TGG | + | chr1.1:3997063-3997082 | None:intergenic | 40.0% | |
TGAAAACTCTGTTCTAGCGT+GGG | - | chr1.1:3998482-3998501 | MS.gene24433:intron | 40.0% | |
TGCGAAGTTAGTATGTTGTG+CGG | - | chr1.1:3995128-3995147 | MS.gene24433:CDS | 40.0% | |
TGTAATTACCTCTCTAGCAC+TGG | + | chr1.1:3995874-3995893 | None:intergenic | 40.0% | |
TTCAGAGTCTGATCTACACA+AGG | - | chr1.1:3999569-3999588 | MS.gene24433:CDS | 40.0% | |
TTCTCGCTTCAAAGTCAAGA+TGG | + | chr1.1:3997071-3997090 | None:intergenic | 40.0% | |
TTGCAGTAGTGTCCATGATT+TGG | - | chr1.1:3999115-3999134 | MS.gene24433:intron | 40.0% | |
TTGTCCTAAAAAGGGTCAGT+TGG | - | chr1.1:3996092-3996111 | MS.gene24433:intron | 40.0% | |
TTTGTGCACAAGCCAAATCA+TGG | + | chr1.1:3999130-3999149 | None:intergenic | 40.0% | |
! | CAAAACCGGCTTATAAGGTA+AGG | + | chr1.1:3995505-3995524 | None:intergenic | 40.0% |
! | CAATGTTTTCAACCTTGCAG+CGG | - | chr1.1:3998911-3998930 | MS.gene24433:intron | 40.0% |
! | CCTTACAAAACCGGCTTATA+AGG | + | chr1.1:3995385-3995404 | None:intergenic | 40.0% |
! | CTGACAGTTACTTTCGTTGA+TGG | - | chr1.1:3999085-3999104 | MS.gene24433:intron | 40.0% |
! | GCAACAAACCTTGTTTGACA+AGG | + | chr1.1:3994851-3994870 | None:intergenic | 40.0% |
! | TAGATACATTGGCTACTGCA+GGG | - | chr1.1:3999221-3999240 | MS.gene24433:intron | 40.0% |
! | TGTGTTTACTGCTGATAACG+AGG | - | chr1.1:3996706-3996725 | MS.gene24433:intron | 40.0% |
! | TTAGATACATTGGCTACTGC+AGG | - | chr1.1:3999220-3999239 | MS.gene24433:intron | 40.0% |
! | TTAGCCAACTGACCCTTTTT+AGG | + | chr1.1:3996099-3996118 | None:intergenic | 40.0% |
! | TTTGACAAGGGTCTTTTAGG+AGG | + | chr1.1:3994838-3994857 | None:intergenic | 40.0% |
!! | AAATATGGTGTTGGTTCCTG+TGG | - | chr1.1:3996939-3996958 | MS.gene24433:intron | 40.0% |
!! | AGCTTTGCTCTGGCTTTAAT+TGG | - | chr1.1:3997909-3997928 | MS.gene24433:intron | 40.0% |
!! | CCTTATAAGCCGGTTTTGTA+AGG | - | chr1.1:3995382-3995401 | MS.gene24433:intron | 40.0% |
!! | CGGTTTTGTAAGGTTGACTT+AGG | - | chr1.1:3995392-3995411 | MS.gene24433:intron | 40.0% |
!! | CGTGGGTTTTATGGAACAAT+TGG | - | chr1.1:3996966-3996985 | MS.gene24433:intron | 40.0% |
!! | CTTGCTAACTTGGTTGATGA+TGG | - | chr1.1:3998852-3998871 | MS.gene24433:intron | 40.0% |
!! | GCTTTGCTCTGGCTTTAATT+GGG | - | chr1.1:3997910-3997929 | MS.gene24433:intron | 40.0% |
!! | TAAGTTGATCAGACTCTACC+TGG | - | chr1.1:3996316-3996335 | MS.gene24433:intron | 40.0% |
!! | TCTCATCTAAGGGTGCTATT+TGG | + | chr1.1:3998344-3998363 | None:intergenic | 40.0% |
!!! | AACTGACCCTTTTTAGGACA+AGG | + | chr1.1:3996093-3996112 | None:intergenic | 40.0% |
AAAACTACAGCTCGTGCAGA+AGG | + | chr1.1:3994597-3994616 | None:intergenic | 45.0% | |
ACCAATCCCACCATCCATTA+GGG | + | chr1.1:3997941-3997960 | None:intergenic | 45.0% | |
