Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24854.t1 | XP_013458451.1 | 97.9 | 1142 | 23 | 1 | 1 | 1141 | 1 | 1142 | 0.00E+00 | 2155.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24854.t1 | A0A072US36 | 97.9 | 1142 | 23 | 1 | 1 | 1141 | 1 | 1142 | 0.0e+00 | 2155.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051209 | MS.gene24854 | 0.815623 | 8.41E-52 | -1.69E-46 |
| MS.gene051834 | MS.gene24854 | 0.890991 | 5.97E-74 | -1.69E-46 |
| MS.gene051835 | MS.gene24854 | 0.902946 | 5.76E-79 | -1.69E-46 |
| MS.gene052161 | MS.gene24854 | 0.800477 | 1.42E-48 | -1.69E-46 |
| MS.gene052776 | MS.gene24854 | 0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene053486 | MS.gene24854 | 0.830124 | 3.50E-55 | -1.69E-46 |
| MS.gene056519 | MS.gene24854 | 0.800217 | 1.60E-48 | -1.69E-46 |
| MS.gene060351 | MS.gene24854 | 0.817315 | 3.52E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24854.t1 | MTR_4g125820 | 97.898 | 1142 | 23 | 1 | 1 | 1141 | 1 | 1142 | 0.0 | 2289 |
| MS.gene24854.t1 | MTR_4g125820 | 97.763 | 1073 | 23 | 1 | 1 | 1072 | 1 | 1073 | 0.0 | 2149 |
| MS.gene24854.t1 | MTR_2g040470 | 65.674 | 1142 | 345 | 13 | 1 | 1131 | 1 | 1106 | 0.0 | 1421 |
| MS.gene24854.t1 | MTR_2g040470 | 65.674 | 1142 | 344 | 14 | 1 | 1131 | 1 | 1105 | 0.0 | 1415 |
| MS.gene24854.t1 | MTR_2g040470 | 66.080 | 1079 | 318 | 14 | 1 | 1068 | 1 | 1042 | 0.0 | 1346 |
| MS.gene24854.t1 | MTR_4g053240 | 26.595 | 1113 | 663 | 32 | 75 | 1128 | 25 | 1042 | 3.30e-69 | 254 |
| MS.gene24854.t1 | MTR_4g053240 | 26.679 | 1117 | 670 | 33 | 75 | 1128 | 25 | 1055 | 5.27e-69 | 253 |
| MS.gene24854.t1 | MTR_4g053240 | 26.631 | 1119 | 670 | 34 | 75 | 1128 | 77 | 1109 | 3.13e-68 | 251 |
| MS.gene24854.t1 | MTR_4g053240 | 26.631 | 1119 | 670 | 34 | 75 | 1128 | 25 | 1057 | 3.23e-68 | 251 |
| MS.gene24854.t1 | MTR_4g123547 | 60.510 | 157 | 26 | 2 | 1 | 157 | 1 | 121 | 4.18e-40 | 144 |
| MS.gene24854.t1 | MTR_1g112190 | 26.711 | 745 | 381 | 24 | 449 | 1141 | 367 | 998 | 4.57e-37 | 152 |
| MS.gene24854.t1 | MTR_1g112190 | 26.774 | 747 | 377 | 26 | 449 | 1141 | 367 | 997 | 1.32e-36 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24854.t1 | AT2G19390 | 49.180 | 1159 | 485 | 31 | 1 | 1139 | 1 | 1075 | 0.0 | 939 |
| MS.gene24854.t1 | AT2G19390 | 49.180 | 1159 | 485 | 31 | 1 | 1139 | 1 | 1075 | 0.0 | 939 |
| MS.gene24854.t1 | AT4G29790 | 49.307 | 1154 | 479 | 30 | 1 | 1139 | 1 | 1063 | 0.0 | 928 |
| MS.gene24854.t1 | AT5G22450 | 27.228 | 1021 | 570 | 41 | 98 | 1041 | 48 | 972 | 2.49e-51 | 198 |
| MS.gene24854.t1 | AT5G22450 | 27.228 | 1021 | 570 | 41 | 98 | 1041 | 48 | 972 | 2.49e-51 | 198 |
| MS.gene24854.t1 | AT5G22450 | 27.228 | 1021 | 570 | 41 | 98 | 1041 | 48 | 972 | 2.49e-51 | 198 |
Find 298 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTGATATTCCTAATTT+TGG | 0.048782 | 8.1:+6269350 | MS.gene24854:CDS |
| ATCACCAATTTCTCAGAATT+TGG | 0.102188 | 8.1:+6271437 | MS.gene24854:CDS |
| TCCTCTTCTTGCACCATTTC+AGG | 0.145762 | 8.1:-6269700 | None:intergenic |
| TATTATCTTGGCCGTTTCTA+TGG | 0.153658 | 8.1:-6266054 | None:intergenic |
| GATCTCTTCTTCACATTTAC+AGG | 0.154540 | 8.1:-6264433 | None:intergenic |
| ACTCTGAATTACACCATTAT+TGG | 0.167803 | 8.1:-6265358 | None:intergenic |
| AATAATGGTTATGGAATTAT+TGG | 0.182048 | 8.1:+6269302 | MS.gene24854:CDS |
| CTGCACTGGCATTTGTTAAA+TGG | 0.200481 | 8.1:+6271031 | MS.gene24854:CDS |
| CCTCAGCAAATTAGATTAAA+AGG | 0.206334 | 8.1:+6266775 | MS.gene24854:CDS |
