Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24859.t1 | XP_004507965.1 | 65.1 | 482 | 86 | 2 | 1 | 401 | 1 | 481 | 2.50E-179 | 638.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24859.t1 | Q9M2U3 | 27.4 | 328 | 196 | 10 | 59 | 358 | 53 | 366 | 3.9e-32 | 140.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24859.t1 | A0A1S2YPM5 | 65.1 | 482 | 86 | 2 | 1 | 401 | 1 | 481 | 1.8e-179 | 638.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051837 | MS.gene24859 | 0.826739 | 2.30E-54 | -1.69E-46 |
| MS.gene051840 | MS.gene24859 | 0.915351 | 6.53E-85 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24859.t1 | AT5G12010 | 62.921 | 356 | 130 | 2 | 47 | 401 | 148 | 502 | 1.26e-175 | 499 |
| MS.gene24859.t1 | AT4G29780 | 63.456 | 353 | 127 | 2 | 50 | 401 | 189 | 540 | 1.49e-171 | 490 |
| MS.gene24859.t1 | AT3G55350 | 27.492 | 331 | 198 | 10 | 56 | 358 | 50 | 366 | 2.86e-36 | 137 |
| MS.gene24859.t1 | AT3G63270 | 29.524 | 315 | 188 | 9 | 59 | 347 | 43 | 349 | 4.12e-36 | 136 |
| MS.gene24859.t1 | AT3G19120 | 26.774 | 310 | 188 | 8 | 71 | 359 | 114 | 405 | 1.61e-24 | 105 |
| MS.gene24859.t1 | AT5G41980 | 21.493 | 335 | 230 | 10 | 45 | 373 | 16 | 323 | 6.52e-12 | 67.0 |
Find 93 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACATTGGGTTCTATTTC+TGG | 0.054773 | 8.2:-6718375 | None:intergenic |
| CAAGAGTTTGAAGGTCTTTC+TGG | 0.077021 | 8.2:+6718837 | MS.gene24859:CDS |
| CCCTTTAATGGATGAAATTT+TGG | 0.084310 | 8.2:+6719148 | MS.gene24859:CDS |
| ATTTGGGTTGTTGGAAATTC+TGG | 0.130248 | 8.2:+6719122 | MS.gene24859:CDS |
| TGCTCATCCGAAAAGATTTC+TGG | 0.137677 | 8.2:-6718542 | None:intergenic |
| AGGGAGATTTGAAAGATATT+TGG | 0.180387 | 8.2:+6719105 | MS.gene24859:CDS |
| ATTAGAGTTAGGTGCAATTA+TGG | 0.208475 | 8.2:-6718901 | None:intergenic |
| CAACAAAGAAAACACGTTTA+TGG | 0.213487 | 8.2:+6718454 | MS.gene24859:CDS |
| AGAAACAAACACATGGTTAT+TGG | 0.217554 | 8.2:+6718309 | None:intergenic |
| AAATTCTGGGTACCCTTTAA+TGG | 0.222711 | 8.2:+6719136 | MS.gene24859:CDS |
| TTGCCACAGGTGATCCTTAT+AGG | 0.241673 | 8.2:+6718679 | MS.gene24859:CDS |
| ACCAAAATTTCATCCATTAA+AGG | 0.250185 | 8.2:-6719149 | None:intergenic |
| ACATAGTTCCCACCAGTTAT+TGG | 0.269078 | 8.2:-6718490 | None:intergenic |
| AGCGAGTGGCAGCTTGTATT+TGG | 0.276196 | 8.2:+6718652 | MS.gene24859:CDS |