AGAGAAGGAATAAGGGGTTG+TGG | + | chr1.1:3995826-3995845 | None:intergenic | 45.0% | |
AGCCAGAGCAAAGCTCTATA+TGG | + | chr1.1:3997904-3997923 | None:intergenic | 45.0% | |
CACTTGTACCAGCTGATCAA+TGG | - | chr1.1:3997450-3997469 | MS.gene24433:intron | 45.0% | |
CCAGGTAGATCTTGTCTTTC+AGG | - | chr1.1:3997716-3997735 | MS.gene24433:intron | 45.0% | |
CCGCAAGTTGCAAGAAAAAG+CGG | + | chr1.1:3997834-3997853 | None:intergenic | 45.0% | |
CCTGAAAGACAAGATCTACC+TGG | + | chr1.1:3997719-3997738 | None:intergenic | 45.0% | |
CTGAAAACTCTGTTCTAGCG+TGG | - | chr1.1:3998481-3998500 | MS.gene24433:intron | 45.0% | |
CTGGATGAGAGCAACTCATT+TGG | - | chr1.1:3998402-3998421 | MS.gene24433:intron | 45.0% | |
GAACAAGACTCCCATTGTAG+TGG | + | chr1.1:3996344-3996363 | None:intergenic | 45.0% | |
GACTGCATTTCTTACACGCT+CGG | + | chr1.1:3999365-3999384 | None:intergenic | 45.0% | |
GATTTGTGGTTGTGTTCTGC+AGG | - | chr1.1:3998539-3998558 | MS.gene24433:intron | 45.0% | |
GCAGAGGAAAAGCAACATGA+GGG | + | chr1.1:3997040-3997059 | None:intergenic | 45.0% | |
GCCTTGAGATATGCCTTATG+TGG | - | chr1.1:3995333-3995352 | MS.gene24433:intron | 45.0% | |
GGAAAAGCAACATGAGGGAA+AGG | + | chr1.1:3997035-3997054 | None:intergenic | 45.0% | |
GGCATATCTCAAGGCAATGA+AGG | + | chr1.1:3995328-3995347 | None:intergenic | 45.0% | |
GGCTTCCAGAAGATCAACAT+TGG | - | chr1.1:3999497-3999516 | MS.gene24433:intron | 45.0% | |
GGGCCACATACCATAGTTAA+TGG | - | chr1.1:3996750-3996769 | MS.gene24433:intron | 45.0% | |
GTCCATATAGAGCTTTGCTC+TGG | - | chr1.1:3997899-3997918 | MS.gene24433:intron | 45.0% | |
TGGCCGTATTTACTGTCTGT+AGG | - | chr1.1:3996893-3996912 | MS.gene24433:intron | 45.0% | |
TGGTAGTCATGGCCATAACA+GGG | - | chr1.1:3996292-3996311 | MS.gene24433:intron | 45.0% | |
TGTCATTGAAGCTCTCTACC+AGG | - | chr1.1:3997698-3997717 | MS.gene24433:intron | 45.0% | |
TGTTTCTTATGCAGTGCTGC+TGG | - | chr1.1:3996729-3996748 | MS.gene24433:intron | 45.0% | |
TTAAATCGGTATCCAGCCCA+AGG | + | chr1.1:3997981-3998000 | None:intergenic | 45.0% | |
TTAATTGGGATCCCCCCTAA+TGG | - | chr1.1:3997924-3997943 | MS.gene24433:intron | 45.0% | |
TTGTACCAGCTGATCAATGG+AGG | - | chr1.1:3997453-3997472 | MS.gene24433:intron | 45.0% | |
! | AAAACCGGCTTATAAGGCGA+GGG | + | chr1.1:3995379-3995398 | None:intergenic | 45.0% |
! | AAGTTTTCTACCTCGTGACC+TGG | - | chr1.1:3996272-3996291 | MS.gene24433:intron | 45.0% |
! | AATTACCTCTCTAGCACTGG+CGG | + | chr1.1:3995871-3995890 | None:intergenic | 45.0% |
! | ATGACGGTGCCAATTTCTGT+GGG | - | chr1.1:3997873-3997892 | MS.gene24433:intron | 45.0% |
! | CTTGCTAACTTGTGCCCTAA+GGG | - | chr1.1:3998799-3998818 | MS.gene24433:intron | 45.0% |
