AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24641


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24641.t1 MTR_1g061050 87.989 358 43 0 1 358 1 358 0.0 657
MS.gene24641.t1 MTR_5g069055 85.754 358 51 0 1 358 1 358 0.0 641
MS.gene24641.t1 MTR_5g069050 79.609 358 58 1 1 358 42 384 0.0 582
MS.gene24641.t1 MTR_5g096670 78.492 358 76 1 1 358 1 357 0.0 573
MS.gene24641.t1 MTR_4g057670 55.966 352 150 4 8 358 53 400 1.60e-135 392
MS.gene24641.t1 MTR_4g071860 55.966 352 150 4 8 358 53 400 2.15e-135 392
MS.gene24641.t1 MTR_1g109200 53.652 356 160 4 4 358 40 391 4.18e-133 385
MS.gene24641.t1 MTR_4g071880 50.141 355 154 6 8 358 51 386 1.50e-113 335
MS.gene24641.t1 MTR_7g103920 73.958 96 0 1 112 207 11 81 1.26e-40 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24641.t1 AT2G36460 87.151 358 46 0 1 358 1 358 0.0 654
MS.gene24641.t1 AT3G52930 87.709 358 44 0 1 358 1 358 0.0 650
MS.gene24641.t1 AT5G03690 85.237 359 52 1 1 358 1 359 0.0 615
MS.gene24641.t1 AT5G03690 85.673 349 49 1 11 358 45 393 0.0 600
MS.gene24641.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene24641.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene24641.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene24641.t1 AT4G26520 73.184 358 96 0 1 358 1 358 0.0 538
MS.gene24641.t1 AT4G26520 73.315 356 95 0 1 356 1 356 0.0 535
MS.gene24641.t1 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MS.gene24641.t1 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MS.gene24641.t1 AT2G36460 88.015 267 32 0 92 358 1 267 6.91e-179 497
MS.gene24641.t1 AT2G36460 88.015 267 32 0 92 358 1 267 6.91e-179 497
MS.gene24641.t1 AT5G03690 86.517 267 35 1 93 358 1 267 7.62e-165 461
MS.gene24641.t1 AT5G03690 86.517 267 35 1 93 358 1 267 7.62e-165 461
MS.gene24641.t1 AT4G38970 54.802 354 155 4 6 358 49 398 8.76e-134 387
MS.gene24641.t1 AT2G01140 54.830 352 154 4 8 358 44 391 2.92e-133 386
MS.gene24641.t1 AT2G21330 53.955 354 158 4 6 358 50 399 9.02e-132 382
MS.gene24641.t1 AT2G21330 51.977 354 155 5 6 358 50 389 7.89e-123 359
MS.gene24641.t1 AT4G38970 55.598 259 113 2 6 263 49 306 2.38e-96 291
MS.gene24641.t1 AT2G21330 53.668 259 118 2 6 263 50 307 5.63e-94 283

Find 121 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTTCAATTTGTTCA+TGG 0.195538 7.3:-10240606 None:intergenic
TGGGCACTTTCTTTCTCTTT+TGG 0.238095 7.3:+10240635 MS.gene24641:CDS
GATCCGTCCACTAGGATTTC+AGG 0.276408 7.3:-10240317 None:intergenic
CTCAGGAAGCATTCATTTCT+AGG 0.287182 7.3:+10240720 MS.gene24641:CDS
AGGAGTTCTTCCTGGCATTA+AGG 0.292833 7.3:+10240055 MS.gene24641:CDS
GCAACTTTGGGAACTTATAA+AGG 0.304285 7.3:+10240761 MS.gene24641:CDS
CACCAGCTTCATAGTACTTC+TGG 0.307791 7.3:-10240157 None:intergenic
GGCCTTGCAGCGAACCGTTC+CGG 0.326308 7.3:+10240514 MS.gene24641:CDS
CCTGCTGTTGTGTTCTTGTC+TGG 0.328998 7.3:+10240545 MS.gene24641:CDS
TGAGGTGACTGAACGTGTTC+TGG 0.341250 7.3:+10240361 MS.gene24641:CDS
GATGAATCAACTGGTACAAT+TGG 0.356390 7.3:+10239212 MS.gene24641:CDS
GGCTAACTCACAAGCAACTT+TGG 0.373884 7.3:+10240748 MS.gene24641:CDS
GTATATTCGGCTATAACTTC+AGG 0.378009 7.3:-10240485 None:intergenic
AAGTACCTGCAGCTGTCTTT+TGG 0.387833 7.3:-10239364 None:intergenic
TTGGGTGGTGGTTTCCCCAT+TGG 0.390053 7.3:-10240108 None:intergenic
AAGCACCAGGGGTGGTGAAT+AGG 0.392542 7.3:-10239298 None:intergenic
CAAGGCCTTAACGGTATATT+CGG 0.396094 7.3:-10240498 None:intergenic
CTCTGAGTCTCTCCATGTTA+AGG 0.403479 7.3:+10240808 MS.gene24641:CDS
AAGGAAGGAGGAGTTCTTCC+TGG 0.405511 7.3:+10240047 MS.gene24641:CDS