| AACAAAGAAAACACGTTTAT+GGG | 0.283594 | 8.2:+6718455 | MS.gene24859:CDS |
| AGATGAAAATAACATGAAAT+TGG | 0.297534 | 8.2:+6718809 | MS.gene24859:CDS |
| GGGAGATTTGAAAGATATTT+GGG | 0.307574 | 8.2:+6719106 | MS.gene24859:CDS |
| CGTTCTGAAACAAGCCTATA+AGG | 0.319992 | 8.2:-6718693 | None:intergenic |
| TTATGCCAAAGTTCATTCTA+TGG | 0.323633 | 8.2:+6718784 | MS.gene24859:CDS |
| TTGAAAGATATTTGGGTTGT+TGG | 0.335622 | 8.2:+6719113 | MS.gene24859:CDS |
| TGTTTCAGAACGATTTGGTT+TGG | 0.338994 | 8.2:+6718704 | MS.gene24859:CDS |
| GAAAACACGTTTATGGGTTA+AGG | 0.348667 | 8.2:+6718461 | MS.gene24859:CDS |
| TTACATTGGGTTCTATTTCT+GGG | 0.353773 | 8.2:-6718374 | None:intergenic |
| AATTCGTCATCCGGAAAATC+AGG | 0.356985 | 8.2:-6718519 | None:intergenic |
| AAAGAATGAACATCTAGATT+TGG | 0.358315 | 8.2:-6718345 | None:intergenic |
| TAAGAATTCACATTAGAGTT+AGG | 0.361342 | 8.2:-6718912 | None:intergenic |
| GTTTCAGAACGATTTGGTTT+GGG | 0.363045 | 8.2:+6718705 | MS.gene24859:CDS |
| CCAAAATTTCATCCATTAAA+GGG | 0.367390 | 8.2:-6719148 | None:intergenic |
| GAAACAAACACATGGTTATT+GGG | 0.369459 | 8.2:+6718310 | None:intergenic |
| CGGCTCTTATTCTGATGAAC+AGG | 0.383107 | 8.2:+6719046 | MS.gene24859:CDS |
| AGGCTTGTTTCAGAACGATT+TGG | 0.388217 | 8.2:+6718699 | MS.gene24859:CDS |
| TTAAGGACCGTTCCAATAAC+TGG | 0.402448 | 8.2:+6718478 | MS.gene24859:CDS |
| CTCTGTCCTCTTCTGCAAAC+AGG | 0.406978 | 8.2:-6719282 | None:intergenic |
| TTTGGGTTGTTGGAAATTCT+GGG | 0.409651 | 8.2:+6719123 | MS.gene24859:CDS |
| TGCATAATATTTGTGAAATG+AGG | 0.413774 | 8.2:+6719351 | MS.gene24859:CDS |
| TTAGAGTTAGGTGCAATTAT+GGG | 0.423648 | 8.2:-6718900 | None:intergenic |
| GTAAGATTCTTACGTGCATA+AGG | 0.447259 | 8.2:-6719173 | None:intergenic |
| CAGGGTGTGGTTGAGTCTAA+AGG | 0.454269 | 8.2:+6718993 | MS.gene24859:CDS |
| CTGTTGCATCGTGGCCGTGC+TGG | 0.455627 | 8.2:+6719488 | MS.gene24859:CDS |
| TTTGTTTAAGAGAATTATGA+AGG | 0.459044 | 8.2:+6719085 | MS.gene24859:CDS |
| TTGGTTAAACAAGAGTTTGA+AGG | 0.464460 | 8.2:+6718828 | MS.gene24859:CDS |
| AGGGTGTGGTTGAGTCTAAA+GGG | 0.470231 | 8.2:+6718994 | MS.gene24859:CDS |
| CTGTTGATGCTGTTCAAGCT+AGG | 0.485234 | 8.2:+6719447 | MS.gene24859:CDS |
| TACAAGCTGCCACTCGCTGC+CGG | 0.485706 | 8.2:-6718647 | None:intergenic |
