Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24637.t1 | XP_013450057.1 | 99.2 | 380 | 3 | 0 | 1 | 380 | 56 | 435 | 5.10E-203 | 716.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24637.t1 | Q8S9J0 | 75.8 | 380 | 92 | 0 | 1 | 380 | 53 | 432 | 3.0e-159 | 562.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24637.t1 | A0A072UE30 | 99.2 | 380 | 3 | 0 | 1 | 380 | 56 | 435 | 3.7e-203 | 716.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene24637 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene050128 | MS.gene24637 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene24637 | 0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene24637 | 0.835249 | 1.87E-56 | -1.69E-46 |
| MS.gene057450 | MS.gene24637 | 0.803703 | 3.07E-49 | -1.69E-46 |
| MS.gene057537 | MS.gene24637 | 0.854275 | 1.37E-61 | -1.69E-46 |
| MS.gene059788 | MS.gene24637 | 0.827392 | 1.60E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24637.t1 | MTR_7g103300 | 99.211 | 380 | 3 | 0 | 1 | 380 | 56 | 435 | 0.0 | 756 |
| MS.gene24637.t1 | MTR_7g103300 | 99.211 | 380 | 3 | 0 | 1 | 380 | 56 | 435 | 0.0 | 756 |
| MS.gene24637.t1 | MTR_7g103300 | 99.211 | 380 | 3 | 0 | 1 | 380 | 8 | 387 | 0.0 | 754 |
| MS.gene24637.t1 | MTR_7g103300 | 99.420 | 345 | 2 | 0 | 36 | 380 | 1 | 345 | 0.0 | 687 |
| MS.gene24637.t1 | MTR_7g103300 | 97.923 | 337 | 7 | 0 | 1 | 337 | 56 | 392 | 0.0 | 671 |
| MS.gene24637.t1 | MTR_7g103300 | 99.010 | 303 | 3 | 0 | 1 | 303 | 56 | 358 | 0.0 | 612 |
| MS.gene24637.t1 | MTR_1g061710 | 75.329 | 304 | 71 | 2 | 1 | 301 | 57 | 359 | 1.84e-137 | 402 |
| MS.gene24637.t1 | MTR_1g061710 | 87.179 | 78 | 10 | 0 | 303 | 380 | 427 | 504 | 9.15e-33 | 129 |
| MS.gene24637.t1 | MTR_3g109950 | 55.236 | 382 | 158 | 5 | 1 | 380 | 72 | 442 | 1.61e-122 | 362 |
| MS.gene24637.t1 | MTR_3g109950 | 55.236 | 382 | 158 | 5 | 1 | 380 | 72 | 442 | 1.80e-122 | 362 |
| MS.gene24637.t1 | MTR_8g077830 | 53.385 | 384 | 165 | 3 | 1 | 380 | 68 | 441 | 8.27e-116 | 345 |
| MS.gene24637.t1 | MTR_3g109950 | 55.357 | 336 | 137 | 5 | 1 | 334 | 72 | 396 | 2.67e-104 | 314 |
| MS.gene24637.t1 | MTR_8g088080 | 52.468 | 385 | 162 | 4 | 6 | 380 | 76 | 449 | 1.95e-102 | 311 |
| MS.gene24637.t1 | MTR_5g019950 | 52.880 | 382 | 166 | 5 | 1 | 380 | 75 | 444 | 3.62e-102 | 310 |
| MS.gene24637.t1 | MTR_8g088070 | 51.554 | 386 | 164 | 5 | 6 | 380 | 71 | 444 | 1.51e-100 | 306 |
| MS.gene24637.t1 | MTR_1g026910 | 45.876 | 388 | 194 | 4 | 1 | 380 | 52 | 431 | 9.32e-98 | 298 |
| MS.gene24637.t1 | MTR_1g026910 | 45.876 | 388 | 194 | 4 | 1 | 380 | 52 | 431 | 2.17e-97 | 297 |
| MS.gene24637.t1 | MTR_2g010740 | 30.424 | 401 | 245 | 9 | 1 | 380 | 55 | 442 | 1.19e-37 | 141 |
| MS.gene24637.t1 | MTR_2g010740 | 28.701 | 331 | 202 | 9 | 1 | 310 | 55 | 372 | 2.23e-24 | 103 |
| MS.gene24637.t1 | MTR_5g019970 | 60.759 | 79 | 31 | 0 | 302 | 380 | 6 | 84 | 1.94e-19 | 83.2 |
| MS.gene24637.t1 | MTR_3g110012 | 51.579 | 95 | 23 | 2 | 263 | 335 | 52 | 145 | 1.13e-12 | 65.5 |
| MS.gene24637.t1 | MTR_3g109980 | 51.579 | 95 | 23 | 2 | 263 | 335 | 52 | 145 | 1.13e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24637.t1 | AT2G36630 | 77.368 | 380 | 86 | 0 | 1 | 380 | 53 | 432 | 0.0 | 538 |
| MS.gene24637.t1 | AT2G25737 | 54.663 | 386 | 159 | 3 | 1 | 380 | 73 | 448 | 1.15e-123 | 365 |
| MS.gene24637.t1 | AT2G25737 | 52.751 | 309 | 130 | 3 | 1 | 303 | 73 | 371 | 1.51e-87 | 269 |
