Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051834.t1 | KEH32481.1 | 97.3 | 845 | 23 | 0 | 1 | 845 | 231 | 1075 | 0.00E+00 | 1592.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051834.t1 | A0A072UT14 | 97.3 | 845 | 23 | 0 | 1 | 845 | 231 | 1075 | 0.0e+00 | 1592.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051209 | MS.gene051834 | 0.810959 | 8.89E-51 | -1.69E-46 |
| MS.gene051834 | MS.gene051835 | 0.944452 | 1.90E-103 | -1.69E-46 |
| MS.gene051834 | MS.gene053486 | 0.817555 | 3.10E-52 | -1.69E-46 |
| MS.gene051834 | MS.gene056519 | 0.804824 | 1.79E-49 | -1.69E-46 |
| MS.gene051834 | MS.gene056622 | 0.801547 | 8.55E-49 | -1.69E-46 |
| MS.gene051834 | MS.gene062059 | 0.810526 | 1.10E-50 | -1.69E-46 |
| MS.gene051834 | MS.gene064854 | 0.805311 | 1.42E-49 | -1.69E-46 |
| MS.gene051834 | MS.gene06488 | 0.81123 | 7.77E-51 | -1.69E-46 |
| MS.gene051834 | MS.gene070003 | 0.809319 | 2.01E-50 | -1.69E-46 |
| MS.gene051834 | MS.gene07279 | 0.821235 | 4.50E-53 | -1.69E-46 |
| MS.gene051834 | MS.gene08954 | 0.818963 | 1.49E-52 | -1.69E-46 |
| MS.gene051834 | MS.gene09290 | 0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene051834 | MS.gene09980 | 0.836332 | 9.96E-57 | -1.69E-46 |
| MS.gene051834 | MS.gene20801 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene051834 | MS.gene20851 | 0.837922 | 3.91E-57 | -1.69E-46 |
| MS.gene051834 | MS.gene24853 | 0.852869 | 3.48E-61 | -1.69E-46 |
| MS.gene051834 | MS.gene24854 | 0.890991 | 5.97E-74 | -1.69E-46 |
| MS.gene051834 | MS.gene25985 | 0.851452 | 8.79E-61 | -1.69E-46 |
| MS.gene051834 | MS.gene26030 | 0.822763 | 1.99E-53 | -1.69E-46 |
| MS.gene051834 | MS.gene32949 | 0.828881 | 7.02E-55 | -1.69E-46 |
| MS.gene051834 | MS.gene38383 | 0.819352 | 1.21E-52 | -1.69E-46 |
| MS.gene051834 | MS.gene39634 | 0.821715 | 3.48E-53 | -1.69E-46 |
| MS.gene051834 | MS.gene39937 | 0.817536 | 3.13E-52 | -1.69E-46 |
| MS.gene051834 | MS.gene40635 | 0.819579 | 1.08E-52 | -1.69E-46 |
| MS.gene051834 | MS.gene42558 | 0.81907 | 1.41E-52 | -1.69E-46 |
| MS.gene051834 | MS.gene49370 | 0.831611 | 1.51E-55 | -1.69E-46 |
| MS.gene051834 | MS.gene50089 | 0.862817 | 3.87E-64 | -1.69E-46 |
| MS.gene051834 | MS.gene50090 | 0.860375 | 2.16E-63 | -1.69E-46 |
| MS.gene051834 | MS.gene50553 | 0.829978 | 3.80E-55 | -1.69E-46 |
| MS.gene051834 | MS.gene54212 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene051834 | MS.gene57382 | 0.842847 | 2.01E-58 | -1.69E-46 |
| MS.gene051834 | MS.gene70224 | 0.852 | 6.15E-61 | -1.69E-46 |
| MS.gene051834 | MS.gene70750 | 0.808944 | 2.41E-50 | -1.69E-46 |
| MS.gene051834 | MS.gene75907 | 0.801148 | 1.03E-48 | -1.69E-46 |
| MS.gene051834 | MS.gene95917 | 0.834036 | 3.78E-56 | -1.69E-46 |
| MS.gene051834 | MS.gene98118 | 0.830732 | 2.49E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051834.t1 | MTR_4g125820 | 95.597 | 863 | 33 | 1 | 1 | 858 | 231 | 1093 | 0.0 | 1694 |