GGTTCGCTGCAAGGCCTTAA+CGG 0.417489 7.3:-10240507 None:intergenic
AAGCATTCATTTCTAGGTGC+AGG 0.421155 7.3:+10240726 MS.gene24641:CDS
GCTAACTCACAAGCAACTTT+GGG 0.426606 7.3:+10240749 MS.gene24641:CDS
CAGCACGCCACTTAGCAAAT+CGG 0.429319 7.3:-10240181 None:intergenic
AGGATTTCAGGCTCCACTAT+AGG 0.433980 7.3:-10240305 None:intergenic
GGAAACCACCACCCAAGGTT+TGG 0.439052 7.3:+10240115 MS.gene24641:CDS
AGTACTCTCAAGGCATGGGC+TGG 0.441574 7.3:+10240674 MS.gene24641:CDS
GCTGCTTACATTGGCAGCCC+AGG 0.446993 7.3:+10239170 MS.gene24641:CDS
GACAGCTCAGATGGCTCGTT+GGG 0.447524 7.3:-10240218 None:intergenic
AAGGGCACTGTAGAGCTTGC+TGG 0.449470 7.3:+10240083 MS.gene24641:CDS
GACATTCTCAACATTAATGC+TGG 0.457419 7.3:-10239246 None:intergenic
TTGAGAATGTCGAAACAAAC+AGG 0.460067 7.3:+10239258 MS.gene24641:CDS
ACCCAAGGTTTGGATGGGCT+TGG 0.462623 7.3:+10240125 MS.gene24641:CDS
GCGGCAAGGATACCCTTCCC+TGG 0.464998 7.3:-10239188 None:intergenic
CCAGACAAGAACACAACAGC+AGG 0.465132 7.3:-10240545 None:intergenic
TAGAGCTTGCTGGAACCAAT+GGG 0.468785 7.3:+10240093 MS.gene24641:CDS
TATAAAGGTGATTCTACCCT+TGG 0.470420 7.3:+10240776 MS.gene24641:CDS
AGCACGCCACTTAGCAAATC+GGG 0.476929 7.3:-10240180 None:intergenic
ACCTTTCGTAGAGTTGTTGA+AGG 0.478093 7.3:+10240028 MS.gene24641:CDS
ACCACCACCCAAGGTTTGGA+TGG 0.478747 7.3:+10240119 MS.gene24641:CDS
CCCATCCAAACCTTGGGTGG+TGG 0.479234 7.3:-10240120 None:intergenic
TGGTACAATTGGGAAGCGTT+TGG 0.480915 7.3:+10239223 MS.gene24641:CDS
GACCAAGCCCATCCAAACCT+TGG 0.485707 7.3:-10240127 None:intergenic
ACCAAGCCCATCCAAACCTT+GGG 0.487111 7.3:-10240126 None:intergenic
CAATGCCATGAACAAATTGA+AGG 0.489466 7.3:+10240601 MS.gene24641:CDS
TGGCGTGCTGTCCTCAAGAT+TGG 0.490006 7.3:+10240194 MS.gene24641:CDS
CAGGCTCCACTATAGGAACT+AGG 0.495272 7.3:-10240298 None:intergenic
ATGAATCAACTGGTACAATT+GGG 0.496848 7.3:+10239213 MS.gene24641:CDS
AGCCGGAACGGTTCGCTGCA+AGG 0.504681 7.3:-10240516 None:intergenic
GCTGTTGTGTTCTTGTCTGG+TGG 0.505060 7.3:+10240548 MS.gene24641:CDS
TATAGCCGAATATACCGTTA+AGG 0.505464 7.3:+10240493 MS.gene24641:CDS
GTAGAGTTGTTGAAGGAAGG+AGG 0.506426 7.3:+10240035 MS.gene24641:CDS
GTAGAGCTTGCTGGAACCAA+TGG 0.507341 7.3:+10240092 MS.gene24641:CDS
TATATTCGGCTATAACTTCA+GGG 0.510081 7.3:-10240484 None:intergenic
CTATACCAAAAGACAGCTGC+AGG 0.511625 7.3:+10239359 MS.gene24641:CDS
GTACTCTCAAGGCATGGGCT+GGG 0.512522 7.3:+10240675 MS.gene24641:CDS
GGGTGGTGAATAGGAGTTCA+CGG 0.514483 7.3:-10239289 None:intergenic
GAATGGCCTAGTTCCTATAG+TGG 0.514663 7.3:+10240292 MS.gene24641:CDS
TCTATCCACGAGAACGCCTA+TGG 0.515668 7.3:+10240239 MS.gene24641:CDS
CCCTTGTCAACCTTAATGCC+AGG 0.519001 7.3:-10240065 None:intergenic
CCCCGGTTCAGATTCTCAAA+AGG 0.519538 7.3:+10240457 MS.gene24641:CDS
TCAATTTGTTCATGGCATTG+AGG 0.520997 7.3:-10240598 None:intergenic
CTGAGGCAGTCAAAAGCACC+AGG 0.521879 7.3:-10239311 None:intergenic
CTTGCCGCTGATGAATCAAC+TGG 0.521919 7.3:+10239203 MS.gene24641:CDS
ATTGCCAATGCTGCTTACAT+TGG 0.521934 7.3:+10239161 MS.gene24641:CDS
TTCGTAGAGTTGTTGAAGGA+AGG 0.523483 7.3:+10240032 MS.gene24641:CDS
GCTGCCAATGTAAGCAGCAT+TGG 0.524935 7.3:-10239165 None:intergenic
AGCAGAGTACTCTCAAGGCA+TGG 0.525031 7.3:+10240669 MS.gene24641:CDS
CGGCAAGGATACCCTTCCCT+GGG 0.530056 7.3:-10239187 None:intergenic
TGAAAACATTAAGAAGGCTC+AGG 0.537239 7.3:+10240703 MS.gene24641:CDS
TCCTTCAACAACTCTACGAA+AGG 0.538329 7.3:-10240029 None:intergenic
TCCTGGCATTAAGGTTGACA+AGG 0.539046 7.3:+10240064 MS.gene24641:CDS
TGCCAGAAGTACTATGAAGC+TGG 0.539839 7.3:+10240155 MS.gene24641:CDS
GCTGTCATATGCCAAGAGAA+TGG 0.540178 7.3:+10240275 MS.gene24641:CDS