| MS.gene24637.t1 | AT1G11540 | 30.028 | 353 | 227 | 6 | 32 | 375 | 79 | 420 | 1.09e-37 | 141 |
| MS.gene24637.t1 | AT1G11540 | 30.172 | 348 | 223 | 6 | 37 | 375 | 1 | 337 | 1.47e-37 | 139 |
| MS.gene24637.t1 | AT4G21250 | 31.959 | 388 | 243 | 5 | 1 | 380 | 51 | 425 | 2.27e-36 | 137 |
| MS.gene24637.t1 | AT1G61740 | 28.412 | 359 | 229 | 8 | 32 | 375 | 83 | 428 | 3.18e-34 | 132 |
| MS.gene24637.t1 | AT4G21260 | 30.994 | 342 | 181 | 10 | 42 | 380 | 80 | 369 | 4.61e-26 | 108 |
Find 87 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAAGGTCTTTCTTTA+AGG | 0.115168 | 7.2:+9692669 | MS.gene24637:CDS |
| TTCTGGAGGTGGATTCATTT+TGG | 0.141739 | 7.2:+9693803 | MS.gene24637:CDS |
| CCTATGCTTACTCTTATTAT+TGG | 0.163814 | 7.2:+9692201 | MS.gene24637:CDS |
| CTATTGCACTAGTGGTATTT+TGG | 0.180174 | 7.2:+9693625 | MS.gene24637:CDS |
| AGAAAATTGCTTAGAATTCT+TGG | 0.183484 | 7.2:+9694515 | MS.gene24637:CDS |
| TCTTAAGTGGAAAAGGATTT+TGG | 0.208098 | 7.2:+9693186 | MS.gene24637:CDS |
| GCCTCAATTATTGGCTTTCT+AGG | 0.224694 | 7.2:+9692129 | MS.gene24637:CDS |
| CTTGCTTTGGCCTCAATTAT+TGG | 0.227645 | 7.2:+9692120 | MS.gene24637:CDS |
| AACAAAAGATGTTCCAATAT+TGG | 0.229019 | 7.2:+9692420 | MS.gene24637:CDS |
| CTTACTACTTCAGGTCATTA+AGG | 0.231663 | 7.2:+9693234 | MS.gene24637:CDS |
| GGCTTTCTAGGATCTGCTTT+TGG | 0.237402 | 7.2:+9692141 | MS.gene24637:CDS |
| GGTTTCTTTCTTACTACTTC+AGG | 0.259142 | 7.2:+9693225 | MS.gene24637:CDS |
| TGTGCACTCTGTGGAATCTT+AGG | 0.276638 | 7.2:+9693756 | MS.gene24637:CDS |
| GGCCCTCTTCTCATTGAGAT+TGG | 0.295473 | 7.2:+9693825 | MS.gene24637:CDS |
| TTGTTGGATGACGCACTCTT+AGG | 0.313192 | 7.2:-9692402 | None:intergenic |
| GTTATTTATAGGTATGATAA+TGG | 0.318227 | 7.2:+9692351 | MS.gene24637:intron |
| CCTCTTCACAGTGTCTGTTT+TGG | 0.327724 | 7.2:+9694466 | MS.gene24637:CDS |
| GTTGGAGGGCTACTTGGTTC+TGG | 0.338070 | 7.2:+9693786 | MS.gene24637:CDS |
| TCTTCAAGGTCTTTCTTTAA+GGG | 0.338871 | 7.2:+9692670 | MS.gene24637:CDS |
| GCCTAGTTGGAGACTTGCTT+TGG | 0.339589 | 7.2:+9692107 | MS.gene24637:CDS |
| GCTAAATCATAATCCAATAT+TGG | 0.345497 | 7.2:-9692433 | None:intergenic |
| GGGCTACTTGGTTCTGGAGG+TGG | 0.346055 | 7.2:+9693792 | MS.gene24637:CDS |
| AAGAGGTTCCCCATTCCTTA+TGG | 0.352277 | 7.2:+9694195 | MS.gene24637:CDS |
| CAAAATACCACTAGTGCAAT+AGG | 0.361717 | 7.2:-9693624 | None:intergenic |
| ATCATTGTATTCATCCTCTC+AGG | 0.365275 | 7.2:+9694548 | MS.gene24637:CDS |
| ATCTTAGGTGGGACCGTTGG+AGG | 0.395223 | 7.2:+9693771 | MS.gene24637:CDS |
| GTTCCAATCTTAAGTGGAAA+AGG | 0.406736 | 7.2:+9693179 | MS.gene24637:CDS |
| AAGCTTCACATATACATTCC+AGG | 0.407619 | 7.2:-9693701 | None:intergenic |
| AGGTCTGCAGTGTATGGTAT+TGG | 0.414722 | 7.2:+9693361 | MS.gene24637:CDS |
| TTGTTAATTGCAGAAAGAAA+TGG | 0.424199 | 7.2:+9692808 | MS.gene24637:intron |
| GGGACCGTTGGAGGGCTACT+TGG | 0.428854 | 7.2:+9693780 | MS.gene24637:CDS |
| TGCAGGAATTGGAGCCTAGT+TGG | 0.435667 | 7.2:+9692094 | None:intergenic |
| TGAAAGGTACCATAAGGAAT+GGG | 0.440922 | 7.2:-9694204 | None:intergenic |
| TTATTTATAGGTATGATAAT+GGG | 0.441362 | 7.2:+9692352 | MS.gene24637:intron |
| TTTGGATAGGAACTTCTTCA+AGG | 0.444034 | 7.2:+9692656 | MS.gene24637:intron |
| ACCGTTGGTGGTGTTGGTGG+TGG | 0.448909 | 7.2:+9692165 | MS.gene24637:CDS |
| GGTCTGCAGTGTATGGTATT+GGG | 0.449354 | 7.2:+9693362 | MS.gene24637:CDS |
| GTTGGTGGTGTTGGTGGTGG+TGG | 0.454327 | 7.2:+9692168 | MS.gene24637:CDS |
| TACATACCTGTAAGGAGAAA+AGG | 0.464417 | 7.2:-9693386 | None:intergenic |