| MS.gene051834.t1 | MTR_4g125820 | 97.622 | 841 | 20 | 0 | 1 | 841 | 231 | 1071 | 0.0 | 1692 |
| MS.gene051834.t1 | MTR_2g040470 | 64.501 | 862 | 259 | 13 | 1 | 852 | 231 | 1055 | 0.0 | 1041 |
| MS.gene051834.t1 | MTR_2g040470 | 65.135 | 849 | 250 | 12 | 1 | 839 | 231 | 1043 | 0.0 | 1038 |
| MS.gene051834.t1 | MTR_2g040470 | 65.135 | 849 | 249 | 13 | 1 | 839 | 231 | 1042 | 0.0 | 1032 |
| MS.gene051834.t1 | MTR_4g053240 | 26.980 | 871 | 502 | 27 | 7 | 823 | 175 | 965 | 1.84e-57 | 214 |
| MS.gene051834.t1 | MTR_4g053240 | 27.086 | 875 | 509 | 28 | 7 | 823 | 175 | 978 | 2.51e-57 | 214 |
| MS.gene051834.t1 | MTR_4g053240 | 27.024 | 877 | 509 | 29 | 7 | 823 | 175 | 980 | 1.11e-56 | 212 |
| MS.gene051834.t1 | MTR_4g053240 | 27.024 | 877 | 509 | 29 | 7 | 823 | 227 | 1032 | 1.92e-56 | 212 |
| MS.gene051834.t1 | MTR_1g112190 | 27.043 | 673 | 354 | 20 | 183 | 808 | 331 | 913 | 5.39e-36 | 147 |
| MS.gene051834.t1 | MTR_1g112190 | 27.111 | 675 | 350 | 22 | 183 | 808 | 331 | 912 | 1.88e-35 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051834.t1 | AT2G19390 | 47.002 | 834 | 372 | 20 | 1 | 819 | 218 | 996 | 0.0 | 657 |
| MS.gene051834.t1 | AT2G19390 | 47.002 | 834 | 372 | 20 | 1 | 819 | 218 | 996 | 0.0 | 657 |
| MS.gene051834.t1 | AT4G29790 | 48.783 | 822 | 356 | 22 | 1 | 813 | 219 | 984 | 0.0 | 653 |
| MS.gene051834.t1 | AT5G22450 | 27.602 | 855 | 462 | 38 | 30 | 812 | 203 | 972 | 9.10e-41 | 162 |
| MS.gene051834.t1 | AT5G22450 | 27.602 | 855 | 462 | 38 | 30 | 812 | 203 | 972 | 9.10e-41 | 162 |
| MS.gene051834.t1 | AT5G22450 | 27.602 | 855 | 462 | 38 | 30 | 812 | 203 | 972 | 9.10e-41 | 162 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTGATATTCCTAATTT+TGG | 0.048782 | 8.2:+6873227 | MS.gene051834:CDS |
| TCCTCTTCTTGCACCATTTC+AGG | 0.145762 | 8.2:-6873578 | None:intergenic |
| TATTATCTTGGCCGTTTCTA+TGG | 0.153658 | 8.2:-6869932 | None:intergenic |
| ACTCTGAATTACACCATTAT+TGG | 0.167803 | 8.2:-6869236 | None:intergenic |
| AATAATGGTTATGGAATTAT+TGG | 0.182048 | 8.2:+6873179 | MS.gene051834:CDS |
| CTGCACTGGCATTTGTTAAA+TGG | 0.200481 | 8.2:+6874909 | MS.gene051834:CDS |
| CCTCAGCAAATTAGATTAAA+AGG | 0.206334 | 8.2:+6870653 | MS.gene051834:CDS |
| CTTGGATTCAACCCAAAATT+AGG | 0.210889 | 8.2:-6873239 | None:intergenic |
| ACATTGAATAAACCTGTTAA+TGG | 0.211820 | 8.2:+6869358 | MS.gene051834:CDS |
| GGTTCCATCTGCTTCCAAAA+TGG | 0.236319 | 8.2:-6871437 | None:intergenic |
| AGCTTTGGCAACTCAATAAA+TGG | 0.245736 | 8.2:+6873260 | MS.gene051834:CDS |
| AGAAACAAGCTTACTCTTTC+TGG | 0.249291 | 8.2:-6870816 | None:intergenic |
| AGTGCAGCAGCAGATTATTT+TGG | 0.260427 | 8.2:+6871161 | MS.gene051834:CDS |
| ACTCCTTCTCCAGCCCATTT+TGG | 0.263999 | 8.2:+6871423 | MS.gene051834:CDS |
| GCATTCCCTGTTTAGTTTCC+TGG | 0.270170 | 8.2:-6869384 | None:intergenic |
| GCTTTCAGATCTATCTCTTC+TGG | 0.271173 | 8.2:-6870758 | None:intergenic |
| AGAAAGAGTAAGCTTGTTTC+TGG | 0.278054 | 8.2:+6870818 | MS.gene051834:CDS |
| GAAACCATTGTTAATAGATA+TGG | 0.281103 | 8.2:+6872882 | MS.gene051834:CDS |