TTACATTGGCAGCCCAGGGA+AGG 0.541012 7.3:+10239175 MS.gene24641:CDS
ACAACAGCAGGAACTGCAGC+CGG 0.552294 7.3:-10240533 None:intergenic
TAGGAACTAGGCCATTCTCT+TGG 0.555043 7.3:-10240286 None:intergenic
TGGTGGACAGAGTGAGGAGG+AGG 0.559419 7.3:+10240565 MS.gene24641:CDS
GAAAGATGAAAACATTAAGA+AGG 0.560338 7.3:+10240697 MS.gene24641:CDS
AGCAGGAACTGCAGCCGGAA+CGG 0.563737 7.3:-10240528 None:intergenic
GAACTCCTATTCACCACCCC+TGG 0.564552 7.3:+10239293 MS.gene24641:CDS
CTAGACCATAGGCGTTCTCG+TGG 0.564863 7.3:-10240244 None:intergenic
AGCATTCATTTCTAGGTGCA+GGG 0.565780 7.3:+10240727 MS.gene24641:CDS
TACATTGGCAGCCCAGGGAA+GGG 0.567931 7.3:+10239176 MS.gene24641:CDS
AGACAGCTCAGATGGCTCGT+TGG 0.568425 7.3:-10240219 None:intergenic
CCACCACCCAAGGTTTGGAT+GGG 0.574869 7.3:+10240120 MS.gene24641:CDS
CTGCTTACATTGGCAGCCCA+GGG 0.576119 7.3:+10239171 MS.gene24641:CDS
AAGCCCAACATGGTAACCCC+CGG 0.580471 7.3:+10240440 MS.gene24641:CDS
GCAGAGTACTCTCAAGGCAT+GGG 0.580912 7.3:+10240670 MS.gene24641:CDS
CTGGTGCCCGATTTGCTAAG+TGG 0.581290 7.3:+10240174 MS.gene24641:CDS
AGTATTTGTAATCCTTAACA+TGG 0.585318 7.3:-10240820 None:intergenic
AATGCCATGAACAAATTGAA+GGG 0.590609 7.3:+10240602 MS.gene24641:CDS
TCGTGGATAGACAGCTCAGA+TGG 0.594167 7.3:-10240227 None:intergenic
TGTCATGAGATCCGTCCACT+AGG 0.594938 7.3:-10240325 None:intergenic
AATGGGGAAACCACCACCCA+AGG 0.600888 7.3:+10240110 MS.gene24641:CDS
AATTGAAGGGAAAGAAGCCG+TGG 0.606270 7.3:+10240615 MS.gene24641:CDS
CTTGTCTGGTGGACAGAGTG+AGG 0.610600 7.3:+10240559 MS.gene24641:CDS
AAGCCCATCCAAACCTTGGG+TGG 0.615549 7.3:-10240123 None:intergenic
GCTCGTTGGGACCAATCTTG+AGG 0.620621 7.3:-10240205 None:intergenic
GAGCCTGAAATCCTAGTGGA+CGG 0.627594 7.3:+10240314 MS.gene24641:CDS
CAGTTGATTCATCAGCGGCA+AGG 0.629317 7.3:-10239202 None:intergenic
GCAGTCAAAAGCACCAGGGG+TGG 0.632487 7.3:-10239306 None:intergenic
CTCAGAGGCACCATCACCAA+GGG 0.635565 7.3:-10240792 None:intergenic
GGTGATTCTACCCTTGGTGA+TGG 0.637135 7.3:+10240782 MS.gene24641:CDS
ACTTCAGCAGAGTACTCTCA+AGG 0.637395 7.3:+10240664 MS.gene24641:CDS
AAAGAGAAAGAAAGTGCCCA+CGG 0.650023 7.3:-10240632 None:intergenic
GATCATCATGTTCTACTCGA+AGG 0.653456 7.3:+10240407 MS.gene24641:CDS
CCTGGCATTAAGGTTGACAA+GGG 0.666501 7.3:+10240065 MS.gene24641:CDS
GTCTGGTGGACAGAGTGAGG+AGG 0.667820 7.3:+10240562 MS.gene24641:CDS
AGTGGAGCCTGAAATCCTAG+TGG 0.667846 7.3:+10240310 MS.gene24641:CDS
ACTCAGAGGCACCATCACCA+AGG 0.668916 7.3:-10240793 None:intergenic
GAGGCAGTCAAAAGCACCAG+GGG 0.673021 7.3:-10239309 None:intergenic
TGTACCAGTTGATTCATCAG+CGG 0.678605 7.3:-10239207 None:intergenic
CTTAACATGGAGAGACTCAG+AGG 0.681234 7.3:-10240807 None:intergenic
ATTGAAGGGAAAGAAGCCGT+GGG 0.685142 7.3:+10240616 MS.gene24641:CDS
ATATTCGGCTATAACTTCAG+GGG 0.697227 7.3:-10240483 None:intergenic
TTCTTCAAGAGCAAATACCA+AGG 0.700911 7.3:+10238458 MS.gene24641:CDS
AGCATAGCGAGCTAGACCAT+AGG 0.708256 7.3:-10240255 None:intergenic
TGAGGCAGTCAAAAGCACCA+GGG 0.711166 7.3:-10239310 None:intergenic
TGACATCAACAAGTGTGCTG+AGG 0.731985 7.3:+10240343 MS.gene24641:CDS
AGAGCTTGCTGGAACCAATG+GGG 0.738968 7.3:+10240094 MS.gene24641:CDS
CATATAAAATCACACCACTG+AGG 0.751130 7.3:-10239328 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTATTAATAA+TGG + chr7.3:10238740-10238759 MS.gene24641:intron 0.0%
!! CATTTAAAAAAATAAAGTTT+AGG - chr7.3:10239991-10240010 None:intergenic 10.0%
!! TAACATATATGAAAATAGTT+TGG + chr7.3:10239764-10239783 MS.gene24641:intron 15.0%
!!! TTTTAAATGTAATTAATTGC+AGG + chr7.3:10240002-10240021 MS.gene24641:intron 15.0%