| TTTCAACCTATGCTTATGCT+TGG | 0.465503 | 7.2:+9692463 | MS.gene24637:CDS |
| TATGTGAAGCTTCAATTGAA+TGG | 0.468378 | 7.2:+9693712 | MS.gene24637:CDS |
| TCAGTTTCCTATTGCACTAG+TGG | 0.468918 | 7.2:+9693617 | MS.gene24637:intron |
| AGGACAGTGATGAGCCAGTA+AGG | 0.475643 | 7.2:-9692520 | None:intergenic |
| TTTGGAACCGTTGGTGGTGT+TGG | 0.485288 | 7.2:+9692159 | MS.gene24637:CDS |
| GGAAAGAGCAGCAGCAGACT+TGG | 0.486427 | 7.2:-9692232 | None:intergenic |
| CTTATGCTTGGTATCACTGT+TGG | 0.488422 | 7.2:+9692475 | MS.gene24637:CDS |
| TTCTCTTCTCTAGGTACCAA+CGG | 0.500513 | 7.2:-9693035 | None:intergenic |
| GGAACCGTTGGTGGTGTTGG+TGG | 0.502109 | 7.2:+9692162 | MS.gene24637:CDS |
| ATGAAAGGTACCATAAGGAA+TGG | 0.503629 | 7.2:-9694205 | None:intergenic |
| TTTGCTAGTGCTCTCACCAT+GGG | 0.514375 | 7.2:+9694578 | MS.gene24637:CDS |
| TTTGGTGTTAATGATTGTGT+GGG | 0.524681 | 7.2:+9693204 | MS.gene24637:CDS |
| GAAAGAAGAGACTCTTCTAA+AGG | 0.532361 | 7.2:+9692705 | MS.gene24637:CDS |
| CTATGAAAAGAATAATGATA+AGG | 0.533759 | 7.2:-9692540 | None:intergenic |
| TGAGATTGGTGTCATCCCTC+AGG | 0.534217 | 7.2:+9693839 | MS.gene24637:CDS |
| GCACTCTGTGGAATCTTAGG+TGG | 0.534981 | 7.2:+9693759 | MS.gene24637:CDS |
| TAGAGAAGAGAAAACTCCTA+TGG | 0.538536 | 7.2:+9693046 | MS.gene24637:CDS |
| GAGGATGAGTACAGGAAACC+TGG | 0.540526 | 7.2:+9693683 | MS.gene24637:CDS |
| CACTCTGTGGAATCTTAGGT+GGG | 0.542197 | 7.2:+9693760 | MS.gene24637:CDS |
| TACAAGAAGAGGATGAGTAC+AGG | 0.547246 | 7.2:+9693675 | MS.gene24637:CDS |
| ACCACCACCAACACCACCAA+CGG | 0.547510 | 7.2:-9692166 | None:intergenic |
| GAATGGGGAACCTCTTGAGC+AGG | 0.549756 | 7.2:-9694188 | None:intergenic |
| TATTATCATACATACCTGTA+AGG | 0.550069 | 7.2:-9693394 | None:intergenic |
| ATGTCAAGGTCTGCAGTGTA+TGG | 0.557509 | 7.2:+9693355 | MS.gene24637:CDS |
| GAGGATGAATACAATGATTG+AGG | 0.567259 | 7.2:-9694543 | None:intergenic |
| TCTTAGGTGGGACCGTTGGA+GGG | 0.569227 | 7.2:+9693772 | MS.gene24637:CDS |
| TGGTTTGCAGAATGATGTCA+AGG | 0.570401 | 7.2:+9693341 | MS.gene24637:intron |
| TCCTAGAAAGCCAATAATTG+AGG | 0.572327 | 7.2:-9692130 | None:intergenic |
| TCATTGTATTCATCCTCTCA+GGG | 0.573524 | 7.2:+9694549 | MS.gene24637:CDS |
| CACCAATCTCAATGAGAAGA+GGG | 0.579201 | 7.2:-9693827 | None:intergenic |
| TCTTTAAGGGAACTGAGATG+TGG | 0.592420 | 7.2:+9692683 | MS.gene24637:CDS |
| GGAGGGCTACTTGGTTCTGG+AGG | 0.593688 | 7.2:+9693789 | MS.gene24637:CDS |
| TTGAATTCTACCTGCTCAAG+AGG | 0.594537 | 7.2:+9694178 | MS.gene24637:CDS |
| TGACACGGAATATGATCCGT+TGG | 0.595281 | 7.2:+9693019 | MS.gene24637:CDS |
| TGAAGCAATGAAGTTGTACA+AGG | 0.607163 | 7.2:+9693650 | MS.gene24637:CDS |
| TGTACAAGGATTACAAGAAG+AGG | 0.614235 | 7.2:+9693664 | MS.gene24637:CDS |
| CCAAAACAGACACTGTGAAG+AGG | 0.614270 | 7.2:-9694466 | None:intergenic |
| GCCAAAGCAAGTCTCCAACT+AGG | 0.614402 | 7.2:-9692108 | None:intergenic |
| GGAATCTTAGGTGGGACCGT+TGG | 0.618283 | 7.2:+9693768 | MS.gene24637:CDS |
| GGACAGTGATGAGCCAGTAA+GGG | 0.622892 | 7.2:-9692519 | None:intergenic |
| AGAACCAAGTAGCCCTCCAA+CGG | 0.623795 | 7.2:-9693784 | None:intergenic |
| ACACCAATCTCAATGAGAAG+AGG | 0.626818 | 7.2:-9693828 | None:intergenic |
| GTGATACCAAGCATAAGCAT+AGG | 0.629811 | 7.2:-9692469 | None:intergenic |
| CCAATAATAAGAGTAAGCAT+AGG | 0.636816 | 7.2:-9692201 | None:intergenic |
| GAAAGGTACCATAAGGAATG+GGG | 0.644081 | 7.2:-9694203 | None:intergenic |
| ATTGCAGAAAGAAATGGCAA+AGG | 0.644245 | 7.2:+9692814 | MS.gene24637:intron |