| AGATGGACACGGGGAGTTAT+TGG | 0.299136 | 8.2:+6871284 | MS.gene051834:CDS |
| TCTTCTCATTCTGCTAATAA+TGG | 0.307707 | 8.2:+6873164 | MS.gene051834:CDS |
| TCTTGCCTGTATCTTCAAAT+TGG | 0.314315 | 8.2:-6874949 | None:intergenic |
| CATTCTGCTAATAATGGTTA+TGG | 0.321303 | 8.2:+6873170 | MS.gene051834:CDS |
| CTTCCCAGCATAGCATTGTT+AGG | 0.322216 | 8.2:+6875017 | MS.gene051834:CDS |
| CTAAAATGAATACTGCTATT+CGG | 0.339196 | 8.2:+6870297 | MS.gene051834:CDS |
| GTGTTATCCACATTATTCAT+AGG | 0.345219 | 8.2:+6876518 | MS.gene051834:CDS |
| CTCTGCCAGGGGACAACGGG+CGG | 0.350986 | 8.2:-6870482 | None:intergenic |
| TATAGGCTGGGAGTTTCTAA+TGG | 0.357733 | 8.2:+6869843 | MS.gene051834:intron |
| ATCTCTCAGCAGACTGGGTT+GGG | 0.358629 | 8.2:+6869894 | MS.gene051834:CDS |
| GGTTTAGTTGGGTCAGTAGA+TGG | 0.361177 | 8.2:+6871267 | MS.gene051834:intron |
| TAAAATGAATACTGCTATTC+GGG | 0.363800 | 8.2:+6870298 | MS.gene051834:CDS |
| TGGTTTCCAGGAAACTAAAC+AGG | 0.366541 | 8.2:+6869378 | MS.gene051834:CDS |
| CGGGCTCCACGGTCAGGTTC+AGG | 0.366569 | 8.2:+6870317 | MS.gene051834:CDS |
| CTTGTTTCTGGTGAAGAACT+TGG | 0.370409 | 8.2:+6870830 | MS.gene051834:CDS |
| GTTCGGAGGCAAGGCAGGAC+GGG | 0.371161 | 8.2:+6870860 | MS.gene051834:CDS |
| CCGAGGAAGATATTACTTAC+TGG | 0.379351 | 8.2:+6871477 | MS.gene051834:CDS |
| CCAAGCTTCTCAGATGTCAT+TGG | 0.379521 | 8.2:-6870914 | None:intergenic |
| AGGAACAAATCCTTGAATAA+AGG | 0.379871 | 8.2:-6874986 | None:intergenic |
| GTTACCAAGTTAGACACCTT+TGG | 0.380300 | 8.2:-6870794 | None:intergenic |
| TAAACCTGTTAATGGTTTCC+AGG | 0.380515 | 8.2:+6869366 | MS.gene051834:CDS |
| GTTTCCTGGAAACCATTAAC+AGG | 0.382805 | 8.2:-6869370 | None:intergenic |
| AATTCTCTCGTCAGGCCATC+AGG | 0.386699 | 8.2:+6869178 | MS.gene051834:CDS |
| CTATTGGAGCTTCAAAGTAT+TGG | 0.387033 | 8.2:+6873365 | MS.gene051834:CDS |
| GATGTGGCTGGTAATGATAT+TGG | 0.387917 | 8.2:+6870596 | MS.gene051834:CDS |
| GAACAGCTGTTCCTAATGAT+TGG | 0.389264 | 8.2:+6870372 | MS.gene051834:CDS |
| TGAACAACCGGTGACATCTT+GGG | 0.395027 | 8.2:-6870347 | None:intergenic |
| TGAGAAAGCTCCCAATCATT+AGG | 0.397045 | 8.2:-6870383 | None:intergenic |
| TATAAATGATAAGCTTCTAT+TGG | 0.401761 | 8.2:+6873349 | MS.gene051834:CDS |
| GTTAATAGATATGGATTGAT+TGG | 0.401987 | 8.2:+6872891 | MS.gene051834:CDS |
| TTTCAGCGAGCCTTTATTCA+AGG | 0.402477 | 8.2:+6874976 | MS.gene051834:CDS |
| GGCCTCTGCCAGGGGACAAC+GGG | 0.402964 | 8.2:-6870485 | None:intergenic |
| GTTCCATCTGCTTCCAAAAT+GGG | 0.405262 | 8.2:-6871436 | None:intergenic |
| CCTAGTAATATCCTCCGATA+TGG | 0.406751 | 8.2:-6873606 | None:intergenic |
| ATGAACAACCGGTGACATCT+TGG | 0.407195 | 8.2:-6870348 | None:intergenic |
| TTTCTTCTTATAGCCTGAAA+TGG | 0.408158 | 8.2:+6873565 | MS.gene051834:intron |
| GATAATGAATCTGAGCTTGA+TGG | 0.412037 | 8.2:+6873089 | MS.gene051834:CDS |
| CTTCCCCGCCCGTTGTCCCC+TGG | 0.414712 | 8.2:+6870477 | MS.gene051834:CDS |
| TTTGGGTTGAATCCAAGCTT+TGG | 0.416009 | 8.2:+6873245 | MS.gene051834:CDS |