!! TCTCAAATTATTATCTGTTT+CGG - chr7.3:10238873-10238892 None:intergenic 20.0%
!! TCTTTCTAACATCATAAATA+AGG - chr7.3:10239395-10239414 None:intergenic 20.0%
!!! AGATCAAGCAATTTATTTTA+GGG - chr7.3:10238787-10238806 None:intergenic 20.0%
!!! GTAAGATTTTAATCTTGTTT+TGG + chr7.3:10239005-10239024 MS.gene24641:intron 20.0%
!!! TAGATCAAGCAATTTATTTT+AGG - chr7.3:10238788-10238807 None:intergenic 20.0%
! AAATAAATTGCTTGATCTAC+CGG + chr7.3:10238789-10238808 MS.gene24641:intron 25.0%
! AAATAACCATTCGCATTAAA+AGG - chr7.3:10238645-10238664 None:intergenic 25.0%
! AATAACCATTCGCATTAAAA+GGG - chr7.3:10238644-10238663 None:intergenic 25.0%
! AGACATAAACTGAAAAACAA+GGG - chr7.3:10239523-10239542 None:intergenic 25.0%
! AGATTAACAAACTGCTATTA+CGG + chr7.3:10239079-10239098 MS.gene24641:intron 25.0%
! AGTATTTGTAATCCTTAACA+TGG - chr7.3:10240823-10240842 None:intergenic 25.0%
! ATGTTAAGTATTTCCTTACT+AGG + chr7.3:10239430-10239449 MS.gene24641:intron 25.0%
! CATATGTCAATACATAAGAA+AGG - chr7.3:10239482-10239501 None:intergenic 25.0%
! GAAAGATGAAAACATTAAGA+AGG + chr7.3:10240697-10240716 MS.gene24641:CDS 25.0%
! TAGACATAAACTGAAAAACA+AGG - chr7.3:10239524-10239543 None:intergenic 25.0%
! TCATTAGTTATTAGAACTTC+TGG - chr7.3:10239734-10239753 None:intergenic 25.0%
! TGAGAAAATGATATAATCTG+AGG + chr7.3:10238888-10238907 MS.gene24641:intron 25.0%
! TTAAGAGACAATAATAGCAT+CGG - chr7.3:10238524-10238543 None:intergenic 25.0%
!! AAAGTCTGAAGCATAATAAA+AGG - chr7.3:10238677-10238696 None:intergenic 25.0%
!! AAGTCTGAAGCATAATAAAA+GGG - chr7.3:10238676-10238695 None:intergenic 25.0%
!!! CATATTTTTTCAGTCTTCAT+CGG + chr7.3:10239963-10239982 MS.gene24641:intron 25.0%
!!! TCTTATTTTGTCATATTTGC+AGG - chr7.3:10238967-10238986 None:intergenic 25.0%
AATGCCATGAACAAATTGAA+GGG + chr7.3:10240602-10240621 MS.gene24641:CDS 30.0%
ATGAATCAACTGGTACAATT+GGG + chr7.3:10239213-10239232 MS.gene24641:CDS 30.0%
CAGTTTATGTCTAATGTTCT+TGG + chr7.3:10239531-10239550 MS.gene24641:intron 30.0%
CGATGAAGACTGAAAAAATA+TGG - chr7.3:10239965-10239984 None:intergenic 30.0%
CGGACATTATTAACAATGAA+AGG - chr7.3:10238504-10238523 None:intergenic 30.0%
GAAATAAGTTCAGCAACTAA+TGG - chr7.3:10239712-10239731 None:intergenic 30.0%
TATATTCGGCTATAACTTCA+GGG - chr7.3:10240487-10240506 None:intergenic 30.0%
!!! AGTTATACGCTGTTTTGAAA+AGG - chr7.3:10239793-10239812 None:intergenic 30.0%
!!! TTTCTTGTTTTCGTCGATTT+TGG + chr7.3:10238588-10238607 MS.gene24641:intron 30.0%
!!! TTTTTATCCTTTAGAGCTTC+TGG - chr7.3:10239871-10239890 None:intergenic 30.0%
AAGCTATCATAGAGAGACTA+TGG - chr7.3:10239638-10239657 None:intergenic 35.0%
ATATTCGGCTATAACTTCAG+GGG - chr7.3:10240486-10240505 None:intergenic 35.0%
CAATGCCATGAACAAATTGA+AGG + chr7.3:10240601-10240620 MS.gene24641:CDS 35.0%
CATATAAAATCACACCACTG+AGG - chr7.3:10239331-10239350 None:intergenic 35.0%
GACATTCTCAACATTAATGC+TGG - chr7.3:10239249-10239268 None:intergenic 35.0%
GACGAAAACAAGAAAGATAG+AGG - chr7.3:10238583-10238602 None:intergenic 35.0%
GAGTAAATGAGAGAATACCT+TGG - chr7.3:10238478-10238497 None:intergenic 35.0%
GATGAATCAACTGGTACAAT+TGG + chr7.3:10239212-10239231 MS.gene24641:CDS 35.0%
GTATATTCGGCTATAACTTC+AGG - chr7.3:10240488-10240507 None:intergenic 35.0%
TATAAAGGTGATTCTACCCT+TGG + chr7.3:10240776-10240795 MS.gene24641:CDS 35.0%
TATAGCCGAATATACCGTTA+AGG + chr7.3:10240493-10240512 MS.gene24641:CDS 35.0%
TCCAGATCAAAAGTCATGAT+AGG - chr7.3:10239041-10239060 None:intergenic 35.0%
TGAAAACATTAAGAAGGCTC+AGG + chr7.3:10240703-10240722 MS.gene24641:CDS 35.0%
TTCTTCAAGAGCAAATACCA+AGG + chr7.3:10238458-10238477 MS.gene24641:CDS 35.0%