| ATATGCAGTTCTAATTGACA+CGG | 0.678566 | 7.2:+9693004 | MS.gene24637:intron |
| CATTGTATTCATCCTCTCAG+GGG | 0.714050 | 7.2:+9694550 | MS.gene24637:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCTATATATATGATTT+TGG | + | chr7.2:9693321-9693340 | MS.gene24637:intron | 10.0% |
| !! | AAAAAGAAAAGACATATATT+CGG | - | chr7.2:9692639-9692658 | None:intergenic | 15.0% |
| !! | AAATGAAAAATATACAAATC+TGG | + | chr7.2:9692943-9692962 | MS.gene24637:intron | 15.0% |
| !! | TTATTTATAGGTATGATAAT+GGG | + | chr7.2:9692352-9692371 | MS.gene24637:intron | 15.0% |
| !!! | ATCTATTTTCAAATTTATGT+TGG | + | chr7.2:9692883-9692902 | MS.gene24637:intron | 15.0% |
| !! | AAAACGGAATTAATTACATT+TGG | - | chr7.2:9692256-9692275 | None:intergenic | 20.0% |
| !! | AAATGAAACCTTATGTAAAA+CGG | - | chr7.2:9692272-9692291 | None:intergenic | 20.0% |
| !! | AAATTTATGTTGGATTCATT+AGG | + | chr7.2:9692893-9692912 | MS.gene24637:intron | 20.0% |
| !! | AATTAATAGAAATAGTAGAG+AGG | - | chr7.2:9693266-9693285 | None:intergenic | 20.0% |
| !! | ATGTAATGATGAAGTTAATT+TGG | + | chr7.2:9693457-9693476 | MS.gene24637:intron | 20.0% |
| !! | CAAATTGTACTTTATGAAAT+TGG | - | chr7.2:9693423-9693442 | None:intergenic | 20.0% |
| !! | CTATGAAAAGAATAATGATA+AGG | - | chr7.2:9692543-9692562 | None:intergenic | 20.0% |
| !! | GTTATTTATAGGTATGATAA+TGG | + | chr7.2:9692351-9692370 | MS.gene24637:intron | 20.0% |
| !! | TAAAACTTTCATCTACTTAT+TGG | + | chr7.2:9693103-9693122 | MS.gene24637:intron | 20.0% |
| !! | TGTAATGATGAAGTTAATTT+GGG | + | chr7.2:9693458-9693477 | MS.gene24637:intron | 20.0% |
| !!! | AATTAATTCCGTTTTACATA+AGG | + | chr7.2:9692261-9692280 | MS.gene24637:intron | 20.0% |
| !!! | AGCTAGTATTCTTTTAAAAA+AGG | - | chr7.2:9693569-9693588 | None:intergenic | 20.0% |
| !!! | CTTATCATTATTCTTTTCAT+AGG | + | chr7.2:9692541-9692560 | MS.gene24637:CDS | 20.0% |
| !!! | GAAGTTTTAATTAATACCAT+AGG | - | chr7.2:9693065-9693084 | None:intergenic | 20.0% |
| !!! | GAATATATGTCTTTTCTTTT+TGG | + | chr7.2:9692638-9692657 | MS.gene24637:intron | 20.0% |
| !!! | TTGTTGACTATGTTATTTAT+AGG | + | chr7.2:9692340-9692359 | MS.gene24637:intron | 20.0% |
| ! | AACAAAAGATGTTCCAATAT+TGG | + | chr7.2:9692420-9692439 | MS.gene24637:CDS | 25.0% |
| ! | AGAAAATTGCTTAGAATTCT+TGG | + | chr7.2:9694515-9694534 | MS.gene24637:CDS | 25.0% |
| ! | AGGACTGTATAGAAATTAAT+AGG | + | chr7.2:9694316-9694335 | MS.gene24637:intron | 25.0% |
| ! | GAGAACTGAGAATTAATTAA+AGG | - | chr7.2:9694269-9694288 | None:intergenic | 25.0% |
| ! | GCTAAATCATAATCCAATAT+TGG | - | chr7.2:9692436-9692455 | None:intergenic | 25.0% |
| ! | TATACAAATCTGGATTCATA+TGG | + | chr7.2:9692953-9692972 | MS.gene24637:intron | 25.0% |
| ! | TATTATCATACATACCTGTA+AGG | - | chr7.2:9693397-9693416 | None:intergenic | 25.0% |
| ! | TTGTTAATTGCAGAAAGAAA+TGG | + | chr7.2:9692808-9692827 | MS.gene24637:intron | 25.0% |
| !! | AATATTGGAACATCTTTTGT+TGG | - | chr7.2:9692421-9692440 | None:intergenic | 25.0% |
| !! | TATGTCTTTTCTTTTTGGAT+AGG | + | chr7.2:9692643-9692662 | MS.gene24637:intron | 25.0% |
| !! | TATTTTGTTCCAATCTTAAG+TGG | + | chr7.2:9693173-9693192 | MS.gene24637:CDS | 25.0% |
| !!! | AAAGTTTAAGAGTTGATGAA+AGG | - | chr7.2:9694223-9694242 | None:intergenic | 25.0% |
| AAATTGCCTAAGTCTAAGAA+GGG | - | chr7.2:9694079-9694098 | None:intergenic | 30.0% | |
| ACTTTCATCTACTTATTGGT+TGG | + | chr7.2:9693107-9693126 | MS.gene24637:intron | 30.0% | |
| CAATTAGAACTGCATATTTC+AGG | - | chr7.2:9693001-9693020 | None:intergenic | 30.0% | |