| GATTTCTGGAATTCGTCATC+CGG | 0.490601 | 8.2:-6718528 | None:intergenic |
| CAACAAGCACCTAAAATGTT+AGG | 0.491038 | 8.2:-6719323 | None:intergenic |
| GGTGGTCCTGTTTGCAGAAG+AGG | 0.491132 | 8.2:+6719276 | MS.gene24859:CDS |
| ATGCACGTAAGAATCTTACT+TGG | 0.491157 | 8.2:+6719177 | MS.gene24859:CDS |
| GAGGACAGAGGTGAAAATTG+AGG | 0.495121 | 8.2:+6719295 | MS.gene24859:CDS |
| AAGAAACTTCACAAACTCAA+TGG | 0.501636 | 8.2:+6718421 | MS.gene24859:CDS |
| ATGAGAAGATGGATCCTCAA+TGG | 0.515817 | 8.2:+6719375 | MS.gene24859:CDS |
| TCTGGCCATAGAATGAACTT+TGG | 0.519251 | 8.2:-6718789 | None:intergenic |
| AGAAAGTTGAGGATATTCAG+AGG | 0.534860 | 8.2:+6719219 | MS.gene24859:CDS |
| TCACCAACGTGTGTATTGGT+TGG | 0.534897 | 8.2:+6719021 | MS.gene24859:CDS |
| TGAAATGAGGAATGAGAAGA+TGG | 0.537936 | 8.2:+6719364 | MS.gene24859:CDS |
| AACGTGTGTATTGGTTGGCC+CGG | 0.538440 | 8.2:+6719026 | MS.gene24859:CDS |
| TCTGGAATATCAAATGTTGG+TGG | 0.538854 | 8.2:+6718855 | MS.gene24859:CDS |
| GATGCATTTGCGAGGCTGAA+AGG | 0.540087 | 8.2:+6719251 | MS.gene24859:CDS |
| TGTTCATCAGAATAAGAGCC+GGG | 0.542092 | 8.2:-6719044 | None:intergenic |
| CTTTCTGGAATATCAAATGT+TGG | 0.544372 | 8.2:+6718852 | MS.gene24859:CDS |
| TTCTCTGCATATAAACTCGA+AGG | 0.548386 | 8.2:-6718571 | None:intergenic |
| ATCTAGATTTGGAGATGGAG+TGG | 0.548743 | 8.2:-6718334 | None:intergenic |
| AAAAGTTTAAAATTCCATTG+AGG | 0.551481 | 8.2:-6719389 | None:intergenic |
| AGGAACAGCATCGCGGAGCA+TGG | 0.552544 | 8.2:-6718622 | None:intergenic |
| TCCGCGATGCTGTTCCTCTC+CGG | 0.557407 | 8.2:+6718628 | MS.gene24859:CDS |
| TGTTCCTCTCCGGCAGCGAG+TGG | 0.563934 | 8.2:+6718638 | MS.gene24859:CDS |
| TGTTGATGCTGTTCAAGCTA+GGG | 0.564424 | 8.2:+6719448 | MS.gene24859:CDS |
| CTGTTCATCAGAATAAGAGC+CGG | 0.565393 | 8.2:-6719045 | None:intergenic |
| CATTTGCGAGGCTGAAAGGA+AGG | 0.585427 | 8.2:+6719255 | MS.gene24859:CDS |
| TGAACATCTAGATTTGGAGA+TGG | 0.585549 | 8.2:-6718339 | None:intergenic |
| GAAAGTTGAGGATATTCAGA+GGG | 0.587529 | 8.2:+6719220 | MS.gene24859:CDS |
| TTGTTTAAGAGAATTATGAA+GGG | 0.593636 | 8.2:+6719086 | MS.gene24859:CDS |
| GATGAGATGATGGCTGAGAA+TGG | 0.594397 | 8.2:+6719416 | MS.gene24859:CDS |
| GCTGCCACTCGCTGCCGGAG+AGG | 0.599161 | 8.2:-6718642 | None:intergenic |
| TGTATTTGGAGACTTGCCAC+AGG | 0.599632 | 8.2:+6718666 | MS.gene24859:CDS |