| ATATGCTTCTCCTCTGTCTC+TGG | 0.416454 | 8.2:+6875075 | MS.gene051834:CDS |
| ACCTATTGTAGGTGATGGTT+GGG | 0.417451 | 8.2:+6869273 | MS.gene051834:CDS |
| AAGCTACGGATTGCCAATAA+TGG | 0.417615 | 8.2:+6869223 | MS.gene051834:CDS |
| ATTTCCTAACAATGCTATGC+TGG | 0.420888 | 8.2:-6875021 | None:intergenic |
| CTTGGCCGTTTCTATGGGTA+GGG | 0.421449 | 8.2:-6869926 | None:intergenic |
| ATAATGGTTATGGAATTATT+GGG | 0.423024 | 8.2:+6873180 | MS.gene051834:CDS |
| TGACAAGGGAATTATTATCT+TGG | 0.424434 | 8.2:-6869944 | None:intergenic |
| GGTTTATTCAATGTAGTACT+TGG | 0.424721 | 8.2:-6869349 | None:intergenic |
| AACGACTTGCTACTGATTCT+CGG | 0.429342 | 8.2:+6869410 | MS.gene051834:CDS |
| AAATTCAAGCAATAACAAAA+TGG | 0.433171 | 8.2:+6874877 | MS.gene051834:CDS |
| TGAGGTTAAACCAAAAGAAA+AGG | 0.435183 | 8.2:+6870727 | MS.gene051834:CDS |
| TGCCTGTATCTTCAAATTGG+TGG | 0.435626 | 8.2:-6874946 | None:intergenic |
| TTTATTGAGTTGCCAAAGCT+TGG | 0.436808 | 8.2:-6873257 | None:intergenic |
| ATTGTATTGCAACTCTGAAC+AGG | 0.438724 | 8.2:-6873318 | None:intergenic |
| GCTATTCGGGCTCCACGGTC+AGG | 0.441787 | 8.2:+6870311 | MS.gene051834:CDS |
| TTATCTGAAAGTGAAGAGTC+TGG | 0.443993 | 8.2:+6870698 | MS.gene051834:CDS |
| CCGGTTCCTTCAAACATAGA+TGG | 0.446868 | 8.2:+6872855 | MS.gene051834:CDS |
| AGGCACAAAACTTGTTCTTC+TGG | 0.452853 | 8.2:-6870528 | None:intergenic |
| TCTGCCAGGGGACAACGGGC+GGG | 0.454327 | 8.2:-6870481 | None:intergenic |
| GTGAAGGGTGTTATCAAATC+TGG | 0.454632 | 8.2:+6871312 | MS.gene051834:CDS |
| CTGTTAGTTCAGACAAGGAT+AGG | 0.454762 | 8.2:+6869985 | MS.gene051834:CDS |
| GGAGTTATTGGCTGCTGTGA+AGG | 0.454792 | 8.2:+6871296 | MS.gene051834:CDS |
| TTATGGAATTATTGGGAAAC+CGG | 0.455569 | 8.2:+6873187 | MS.gene051834:CDS |
| CCATCTATGTTTGAAGGAAC+CGG | 0.457111 | 8.2:-6872855 | None:intergenic |
| ATGTGGCTGGTAATGATATT+GGG | 0.458028 | 8.2:+6870597 | MS.gene051834:CDS |
| TGTTAGGAAATCAGATGGAT+TGG | 0.459381 | 8.2:+6875033 | MS.gene051834:CDS |
| TACCTATTGTAGGTGATGGT+TGG | 0.460317 | 8.2:+6869272 | MS.gene051834:CDS |
| TCGGAGGATATTACTAGGTT+AGG | 0.460701 | 8.2:+6873611 | MS.gene051834:CDS |
| CTGCCAGGGGACAACGGGCG+GGG | 0.460809 | 8.2:-6870480 | None:intergenic |
| TACCATGTTATGATCTCCCT+TGG | 0.463961 | 8.2:-6872982 | None:intergenic |
| ATGGTGTTCGGAGGCAAGGC+AGG | 0.465540 | 8.2:+6870855 | MS.gene051834:CDS |
| CGATCAGAAAGCTTCCTTGT+TGG | 0.466660 | 8.2:-6871104 | None:intergenic |
| CGCCCGTTGTCCCCTGGCAG+AGG | 0.467706 | 8.2:+6870483 | MS.gene051834:CDS |
| TGTTCCAAAGGTGTCTAACT+TGG | 0.468790 | 8.2:+6870790 | MS.gene051834:CDS |
| GCTGGTAATGATATTGGGTT+AGG | 0.471374 | 8.2:+6870602 | MS.gene051834:CDS |
| AACAGCTGTTCCTAATGATT+GGG | 0.472608 | 8.2:+6870373 | MS.gene051834:CDS |
| TTGCTGCAGTTGCTTCATCA+TGG | 0.473376 | 8.2:+6876496 | MS.gene051834:CDS |
| CTGTCTCTGGAAGCAACACC+AGG | 0.473593 | 8.2:+6875088 | MS.gene051834:CDS |
| TACGCACCAATTCTCTCGTC+AGG | 0.474209 | 8.2:+6869170 | MS.gene051834:CDS |
| TTCCCTTGTCAACGATAAGC+GGG | 0.474934 | 8.2:+6869956 | MS.gene051834:CDS |