| CCAATAATAAGAGTAAGCAT+AGG | - | chr7.2:9692204-9692223 | None:intergenic | 30.0% | |
| CCTATGCTTACTCTTATTAT+TGG | + | chr7.2:9692201-9692220 | MS.gene24637:CDS | 30.0% | |
| CTGAGAATTAATTAAAGGCA+TGG | - | chr7.2:9694264-9694283 | None:intergenic | 30.0% | |
| TAAATTGCCTAAGTCTAAGA+AGG | - | chr7.2:9694080-9694099 | None:intergenic | 30.0% | |
| TATGTGAAGCTTCAATTGAA+TGG | + | chr7.2:9693712-9693731 | MS.gene24637:CDS | 30.0% | |
| TCTTCAAGGTCTTTCTTTAA+GGG | + | chr7.2:9692670-9692689 | MS.gene24637:CDS | 30.0% | |
| TTCTTCAAGGTCTTTCTTTA+AGG | + | chr7.2:9692669-9692688 | MS.gene24637:CDS | 30.0% | |
| ! | AACTTTTGTTAATTCTCGTG+GGG | + | chr7.2:9692844-9692863 | MS.gene24637:CDS | 30.0% |
| ! | AATCCTTTTCCACTTAAGAT+TGG | - | chr7.2:9693185-9693204 | None:intergenic | 30.0% |
| ! | ACAACTTTTGTTAATTCTCG+TGG | + | chr7.2:9692842-9692861 | MS.gene24637:CDS | 30.0% |
| ! | ATATGCAGTTCTAATTGACA+CGG | + | chr7.2:9693004-9693023 | MS.gene24637:intron | 30.0% |
| ! | CAACTTTTGTTAATTCTCGT+GGG | + | chr7.2:9692843-9692862 | MS.gene24637:CDS | 30.0% |
| ! | CTTAGGCAATTTAACTTACA+AGG | + | chr7.2:9694087-9694106 | MS.gene24637:intron | 30.0% |
| ! | TCTTAAGTGGAAAAGGATTT+TGG | + | chr7.2:9693186-9693205 | MS.gene24637:CDS | 30.0% |
| !! | ACTTTTTCTCTTACAAGACA+TGG | - | chr7.2:9694293-9694312 | None:intergenic | 30.0% |
| !! | TTTGGTGTTAATGATTGTGT+GGG | + | chr7.2:9693204-9693223 | MS.gene24637:CDS | 30.0% |
| !!! | TTTTGGTGTTAATGATTGTG+TGG | + | chr7.2:9693203-9693222 | MS.gene24637:CDS | 30.0% |
| AAGCTTCACATATACATTCC+AGG | - | chr7.2:9693704-9693723 | None:intergenic | 35.0% | |
| ATCATTGTATTCATCCTCTC+AGG | + | chr7.2:9694548-9694567 | MS.gene24637:CDS | 35.0% | |
| ATTGCAGAAAGAAATGGCAA+AGG | + | chr7.2:9692814-9692833 | MS.gene24637:intron | 35.0% | |
| CAAAATACCACTAGTGCAAT+AGG | - | chr7.2:9693627-9693646 | None:intergenic | 35.0% | |
| CAATGCTTGATTAGAAACAG+AGG | + | chr7.2:9692292-9692311 | MS.gene24637:intron | 35.0% | |
| CTAAGTCTAAGAAGGGATTT+CGG | - | chr7.2:9694072-9694091 | None:intergenic | 35.0% | |
| CTTACTACTTCAGGTCATTA+AGG | + | chr7.2:9693234-9693253 | MS.gene24637:CDS | 35.0% | |
| CTTGTAAGAGAAAAAGTGAG+AGG | + | chr7.2:9694296-9694315 | MS.gene24637:intron | 35.0% | |
| GAAAGAAGAGACTCTTCTAA+AGG | + | chr7.2:9692705-9692724 | MS.gene24637:CDS | 35.0% | |
| GAGGATGAATACAATGATTG+AGG | - | chr7.2:9694546-9694565 | None:intergenic | 35.0% | |
| GGTTTCTTTCTTACTACTTC+AGG | + | chr7.2:9693225-9693244 | MS.gene24637:CDS | 35.0% | |
| GTTCCAATCTTAAGTGGAAA+AGG | + | chr7.2:9693179-9693198 | MS.gene24637:CDS | 35.0% | |
| TACATACCTGTAAGGAGAAA+AGG | - | chr7.2:9693389-9693408 | None:intergenic | 35.0% | |
| TAGAGAAGAGAAAACTCCTA+TGG | + | chr7.2:9693046-9693065 | MS.gene24637:CDS | 35.0% | |
| TCATTGTATTCATCCTCTCA+GGG | + | chr7.2:9694549-9694568 | MS.gene24637:CDS | 35.0% | |
| TCCTAGAAAGCCAATAATTG+AGG | - | chr7.2:9692133-9692152 | None:intergenic | 35.0% | |
| TCTATATGTACTGTACCTGA+GGG | - | chr7.2:9693857-9693876 | None:intergenic | 35.0% | |
| TGAAGCAATGAAGTTGTACA+AGG | + | chr7.2:9693650-9693669 | MS.gene24637:CDS | 35.0% | |
| TGTACAAGGATTACAAGAAG+AGG | + | chr7.2:9693664-9693683 | MS.gene24637:CDS | 35.0% | |
| TTTCAACCTATGCTTATGCT+TGG | + | chr7.2:9692463-9692482 | MS.gene24637:CDS | 35.0% | |
| TTTGGATAGGAACTTCTTCA+AGG | + | chr7.2:9692656-9692675 | MS.gene24637:intron | 35.0% | |