! | GTTTCTTATGCAGTGCTGCT+GGG | - | chr1.1:3996730-3996749 | MS.gene24433:intron | 45.0% |
! | TACAATGTGCCACTATGCCA+GGG | + | chr1.1:3996253-3996272 | None:intergenic | 45.0% |
! | TATGACGGTGCCAATTTCTG+TGG | - | chr1.1:3997872-3997891 | MS.gene24433:intron | 45.0% |
! | TCTGCACGAGCTGTAGTTTT+TGG | - | chr1.1:3994597-3994616 | MS.gene24433:CDS | 45.0% |
! | TGACTTGCAATTGTGAAGCC+TGG | + | chr1.1:3999259-3999278 | None:intergenic | 45.0% |
! | TTACAATGTGCCACTATGCC+AGG | + | chr1.1:3996254-3996273 | None:intergenic | 45.0% |
! | TTTGGTGTGCTTGGAAGTTC+TGG | - | chr1.1:3998420-3998439 | MS.gene24433:intron | 45.0% |
!! | AGAGGTGTCACTGAACACTA+TGG | - | chr1.1:3998444-3998463 | MS.gene24433:intron | 45.0% |
!! | AGCAACTCATTTGGTGTGCT+TGG | - | chr1.1:3998411-3998430 | MS.gene24433:intron | 45.0% |
!! | ATGACTTTTGCTACTTGCCC+TGG | - | chr1.1:3998154-3998173 | MS.gene24433:intron | 45.0% |
!! | ATGGACTAGCCCACAGAAAT+TGG | + | chr1.1:3997885-3997904 | None:intergenic | 45.0% |
!! | GACAAGTGTCGATTACCTGT+AGG | - | chr1.1:3999519-3999538 | MS.gene24433:intron | 45.0% |
!! | GTGAGTGCTGATGACTATCA+AGG | - | chr1.1:3996140-3996159 | MS.gene24433:intron | 45.0% |
!! | TGTGTGTTACTTCTGTGGAG+TGG | - | chr1.1:3994950-3994969 | MS.gene24433:intron | 45.0% |
!!! | CCGCTTTTTCTTGCAACTTG+CGG | - | chr1.1:3997831-3997850 | MS.gene24433:intron | 45.0% |
!! | AAAAAATTTAAGAATTTAAA+GGG | + | chr1.1:3996376-3996395 | None:intergenic | 5.0% |
AAAGGTTGTGAGCGCTCCAT+TGG | + | chr1.1:3997781-3997800 | None:intergenic | 50.0% | |
AATCCCACCATCCATTAGGG+GGG | + | chr1.1:3997938-3997957 | None:intergenic | 50.0% | |
AATGCCGCAATTAGGCTGCT+AGG | + | chr1.1:3995298-3995317 | None:intergenic | 50.0% | |
ACAGAAGGAGGATTCTGCAC+CGG | - | chr1.1:3998609-3998628 | MS.gene24433:intron | 50.0% | |
AGCAGCCTAATTGCGGCATT+TGG | - | chr1.1:3995298-3995317 | MS.gene24433:intron | 50.0% | |
AGGCGTCTGAGTCATTGCAA+AGG | - | chr1.1:3999589-3999608 | MS.gene24433:CDS | 50.0% | |
ATGCCGCAATTAGGCTGCTA+GGG | + | chr1.1:3995297-3995316 | None:intergenic | 50.0% | |
ATGGCAGCGCTTGCAAGATA+TGG | + | chr1.1:3998976-3998995 | None:intergenic | 50.0% | |
CAACATGAGGGAAAGGGAAC+GGG | + | chr1.1:3997028-3997047 | None:intergenic | 50.0% | |
CAATCCCACCATCCATTAGG+GGG | + | chr1.1:3997939-3997958 | None:intergenic | 50.0% | |
CACTCACCAAATGATGAGCG+TGG | + | chr1.1:3996127-3996146 | None:intergenic | 50.0% | |
CCAATCCCACCATCCATTAG+GGG | + | chr1.1:3997940-3997959 | None:intergenic | 50.0% | |
CCTTAGGGCACAAGTTAGCA+AGG | + | chr1.1:3998801-3998820 | None:intergenic | 50.0% | |
CTACCTGGACCCACTACAAT+GGG | - | chr1.1:3996331-3996350 | MS.gene24433:intron | 50.0% | |
CTGGTAGTCATGGCCATAAC+AGG | - | chr1.1:3996291-3996310 | MS.gene24433:intron | 50.0% | |