TTGAGAATGTCGAAACAAAC+AGG + chr7.3:10239258-10239277 MS.gene24641:CDS 35.0%
! CAGTGGTGTGATTTTATATG+AGG + chr7.3:10239331-10239350 MS.gene24641:CDS 35.0%
! CTTATTTCCAGAAGCTCTAA+AGG + chr7.3:10239861-10239880 MS.gene24641:intron 35.0%
! CTTTCCCTTCAATTTGTTCA+TGG - chr7.3:10240609-10240628 None:intergenic 35.0%
! GCAACTTTGGGAACTTATAA+AGG + chr7.3:10240761-10240780 MS.gene24641:CDS 35.0%
! TATTATCTGTTTCGGTGTGT+CGG - chr7.3:10238865-10238884 None:intergenic 35.0%
! TCAATTTGTTCATGGCATTG+AGG - chr7.3:10240601-10240620 None:intergenic 35.0%
! TTGATCCCTTTTAATGCGAA+TGG + chr7.3:10238636-10238655 MS.gene24641:intron 35.0%
!! AACCTTTTGAGAATCTGAAC+CGG - chr7.3:10240462-10240481 None:intergenic 35.0%
!! TTGCTCATTGATTCCTAGTA+AGG - chr7.3:10239446-10239465 None:intergenic 35.0%
!!! ACTTTATTTTCAGTCGCCAT+TGG + chr7.3:10239830-10239849 MS.gene24641:intron 35.0%
ACCTTTCGTAGAGTTGTTGA+AGG + chr7.3:10240028-10240047 MS.gene24641:CDS 40.0%
ACTCCAGAACACATACAGAT+CGG - chr7.3:10238720-10238739 None:intergenic 40.0%
ATAATCCCAACCTACAGGTA+TGG - chr7.3:10238943-10238962 None:intergenic 40.0%
ATACCGATCTGTATGTGTTC+TGG + chr7.3:10238714-10238733 MS.gene24641:intron 40.0%
ATATTGAGCCTACGAAGACA+CGG + chr7.3:10238836-10238855 MS.gene24641:intron 40.0%
ATCAGCTCAACTATGAAGCA+CGG - chr7.3:10238919-10238938 None:intergenic 40.0%
CAAGGCCTTAACGGTATATT+CGG - chr7.3:10240501-10240520 None:intergenic 40.0%
CAGACTTTCTCGAATTGTCA+TGG + chr7.3:10238550-10238569 MS.gene24641:intron 40.0%
GATCATCATGTTCTACTCGA+AGG + chr7.3:10240407-10240426 MS.gene24641:CDS 40.0%
GCTAACTCACAAGCAACTTT+GGG + chr7.3:10240749-10240768 MS.gene24641:CDS 40.0%
TAACAAACTGCTATTACGGC+AGG + chr7.3:10239083-10239102 MS.gene24641:intron 40.0%
TCCTTCAACAACTCTACGAA+AGG - chr7.3:10240032-10240051 None:intergenic 40.0%
TGATACCATACCTGTAGGTT+GGG + chr7.3:10238935-10238954 MS.gene24641:intron 40.0%
TTCGTAGAGTTGTTGAAGGA+AGG + chr7.3:10240032-10240051 MS.gene24641:CDS 40.0%
! AAACAAGAGCACAAGCATTC+CGG - chr7.3:10238811-10238830 None:intergenic 40.0%
! AAGCATTCATTTCTAGGTGC+AGG + chr7.3:10240726-10240745 MS.gene24641:CDS 40.0%
! AGAGCTTCTGGAAATAAGCT+CGG - chr7.3:10239859-10239878 None:intergenic 40.0%
! AGCATTCATTTCTAGGTGCA+GGG + chr7.3:10240727-10240746 MS.gene24641:CDS 40.0%
! ATTGCCAATGCTGCTTACAT+TGG + chr7.3:10239161-10239180 MS.gene24641:CDS 40.0%
! GCCTATCATGACTTTTGATC+TGG + chr7.3:10239037-10239056 MS.gene24641:intron 40.0%
! TGGGCACTTTCTTTCTCTTT+TGG + chr7.3:10240635-10240654 MS.gene24641:CDS 40.0%
! TGTACCAGTTGATTCATCAG+CGG - chr7.3:10239210-10239229 None:intergenic 40.0%
!! AAAGAGAAAGAAAGTGCCCA+CGG - chr7.3:10240635-10240654 None:intergenic 40.0%
!! ACCTTTTGAGAATCTGAACC+GGG - chr7.3:10240461-10240480 None:intergenic 40.0%
!! CTCAGGAAGCATTCATTTCT+AGG + chr7.3:10240720-10240739 MS.gene24641:CDS 40.0%
!!! AACTCTTTTGAAGCCCAACA+TGG + chr7.3:10240430-10240449 MS.gene24641:CDS 40.0%
AATTGAAGGGAAAGAAGCCG+TGG + chr7.3:10240615-10240634 MS.gene24641:CDS 45.0%
AGGAGTTCTTCCTGGCATTA+AGG + chr7.3:10240055-10240074 MS.gene24641:CDS 45.0%
AGGATTTCAGGCTCCACTAT+AGG - chr7.3:10240308-10240327 None:intergenic 45.0%
ATTGAAGGGAAAGAAGCCGT+GGG + chr7.3:10240616-10240635 MS.gene24641:CDS 45.0%
CACCAGCTTCATAGTACTTC+TGG - chr7.3:10240160-10240179 None:intergenic 45.0%
CCTGGCATTAAGGTTGACAA+GGG + chr7.3:10240065-10240084 MS.gene24641:CDS 45.0%
CTATACCAAAAGACAGCTGC+AGG + chr7.3:10239359-10239378 MS.gene24641:CDS 45.0%
CTCTGAGTCTCTCCATGTTA+AGG + chr7.3:10240808-10240827 MS.gene24641:CDS 45.0%