| ! | ATAGGAGTTTTCTCTTCTCT+AGG | - | chr7.2:9693047-9693066 | None:intergenic | 35.0% |
| ! | CTATTGCACTAGTGGTATTT+TGG | + | chr7.2:9693625-9693644 | MS.gene24637:CDS | 35.0% |
| ! | GTCAAGCTTGGTATTTTATC+TGG | + | chr7.2:9693974-9693993 | MS.gene24637:intron | 35.0% |
| ! | GTTTTCATCATCATTGTCTG+TGG | + | chr7.2:9694155-9694174 | MS.gene24637:CDS | 35.0% |
| ! | TCATCTACTTATTGGTTGGT+AGG | + | chr7.2:9693111-9693130 | MS.gene24637:intron | 35.0% |
| !! | AGTTGATGAAAGGTACCATA+AGG | - | chr7.2:9694213-9694232 | None:intergenic | 35.0% |
| !! | ATGAAAGGTACCATAAGGAA+TGG | - | chr7.2:9694208-9694227 | None:intergenic | 35.0% |
| !! | TGAAAGGTACCATAAGGAAT+GGG | - | chr7.2:9694207-9694226 | None:intergenic | 35.0% |
| !!! | CTTACAAGGATTTTGATTGC+AGG | + | chr7.2:9694101-9694120 | MS.gene24637:intron | 35.0% |
| !!! | TTAGTGTTGTTTTCCCTTAC+TGG | + | chr7.2:9692506-9692525 | MS.gene24637:CDS | 35.0% |
| AATCCAAATCCGCATGTGAA+AGG | - | chr7.2:9693886-9693905 | None:intergenic | 40.0% | |
| ACACCAATCTCAATGAGAAG+AGG | - | chr7.2:9693831-9693850 | None:intergenic | 40.0% | |
| ATCCAAATCCGCATGTGAAA+GGG | - | chr7.2:9693885-9693904 | None:intergenic | 40.0% | |
| CACCAATCTCAATGAGAAGA+GGG | - | chr7.2:9693830-9693849 | None:intergenic | 40.0% | |
| CATTGTATTCATCCTCTCAG+GGG | + | chr7.2:9694550-9694569 | MS.gene24637:CDS | 40.0% | |
| CGAAATCCCTTCTTAGACTT+AGG | + | chr7.2:9694070-9694089 | MS.gene24637:intron | 40.0% | |
| CGATATAGATCACGACATCA+TGG | - | chr7.2:9693534-9693553 | None:intergenic | 40.0% | |
| CTTATGCTTGGTATCACTGT+TGG | + | chr7.2:9692475-9692494 | MS.gene24637:CDS | 40.0% | |
| CTTGCTTTGGCCTCAATTAT+TGG | + | chr7.2:9692120-9692139 | MS.gene24637:CDS | 40.0% | |
| GACGTCCATTCTTGATTCAA+TGG | - | chr7.2:9693957-9693976 | None:intergenic | 40.0% | |
| GGCAATTGGTTAAGATCGAA+CGG | - | chr7.2:9694001-9694020 | None:intergenic | 40.0% | |
| GGTGACCATTGAATCAAGAA+TGG | + | chr7.2:9693949-9693968 | MS.gene24637:intron | 40.0% | |
| GTCTATATGTACTGTACCTG+AGG | - | chr7.2:9693858-9693877 | None:intergenic | 40.0% | |
| GTGATACCAAGCATAAGCAT+AGG | - | chr7.2:9692472-9692491 | None:intergenic | 40.0% | |
| TACAAGAAGAGGATGAGTAC+AGG | + | chr7.2:9693675-9693694 | MS.gene24637:CDS | 40.0% | |
| TCAGTTTCCTATTGCACTAG+TGG | + | chr7.2:9693617-9693636 | MS.gene24637:intron | 40.0% | |
| TTAACCAATTGCCACTGATG+TGG | + | chr7.2:9694008-9694027 | MS.gene24637:intron | 40.0% | |
| TTCTCTTCTCTAGGTACCAA+CGG | - | chr7.2:9693038-9693057 | None:intergenic | 40.0% | |
| TTGAATTCTACCTGCTCAAG+AGG | + | chr7.2:9694178-9694197 | MS.gene24637:CDS | 40.0% | |
| ! | ATTGTGTTTTGTGCACTCTG+TGG | + | chr7.2:9693747-9693766 | MS.gene24637:CDS | 40.0% |
| ! | TCTTTAAGGGAACTGAGATG+TGG | + | chr7.2:9692683-9692702 | MS.gene24637:CDS | 40.0% |
| ! | TGGTTTGCAGAATGATGTCA+AGG | + | chr7.2:9693341-9693360 | MS.gene24637:intron | 40.0% |
| !! | GAAAGGTACCATAAGGAATG+GGG | - | chr7.2:9694206-9694225 | None:intergenic | 40.0% |
| !! | GCCTCAATTATTGGCTTTCT+AGG | + | chr7.2:9692129-9692148 | MS.gene24637:CDS | 40.0% |
| !! | TCTGGAGGTGGATTCATTTT+GGG | + | chr7.2:9693804-9693823 | MS.gene24637:CDS | 40.0% |
| !! | TTCTGGAGGTGGATTCATTT+TGG | + | chr7.2:9693803-9693822 | MS.gene24637:CDS | 40.0% |
| AAGAGGTTCCCCATTCCTTA+TGG | + | chr7.2:9694195-9694214 | MS.gene24637:CDS | 45.0% | |
| AAGGGATTTCGGTTGTGTGT+AGG | - | chr7.2:9694061-9694080 | None:intergenic | 45.0% | |
| AGACATACCCCTTTCACATG+CGG | + | chr7.2:9693874-9693893 | MS.gene24637:intron | 45.0% | |