CTGTTATGGCCATGACTACC+AGG | + | chr1.1:3996293-3996312 | None:intergenic | 50.0% | |
GACCAATCCCACCATCCATT+AGG | + | chr1.1:3997942-3997961 | None:intergenic | 50.0% | |
GCAACATGAGGGAAAGGGAA+CGG | + | chr1.1:3997029-3997048 | None:intergenic | 50.0% | |
GCAACCCAAATGCCGCAATT+AGG | + | chr1.1:3995306-3995325 | None:intergenic | 50.0% | |
GCAGCCTAATTGCGGCATTT+GGG | - | chr1.1:3995299-3995318 | MS.gene24433:intron | 50.0% | |
GCAGGGTTGTCGAAAATACC+AGG | - | chr1.1:3999238-3999257 | MS.gene24433:intron | 50.0% | |
GGCAGAGGAAAAGCAACATG+AGG | + | chr1.1:3997041-3997060 | None:intergenic | 50.0% | |
GGCGTCTGAGTCATTGCAAA+GGG | - | chr1.1:3999590-3999609 | MS.gene24433:CDS | 50.0% | |
GTCATCGGACCAAAAAACCG+AGG | + | chr1.1:3997288-3997307 | None:intergenic | 50.0% | |
GTCCACTGGGGAATACAGAA+TGG | - | chr1.1:3997555-3997574 | MS.gene24433:intron | 50.0% | |
GTTACTTCTGTGGAGTGGAG+CGG | - | chr1.1:3994955-3994974 | MS.gene24433:intron | 50.0% | |
TCTACCTGGACCCACTACAA+TGG | - | chr1.1:3996330-3996349 | MS.gene24433:intron | 50.0% | |
TGAGTCATTGCAAAGGGCTG+CGG | - | chr1.1:3999596-3999615 | MS.gene24433:CDS | 50.0% | |
TGCTTCTATGGGACATGCGT+TGG | - | chr1.1:3998584-3998603 | MS.gene24433:intron | 50.0% | |
! | AGCAGGGATAGCACTGAACA+TGG | + | chr1.1:3997148-3997167 | None:intergenic | 50.0% |
! | AGGGATAGCACTGAACATGG+TGG | + | chr1.1:3997145-3997164 | None:intergenic | 50.0% |
! | ATGGAGCGCTCACAACCTTT+AGG | - | chr1.1:3997781-3997800 | MS.gene24433:intron | 50.0% |
! | CAAAACCGGCTTATAAGGCG+AGG | + | chr1.1:3995380-3995399 | None:intergenic | 50.0% |
! | CCTTGCTAACTTGTGCCCTA+AGG | - | chr1.1:3998798-3998817 | MS.gene24433:intron | 50.0% |
!! | GTGCTTGGAAGTTCTGGAAG+AGG | - | chr1.1:3998426-3998445 | MS.gene24433:intron | 50.0% |
!!! | AAAGTTTTTAGGGCGAGCCC+TGG | - | chr1.1:3996233-3996252 | MS.gene24433:intron | 50.0% |
!!! | TTTTTTGGGCACTGGGCTGA+TGG | - | chr1.1:3996870-3996889 | MS.gene24433:intron | 50.0% |
ACCTCGTGACCTGGTAGTCA+TGG | - | chr1.1:3996281-3996300 | MS.gene24433:intron | 55.0% | |
AGAGCTACTCAACCGCTGCA+AGG | + | chr1.1:3998926-3998945 | None:intergenic | 55.0% | |
AGCCCAAGGACCGACTAATC+CGG | + | chr1.1:3997967-3997986 | None:intergenic | 55.0% | |
ATAAAACCCACGGGGACCAC+AGG | + | chr1.1:3996958-3996977 | None:intergenic | 55.0% | |
ATGAACCGCCAGTGCTAGAG+AGG | - | chr1.1:3995863-3995882 | MS.gene24433:intron | 55.0% | |
CAACGCCTCCATTGATCAGC+TGG | + | chr1.1:3997461-3997480 | None:intergenic | 55.0% | |
CAAGATGGACATCTGGGCAG+AGG | + | chr1.1:3997056-3997075 | None:intergenic | 55.0% | |
GAGTGGAGCGGAGCTGTATA+AGG | - | chr1.1:3994967-3994986 | MS.gene24433:intron | 55.0% | |
GCAGCGCTTGCAAGATATGG+AGG | + | chr1.1:3998973-3998992 | None:intergenic | 55.0% | |