CTGATACCATACCTGTAGGT+TGG + chr7.3:10238934-10238953 MS.gene24641:intron 45.0%
CTTAACATGGAGAGACTCAG+AGG - chr7.3:10240810-10240829 None:intergenic 45.0%
GAAATAAGCTCGGCAACCAA+TGG - chr7.3:10239849-10239868 None:intergenic 45.0%
GAATGGCCTAGTTCCTATAG+TGG + chr7.3:10240292-10240311 MS.gene24641:CDS 45.0%
GCTGTCATATGCCAAGAGAA+TGG + chr7.3:10240275-10240294 MS.gene24641:CDS 45.0%
GGCTAACTCACAAGCAACTT+TGG + chr7.3:10240748-10240767 MS.gene24641:CDS 45.0%
GTAGAGTTGTTGAAGGAAGG+AGG + chr7.3:10240035-10240054 MS.gene24641:CDS 45.0%
TAGGAACTAGGCCATTCTCT+TGG - chr7.3:10240289-10240308 None:intergenic 45.0%
TCCTGGCATTAAGGTTGACA+AGG + chr7.3:10240064-10240083 MS.gene24641:CDS 45.0%
TGACATCAACAAGTGTGCTG+AGG + chr7.3:10240343-10240362 MS.gene24641:CDS 45.0%
TGAGCTGATACCATACCTGT+AGG + chr7.3:10238930-10238949 MS.gene24641:intron 45.0%
! AAGTACCTGCAGCTGTCTTT+TGG - chr7.3:10239367-10239386 None:intergenic 45.0%
! ACTTCAGCAGAGTACTCTCA+AGG + chr7.3:10240664-10240683 MS.gene24641:CDS 45.0%
!! CCTTTTGAGAATCTGAACCG+GGG - chr7.3:10240460-10240479 None:intergenic 45.0%
!! CTTTTGAGAATCTGAACCGG+GGG - chr7.3:10240459-10240478 None:intergenic 45.0%
!! TAGAGCTTGCTGGAACCAAT+GGG + chr7.3:10240093-10240112 MS.gene24641:CDS 45.0%
!! TGCCAGAAGTACTATGAAGC+TGG + chr7.3:10240155-10240174 MS.gene24641:CDS 45.0%
!! TGGTACAATTGGGAAGCGTT+TGG + chr7.3:10239223-10239242 MS.gene24641:CDS 45.0%
AAGGAAGGAGGAGTTCTTCC+TGG + chr7.3:10240047-10240066 MS.gene24641:CDS 50.0%
ACCAAGCCCATCCAAACCTT+GGG - chr7.3:10240129-10240148 None:intergenic 50.0%
AGCACGCCACTTAGCAAATC+GGG - chr7.3:10240183-10240202 None:intergenic 50.0%
AGCATAGCGAGCTAGACCAT+AGG - chr7.3:10240258-10240277 None:intergenic 50.0%
AGTGGAGCCTGAAATCCTAG+TGG + chr7.3:10240310-10240329 MS.gene24641:CDS 50.0%
CAGCACGCCACTTAGCAAAT+CGG - chr7.3:10240184-10240203 None:intergenic 50.0%
CAGGCATAATCCCAACCTAC+AGG - chr7.3:10238948-10238967 None:intergenic 50.0%
CAGGCTCCACTATAGGAACT+AGG - chr7.3:10240301-10240320 None:intergenic 50.0%
CCAGACAAGAACACAACAGC+AGG - chr7.3:10240548-10240567 None:intergenic 50.0%
CCCCGGTTCAGATTCTCAAA+AGG + chr7.3:10240457-10240476 MS.gene24641:CDS 50.0%
CCCTTGTCAACCTTAATGCC+AGG - chr7.3:10240068-10240087 None:intergenic 50.0%
CCTGCTGTTGTGTTCTTGTC+TGG + chr7.3:10240545-10240564 MS.gene24641:CDS 50.0%
CTTGCCGCTGATGAATCAAC+TGG + chr7.3:10239203-10239222 MS.gene24641:CDS 50.0%
GAGCCTGAAATCCTAGTGGA+CGG + chr7.3:10240314-10240333 MS.gene24641:CDS 50.0%
GATCCGTCCACTAGGATTTC+AGG - chr7.3:10240320-10240339 None:intergenic 50.0%
GCTGCCAATGTAAGCAGCAT+TGG - chr7.3:10239168-10239187 None:intergenic 50.0%
GCTGTTGTGTTCTTGTCTGG+TGG + chr7.3:10240548-10240567 MS.gene24641:CDS 50.0%
GGGTGGTGAATAGGAGTTCA+CGG - chr7.3:10239292-10239311 None:intergenic 50.0%
GGTGATTCTACCCTTGGTGA+TGG + chr7.3:10240782-10240801 MS.gene24641:CDS 50.0%
TCGTGGATAGACAGCTCAGA+TGG - chr7.3:10240230-10240249 None:intergenic 50.0%
TCTATCCACGAGAACGCCTA+TGG + chr7.3:10240239-10240258 MS.gene24641:CDS 50.0%
TGAGGTGACTGAACGTGTTC+TGG + chr7.3:10240361-10240380 MS.gene24641:CDS 50.0%
TGTCATGAGATCCGTCCACT+AGG - chr7.3:10240328-10240347 None:intergenic 50.0%
! AGCAGAGTACTCTCAAGGCA+TGG + chr7.3:10240669-10240688 MS.gene24641:CDS 50.0%
! CAGTTGATTCATCAGCGGCA+AGG - chr7.3:10239205-10239224 None:intergenic 50.0%
! GCAGAGTACTCTCAAGGCAT+GGG + chr7.3:10240670-10240689 MS.gene24641:CDS 50.0%
!! AGAGCTTGCTGGAACCAATG+GGG + chr7.3:10240094-10240113 MS.gene24641:CDS 50.0%
!! GTAGAGCTTGCTGGAACCAA+TGG + chr7.3:10240092-10240111 MS.gene24641:CDS 50.0%