| GATGGAATCTCTCAGCAGAC+TGG | 0.475087 | 8.2:+6869888 | MS.gene051834:CDS |
| CCATATCGGAGGATATTACT+AGG | 0.476716 | 8.2:+6873606 | MS.gene051834:CDS |
| AATGGTCAAGCAAGCTGCAC+TGG | 0.477784 | 8.2:+6874895 | MS.gene051834:CDS |
| GTAAGCTTACCACTGATTCA+AGG | 0.479044 | 8.2:-6873394 | None:intergenic |
| GCATCAATTGTACCTGTCCT+TGG | 0.479173 | 8.2:-6873643 | None:intergenic |
| TCAGAAAGCTTCCTTGTTGG+TGG | 0.479190 | 8.2:-6871101 | None:intergenic |
| TTAGTACTATTAACACCAGC+TGG | 0.479647 | 8.2:-6870422 | None:intergenic |
| TACCACCAATTTGAAGATAC+AGG | 0.482843 | 8.2:+6874944 | MS.gene051834:CDS |
| TGATGGCCTGACGAGAGAAT+TGG | 0.482919 | 8.2:-6869176 | None:intergenic |
| AGAGTTGCAATACAATAGCT+TGG | 0.485205 | 8.2:+6873325 | MS.gene051834:CDS |
| GAGTTGCAATACAATAGCTT+GGG | 0.485947 | 8.2:+6873326 | MS.gene051834:CDS |
| GAGCGAAACTTACCTATTGT+AGG | 0.486176 | 8.2:+6869262 | MS.gene051834:CDS |
| AAGAACTTGGAGATGGTGTT+CGG | 0.487321 | 8.2:+6870843 | MS.gene051834:CDS |
| AGAGACAGAGGAGAAGCATA+TGG | 0.488395 | 8.2:-6875073 | None:intergenic |
| AGAAGAGGATGAAGCCATAT+CGG | 0.489438 | 8.2:+6873592 | MS.gene051834:CDS |
| TCGGTTATCAAACTGAAGAA+AGG | 0.490916 | 8.2:-6871458 | None:intergenic |
| GAACAACCGGTGACATCTTG+GGG | 0.495883 | 8.2:-6870346 | None:intergenic |
| TGGCCTCTGCCAGGGGACAA+CGG | 0.499000 | 8.2:-6870486 | None:intergenic |
| GGCATTTGTTAAATGGACAT+TGG | 0.499248 | 8.2:+6874916 | MS.gene051834:CDS |
| TATGCTGGGAAGAAGCAGTT+AGG | 0.500503 | 8.2:-6875006 | None:intergenic |
| TGAAGAGTCTGGGGTGGCTG+AGG | 0.500599 | 8.2:+6870709 | MS.gene051834:CDS |
| TCCCAACCATCACCTACAAT+AGG | 0.505403 | 8.2:-6869274 | None:intergenic |
| CATCTGCTTCCAAAATGGGC+TGG | 0.505424 | 8.2:-6871432 | None:intergenic |
| ACTGAAAATTAGATAGTGAA+TGG | 0.507055 | 8.2:-6873139 | None:intergenic |
| ACAGCTGTTCTATGAACAAC+CGG | 0.508478 | 8.2:-6870359 | None:intergenic |
| ATGTTTGAAGGAACCGGAGT+TGG | 0.510195 | 8.2:-6872849 | None:intergenic |
| TCACAACCATCTATGTTTGA+AGG | 0.514741 | 8.2:-6872861 | None:intergenic |
| AACTTACCTATTGTAGGTGA+TGG | 0.516763 | 8.2:+6869268 | MS.gene051834:CDS |
| TCTTGGCCGTTTCTATGGGT+AGG | 0.518049 | 8.2:-6869927 | None:intergenic |
| TTCGGAGGCAAGGCAGGACG+GGG | 0.518811 | 8.2:+6870861 | MS.gene051834:CDS |
| GAGTTATTGGCTGCTGTGAA+GGG | 0.519777 | 8.2:+6871297 | MS.gene051834:CDS |
| ATAATCTGCTGCTGCACTGA+TGG | 0.522575 | 8.2:-6871156 | None:intergenic |
| AAGCACTCTGACTCCAACTC+CGG | 0.524066 | 8.2:+6872836 | MS.gene051834:CDS |
| CTTCCAAAATGGGCTGGAGA+AGG | 0.528410 | 8.2:-6871426 | None:intergenic |
| GGATTCGTGAGACGCTCAGC+TGG | 0.528645 | 8.2:+6870623 | MS.gene051834:CDS |
| TTAAACCAAAAGAAAAGGGC+AGG | 0.529000 | 8.2:+6870732 | MS.gene051834:CDS |
| GAGGTTAAACCAAAAGAAAA+GGG | 0.529191 | 8.2:+6870728 | MS.gene051834:CDS |
| TCATCATTACTCGAAACAAC+AGG | 0.530335 | 8.2:-6870548 | None:intergenic |
| ATTATCTTGGCCGTTTCTAT+GGG | 0.530350 | 8.2:-6869931 | None:intergenic |
| AATCTCTCAGCAGACTGGGT+TGG | 0.535573 | 8.2:+6869893 | MS.gene051834:CDS |