GCTGCGGCATTAGTCCTTGA+TGG | - | chr1.1:3999612-3999631 | MS.gene24433:CDS | 55.0% | |
GGCCATTCTGTATTCCCCAG+TGG | + | chr1.1:3997560-3997579 | None:intergenic | 55.0% | |
GGTGCAGAATCCTCCTTCTG+TGG | + | chr1.1:3998610-3998629 | None:intergenic | 55.0% | |
TGCCGCAATTAGGCTGCTAG+GGG | + | chr1.1:3995296-3995315 | None:intergenic | 55.0% | |
TTGCAGCGGTTGAGTAGCTC+TGG | - | chr1.1:3998925-3998944 | MS.gene24433:intron | 55.0% | |
TTGGGATCCCCCCTAATGGA+TGG | - | chr1.1:3997928-3997947 | MS.gene24433:intron | 55.0% | |
! | GATCCCCCCTAATGGATGGT+GGG | - | chr1.1:3997932-3997951 | MS.gene24433:intron | 55.0% |
! | TGTGGTCCCCGTGGGTTTTA+TGG | - | chr1.1:3996957-3996976 | MS.gene24433:intron | 55.0% |
!! | ACTCCCATTGTAGTGGGTCC+AGG | + | chr1.1:3996337-3996356 | None:intergenic | 55.0% |
!! | CCCCTAATGGATGGTGGGAT+TGG | - | chr1.1:3997937-3997956 | MS.gene24433:intron | 55.0% |
!! | GATTGGTCCCCCGGATTAGT+CGG | - | chr1.1:3997954-3997973 | MS.gene24433:intron | 55.0% |
ACAGGGATGAGGGAGTCCAC+TGG | - | chr1.1:3997541-3997560 | MS.gene24433:intron | 60.0% | |
AGGGATGAGGGAGTCCACTG+GGG | - | chr1.1:3997543-3997562 | MS.gene24433:intron | 60.0% | |
CAGGGATGAGGGAGTCCACT+GGG | - | chr1.1:3997542-3997561 | MS.gene24433:intron | 60.0% | |
CCAAGGACCGACTAATCCGG+GGG | + | chr1.1:3997964-3997983 | None:intergenic | 60.0% | |
CCCAAGGACCGACTAATCCG+GGG | + | chr1.1:3997965-3997984 | None:intergenic | 60.0% | |
CGCAATTAGGCTGCTAGGGG+CGG | + | chr1.1:3995293-3995312 | None:intergenic | 60.0% | |
CGCCCCTAGCAGCCTAATTG+CGG | - | chr1.1:3995291-3995310 | MS.gene24433:intron | 60.0% | |
GCAGCCCTCGCCTTATAAGC+CGG | - | chr1.1:3995372-3995391 | MS.gene24433:intron | 60.0% | |
GCCATGACTACCAGGTCACG+AGG | + | chr1.1:3996285-3996304 | None:intergenic | 60.0% | |
GCCCAAGGACCGACTAATCC+GGG | + | chr1.1:3997966-3997985 | None:intergenic | 60.0% | |
TTGGTTCCTGTGGTCCCCGT+GGG | - | chr1.1:3996949-3996968 | MS.gene24433:intron | 60.0% | |
! | CATGCGTTGGCCACAGAAGG+AGG | - | chr1.1:3998597-3998616 | MS.gene24433:intron | 60.0% |
! | GGACATGCGTTGGCCACAGA+AGG | - | chr1.1:3998594-3998613 | MS.gene24433:intron | 60.0% |
! | GGATCCCCCCTAATGGATGG+TGG | - | chr1.1:3997931-3997950 | MS.gene24433:intron | 60.0% |
!! | CCCCGGATTAGTCGGTCCTT+GGG | - | chr1.1:3997962-3997981 | MS.gene24433:intron | 60.0% |
!! | GGATTAGTCGGTCCTTGGGC+TGG | - | chr1.1:3997966-3997985 | MS.gene24433:intron | 60.0% |
!! | TTTGGGCACTGGGCTGATGG+TGG | - | chr1.1:3996873-3996892 | MS.gene24433:intron | 60.0% |
TAGGGCGAGCCCTGGCATAG+TGG | - | chr1.1:3996241-3996260 | MS.gene24433:intron | 65.0% | |
! | GTTGGTTCCTGTGGTCCCCG+TGG | - | chr1.1:3996948-3996967 | MS.gene24433:intron | 65.0% |
