AlfalfaGEDB | MS.gene24711

M. sativa cultivar XinJiangDaYe / MS.gene24711

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24711.t1	XP_013450122.1	96.5	257	7	2	1	255	1	257	9.30E-140	506.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24711.t1	Q9FMR3	46.0	248	118	3	2	249	3	234	2.2e-57	223.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24711.t1	A0A072UEA7	96.5	257	7	2	1	255	1	257	6.7e-140	506.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24711.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050282	MS.gene24711	0.966316	9.29E-126	-1.69E-46
MS.gene050283	MS.gene24711	0.963554	3.16E-122	-1.69E-46
MS.gene050285	MS.gene24711	0.94222	1.06E-101	-1.69E-46
MS.gene050286	MS.gene24711	0.958527	1.89E-116	-1.69E-46
MS.gene051751	MS.gene24711	0.980028	2.78E-149	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24711.t1	MTR_7g105170	96.498	257	7	2	1	255	1	257	0.0	516
MS.gene24711.t1	MTR_2g086690	48.846	260	112	7	1	250	1	249	3.92e-80	241
MS.gene24711.t1	MTR_4g052620	61.017	177	66	2	2	178	3	176	9.92e-75	228
MS.gene24711.t1	MTR_4g075980	44.186	172	76	6	6	174	17	171	2.04e-42	146
MS.gene24711.t1	MTR_5g041940	39.645	169	94	4	4	172	3	163	8.57e-38	133
MS.gene24711.t1	MTR_4g134460	42.683	164	81	5	2	165	52	202	1.54e-37	137
MS.gene24711.t1	MTR_2g093810	42.262	168	87	5	4	169	14	173	2.46e-36	131
MS.gene24711.t1	MTR_4g081870	39.766	171	95	4	4	174	9	171	3.84e-36	129
MS.gene24711.t1	MTR_6g011860	37.791	172	97	5	1	168	12	177	1.29e-35	130
MS.gene24711.t1	MTR_8g094580	33.778	225	127	9	4	221	7	216	5.90e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24711.t1	AT5G22380	45.968	248	118	3	2	249	3	234	1.31e-75	229
MS.gene24711.t1	AT3G44350	45.850	253	107	6	7	249	8	240	5.53e-72	220
MS.gene24711.t1	AT3G44350	52.147	163	73	3	2	164	3	160	1.85e-58	183
MS.gene24711.t1	AT2G17040	43.931	173	75	6	6	174	8	162	5.86e-42	144
MS.gene24711.t1	AT4G17980	43.114	167	81	7	4	166	6	162	3.17e-39	137
MS.gene24711.t1	AT4G17980	43.114	167	81	7	4	166	6	162	5.45e-39	137
MS.gene24711.t1	AT2G02450	44.025	159	76	5	6	164	53	198	1.17e-38	139
MS.gene24711.t1	AT2G02450	44.025	159	76	5	6	164	53	198	1.95e-38	139
MS.gene24711.t1	AT5G08790	36.702	188	105	5	3	187	6	182	1.27e-37	134
MS.gene24711.t1	AT4G27410	38.037	163	89	5	3	165	13	163	4.18e-36	130

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Find 58 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGCTCTTCTTCTGTA+GGG	0.541701	7.3:+9524846	None:intergenic
AACATGATTAGGAGATCCAG+TGG	0.656277	7.3:+9524197	None:intergenic
AAGAGGATGTTTCATCTAAC+TGG	0.287039	7.3:+9524064	None:intergenic
ACATGATGTTCAAATCTCGA+TGG	0.619431	7.3:-9523425	MS.gene24711:CDS
ACATGGGTTGTAACCCTCCT+TGG	0.505741	7.3:+9523487	None:intergenic
ACCCATGTTCAAAATGCTCA+AGG	0.588355	7.3:-9523472	MS.gene24711:CDS
ACTGGGTACTGGAAAGCCAC+TGG	0.577981	7.3:-9524213	MS.gene24711:CDS
AGAGGCAAGTATGAGAGACA+CGG	0.662506	7.3:-9524307	MS.gene24711:CDS
AGCAAGTGGATTGGTTCTTA+GGG	0.460177	7.3:-9523282	MS.gene24711:CDS
AGCTTCTCCAACCTCTTGTG+AGG	0.507371	7.3:+9523348	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGCTCTTCTTCTGTA+GGG	+	chr7.3:9523305-9523324	None:intergenic	30.0%
ACCAATATGTACGAAATTCA+AGG	+	chr7.3:9524244-9524263	None:intergenic	30.0%
ACCTTGAATTTCGTACATAT+TGG	-	chr7.3:9524240-9524259	MS.gene24711:CDS	30.0%
ATATGATATGTACGTACCTT+AGG	+	chr7.3:9524124-9524143	None:intergenic	30.0%
CAAATGGAAAGAAAACTGAT+TGG	-	chr7.3:9524038-9524057	MS.gene24711:intron	30.0%
CATAATCAGCAATATCCATT+TGG	+	chr7.3:9524828-9524847	None:intergenic	30.0%
TATCATATGCATCTTGAACT+AGG	-	chr7.3:9524136-9524155	MS.gene24711:CDS	30.0%
TATCTTCACAATATGCTTGA+AGG	-	chr7.3:9523330-9523349	MS.gene24711:CDS	30.0%
TATGATCCACGATATAAAAC+TGG	+	chr7.3:9524434-9524453	None:intergenic	30.0%
TCATGGAAAGATTTATACGT+GGG	+	chr7.3:9523425-9523444	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	9523270	9524900	9523270	ID=MS.gene24711
chr7.3	mRNA	9523270	9524900	9523270	ID=MS.gene24711.t1;Parent=MS.gene24711
chr7.3	exon	9524744	9524900	9524744	ID=MS.gene24711.t1.exon1;Parent=MS.gene24711.t1
chr7.3	CDS	9524744	9524900	9524744	ID=cds.MS.gene24711.t1;Parent=MS.gene24711.t1
chr7.3	exon	9524044	9524339	9524044	ID=MS.gene24711.t1.exon2;Parent=MS.gene24711.t1
chr7.3	CDS	9524044	9524339	9524044	ID=cds.MS.gene24711.t1;Parent=MS.gene24711.t1
chr7.3	exon	9523270	9523584	9523270	ID=MS.gene24711.t1.exon3;Parent=MS.gene24711.t1
chr7.3	CDS	9523270	9523584	9523270	ID=cds.MS.gene24711.t1;Parent=MS.gene24711.t1