| AAGGAAGCTTTCTGATCGTA+AGG | 0.535690 | 8.2:+6871109 | MS.gene051834:CDS |
| TCTCAATGCCACAAGGTCAC+TGG | 0.536594 | 8.2:+6870889 | MS.gene051834:CDS |
| TAGGAAATCAGATGGATTGG+AGG | 0.537127 | 8.2:+6875036 | MS.gene051834:CDS |
| TGTTCGGAGGCAAGGCAGGA+CGG | 0.537630 | 8.2:+6870859 | MS.gene051834:CDS |
| TTTCCAACCTATGAATAATG+TGG | 0.539717 | 8.2:-6876525 | None:intergenic |
| TATCTGAAAGTGAAGAGTCT+GGG | 0.542796 | 8.2:+6870699 | MS.gene051834:CDS |
| TAAAGCATTAATGTCTAGCT+TGG | 0.543499 | 8.2:+6873295 | MS.gene051834:CDS |
| GATGGAGAATTAGAATTGAG+TGG | 0.544477 | 8.2:+6873107 | MS.gene051834:CDS |
| CCAGTAAGTAATATCTTCCT+CGG | 0.545955 | 8.2:-6871477 | None:intergenic |
| TTATGATCTCCCTTGGGCAG+TGG | 0.546847 | 8.2:-6872975 | None:intergenic |
| CACATCAGAAACAGCATCCA+CGG | 0.547761 | 8.2:-6870579 | None:intergenic |
| GAAGAGATAGATCTGAAAGC+TGG | 0.548176 | 8.2:+6870761 | MS.gene051834:CDS |
| GGAGATGGTGTTCGGAGGCA+AGG | 0.549572 | 8.2:+6870851 | MS.gene051834:CDS |
| AAGGATGTGATAAGAATGAA+AGG | 0.559534 | 8.2:+6870975 | MS.gene051834:CDS |
| ATATCACTTTCATCATGTGC+CGG | 0.560029 | 8.2:-6873206 | None:intergenic |
| TTTCCTAACAATGCTATGCT+GGG | 0.562049 | 8.2:-6875020 | None:intergenic |
| GCTGCTGCACTGATGGCAGT+AGG | 0.562066 | 8.2:-6871149 | None:intergenic |
| CGTACCCCTACCCATAGAAA+CGG | 0.564946 | 8.2:+6869921 | MS.gene051834:CDS |
| GATGCTGTTTCTGATGTGGC+TGG | 0.565211 | 8.2:+6870584 | MS.gene051834:CDS |
| AGCATTGTTAGGAAATCAGA+TGG | 0.566367 | 8.2:+6875028 | MS.gene051834:CDS |
| AGGCGAGCTTTACCAAGGAC+AGG | 0.572551 | 8.2:+6873631 | MS.gene051834:CDS |
| TCAGAAACAGCATCCACGGC+AGG | 0.573599 | 8.2:-6870575 | None:intergenic |
| ACCATGTTATGATCTCCCTT+GGG | 0.576619 | 8.2:-6872981 | None:intergenic |
| TAGTACTATTAACACCAGCT+GGG | 0.577011 | 8.2:-6870421 | None:intergenic |
| CCAATGACATCTGAGAAGCT+TGG | 0.577012 | 8.2:+6870914 | MS.gene051834:CDS |
| ATGGAATCTCTCAGCAGACT+GGG | 0.577276 | 8.2:+6869889 | MS.gene051834:CDS |
| TGTTAGTTCAGACAAGGATA+GGG | 0.577411 | 8.2:+6869986 | MS.gene051834:CDS |
| CATAAGCTGTCACAACAAGT+TGG | 0.581811 | 8.2:-6874052 | None:intergenic |
| AGCTGGACAAAATGTTCCAA+AGG | 0.582515 | 8.2:+6870778 | MS.gene051834:CDS |
| ATTCTCTCGTCAGGCCATCA+GGG | 0.584314 | 8.2:+6869179 | MS.gene051834:CDS |
| TGGACTTGACCTTGAATCAG+TGG | 0.585412 | 8.2:+6873385 | MS.gene051834:CDS |
| AGAAAAGTTACCACTGCCCA+AGG | 0.585947 | 8.2:+6872965 | MS.gene051834:CDS |
| CGTGGATGCTGTTTCTGATG+TGG | 0.587597 | 8.2:+6870580 | MS.gene051834:CDS |
| TTGGCCGTTTCTATGGGTAG+GGG | 0.592568 | 8.2:-6869925 | None:intergenic |
| TCTCTATCAACAGTCCCTGA+TGG | 0.593157 | 8.2:-6869193 | None:intergenic |
| ATAGAGATAAAGAAAAGCTA+CGG | 0.593295 | 8.2:+6869209 | MS.gene051834:CDS |
| TGGAATCCTTGCAGCAAGGT+CGG | 0.595199 | 8.2:+6871074 | MS.gene051834:intron |
| GCCTGAAATGGTGCAAGAAG+AGG | 0.597062 | 8.2:+6873577 | MS.gene051834:intron |
| CAATCCATATCTATTAACAA+TGG | 0.597593 | 8.2:-6872886 | None:intergenic |