| ATAAAAGAGTATTGCCAGCA+CGG | 0.616412 | 8.2:-6719502 | None:intergenic |
| ATTCGTCATCCGGAAAATCA+GGG | 0.620213 | 8.2:-6718518 | None:intergenic |
| TAGAACGAGTTTGTGACATG+TGG | 0.627672 | 8.2:-6718733 | None:intergenic |
| AGGACCGTTCCAATAACTGG+TGG | 0.631217 | 8.2:+6718481 | MS.gene24859:CDS |
| TTTGTGAAGTTTCTTCACAG+TGG | 0.635254 | 8.2:-6718413 | None:intergenic |
| CGCGTTTAATGAGAAAGTTG+AGG | 0.639049 | 8.2:+6719208 | MS.gene24859:CDS |
| GTTCCCACCAGTTATTGGAA+CGG | 0.646694 | 8.2:-6718485 | None:intergenic |
| GGACCGTTCCAATAACTGGT+GGG | 0.667948 | 8.2:+6718482 | MS.gene24859:CDS |
| TTGCTAAAGATGCATTTGCG+AGG | 0.673268 | 8.2:+6719243 | MS.gene24859:CDS |
| TAGAACCCAATGTAAACACA+AGG | 0.675809 | 8.2:+6718382 | MS.gene24859:CDS |
| TTGCGAGGCTGAAAGGAAGG+TGG | 0.678195 | 8.2:+6719258 | MS.gene24859:CDS |
| GGGCCAACCAATACACACGT+TGG | 0.693523 | 8.2:-6719024 | None:intergenic |
| GCCGGAGAGGAACAGCATCG+CGG | 0.701371 | 8.2:-6718629 | None:intergenic |
| TCAATAAAAGACACACTCAG+AGG | 0.710570 | 8.2:+6718940 | MS.gene24859:CDS |
| CTGTTTGCAGAAGAGGACAG+AGG | 0.725702 | 8.2:+6719283 | MS.gene24859:CDS |
| GCTCATGATCTGTTGCATCG+TGG | 0.741199 | 8.2:+6719479 | MS.gene24859:CDS |
| CGTCATCCGGAAAATCAGGG+TGG | 0.743708 | 8.2:-6718515 | None:intergenic |
| AAGCCTATAAGGATCACCTG+TGG | 0.743894 | 8.2:-6718682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATGAAAATAACATGAAAT+TGG | + | chr8.2:6718809-6718828 | MS.gene24859:CDS | 20.0% |
| !! | TTGTTTAAGAGAATTATGAA+GGG | + | chr8.2:6719086-6719105 | MS.gene24859:CDS | 20.0% |
| !! | TTTGTTTAAGAGAATTATGA+AGG | + | chr8.2:6719085-6719104 | MS.gene24859:CDS | 20.0% |
| !!! | AAAAGTTTAAAATTCCATTG+AGG | - | chr8.2:6719392-6719411 | None:intergenic | 20.0% |
| !!! | AATTTCATGTTATTTTCATC+TGG | - | chr8.2:6718810-6718829 | None:intergenic | 20.0% |
| ! | AAAGAATGAACATCTAGATT+TGG | - | chr8.2:6718348-6718367 | None:intergenic | 25.0% |
| ! | AACAAAGAAAACACGTTTAT+GGG | + | chr8.2:6718455-6718474 | MS.gene24859:CDS | 25.0% |
| ! | ACCAAAATTTCATCCATTAA+AGG | - | chr8.2:6719152-6719171 | None:intergenic | 25.0% |
| ! | CCAAAATTTCATCCATTAAA+GGG | - | chr8.2:6719151-6719170 | None:intergenic | 25.0% |
| ! | TAAGAATTCACATTAGAGTT+AGG | - | chr8.2:6718915-6718934 | None:intergenic | 25.0% |