| CTTGGATTCAACCCAAAATT+AGG | 0.210889 | 8.1:-6269362 | None:intergenic |
| ACATTGAATAAACCTGTTAA+TGG | 0.211820 | 8.1:+6265480 | MS.gene24854:CDS |
| GGTTCCATCTGCTTCCAAAA+TGG | 0.236319 | 8.1:-6267560 | None:intergenic |
| AGCTTTGGCAACTCAATAAA+TGG | 0.245736 | 8.1:+6269383 | MS.gene24854:CDS |
| AGAAACAAGCTTACTCTTTC+TGG | 0.249291 | 8.1:-6266938 | None:intergenic |
| TTATCCAAATTCTGAGAAAT+TGG | 0.253548 | 8.1:-6271441 | None:intergenic |
| CCAGTGGAAATGAAGATTTC+TGG | 0.257550 | 8.1:+6271520 | MS.gene24854:CDS |
| AGTGCAGCAGCAGATTATTT+TGG | 0.260427 | 8.1:+6267284 | MS.gene24854:CDS |
| ACTCCTTCTCCAGCCCATTT+TGG | 0.263999 | 8.1:+6267546 | MS.gene24854:CDS |
| CTTGTTTGGGCCAAGACTTT+TGG | 0.269831 | 8.1:-6264599 | None:intergenic |
| GCATTCCCTGTTTAGTTTCC+TGG | 0.270170 | 8.1:-6265506 | None:intergenic |
| GCTTTCAGATCTATCTCTTC+TGG | 0.271173 | 8.1:-6266880 | None:intergenic |
| AGAAAGAGTAAGCTTGTTTC+TGG | 0.278054 | 8.1:+6266940 | MS.gene24854:CDS |
| GAAACCATTGTTAATAGATA+TGG | 0.281103 | 8.1:+6269005 | MS.gene24854:CDS |
| GAAGTTCGAGGGCGCTTGTT+TGG | 0.282062 | 8.1:-6264613 | None:intergenic |
| CATTCTGCTAATAATGGTTA+TGG | 0.297535 | 8.1:+6269293 | MS.gene24854:CDS |
| AGATGGACACGGGGAGTTAT+TGG | 0.299136 | 8.1:+6267407 | MS.gene24854:CDS |
| CTCATACGCTTGACGTCTTC+TGG | 0.300310 | 8.1:-6264237 | None:intergenic |
| CGCTTGACGTCTTCTGGTAC+TGG | 0.311609 | 8.1:-6264231 | None:intergenic |
| TCTTGCCTGTATCTTCAAAT+TGG | 0.314315 | 8.1:-6271071 | None:intergenic |
| CTTCCCAGCATAGCATTGTT+AGG | 0.322216 | 8.1:+6271139 | MS.gene24854:CDS |
| TCTTCGCATTCTGCTAATAA+TGG | 0.330315 | 8.1:+6269287 | MS.gene24854:CDS |
| CTAAAATGAATACTGCTATT+CGG | 0.339196 | 8.1:+6266419 | MS.gene24854:CDS |
| ATGAAGATTTCTGGTCAAAC+AGG | 0.340365 | 8.1:+6271529 | MS.gene24854:CDS |
| AAGTTCGAGGGCGCTTGTTT+GGG | 0.348775 | 8.1:-6264612 | None:intergenic |
| TTAAATGACCGCTCAGTCTT+GGG | 0.349182 | 8.1:+6264496 | MS.gene24854:CDS |
| CCACATGACGATTAGACTTA+TGG | 0.352469 | 8.1:-6264122 | None:intergenic |
| CAAGCGCCCTCGAACTTCTA+TGG | 0.353280 | 8.1:+6264618 | MS.gene24854:CDS |
| TATAGGCTGGGAGTTTCTAA+TGG | 0.357733 | 8.1:+6265965 | MS.gene24854:intron |
| ATCTCTCAGCAGACTGGGTT+GGG | 0.358629 | 8.1:+6266016 | MS.gene24854:CDS |
| GGTTTAGTTGGGTCAGTAGA+TGG | 0.361177 | 8.1:+6267390 | MS.gene24854:intron |
| TAAAATGAATACTGCTATTC+GGG | 0.363800 | 8.1:+6266420 | MS.gene24854:CDS |
| TGGTTTCCAGGAAACTAAAC+AGG | 0.366541 | 8.1:+6265500 | MS.gene24854:CDS |
| CGGGCTCCACGGTCAGGTTC+AGG | 0.366569 | 8.1:+6266439 | MS.gene24854:CDS |
| CTTGTTTCTGGTGAAGAACT+TGG | 0.370409 | 8.1:+6266952 | MS.gene24854:CDS |
| GTTCGGAGGCAAGGCAGGAC+GGG | 0.371161 | 8.1:+6266982 | MS.gene24854:CDS |
| CCGAGGAAGATATTACTTAC+TGG | 0.379351 | 8.1:+6267600 | MS.gene24854:CDS |
| CCAAGCTTCTCAGATGTCAT+TGG | 0.379521 | 8.1:-6267036 | None:intergenic |
| AGGAACAAATCCTTGAATAA+AGG | 0.379871 | 8.1:-6271108 | None:intergenic |
| GTTACCAAGTTAGACACCTT+TGG | 0.380300 | 8.1:-6266916 | None:intergenic |
| TAAACCTGTTAATGGTTTCC+AGG | 0.380515 | 8.1:+6265488 | MS.gene24854:CDS |
| GTTTCCTGGAAACCATTAAC+AGG | 0.382805 | 8.1:-6265492 | None:intergenic |
| TCTGCCAGGGGACAACGGTC+GGG | 0.386527 | 8.1:-6266603 | None:intergenic |
| AATTCTCTCGTCAGGCCATC+AGG | 0.386699 | 8.1:+6265300 | MS.gene24854:CDS |
| CTATTGGAGCTTCAAAGTAT+TGG | 0.387033 | 8.1:+6269488 | MS.gene24854:CDS |
| GATGTGGCTGGTAATGATAT+TGG | 0.387917 | 8.1:+6266718 | MS.gene24854:CDS |
| GAACAGCTGTTCCTAATGAT+TGG | 0.389264 | 8.1:+6266494 | MS.gene24854:CDS |