| CATTGGTGCCAGTGACCTTG+TGG | 0.600420 | 8.2:-6870897 | None:intergenic |
| AAATGGGCTGGAGAAGGAGT+AGG | 0.600944 | 8.2:-6871420 | None:intergenic |
| GATAAAGCTGACGAAGGTGA+AGG | 0.607931 | 8.2:-6870680 | None:intergenic |
| TTGGGTCAGTAGATGGACAC+GGG | 0.609726 | 8.2:+6871274 | MS.gene051834:CDS |
| GTTGCAGCTAGCAAATCAGA+TGG | 0.614494 | 8.2:+6869870 | MS.gene051834:CDS |
| ATTCCCTTGTCAACGATAAG+CGG | 0.615124 | 8.2:+6869955 | MS.gene051834:CDS |
| AGTACTATTAACACCAGCTG+GGG | 0.615616 | 8.2:-6870420 | None:intergenic |
| GCTATAAGTCGTTGACAGAG+AGG | 0.616818 | 8.2:-6873005 | None:intergenic |
| TCAGAAGAAGATCGTAGCGG+TGG | 0.617335 | 8.2:+6873038 | MS.gene051834:CDS |
| GCTTGTCGAGGTGCATCGAG+TGG | 0.617837 | 8.2:+6874851 | MS.gene051834:CDS |
| ATTAATTGACAGGCTTGTCG+AGG | 0.619306 | 8.2:+6874839 | MS.gene051834:intron |
| ATCTGAAAGTGAAGAGTCTG+GGG | 0.621108 | 8.2:+6870700 | MS.gene051834:CDS |
| CAACTAAGAAGTGCAAGACA+AGG | 0.626347 | 8.2:+6870956 | MS.gene051834:CDS |
| TTGGCTGTGAAAGAGATGTC+AGG | 0.626925 | 8.2:+6872910 | MS.gene051834:CDS |
| TACTAACAATCGCAAACGTG+TGG | 0.628851 | 8.2:+6870439 | MS.gene051834:CDS |
| GCAACTCCTGAACCTGACCG+TGG | 0.628986 | 8.2:-6870323 | None:intergenic |
| GGCGCAGTCTCAATGCCACA+AGG | 0.632240 | 8.2:+6870882 | MS.gene051834:CDS |
| TCTGGTGAAGAACTTGGAGA+TGG | 0.633085 | 8.2:+6870836 | MS.gene051834:CDS |
| AGGTCGGTCGTCCACCAACA+AGG | 0.634464 | 8.2:+6871090 | MS.gene051834:CDS |
| ACTTGCACCACATCACATTG+AGG | 0.637836 | 8.2:-6876470 | None:intergenic |
| GACCCCGCTTATCGTTGACA+AGG | 0.638938 | 8.2:-6869959 | None:intergenic |
| ATACTGCTATTCGGGCTCCA+CGG | 0.639890 | 8.2:+6870306 | MS.gene051834:CDS |
| AACTTGGAGATGGTGTTCGG+AGG | 0.639929 | 8.2:+6870846 | MS.gene051834:CDS |
| GTTGGGTCAGTAGATGGACA+CGG | 0.640060 | 8.2:+6871273 | MS.gene051834:intron |
| AGAGGATGAAGCCATATCGG+AGG | 0.640561 | 8.2:+6873595 | MS.gene051834:CDS |
| TAATGATGAAGCTCCTGCCG+TGG | 0.642986 | 8.2:+6870562 | MS.gene051834:CDS |
| TCGTTCTGTTAGTTCAGACA+AGG | 0.647341 | 8.2:+6869980 | MS.gene051834:CDS |
| CTTTCAGATAAAGCTGACGA+AGG | 0.654396 | 8.2:-6870686 | None:intergenic |
| TTTCTTCAGTTTGATAACCG+AGG | 0.657033 | 8.2:+6871460 | MS.gene051834:CDS |
| TCAATGTGATGTGGTGCAAG+TGG | 0.657648 | 8.2:+6876472 | MS.gene051834:CDS |
| AACAACCGGTGACATCTTGG+GGG | 0.661134 | 8.2:-6870345 | None:intergenic |
| TATTACTTACTGGAAGCAGA+AGG | 0.666092 | 8.2:+6871487 | MS.gene051834:CDS |
| AGGTTAGGCGAGCTTTACCA+AGG | 0.670077 | 8.2:+6873626 | MS.gene051834:CDS |
| GGTGTTGCTTCCAGAGACAG+AGG | 0.671711 | 8.2:-6875085 | None:intergenic |
| GAAAAGTTACCACTGCCCAA+GGG | 0.674314 | 8.2:+6872966 | MS.gene051834:CDS |
| TGAAAGTGAAGAGTCTGGGG+TGG | 0.689292 | 8.2:+6870703 | MS.gene051834:CDS |
| TCCCTTGTCAACGATAAGCG+GGG | 0.697454 | 8.2:+6869957 | MS.gene051834:CDS |
| ACCCCGCTTATCGTTGACAA+GGG | 0.697989 | 8.2:-6869958 | None:intergenic |
| GTACTATTAACACCAGCTGG+GGG | 0.704073 | 8.2:-6870419 | None:intergenic |
| GGTTTCCAGGAAACTAAACA+GGG | 0.704253 | 8.2:+6869379 | MS.gene051834:CDS |