| ! | TGCATAATATTTGTGAAATG+AGG | + | chr8.2:6719351-6719370 | MS.gene24859:CDS | 25.0% |
| AAGAAACTTCACAAACTCAA+TGG | + | chr8.2:6718421-6718440 | MS.gene24859:CDS | 30.0% | |
| AGGGAGATTTGAAAGATATT+TGG | + | chr8.2:6719105-6719124 | MS.gene24859:CDS | 30.0% | |
| ATTAGAGTTAGGTGCAATTA+TGG | - | chr8.2:6718904-6718923 | None:intergenic | 30.0% | |
| CAACAAAGAAAACACGTTTA+TGG | + | chr8.2:6718454-6718473 | MS.gene24859:CDS | 30.0% | |
| GGGAGATTTGAAAGATATTT+GGG | + | chr8.2:6719106-6719125 | MS.gene24859:CDS | 30.0% | |
| TGTTTGCTCTGCAATAAAAA+CGG | + | chr8.2:6718758-6718777 | MS.gene24859:CDS | 30.0% | |
| TTAGAGTTAGGTGCAATTAT+GGG | - | chr8.2:6718903-6718922 | None:intergenic | 30.0% | |
| TTATGCCAAAGTTCATTCTA+TGG | + | chr8.2:6718784-6718803 | MS.gene24859:CDS | 30.0% | |
| TTGGTTAAACAAGAGTTTGA+AGG | + | chr8.2:6718828-6718847 | MS.gene24859:CDS | 30.0% | |
| TTTACATTGGGTTCTATTTC+TGG | - | chr8.2:6718378-6718397 | None:intergenic | 30.0% | |
| ! | ACGAATTCCAGAAATCTTTT+CGG | + | chr8.2:6718535-6718554 | MS.gene24859:CDS | 30.0% |
| ! | CATAAACGTGTTTTCTTTGT+TGG | - | chr8.2:6718456-6718475 | None:intergenic | 30.0% |
| ! | CTTTTCCTTGTGTTTACATT+GGG | - | chr8.2:6718390-6718409 | None:intergenic | 30.0% |
| ! | TCTTACTCTTTTACTGTTCA+GGG | + | chr8.2:6718975-6718994 | MS.gene24859:CDS | 30.0% |
| ! | TCTTTTCCTTGTGTTTACAT+TGG | - | chr8.2:6718391-6718410 | None:intergenic | 30.0% |
| ! | TTACATTGGGTTCTATTTCT+GGG | - | chr8.2:6718377-6718396 | None:intergenic | 30.0% |
| ! | TTCTTACTCTTTTACTGTTC+AGG | + | chr8.2:6718974-6718993 | MS.gene24859:CDS | 30.0% |
| !! | CCCTTTAATGGATGAAATTT+TGG | + | chr8.2:6719148-6719167 | MS.gene24859:CDS | 30.0% |
| !! | CTTTCTGGAATATCAAATGT+TGG | + | chr8.2:6718852-6718871 | MS.gene24859:CDS | 30.0% |
| !! | TTGAAAGATATTTGGGTTGT+TGG | + | chr8.2:6719113-6719132 | MS.gene24859:CDS | 30.0% |
| !!! | ACTTTTTGATGATGAGATGA+TGG | + | chr8.2:6719406-6719425 | MS.gene24859:CDS | 30.0% |
| AAATTCTGGGTACCCTTTAA+TGG | + | chr8.2:6719136-6719155 | MS.gene24859:CDS | 35.0% | |
| AGAAAGTTGAGGATATTCAG+AGG | + | chr8.2:6719219-6719238 | MS.gene24859:CDS | 35.0% | |
| ATGCACGTAAGAATCTTACT+TGG | + | chr8.2:6719177-6719196 | MS.gene24859:CDS | 35.0% | |
| CAACAAGCACCTAAAATGTT+AGG | - | chr8.2:6719326-6719345 | None:intergenic | 35.0% | |