| CATTACACTAGAACGATCAT+TGG | 0.389335 | 8.1:-6264473 | None:intergenic |
| TGAACAACCGGTGACATCTT+GGG | 0.395027 | 8.1:-6266469 | None:intergenic |
| TGAGAAAGCTCCCAATCATT+AGG | 0.397045 | 8.1:-6266505 | None:intergenic |
| TATAAATGATAAGCTTCTAT+TGG | 0.401761 | 8.1:+6269472 | MS.gene24854:CDS |
| GTTAATAGATATGGATTGAT+TGG | 0.401987 | 8.1:+6269014 | MS.gene24854:CDS |
| TTTCAGCGAGCCTTTATTCA+AGG | 0.402477 | 8.1:+6271098 | MS.gene24854:CDS |
| GTTCCATCTGCTTCCAAAAT+GGG | 0.405262 | 8.1:-6267559 | None:intergenic |
| AATTGTTCCTTGATGATGTC+GGG | 0.405983 | 8.1:+6271565 | MS.gene24854:CDS |
| CCTAGTAATATCCTCCGATA+TGG | 0.406751 | 8.1:-6269728 | None:intergenic |
| CGACATGTTAATGCTGCTCT+TGG | 0.406955 | 8.1:+6264153 | MS.gene24854:CDS |
| ATGAACAACCGGTGACATCT+TGG | 0.407195 | 8.1:-6266470 | None:intergenic |
| TTTCTTCTTATAGCCTGAAA+TGG | 0.408158 | 8.1:+6269687 | MS.gene24854:intron |
| GTTAAATGACCGCTCAGTCT+TGG | 0.410180 | 8.1:+6264495 | MS.gene24854:CDS |
| AGCGGTAAGGTTGGCGTTCA+AGG | 0.411346 | 8.1:+6264523 | MS.gene24854:CDS |
| GATAATGAATCTGAGCTTGA+TGG | 0.412037 | 8.1:+6269212 | MS.gene24854:CDS |
| TTTGGGTTGAATCCAAGCTT+TGG | 0.416009 | 8.1:+6269368 | MS.gene24854:CDS |
| ATATGCTTCTCCTCTGTCTC+TGG | 0.416454 | 8.1:+6271197 | MS.gene24854:CDS |
| TTGGGCAGAGAAGACAGAAT+TGG | 0.416990 | 8.1:-6264009 | None:intergenic |
| ACCTATTGTAGGTGATGGTT+GGG | 0.417451 | 8.1:+6265395 | MS.gene24854:CDS |
| AAGCTACGGATTGCCAATAA+TGG | 0.417615 | 8.1:+6265345 | MS.gene24854:CDS |
| ATTTCCTAACAATGCTATGC+TGG | 0.420888 | 8.1:-6271143 | None:intergenic |
| CTTGGCCGTTTCTATGGGTA+GGG | 0.421449 | 8.1:-6266048 | None:intergenic |
| CAGAGGTCTATCCGGGCTAC+TGG | 0.422624 | 8.1:-6263911 | None:intergenic |
| ATAATGGTTATGGAATTATT+GGG | 0.423024 | 8.1:+6269303 | MS.gene24854:CDS |
| TGACAAGGGAATTATTATCT+TGG | 0.424434 | 8.1:-6266066 | None:intergenic |
| GGTTTATTCAATGTAGTACT+TGG | 0.424721 | 8.1:-6265471 | None:intergenic |
| GCAGCGTACAGAGGTCTATC+CGG | 0.429308 | 8.1:-6263919 | None:intergenic |
| AACGACTTGCTACTGATTCT+CGG | 0.429342 | 8.1:+6265532 | MS.gene24854:CDS |
| AAATTCAAGCAATAACAAAA+TGG | 0.433171 | 8.1:+6270999 | MS.gene24854:CDS |
| CTCTGCCAGGGGACAACGGT+CGG | 0.434743 | 8.1:-6266604 | None:intergenic |
| TGAGGTTAAACCAAAAGAAA+AGG | 0.435183 | 8.1:+6266849 | MS.gene24854:CDS |
| TGCCTGTATCTTCAAATTGG+TGG | 0.435626 | 8.1:-6271068 | None:intergenic |
| TTTATTGAGTTGCCAAAGCT+TGG | 0.436808 | 8.1:-6269380 | None:intergenic |
| ATTGTATTGCAACTCTGAAC+AGG | 0.438724 | 8.1:-6269441 | None:intergenic |
| TGGTCTATTACTAGTAACTT+TGG | 0.439197 | 8.1:-6264102 | None:intergenic |
| GCTATTCGGGCTCCACGGTC+AGG | 0.441787 | 8.1:+6266433 | MS.gene24854:CDS |
| TTTCTTTCTGCAGCTTCCAT+GGG | 0.442842 | 8.1:+6271399 | MS.gene24854:intron |
| TTATCTGAAAGTGAAGAGTC+TGG | 0.443993 | 8.1:+6266820 | MS.gene24854:CDS |
| CTTCCCCGACCGTTGTCCCC+TGG | 0.444160 | 8.1:+6266599 | MS.gene24854:CDS |
| CCGGTTCCTTCAAACATAGA+TGG | 0.446868 | 8.1:+6268978 | MS.gene24854:CDS |
| CAGAAGACGTCAAGCGTATG+AGG | 0.447675 | 8.1:+6264238 | MS.gene24854:CDS |
| CCAGAAATCTTCATTTCCAC+TGG | 0.447790 | 8.1:-6271520 | None:intergenic |
| AGGCACAAAACTTGTTCTTC+TGG | 0.452853 | 8.1:-6266650 | None:intergenic |
| GTGAAGGGTGTTATCAAATC+TGG | 0.454632 | 8.1:+6267435 | MS.gene24854:CDS |
| CTGTTAGTTCAGACAAGGAT+AGG | 0.454762 | 8.1:+6266107 | MS.gene24854:CDS |
| GGAGTTATTGGCTGCTGTGA+AGG | 0.454792 | 8.1:+6267419 | MS.gene24854:CDS |
| TTATGGAATTATTGGGAAAC+CGG | 0.455569 | 8.1:+6269310 | MS.gene24854:CDS |