Gene Sequence

>MS.gene24711

ATGGACAATATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAAGAGCTTATTTCGTTCTATCTTCACAATATGCTTGAAGGAGAGAAAGAATACACGATTCGTACCGTTATACCAGTCGTTAATATATACGATTACAATCCATCACAACTCCCACGTATAAATCTTTCCATGACTTGACTACGTTATTGTTTTTCATTCTTCTTCTTTTCATTTTTGAATCTAAATGTGCTAGAATTGATAGATCTCTAACTTTGGAAGTAGACATTATCATAATACTTTTATTTAATGTTTAGTTACAATAAGATATTACTAGGTATAATTGTTTATCATAACTCAAAAAAAAAAAAAAGGTATTATTGTTTATCAATATTTTGAATAAAAAAACCAGTTAAGTATTTTGAATAAAAAATTATCTTCATTTTGCATCATTTCATGTAAAATTTCTATATCATTGTGAAAGTCTAATTTATAATTTATTTGTCCCGAAAAAATCCATATATTGCAATATTGTAAATTAGACAATTGATTTTTTTTTCTTATAAAATTATTGGTTTTCAGAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAACAATGGTTCTTTTTCATTCCAAGGCAAGAAAGTGAAGTGAGAGGAGGAAGACCAAAGCGTCTCACCAACACTGGGTACTGGAAAGCCACTGGATCTCCTAATCATGTTTATTCTTCAGATAATCGCATCATTGGAGTGAAAAGAACTATGGTTTTCTATAGTGGAAGAGCTCCAAATGGAAAGAAAACTGATTGGAAAATGAACGAGTATAAGGCCATCCAGTTAGATGAAACATCCTCTTCAAACAAAGTAGCTCCTAAGGTACGTACATATCATATGCATCTTGAACTAGGCCTAAAAAAATAAAGTCTGTTAGATTGATTTCTATGTATACAACCTGATTTATATTGGTTTGAATTTTGAAACTCTAGAGAACCTTGAATTTCGTACATATTGGTTAAGCTAGCATTACGATTACAACGTGCAATTTTATTGTATATATGCATTATGAAGTCTAATTTAGTTAATTTGTTTTACGGGGTCAATCTAATAAGGCGTGATTTTCATGGGAAAAAATGGCAGGGTCTATCTTTATTCTTTTTTTGAGGTTCATATTAGATGGAAACCAGTTTTATATCGTGGATCATAATTTCGCATTATTTGTTTTGTTTTGTTTTGTTTTGTTTTACAGGTCAAATGAGAAGCTAGCTAGCTAATTAACCTTTTGATTAATACTGGCTAATAAAAGAAATTTGATATTGATTATTTAATTGGTTGCAGTTAAGGCAAGAATTCAGTTTATGCCGAGTGTACAAAAAATCAAAGTGCTTAAGGGCATTTGATAGACGACCACCACCAAGGAGGGTTACAACCCATGTTCAAAATGCTCAAGGGCACCAGAAAGATTCAACTTGCGAACATGATGTTCAAATCTCGATGGACATAAGTGCAACAAACTCACCAGAGAGCTCTTCCTCTATAGACCATGTTCAACCCTCACAAGAGGTTGGAGAAGCTAGCCAAATGGATATTGCTGATTATGATGCTTTGTTGGATTGGGAGCAAGTGGATTGGTTCTTAGGGTCGGAGCCATAA

Protein sequence

>MS.gene24711.t1

MDNMPPGYRFYPTEEELISFYLHNMLEGEKEYTIRTVIPVVNIYDYNPSQLPQISGEASMRDTEQWFFFIPRQESEVRGGRPKRLTNTGYWKATGSPNHVYSSDNRIIGVKRTMVFYSGRAPNGKKTDWKMNEYKAIQLDETSSSNKVAPKLRQEFSLCRVYKKSKCLRAFDRRPPPRRVTTHVQNAQGHQKDSTCEHDVQISMDISATNSPESSSSIDHVQPSQEVGEASQMDIADYDALLDWEQVDWFLGSEP