| AGGTCTGCAGTGTATGGTAT+TGG | + | chr7.2:9693361-9693380 | MS.gene24637:CDS | 45.0% | |
| ATGTCAAGGTCTGCAGTGTA+TGG | + | chr7.2:9693355-9693374 | MS.gene24637:CDS | 45.0% | |
| CACTCTGTGGAATCTTAGGT+GGG | + | chr7.2:9693760-9693779 | MS.gene24637:CDS | 45.0% | |
| CCAAAACAGACACTGTGAAG+AGG | - | chr7.2:9694469-9694488 | None:intergenic | 45.0% | |
| CCACAACACAACGACAATTG+AGG | - | chr7.2:9693493-9693512 | None:intergenic | 45.0% | |
| CCTCAATTGTCGTTGTGTTG+TGG | + | chr7.2:9693490-9693509 | MS.gene24637:intron | 45.0% | |
| GGTCTGCAGTGTATGGTATT+GGG | + | chr7.2:9693362-9693381 | MS.gene24637:CDS | 45.0% | |
| TAGCAAAAATGACCCCTGAG+AGG | - | chr7.2:9694565-9694584 | None:intergenic | 45.0% | |
| TCAAGAATGGACGTCAAGCT+TGG | + | chr7.2:9693962-9693981 | MS.gene24637:intron | 45.0% | |
| TCCAAATCCGCATGTGAAAG+GGG | - | chr7.2:9693884-9693903 | None:intergenic | 45.0% | |
| TGACACGGAATATGATCCGT+TGG | + | chr7.2:9693019-9693038 | MS.gene24637:CDS | 45.0% | |
| TGTGCACTCTGTGGAATCTT+AGG | + | chr7.2:9693756-9693775 | MS.gene24637:CDS | 45.0% | |
| TTGTTGGATGACGCACTCTT+AGG | - | chr7.2:9692405-9692424 | None:intergenic | 45.0% | |
| TTTGCTAGTGCTCTCACCAT+GGG | + | chr7.2:9694578-9694597 | MS.gene24637:CDS | 45.0% | |
| ! | CCTCTTCACAGTGTCTGTTT+TGG | + | chr7.2:9694466-9694485 | MS.gene24637:CDS | 45.0% |
| ! | TTGGGTCCTTTTCTCCTTAC+AGG | + | chr7.2:9693380-9693399 | MS.gene24637:CDS | 45.0% |
| ! | TTTTGCTAGTGCTCTCACCA+TGG | + | chr7.2:9694577-9694596 | MS.gene24637:CDS | 45.0% |
| !!! | GGCTTTCTAGGATCTGCTTT+TGG | + | chr7.2:9692141-9692160 | MS.gene24637:CDS | 45.0% |
| !!! | TCTGTTTTGGCTGGCTTTGT+GGG | + | chr7.2:9694479-9694498 | MS.gene24637:CDS | 45.0% |
| !!! | TTCACAGTGTCTGTTTTGGC+TGG | + | chr7.2:9694470-9694489 | MS.gene24637:CDS | 45.0% |
| ACCCCTTTCACATGCGGATT+TGG | + | chr7.2:9693880-9693899 | MS.gene24637:intron | 50.0% | |
| AGAACCAAGTAGCCCTCCAA+CGG | - | chr7.2:9693787-9693806 | None:intergenic | 50.0% | |
| AGCTAGGTGCGTGACTGTAT+GGG | - | chr7.2:9693924-9693943 | None:intergenic | 50.0% | |
| AGGACAGTGATGAGCCAGTA+AGG | - | chr7.2:9692523-9692542 | None:intergenic | 50.0% | |
| AGTCACGCACCTAGCTACAT+CGG | + | chr7.2:9693928-9693947 | MS.gene24637:intron | 50.0% | |
| CAATGGTCACCGATGTAGCT+AGG | - | chr7.2:9693940-9693959 | None:intergenic | 50.0% | |
| GAGGATGAGTACAGGAAACC+TGG | + | chr7.2:9693683-9693702 | MS.gene24637:CDS | 50.0% | |
| GCACTCTGTGGAATCTTAGG+TGG | + | chr7.2:9693759-9693778 | MS.gene24637:CDS | 50.0% | |
| GCCAAAGCAAGTCTCCAACT+AGG | - | chr7.2:9692111-9692130 | None:intergenic | 50.0% | |
| GGACAGTGATGAGCCAGTAA+GGG | - | chr7.2:9692522-9692541 | None:intergenic | 50.0% | |
| GGCCCTCTTCTCATTGAGAT+TGG | + | chr7.2:9693825-9693844 | MS.gene24637:CDS | 50.0% | |
| TAGCTAGGTGCGTGACTGTA+TGG | - | chr7.2:9693925-9693944 | None:intergenic | 50.0% | |
| TCAGCCACATCAGTGGCAAT+TGG | - | chr7.2:9694015-9694034 | None:intergenic | 50.0% | |
| ! | GCCTAGTTGGAGACTTGCTT+TGG | + | chr7.2:9692107-9692126 | MS.gene24637:CDS | 50.0% |
| !! | TGAGATTGGTGTCATCCCTC+AGG | + | chr7.2:9693839-9693858 | MS.gene24637:CDS | 50.0% |
| !! | TTTGGAACCGTTGGTGGTGT+TGG | + | chr7.2:9692159-9692178 | MS.gene24637:CDS | 50.0% |
| !!! | GGATCTGCTTTTGGAACCGT+TGG | + | chr7.2:9692150-9692169 | MS.gene24637:CDS | 50.0% |
| !!! | GTCTGTTTTGGCTGGCTTTG+TGG | + | chr7.2:9694478-9694497 | MS.gene24637:CDS | 50.0% |
| !!! | TCTGCTTTTGGAACCGTTGG+TGG | + | chr7.2:9692153-9692172 | MS.gene24637:CDS | 50.0% |