| CCATCTATGTTTGAAGGAAC+CGG | 0.457111 | 8.1:-6268978 | None:intergenic |
| ATGTGGCTGGTAATGATATT+GGG | 0.458028 | 8.1:+6266719 | MS.gene24854:CDS |
| TGTTAGGAAATCAGATGGAT+TGG | 0.459381 | 8.1:+6271155 | MS.gene24854:CDS |
| TACCTATTGTAGGTGATGGT+TGG | 0.460317 | 8.1:+6265394 | MS.gene24854:CDS |
| TCGGAGGATATTACTAGGTT+AGG | 0.460701 | 8.1:+6269733 | MS.gene24854:CDS |
| CTGCCAGGGGACAACGGTCG+GGG | 0.461724 | 8.1:-6266602 | None:intergenic |
| AATTCAAGTACTCCGGGGAT+TGG | 0.461777 | 8.1:+6271600 | MS.gene24854:CDS |
| TACCATGTTATGATCTCCCT+TGG | 0.463961 | 8.1:-6269105 | None:intergenic |
| ATGGTGTTCGGAGGCAAGGC+AGG | 0.465540 | 8.1:+6266977 | MS.gene24854:CDS |
| CGATCAGAAAGCTTCCTTGT+TGG | 0.466660 | 8.1:-6267227 | None:intergenic |
| TGTTCCAAAGGTGTCTAACT+TGG | 0.468790 | 8.1:+6266912 | MS.gene24854:CDS |
| AACTTCTATGGTGGATGTAA+AGG | 0.471009 | 8.1:+6264630 | MS.gene24854:CDS |
| GCTGGTAATGATATTGGGTT+AGG | 0.471374 | 8.1:+6266724 | MS.gene24854:CDS |
| AACAGCTGTTCCTAATGATT+GGG | 0.472608 | 8.1:+6266495 | MS.gene24854:CDS |
| CTGTCTCTGGAAGCAACACC+AGG | 0.473593 | 8.1:+6271210 | MS.gene24854:CDS |
| TACGCACCAATTCTCTCGTC+AGG | 0.474209 | 8.1:+6265292 | MS.gene24854:CDS |
| TTCCCTTGTCAACGATAAGC+GGG | 0.474934 | 8.1:+6266078 | MS.gene24854:CDS |
| GATGGAATCTCTCAGCAGAC+TGG | 0.475087 | 8.1:+6266010 | MS.gene24854:CDS |
| CCATATCGGAGGATATTACT+AGG | 0.476716 | 8.1:+6269728 | MS.gene24854:CDS |
| AATGGTCAAGCAAGCTGCAC+TGG | 0.477784 | 8.1:+6271017 | MS.gene24854:CDS |
| GTAAGCTTACCACTGATTCA+AGG | 0.479044 | 8.1:-6269517 | None:intergenic |
| GCATCAATTGTACCTGTCCT+TGG | 0.479173 | 8.1:-6269765 | None:intergenic |
| TCAGAAAGCTTCCTTGTTGG+TGG | 0.479190 | 8.1:-6267224 | None:intergenic |
| TTAGTACTATTAACACCAGC+TGG | 0.479647 | 8.1:-6266544 | None:intergenic |
| TACCACCAATTTGAAGATAC+AGG | 0.482843 | 8.1:+6271066 | MS.gene24854:CDS |
| TGATGGCCTGACGAGAGAAT+TGG | 0.482919 | 8.1:-6265298 | None:intergenic |
| AGAGTTGCAATACAATAGCT+TGG | 0.485205 | 8.1:+6269448 | MS.gene24854:CDS |
| GAGTTGCAATACAATAGCTT+GGG | 0.485947 | 8.1:+6269449 | MS.gene24854:CDS |
| GAGCGAAACTTACCTATTGT+AGG | 0.486176 | 8.1:+6265384 | MS.gene24854:CDS |
| AAGAACTTGGAGATGGTGTT+CGG | 0.487321 | 8.1:+6266965 | MS.gene24854:CDS |
| AGAGACAGAGGAGAAGCATA+TGG | 0.488395 | 8.1:-6271195 | None:intergenic |
| TGAGAAATTGGTGATGGGCT+CGG | 0.489386 | 8.1:-6271429 | None:intergenic |
| AGAAGAGGATGAAGCCATAT+CGG | 0.489438 | 8.1:+6269714 | MS.gene24854:CDS |
| TCGGTTATCAAACTGAAGAA+AGG | 0.490916 | 8.1:-6267581 | None:intergenic |
| CAAGGTAATTCAAGTACTCC+GGG | 0.491280 | 8.1:+6271594 | MS.gene24854:CDS |
| GCTTGACGTCTTCTGGTACT+GGG | 0.492283 | 8.1:-6264230 | None:intergenic |
| ATCTAATGAAGCAGCTATGT+TGG | 0.493550 | 8.1:-6263953 | None:intergenic |
| GAACAACCGGTGACATCTTG+GGG | 0.495883 | 8.1:-6266468 | None:intergenic |
| CGACCGTTGTCCCCTGGCAG+AGG | 0.497279 | 8.1:+6266605 | MS.gene24854:CDS |
| GGCATTTGTTAAATGGACAT+TGG | 0.499248 | 8.1:+6271038 | MS.gene24854:CDS |
| TATGCTGGGAAGAAGCAGTT+AGG | 0.500503 | 8.1:-6271128 | None:intergenic |
| TGAAGAGTCTGGGGTGGCTG+AGG | 0.500599 | 8.1:+6266831 | MS.gene24854:CDS |
| TCAGATGAATTATTTAAAGC+AGG | 0.502277 | 8.1:-6271492 | None:intergenic |
| GAACTAGATGGAGATTCATC+AGG | 0.502685 | 8.1:-6264183 | None:intergenic |
| TCCCAACCATCACCTACAAT+AGG | 0.505403 | 8.1:-6265396 | None:intergenic |
| CATCTGCTTCCAAAATGGGC+TGG | 0.505424 | 8.1:-6267555 | None:intergenic |
| ACTGAAAATTAGATAGTGAA+TGG | 0.507055 | 8.1:-6269262 | None:intergenic |