| ATACATACCTCAATGTGATG+TGG | 0.712735 | 8.2:+6876463 | MS.gene051834:CDS |
| GCCCAAGGGAGATCATAACA+TGG | 0.735920 | 8.2:+6872980 | MS.gene051834:CDS |
| TGGGTCAGTAGATGGACACG+GGG | 0.750888 | 8.2:+6871275 | MS.gene051834:CDS |
| GACAGCTTATGAGAAATACA+CGG | 0.751119 | 8.2:+6874064 | MS.gene051834:CDS |
| ATATCAGAAGAAGATCGTAG+CGG | 0.769117 | 8.2:+6873035 | MS.gene051834:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6869163 | 6876539 | 6869163 | ID=MS.gene051834 |
| chr8.2 | mRNA | 6869163 | 6876539 | 6869163 | ID=MS.gene051834.t1;Parent=MS.gene051834 |
| chr8.2 | exon | 6869163 | 6869464 | 6869163 | ID=MS.gene051834.t1.exon1;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6869163 | 6869464 | 6869163 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6869848 | 6870030 | 6869848 | ID=MS.gene051834.t1.exon2;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6869848 | 6870030 | 6869848 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6870250 | 6870996 | 6870250 | ID=MS.gene051834.t1.exon3;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6870250 | 6870996 | 6870250 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6871088 | 6871182 | 6871088 | ID=MS.gene051834.t1.exon4;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6871088 | 6871182 | 6871088 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6871274 | 6871333 | 6871274 | ID=MS.gene051834.t1.exon5;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6871274 | 6871333 | 6871274 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6871420 | 6871508 | 6871420 | ID=MS.gene051834.t1.exon6;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6871420 | 6871508 | 6871420 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6872822 | 6873406 | 6872822 | ID=MS.gene051834.t1.exon7;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6872822 | 6873406 | 6872822 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6873578 | 6873652 | 6873578 | ID=MS.gene051834.t1.exon8;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6873578 | 6873652 | 6873578 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6873868 | 6873938 | 6873868 | ID=MS.gene051834.t1.exon9;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6873868 | 6873938 | 6873868 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6874028 | 6874085 | 6874028 | ID=MS.gene051834.t1.exon10;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6874028 | 6874085 | 6874028 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6874851 | 6875109 | 6874851 | ID=MS.gene051834.t1.exon11;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6874851 | 6875109 | 6874851 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| chr8.2 | exon | 6876463 | 6876539 | 6876463 | ID=MS.gene051834.t1.exon12;Parent=MS.gene051834.t1 |
| chr8.2 | CDS | 6876463 | 6876539 | 6876463 | ID=cds.MS.gene051834.t1;Parent=MS.gene051834.t1 |
| Gene Sequence |
| Protein sequence |