| GAAAGTTGAGGATATTCAGA+GGG | + | chr8.2:6719220-6719239 | MS.gene24859:CDS | 35.0% | |
| GTAAGATTCTTACGTGCATA+AGG | - | chr8.2:6719176-6719195 | None:intergenic | 35.0% | |
| TAGAACCCAATGTAAACACA+AGG | + | chr8.2:6718382-6718401 | MS.gene24859:CDS | 35.0% | |
| TCAATAAAAGACACACTCAG+AGG | + | chr8.2:6718940-6718959 | MS.gene24859:CDS | 35.0% | |
| TGAAATGAGGAATGAGAAGA+TGG | + | chr8.2:6719364-6719383 | MS.gene24859:CDS | 35.0% | |
| TGAACATCTAGATTTGGAGA+TGG | - | chr8.2:6718342-6718361 | None:intergenic | 35.0% | |
| TTCTCTGCATATAAACTCGA+AGG | - | chr8.2:6718574-6718593 | None:intergenic | 35.0% | |
| TTTGTGAAGTTTCTTCACAG+TGG | - | chr8.2:6718416-6718435 | None:intergenic | 35.0% | |
| ! | ATTTTCACCAACGTGTGTAT+TGG | + | chr8.2:6719017-6719036 | MS.gene24859:CDS | 35.0% |
| ! | GAAAACACGTTTATGGGTTA+AGG | + | chr8.2:6718461-6718480 | MS.gene24859:CDS | 35.0% |
| ! | GAGGATTTGCCTAACATTTT+AGG | + | chr8.2:6719314-6719333 | MS.gene24859:CDS | 35.0% |
| ! | TCTGGAATATCAAATGTTGG+TGG | + | chr8.2:6718855-6718874 | MS.gene24859:CDS | 35.0% |
| !! | ATAAAAGAGTATTGCCAGCA+CGG | - | chr8.2:6719505-6719524 | None:intergenic | 35.0% |
| !! | ATTTGGGTTGTTGGAAATTC+TGG | + | chr8.2:6719122-6719141 | MS.gene24859:CDS | 35.0% |
| !! | GTTTCAGAACGATTTGGTTT+GGG | + | chr8.2:6718705-6718724 | MS.gene24859:CDS | 35.0% |
| !! | TGAACAGGTTTTCGAGAAAT+CGG | + | chr8.2:6719061-6719080 | MS.gene24859:CDS | 35.0% |
| !! | TGTTTCAGAACGATTTGGTT+TGG | + | chr8.2:6718704-6718723 | MS.gene24859:CDS | 35.0% |
| !! | TTTGGGTTGTTGGAAATTCT+GGG | + | chr8.2:6719123-6719142 | MS.gene24859:CDS | 35.0% |
| AATTCGTCATCCGGAAAATC+AGG | - | chr8.2:6718522-6718541 | None:intergenic | 40.0% | |
| ACATAGTTCCCACCAGTTAT+TGG | - | chr8.2:6718493-6718512 | None:intergenic | 40.0% | |
| ATCTAGATTTGGAGATGGAG+TGG | - | chr8.2:6718337-6718356 | None:intergenic | 40.0% | |
| ATGAGAAGATGGATCCTCAA+TGG | + | chr8.2:6719375-6719394 | MS.gene24859:CDS | 40.0% | |
| ATTCGTCATCCGGAAAATCA+GGG | - | chr8.2:6718521-6718540 | None:intergenic | 40.0% | |
| CAAGAGTTTGAAGGTCTTTC+TGG | + | chr8.2:6718837-6718856 | MS.gene24859:CDS | 40.0% | |
| CGCGTTTAATGAGAAAGTTG+AGG | + | chr8.2:6719208-6719227 | MS.gene24859:CDS | 40.0% | |
| CTGTTCATCAGAATAAGAGC+CGG | - | chr8.2:6719048-6719067 | None:intergenic | 40.0% | |