| GCTGCTTCATTAGATAGATC+AGG | 0.508302 | 8.1:+6263961 | MS.gene24854:CDS |
| ACAGCTGTTCTATGAACAAC+CGG | 0.508478 | 8.1:-6266481 | None:intergenic |
| ATGTTTGAAGGAACCGGAGT+TGG | 0.510195 | 8.1:-6268972 | None:intergenic |
| ATCAGCAAAAGTCGGAAGAA+AGG | 0.510210 | 8.1:+6264575 | MS.gene24854:CDS |
| AGTCTTGGGGCCAAGCGGTA+AGG | 0.510377 | 8.1:+6264510 | MS.gene24854:CDS |
| TCCAGCAAAACATGGGGATG+TGG | 0.511478 | 8.1:+6264050 | MS.gene24854:CDS |
| CTCTTCTTCACATTTACAGG+TGG | 0.513574 | 8.1:-6264430 | None:intergenic |
| TGATGCATCTTCCAGTAGCC+CGG | 0.514211 | 8.1:+6263900 | MS.gene24854:CDS |
| TCACAACCATCTATGTTTGA+AGG | 0.514741 | 8.1:-6268984 | None:intergenic |
| GAACTACTTCTCAACATGTT+GGG | 0.516077 | 8.1:-6264027 | None:intergenic |
| AACTTACCTATTGTAGGTGA+TGG | 0.516763 | 8.1:+6265390 | MS.gene24854:CDS |
| GAATTGTTCCTTGATGATGT+CGG | 0.517234 | 8.1:+6271564 | MS.gene24854:CDS |
| TCTTGGCCGTTTCTATGGGT+AGG | 0.518049 | 8.1:-6266049 | None:intergenic |
| TTCGGAGGCAAGGCAGGACG+GGG | 0.518811 | 8.1:+6266983 | MS.gene24854:CDS |
| TCTCCATCTAGTTCTGCAAA+AGG | 0.519310 | 8.1:+6264192 | MS.gene24854:CDS |
| GAGTTATTGGCTGCTGTGAA+GGG | 0.519777 | 8.1:+6267420 | MS.gene24854:CDS |
| AAGAAGAGATCTCGAGTTGA+AGG | 0.521812 | 8.1:+6264445 | MS.gene24854:CDS |
| ATAATCTGCTGCTGCACTGA+TGG | 0.522575 | 8.1:-6267279 | None:intergenic |
| AAGCACTCTGACTCCAACTC+CGG | 0.524066 | 8.1:+6268959 | MS.gene24854:CDS |
| TGAACGCCAACCTTACCGCT+TGG | 0.526004 | 8.1:-6264520 | None:intergenic |
| CTTCCAAAATGGGCTGGAGA+AGG | 0.528410 | 8.1:-6267549 | None:intergenic |
| GGATTCGTGAGACGCTCAGC+TGG | 0.528645 | 8.1:+6266745 | MS.gene24854:CDS |
| TTAAACCAAAAGAAAAGGGC+AGG | 0.529000 | 8.1:+6266854 | MS.gene24854:CDS |
| GAGGTTAAACCAAAAGAAAA+GGG | 0.529191 | 8.1:+6266850 | MS.gene24854:CDS |
| TCAAGGTAATTCAAGTACTC+CGG | 0.529755 | 8.1:+6271593 | MS.gene24854:CDS |
| TCATCATTACTCGAAACAAC+AGG | 0.530335 | 8.1:-6266670 | None:intergenic |
| ATTATCTTGGCCGTTTCTAT+GGG | 0.530350 | 8.1:-6266053 | None:intergenic |
| AAATTCTGAGAAATTGGTGA+TGG | 0.530581 | 8.1:-6271435 | None:intergenic |
| CTGATCTAGTTCAAAACCAC+CGG | 0.534363 | 8.1:-6264557 | None:intergenic |
| AATCTCTCAGCAGACTGGGT+TGG | 0.535573 | 8.1:+6266015 | MS.gene24854:CDS |
| AAGGAAGCTTTCTGATCGTA+AGG | 0.535690 | 8.1:+6267232 | MS.gene24854:CDS |
| TCTCAATGCCACAAGGTCAC+TGG | 0.536594 | 8.1:+6267011 | MS.gene24854:CDS |
| TAGGAAATCAGATGGATTGG+AGG | 0.537127 | 8.1:+6271158 | MS.gene24854:CDS |
| TGTTCGGAGGCAAGGCAGGA+CGG | 0.537630 | 8.1:+6266981 | MS.gene24854:CDS |
| ACGTCTTCTGGTACTGGGGA+TGG | 0.539976 | 8.1:-6264225 | None:intergenic |
| AGTAGTTCTCCAGCAAAACA+TGG | 0.541325 | 8.1:+6264042 | MS.gene24854:CDS |
| TATCTGAAAGTGAAGAGTCT+GGG | 0.542796 | 8.1:+6266821 | MS.gene24854:CDS |
| GAAGAAAGGACCAAAAGTCT+TGG | 0.542999 | 8.1:+6264589 | MS.gene24854:CDS |
| TAAAGCATTAATGTCTAGCT+TGG | 0.543499 | 8.1:+6269418 | MS.gene24854:CDS |
| GATGGAGAATTAGAATTGAG+TGG | 0.544477 | 8.1:+6269230 | MS.gene24854:CDS |
| CCAGTAAGTAATATCTTCCT+CGG | 0.545955 | 8.1:-6267600 | None:intergenic |
| TTATGATCTCCCTTGGGCAG+TGG | 0.546847 | 8.1:-6269098 | None:intergenic |
| CACATCAGAAACAGCATCCA+CGG | 0.547761 | 8.1:-6266701 | None:intergenic |
| GAAGAGATAGATCTGAAAGC+TGG | 0.548176 | 8.1:+6266883 | MS.gene24854:CDS |
| GGAGATGGTGTTCGGAGGCA+AGG | 0.549572 | 8.1:+6266973 | MS.gene24854:CDS |
| GTTAGAGAACTTCCAATCCC+CGG | 0.552035 | 8.1:-6271612 | None:intergenic |
| AGAACTACTTCTCAACATGT+TGG | 0.553236 | 8.1:-6264028 | None:intergenic |