| ACCACCACCAACACCACCAA+CGG | - | chr7.2:9692169-9692188 | None:intergenic | 55.0% | |
| ATCTTAGGTGGGACCGTTGG+AGG | + | chr7.2:9693771-9693790 | MS.gene24637:CDS | 55.0% | |
| GAATGGGGAACCTCTTGAGC+AGG | - | chr7.2:9694191-9694210 | None:intergenic | 55.0% | |
| GGAAAGAGCAGCAGCAGACT+TGG | - | chr7.2:9692235-9692254 | None:intergenic | 55.0% | |
| GGAATCTTAGGTGGGACCGT+TGG | + | chr7.2:9693768-9693787 | MS.gene24637:CDS | 55.0% | |
| GTTGGAGGGCTACTTGGTTC+TGG | + | chr7.2:9693786-9693805 | MS.gene24637:CDS | 55.0% | |
| TCTTAGGTGGGACCGTTGGA+GGG | + | chr7.2:9693772-9693791 | MS.gene24637:CDS | 55.0% | |
| CACGCAGTCAGCCACATCAG+TGG | - | chr7.2:9694022-9694041 | None:intergenic | 60.0% | |
| !! | ACCGTTGGTGGTGTTGGTGG+TGG | + | chr7.2:9692165-9692184 | MS.gene24637:CDS | 60.0% |
| !! | GGAACCGTTGGTGGTGTTGG+TGG | + | chr7.2:9692162-9692181 | MS.gene24637:CDS | 60.0% |
| !! | GGAGGGCTACTTGGTTCTGG+AGG | + | chr7.2:9693789-9693808 | MS.gene24637:CDS | 60.0% |
| !! | GGGCTACTTGGTTCTGGAGG+TGG | + | chr7.2:9693792-9693811 | MS.gene24637:CDS | 60.0% |
| !! | GTTGGTGGTGTTGGTGGTGG+TGG | + | chr7.2:9692168-9692187 | MS.gene24637:CDS | 60.0% |
| GGGACCGTTGGAGGGCTACT+TGG | + | chr7.2:9693780-9693799 | MS.gene24637:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 9692099 | 9694599 | 9692099 | ID=MS.gene24637 |
| chr7.2 | mRNA | 9692099 | 9694599 | 9692099 | ID=MS.gene24637.t1;Parent=MS.gene24637 |
| chr7.2 | exon | 9692099 | 9692258 | 9692099 | ID=MS.gene24637.t1.exon1;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9692099 | 9692258 | 9692099 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9692362 | 9692562 | 9692362 | ID=MS.gene24637.t1.exon2;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9692362 | 9692562 | 9692362 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9692665 | 9692726 | 9692665 | ID=MS.gene24637.t1.exon3;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9692665 | 9692726 | 9692665 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9692821 | 9692869 | 9692821 | ID=MS.gene24637.t1.exon4;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9692821 | 9692869 | 9692821 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9693012 | 9693067 | 9693012 | ID=MS.gene24637.t1.exon5;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9693012 | 9693067 | 9693012 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9693169 | 9693255 | 9693169 | ID=MS.gene24637.t1.exon6;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9693169 | 9693255 | 9693169 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9693351 | 9693401 | 9693351 | ID=MS.gene24637.t1.exon7;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9693351 | 9693401 | 9693351 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9693621 | 9693860 | 9693621 | ID=MS.gene24637.t1.exon8;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9693621 | 9693860 | 9693621 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9694123 | 9694216 | 9694123 | ID=MS.gene24637.t1.exon9;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9694123 | 9694216 | 9694123 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| chr7.2 | exon | 9694459 | 9694599 | 9694459 | ID=MS.gene24637.t1.exon10;Parent=MS.gene24637.t1 |
| chr7.2 | CDS | 9694459 | 9694599 | 9694459 | ID=cds.MS.gene24637.t1;Parent=MS.gene24637.t1 |
| Gene Sequence |
| Protein sequence |