!! | CCCCCGGATTAGTCGGTCCT+TGG | - | chr1.1:3997961-3997980 | MS.gene24433:intron | 65.0% |
!! | GGATGGTGGGATTGGTCCCC+CGG | - | chr1.1:3997945-3997964 | MS.gene24433:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 3994528 | 3999644 | 3994528 | ID=MS.gene24433 |
chr1.1 | mRNA | 3994528 | 3999644 | 3994528 | ID=MS.gene24433.t1;Parent=MS.gene24433 |
chr1.1 | exon | 3999539 | 3999644 | 3999539 | ID=MS.gene24433.t1.exon1;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3999539 | 3999644 | 3999539 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3999311 | 3999405 | 3999311 | ID=MS.gene24433.t1.exon2;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3999311 | 3999405 | 3999311 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3998288 | 3998379 | 3998288 | ID=MS.gene24433.t1.exon3;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3998288 | 3998379 | 3998288 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3997336 | 3997429 | 3997336 | ID=MS.gene24433.t1.exon4;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3997336 | 3997429 | 3997336 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3997185 | 3997257 | 3997185 | ID=MS.gene24433.t1.exon5;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3997185 | 3997257 | 3997185 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3996976 | 3997108 | 3996976 | ID=MS.gene24433.t1.exon6;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3996976 | 3997108 | 3996976 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3996453 | 3996627 | 3996453 | ID=MS.gene24433.t1.exon7;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3996453 | 3996627 | 3996453 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3995699 | 3995839 | 3995699 | ID=MS.gene24433.t1.exon8;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3995699 | 3995839 | 3995699 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3995516 | 3995611 | 3995516 | ID=MS.gene24433.t1.exon9;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3995516 | 3995611 | 3995516 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3995100 | 3995241 | 3995100 | ID=MS.gene24433.t1.exon10;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3995100 | 3995241 | 3995100 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3994803 | 3994930 | 3994803 | ID=MS.gene24433.t1.exon11;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3994803 | 3994930 | 3994803 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
chr1.1 | exon | 3994528 | 3994704 | 3994528 | ID=MS.gene24433.t1.exon12;Parent=MS.gene24433.t1 |
chr1.1 | CDS | 3994528 | 3994704 | 3994528 | ID=cds.MS.gene24433.t1;Parent=MS.gene24433.t1 |
Gene Sequence |
Protein sequence |