| CAGCGTACAGAGGTCTATCC+GGG | 0.553740 | 8.1:-6263918 | None:intergenic |
| AACTTCATTGAATACAGATA+AGG | 0.557917 | 8.1:-6264404 | None:intergenic |
| AAGGATGTGATAAGAATGAA+AGG | 0.559534 | 8.1:+6267097 | MS.gene24854:CDS |
| ATATCACTTTCATCATGTGC+CGG | 0.560029 | 8.1:-6269329 | None:intergenic |
| CTTGACGTCTTCTGGTACTG+GGG | 0.560535 | 8.1:-6264229 | None:intergenic |
| CGCTCAGTCTTGGGGCCAAG+CGG | 0.560603 | 8.1:+6264505 | MS.gene24854:CDS |
| TTTCCTAACAATGCTATGCT+GGG | 0.562049 | 8.1:-6271142 | None:intergenic |
| GCTGCTGCACTGATGGCAGT+AGG | 0.562066 | 8.1:-6267272 | None:intergenic |
| TTGGGGCCAAGCGGTAAGGT+TGG | 0.562692 | 8.1:+6264514 | MS.gene24854:CDS |
| TTTGTATTCAAGCACTGTGA+AGG | 0.563609 | 8.1:+6264266 | MS.gene24854:CDS |
| ACATCCACCATAGAAGTTCG+AGG | 0.563683 | 8.1:-6264625 | None:intergenic |
| CGTACCCCTACCCATAGAAA+CGG | 0.564946 | 8.1:+6266043 | MS.gene24854:CDS |
| GATGCTGTTTCTGATGTGGC+TGG | 0.565211 | 8.1:+6266706 | MS.gene24854:CDS |
| AGCATTGTTAGGAAATCAGA+TGG | 0.566367 | 8.1:+6271150 | MS.gene24854:CDS |
| TGAACTAGATCAGCAAAAGT+CGG | 0.568638 | 8.1:+6264567 | MS.gene24854:CDS |
| AGGCGAGCTTTACCAAGGAC+AGG | 0.572551 | 8.1:+6269753 | MS.gene24854:CDS |
| TCAGAAACAGCATCCACGGC+AGG | 0.573599 | 8.1:-6266697 | None:intergenic |
| TCTTCTTCACATTTACAGGT+GGG | 0.574951 | 8.1:-6264429 | None:intergenic |
| TGGCCTCTGCCAGGGGACAA+CGG | 0.575112 | 8.1:-6266608 | None:intergenic |
| ACCATGTTATGATCTCCCTT+GGG | 0.576619 | 8.1:-6269104 | None:intergenic |
| TAGTACTATTAACACCAGCT+GGG | 0.577011 | 8.1:-6266543 | None:intergenic |
| CCAATGACATCTGAGAAGCT+TGG | 0.577012 | 8.1:+6267036 | MS.gene24854:CDS |
| ATGGAATCTCTCAGCAGACT+GGG | 0.577276 | 8.1:+6266011 | MS.gene24854:CDS |
| TGTTAGTTCAGACAAGGATA+GGG | 0.577411 | 8.1:+6266108 | MS.gene24854:CDS |
| AGGTAGCTTTCGAGAATGCA+TGG | 0.577533 | 8.1:+6263981 | MS.gene24854:CDS |
| ACGTGTGAAAATGTTTAATG+AGG | 0.580182 | 8.1:+6264381 | MS.gene24854:CDS |
| CATAAGCTGTCACAACAAGT+TGG | 0.581811 | 8.1:-6270174 | None:intergenic |
| AGCTGGACAAAATGTTCCAA+AGG | 0.582515 | 8.1:+6266900 | MS.gene24854:CDS |
| ATTCTCTCGTCAGGCCATCA+GGG | 0.584314 | 8.1:+6265301 | MS.gene24854:CDS |
| CATCCACCATAGAAGTTCGA+GGG | 0.585104 | 8.1:-6264624 | None:intergenic |
| TGGACTTGACCTTGAATCAG+TGG | 0.585412 | 8.1:+6269508 | MS.gene24854:CDS |
| AGAAAAGTTACCACTGCCCA+AGG | 0.585947 | 8.1:+6269088 | MS.gene24854:CDS |
| CGTGGATGCTGTTTCTGATG+TGG | 0.587597 | 8.1:+6266702 | MS.gene24854:CDS |
| TTGGCCGTTTCTATGGGTAG+GGG | 0.592568 | 8.1:-6266047 | None:intergenic |
| TCTCTATCAACAGTCCCTGA+TGG | 0.593157 | 8.1:-6265315 | None:intergenic |
| ATAGAGATAAAGAAAAGCTA+CGG | 0.593295 | 8.1:+6265331 | MS.gene24854:CDS |
| TGGAATCCTTGCAGCAAGGT+CGG | 0.595199 | 8.1:+6267197 | MS.gene24854:intron |
| GCCTGAAATGGTGCAAGAAG+AGG | 0.597062 | 8.1:+6269699 | MS.gene24854:intron |
| CAATCCATATCTATTAACAA+TGG | 0.597593 | 8.1:-6269009 | None:intergenic |
| CCTCTGTACGCTGCGCAGCG+TGG | 0.597854 | 8.1:+6263928 | MS.gene24854:CDS |
| CATTGGTGCCAGTGACCTTG+TGG | 0.600420 | 8.1:-6267019 | None:intergenic |
| AAATGGGCTGGAGAAGGAGT+AGG | 0.600944 | 8.1:-6267543 | None:intergenic |
| TGGGCTCGGCTGTGAACCCA+TGG | 0.602595 | 8.1:-6271415 | None:intergenic |
| GTTCAAGGTCATCATGTCAC+CGG | 0.603105 | 8.1:+6264538 | MS.gene24854:CDS |
| AATTCTGAGAAATTGGTGAT+GGG | 0.605189 | 8.1:-6271434 | None:intergenic |
| AGAAGAGATCTCGAGTTGAA+GGG | 0.605427 | 8.1:+6264446 | MS.gene24854:CDS |
| CAAGGTCATCATGTCACCGG+TGG | 0.606676 | 8.1:+6264541 | MS.gene24854:CDS |