!! TGAGGCAGTCAAAAGCACCA+GGG - chr7.3:10239313-10239332 None:intergenic 50.0%
AAGCACCAGGGGTGGTGAAT+AGG - chr7.3:10239301-10239320 None:intergenic 55.0%
AAGCCCAACATGGTAACCCC+CGG + chr7.3:10240440-10240459 MS.gene24641:CDS 55.0%
AAGCCCATCCAAACCTTGGG+TGG - chr7.3:10240126-10240145 None:intergenic 55.0%
AATGGGGAAACCACCACCCA+AGG + chr7.3:10240110-10240129 MS.gene24641:CDS 55.0%
ACAACAGCAGGAACTGCAGC+CGG - chr7.3:10240536-10240555 None:intergenic 55.0%
ACCACCACCCAAGGTTTGGA+TGG + chr7.3:10240119-10240138 MS.gene24641:CDS 55.0%
AGACAGCTCAGATGGCTCGT+TGG - chr7.3:10240222-10240241 None:intergenic 55.0%
AGTACTCTCAAGGCATGGGC+TGG + chr7.3:10240674-10240693 MS.gene24641:CDS 55.0%
CCACCACCCAAGGTTTGGAT+GGG + chr7.3:10240120-10240139 MS.gene24641:CDS 55.0%
CTAGACCATAGGCGTTCTCG+TGG - chr7.3:10240247-10240266 None:intergenic 55.0%
CTGCTTACATTGGCAGCCCA+GGG + chr7.3:10239171-10239190 MS.gene24641:CDS 55.0%
GAACCGGGGGTTACCATGTT+GGG - chr7.3:10240446-10240465 None:intergenic 55.0%
GAACTCCTATTCACCACCCC+TGG + chr7.3:10239293-10239312 MS.gene24641:CDS 55.0%
GACAGCTCAGATGGCTCGTT+GGG - chr7.3:10240221-10240240 None:intergenic 55.0%
GACCAAGCCCATCCAAACCT+TGG - chr7.3:10240130-10240149 None:intergenic 55.0%
GCTCGTTGGGACCAATCTTG+AGG - chr7.3:10240208-10240227 None:intergenic 55.0%
GGAAACCACCACCCAAGGTT+TGG + chr7.3:10240115-10240134 MS.gene24641:CDS 55.0%
GGTTCGCTGCAAGGCCTTAA+CGG - chr7.3:10240510-10240529 None:intergenic 55.0%
GTACTCTCAAGGCATGGGCT+GGG + chr7.3:10240675-10240694 MS.gene24641:CDS 55.0%
TACATTGGCAGCCCAGGGAA+GGG + chr7.3:10239176-10239195 MS.gene24641:CDS 55.0%
TGAACCGGGGGTTACCATGT+TGG - chr7.3:10240447-10240466 None:intergenic 55.0%
TGGCGTGCTGTCCTCAAGAT+TGG + chr7.3:10240194-10240213 MS.gene24641:CDS 55.0%
TTACATTGGCAGCCCAGGGA+AGG + chr7.3:10239175-10239194 MS.gene24641:CDS 55.0%
! ACCCAAGGTTTGGATGGGCT+TGG + chr7.3:10240125-10240144 MS.gene24641:CDS 55.0%
! CTTGTCTGGTGGACAGAGTG+AGG + chr7.3:10240559-10240578 MS.gene24641:CDS 55.0%
! TTGGGTGGTGGTTTCCCCAT+TGG - chr7.3:10240111-10240130 None:intergenic 55.0%
!! AAGGGCACTGTAGAGCTTGC+TGG + chr7.3:10240083-10240102 MS.gene24641:CDS 55.0%
!! ACTCAGAGGCACCATCACCA+AGG - chr7.3:10240796-10240815 None:intergenic 55.0%
!! CTCAGAGGCACCATCACCAA+GGG - chr7.3:10240795-10240814 None:intergenic 55.0%
!! CTGAGGCAGTCAAAAGCACC+AGG - chr7.3:10239314-10239333 None:intergenic 55.0%
!! CTGGTGCCCGATTTGCTAAG+TGG + chr7.3:10240174-10240193 MS.gene24641:CDS 55.0%
!! GAGGCAGTCAAAAGCACCAG+GGG - chr7.3:10239312-10239331 None:intergenic 55.0%
!! GGTGCTTTTGACTGCCTCAG+TGG + chr7.3:10239314-10239333 MS.gene24641:CDS 55.0%
AGCAGGAACTGCAGCCGGAA+CGG - chr7.3:10240531-10240550 None:intergenic 60.0%
CCCATCCAAACCTTGGGTGG+TGG - chr7.3:10240123-10240142 None:intergenic 60.0%
CGGCAAGGATACCCTTCCCT+GGG - chr7.3:10239190-10239209 None:intergenic 60.0%
GCTGCTTACATTGGCAGCCC+AGG + chr7.3:10239170-10239189 MS.gene24641:CDS 60.0%
! GTCGGTGTCCGTGTCTTCGT+AGG - chr7.3:10238847-10238866 None:intergenic 60.0%
! GTCTGGTGGACAGAGTGAGG+AGG + chr7.3:10240562-10240581 MS.gene24641:CDS 60.0%
! TGGTGGACAGAGTGAGGAGG+AGG + chr7.3:10240565-10240584 MS.gene24641:CDS 60.0%
!! GCAGTCAAAAGCACCAGGGG+TGG - chr7.3:10239309-10239328 None:intergenic 60.0%
AGCCGGAACGGTTCGCTGCA+AGG - chr7.3:10240519-10240538 None:intergenic 65.0%
GCGGCAAGGATACCCTTCCC+TGG - chr7.3:10239191-10239210 None:intergenic 65.0%
GGCCTTGCAGCGAACCGTTC+CGG + chr7.3:10240514-10240533 MS.gene24641:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 10238452 10240844 10238452 ID=MS.gene24641