| GATAAAGCTGACGAAGGTGA+AGG | 0.607931 | 8.1:-6266802 | None:intergenic |
| GTAGTTCTCCAGCAAAACAT+GGG | 0.608016 | 8.1:+6264043 | MS.gene24854:CDS |
| TTGGGTCAGTAGATGGACAC+GGG | 0.609726 | 8.1:+6267397 | MS.gene24854:CDS |
| GTTGCAGCTAGCAAATCAGA+TGG | 0.614494 | 8.1:+6265992 | MS.gene24854:CDS |
| ATTCCCTTGTCAACGATAAG+CGG | 0.615124 | 8.1:+6266077 | MS.gene24854:CDS |
| AGTACTATTAACACCAGCTG+GGG | 0.615616 | 8.1:-6266542 | None:intergenic |
| GCTATAAGTCGTTGACAGAG+AGG | 0.616818 | 8.1:-6269128 | None:intergenic |
| TCAGAAGAAGATCGTAGCGG+TGG | 0.617335 | 8.1:+6269161 | MS.gene24854:CDS |
| TAAATGACCGCTCAGTCTTG+GGG | 0.617460 | 8.1:+6264497 | MS.gene24854:CDS |
| ATTGTTCCTTGATGATGTCG+GGG | 0.617816 | 8.1:+6271566 | MS.gene24854:CDS |
| GCTTGTCGAGGTGCATCGAG+TGG | 0.617837 | 8.1:+6270973 | MS.gene24854:CDS |
| ATTAATTGACAGGCTTGTCG+AGG | 0.619306 | 8.1:+6270961 | MS.gene24854:intron |
| ATCTGAAAGTGAAGAGTCTG+GGG | 0.621108 | 8.1:+6266822 | MS.gene24854:CDS |
| CAACTAAGAAGTGCAAGACA+AGG | 0.626347 | 8.1:+6267078 | MS.gene24854:CDS |
| TTGGCTGTGAAAGAGATGTC+AGG | 0.626925 | 8.1:+6269033 | MS.gene24854:CDS |
| TACTAACAATCGCAAACGTG+TGG | 0.628851 | 8.1:+6266561 | MS.gene24854:CDS |
| GCAACTCCTGAACCTGACCG+TGG | 0.628986 | 8.1:-6266445 | None:intergenic |
| CCACGCTGCGCAGCGTACAG+AGG | 0.631484 | 8.1:-6263928 | None:intergenic |
| AGAAGACGTCAAGCGTATGA+GGG | 0.632040 | 8.1:+6264239 | MS.gene24854:CDS |
| GGCGCAGTCTCAATGCCACA+AGG | 0.632240 | 8.1:+6267004 | MS.gene24854:CDS |
| TCTGGTGAAGAACTTGGAGA+TGG | 0.633085 | 8.1:+6266958 | MS.gene24854:CDS |
| AGGTCGGTCGTCCACCAACA+AGG | 0.634464 | 8.1:+6267213 | MS.gene24854:CDS |
| GCGCCCTCGAACTTCTATGG+TGG | 0.635597 | 8.1:+6264621 | MS.gene24854:CDS |
| AATTCATCTGAGCAAACCAG+TGG | 0.638610 | 8.1:+6271504 | MS.gene24854:CDS |
| GACCCCGCTTATCGTTGACA+AGG | 0.638938 | 8.1:-6266081 | None:intergenic |
| TGAAGATTTCTGGTCAAACA+GGG | 0.639834 | 8.1:+6271530 | MS.gene24854:CDS |
| ATACTGCTATTCGGGCTCCA+CGG | 0.639890 | 8.1:+6266428 | MS.gene24854:CDS |
| AACTTGGAGATGGTGTTCGG+AGG | 0.639929 | 8.1:+6266968 | MS.gene24854:CDS |
| GTTGGGTCAGTAGATGGACA+CGG | 0.640060 | 8.1:+6267396 | MS.gene24854:intron |
| AGAGGATGAAGCCATATCGG+AGG | 0.640561 | 8.1:+6269717 | MS.gene24854:CDS |
| TAATGATGAAGCTCCTGCCG+TGG | 0.642986 | 8.1:+6266684 | MS.gene24854:CDS |
| CCATAAGTCTAATCGTCATG+TGG | 0.646801 | 8.1:+6264122 | MS.gene24854:CDS |
| TCGTTCTGTTAGTTCAGACA+AGG | 0.647341 | 8.1:+6266102 | MS.gene24854:CDS |
| CGCTTGGCCCCAAGACTGAG+CGG | 0.652842 | 8.1:-6264504 | None:intergenic |
| CTTTCAGATAAAGCTGACGA+AGG | 0.654396 | 8.1:-6266808 | None:intergenic |
| TTTCTTCAGTTTGATAACCG+AGG | 0.657033 | 8.1:+6267583 | MS.gene24854:CDS |
| AACAACCGGTGACATCTTGG+GGG | 0.661134 | 8.1:-6266467 | None:intergenic |
| TATTACTTACTGGAAGCAGA+AGG | 0.666092 | 8.1:+6267610 | MS.gene24854:CDS |
| TTGTTCCTTGATGATGTCGG+GGG | 0.666945 | 8.1:+6271567 | MS.gene24854:CDS |
| AGGTTAGGCGAGCTTTACCA+AGG | 0.670077 | 8.1:+6269748 | MS.gene24854:CDS |
| ATTCAAGCACTGTGAAGGCG+AGG | 0.671180 | 8.1:+6264271 | MS.gene24854:CDS |
| GGTGTTGCTTCCAGAGACAG+AGG | 0.671711 | 8.1:-6271207 | None:intergenic |
| GAAAAGTTACCACTGCCCAA+GGG | 0.674314 | 8.1:+6269089 | MS.gene24854:CDS |
| TGAAAGTGAAGAGTCTGGGG+TGG | 0.689292 | 8.1:+6266825 | MS.gene24854:CDS |
| TCCCTTGTCAACGATAAGCG+GGG | 0.697454 | 8.1:+6266079 | MS.gene24854:CDS |
| ACCCCGCTTATCGTTGACAA+GGG | 0.697989 | 8.1:-6266080 | None:intergenic |