chr7.3 mRNA 10238452 10240844 10238452 ID=MS.gene24641.t1;Parent=MS.gene24641
chr7.3 exon 10238452 10238479 10238452 ID=MS.gene24641.t1.exon1;Parent=MS.gene24641.t1
chr7.3 CDS 10238452 10238479 10238452 ID=cds.MS.gene24641.t1;Parent=MS.gene24641.t1
chr7.3 exon 10239153 10239380 10239153 ID=MS.gene24641.t1.exon2;Parent=MS.gene24641.t1
chr7.3 CDS 10239153 10239380 10239153 ID=cds.MS.gene24641.t1;Parent=MS.gene24641.t1
chr7.3 exon 10240024 10240844 10240024 ID=MS.gene24641.t1.exon3;Parent=MS.gene24641.t1
chr7.3 CDS 10240024 10240844 10240024 ID=cds.MS.gene24641.t1;Parent=MS.gene24641.t1
Gene Sequence

>MS.gene24641

ATGTCTTTCTTCAAGAGCAAATACCAAGGTATTCTCTCATTTACTCTTGCCTTTCATTGTTAATAATGTCCGATGCTATTATTGTCTCTTAATCTTGTCAGACTTTCTCGAATTGTCATGGATTTTTGCCTCTATCTTTCTTGTTTTCGTCGATTTTGGTTGAACAATTATGCTGTATCAAAATTTGATCCCTTTTAATGCGAATGGTTATTTTATTATAACCCTTTTATTATGCTTCAGACTTTGTGATCTTAAGATTTTGATACCGATCTGTATGTGTTCTGGAGTTTTTTTTTTTTTATTAATAATGGAATACTTTTTGATTCTGTGTGCCCTAAAATAAATTGCTTGATCTACCGGAATGCTTGTGCTCTTGTTTTCATGATATTGAGCCTACGAAGACACGGACACCGACACACCGAAACAGATAATAATTTGAGAAAATGATATAATCTGAGGAGTGTCCGTGCTTCATAGTTGAGCTGATACCATACCTGTAGGTTGGGATTATGCCTGCAAATATGACAAAATAAGAACACTTTATTTGTATTATGTAAGATTTTAATCTTGTTTTGGTTTTGTGATGCCTATCATGACTTTTGATCTGGATTGAAATAAAATTATTAGAGATTAACAAACTGCTATTACGGCAGGATTGAAAAGATATGTAATCTACTAGTTAATGTGCTGATGTATTGCAGATGAACTCATTGCCAATGCTGCTTACATTGGCAGCCCAGGGAAGGGTATCCTTGCCGCTGATGAATCAACTGGTACAATTGGGAAGCGTTTGGCCAGCATTAATGTTGAGAATGTCGAAACAAACAGGCGTGCTCTCCGTGAACTCCTATTCACCACCCCTGGTGCTTTTGACTGCCTCAGTGGTGTGATTTTATATGAGGAAACTCTATACCAAAAGACAGCTGCAGGTACTTATGCTCCTTATTTATGATGTTAGAAAGATATATTTTGCAGTACATGTTAAGTATTTCCTTACTAGGAATCAATGAGCAAAATCTTACTTAAACCTTTCTTATGTATTGACATATGTTCTTAGATATAACTATTCCCTTGTTTTTCAGTTTATGTCTAATGTTCTTGGATTGACTTCTTTGAGCTTATCTAGTCACGTAAGTATTTGTGAGACTGTTAAGAGAGTTTATGATATAAGCTTATGACATATCCATAGTCTCTCTATGATAGCTTTTAAAATCAACATATAACTTATATAAAACAAATTTACTTTATTTTAAGTTGCCATTAGTTGCTGAACTTATTTCCAGAAGTTCTAATAACTAATGAAAACAACTTATAACATATATGAAAATAGTTTGGATACCTTTTCAAAACAGCGTATAACTTATATAAAAACAAATTTACTTTATTTTCAGTCGCCATTGGTTGCCGAGCTTATTTCCAGAAGCTCTAAAGGATAAAAAATGAAAACAACTTATAACTTATATGAAAACAATTTGACTTTAATTTATATTTTGTTATAACTTTAATCATGCCATATTTTTTCAGTCTTCATCGGCTCCTAAACTTTATTTTTTTAAATGTAATTAATTGCAGGAAAACCTTTCGTAGAGTTGTTGAAGGAAGGAGGAGTTCTTCCTGGCATTAAGGTTGACAAGGGCACTGTAGAGCTTGCTGGAACCAATGGGGAAACCACCACCCAAGGTTTGGATGGGCTTGGTCAGCGTTGCCAGAAGTACTATGAAGCTGGTGCCCGATTTGCTAAGTGGCGTGCTGTCCTCAAGATTGGTCCCAACGAGCCATCTGAGCTGTCTATCCACGAGAACGCCTATGGTCTAGCTCGCTATGCTGTCATATGCCAAGAGAATGGCCTAGTTCCTATAGTGGAGCCTGAAATCCTAGTGGACGGATCTCATGACATCAACAAGTGTGCTGAGGTGACTGAACGTGTTCTGGCTGCGTGCTACAAAGCTCTAAGTGATCATCATGTTCTACTCGAAGGAACTCTTTTGAAGCCCAACATGGTAACCCCCGGTTCAGATTCTCAAAAGGTTGCCCCTGAAGTTATAGCCGAATATACCGTTAAGGCCTTGCAGCGAACCGTTCCGGCTGCAGTTCCTGCTGTTGTGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCAACACTCAACCTCAATGCCATGAACAAATTGAAGGGAAAGAAGCCGTGGGCACTTTCTTTCTCTTTTGGAAGAGCACTTCAGCAGAGTACTCTCAAGGCATGGGCTGGGAAAGATGAAAACATTAAGAAGGCTCAGGAAGCATTCATTTCTAGGTGCAGGGCTAACTCACAAGCAACTTTGGGAACTTATAAAGGTGATTCTACCCTTGGTGATGGTGCCTCTGAGTCTCTCCATGTTAAGGATTACAAATACTAA

Protein sequence

>MS.gene24641.t1

MSFFKSKYQDELIANAAYIGSPGKGILAADESTGTIGKRLASINVENVETNRRALRELLFTTPGAFDCLSGVILYEETLYQKTAAGKPFVELLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLGQRCQKYYEAGARFAKWRAVLKIGPNEPSELSIHENAYGLARYAVICQENGLVPIVEPEILVDGSHDINKCAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDSQKVAPEVIAEYTVKALQRTVPAAVPAVVFLSGGQSEEEATLNLNAMNKLKGKKPWALSFSFGRALQQSTLKAWAGKDENIKKAQEAFISRCRANSQATLGTYKGDSTLGDGASESLHVKDYKY