| GTACTATTAACACCAGCTGG+GGG | 0.704073 | 8.1:-6266541 | None:intergenic |
| GGTTTCCAGGAAACTAAACA+GGG | 0.704253 | 8.1:+6265501 | MS.gene24854:CDS |
| TAGTTCTCCAGCAAAACATG+GGG | 0.711005 | 8.1:+6264044 | MS.gene24854:CDS |
| GCCCAAGGGAGATCATAACA+TGG | 0.735920 | 8.1:+6269103 | MS.gene24854:CDS |
| TGGGTCAGTAGATGGACACG+GGG | 0.750888 | 8.1:+6267398 | MS.gene24854:CDS |
| GACAGCTTATGAGAAATACA+CGG | 0.751119 | 8.1:+6270186 | MS.gene24854:CDS |
| AAGGTAATTCAAGTACTCCG+GGG | 0.755279 | 8.1:+6271595 | MS.gene24854:CDS |
| ATATCAGAAGAAGATCGTAG+CGG | 0.769117 | 8.1:+6269158 | MS.gene24854:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6263880 | 6271624 | 6263880 | ID=MS.gene24854 |
| chr8.1 | mRNA | 6263880 | 6271624 | 6263880 | ID=MS.gene24854.t1;Parent=MS.gene24854 |
| chr8.1 | exon | 6263880 | 6264292 | 6263880 | ID=MS.gene24854.t1.exon1;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6263880 | 6264292 | 6263880 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6264378 | 6264651 | 6264378 | ID=MS.gene24854.t1.exon2;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6264378 | 6264651 | 6264378 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6265285 | 6265586 | 6265285 | ID=MS.gene24854.t1.exon3;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6265285 | 6265586 | 6265285 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6265970 | 6266152 | 6265970 | ID=MS.gene24854.t1.exon4;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6265970 | 6266152 | 6265970 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6266372 | 6267118 | 6266372 | ID=MS.gene24854.t1.exon5;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6266372 | 6267118 | 6266372 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6267211 | 6267305 | 6267211 | ID=MS.gene24854.t1.exon6;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6267211 | 6267305 | 6267211 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6267397 | 6267456 | 6267397 | ID=MS.gene24854.t1.exon7;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6267397 | 6267456 | 6267397 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6267543 | 6267631 | 6267543 | ID=MS.gene24854.t1.exon8;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6267543 | 6267631 | 6267543 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6268945 | 6269529 | 6268945 | ID=MS.gene24854.t1.exon9;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6268945 | 6269529 | 6268945 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6269700 | 6269774 | 6269700 | ID=MS.gene24854.t1.exon10;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6269700 | 6269774 | 6269700 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6269990 | 6270060 | 6269990 | ID=MS.gene24854.t1.exon11;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6269990 | 6270060 | 6269990 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6270150 | 6270207 | 6270150 | ID=MS.gene24854.t1.exon12;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6270150 | 6270207 | 6270150 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6270973 | 6271231 | 6270973 | ID=MS.gene24854.t1.exon13;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6270973 | 6271231 | 6270973 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| chr8.1 | exon | 6271412 | 6271624 | 6271412 | ID=MS.gene24854.t1.exon14;Parent=MS.gene24854.t1 |
| chr8.1 | CDS | 6271412 | 6271624 | 6271412 | ID=cds.MS.gene24854.t1;Parent=MS.gene24854.t1 |
| Gene Sequence |
| Protein sequence |