| TAGAACGAGTTTGTGACATG+TGG | - | chr8.2:6718736-6718755 | None:intergenic | 40.0% | |
| TCTGGCCATAGAATGAACTT+TGG | - | chr8.2:6718792-6718811 | None:intergenic | 40.0% | |
| TGCTCATCCGAAAAGATTTC+TGG | - | chr8.2:6718545-6718564 | None:intergenic | 40.0% | |
| TGTTCATCAGAATAAGAGCC+GGG | - | chr8.2:6719047-6719066 | None:intergenic | 40.0% | |
| TGTTGATGCTGTTCAAGCTA+GGG | + | chr8.2:6719448-6719467 | MS.gene24859:CDS | 40.0% | |
| TTAAGGACCGTTCCAATAAC+TGG | + | chr8.2:6718478-6718497 | MS.gene24859:CDS | 40.0% | |
| TTGCTAAAGATGCATTTGCG+AGG | + | chr8.2:6719243-6719262 | MS.gene24859:CDS | 40.0% | |
| ! | AGGCTTGTTTCAGAACGATT+TGG | + | chr8.2:6718699-6718718 | MS.gene24859:CDS | 40.0% |
| !! | CGTTCTGAAACAAGCCTATA+AGG | - | chr8.2:6718696-6718715 | None:intergenic | 40.0% |
| !! | GATTTCTGGAATTCGTCATC+CGG | - | chr8.2:6718531-6718550 | None:intergenic | 40.0% |
| AAGCCTATAAGGATCACCTG+TGG | - | chr8.2:6718685-6718704 | None:intergenic | 45.0% | |
| AGGGTGTGGTTGAGTCTAAA+GGG | + | chr8.2:6718994-6719013 | MS.gene24859:CDS | 45.0% | |
| CGGCTCTTATTCTGATGAAC+AGG | + | chr8.2:6719046-6719065 | MS.gene24859:CDS | 45.0% | |
| CTGTTGATGCTGTTCAAGCT+AGG | + | chr8.2:6719447-6719466 | MS.gene24859:CDS | 45.0% | |
| GAGGACAGAGGTGAAAATTG+AGG | + | chr8.2:6719295-6719314 | MS.gene24859:CDS | 45.0% | |
| GTTCCCACCAGTTATTGGAA+CGG | - | chr8.2:6718488-6718507 | None:intergenic | 45.0% | |
| TGTATTTGGAGACTTGCCAC+AGG | + | chr8.2:6718666-6718685 | MS.gene24859:CDS | 45.0% | |
| TTGCCACAGGTGATCCTTAT+AGG | + | chr8.2:6718679-6718698 | MS.gene24859:CDS | 45.0% | |
| ! | ATGTAGCCACCCTGATTTTC+CGG | + | chr8.2:6718509-6718528 | MS.gene24859:CDS | 45.0% |
| ! | CTCTTTTACTGTTCAGGGTG+TGG | + | chr8.2:6718980-6718999 | MS.gene24859:CDS | 45.0% |
| ! | GATGAGATGATGGCTGAGAA+TGG | + | chr8.2:6719416-6719435 | MS.gene24859:CDS | 45.0% |
| ! | TCACCAACGTGTGTATTGGT+TGG | + | chr8.2:6719021-6719040 | MS.gene24859:CDS | 45.0% |
| AGCGAGTGGCAGCTTGTATT+TGG | + | chr8.2:6718652-6718671 | MS.gene24859:CDS | 50.0% | |
| AGGACCGTTCCAATAACTGG+TGG | + | chr8.2:6718481-6718500 | MS.gene24859:CDS | 50.0% | |
| CAGGGTGTGGTTGAGTCTAA+AGG | + | chr8.2:6718993-6719012 | MS.gene24859:CDS | 50.0% | |
| CATTTGCGAGGCTGAAAGGA+AGG | + | chr8.2:6719255-6719274 | MS.gene24859:CDS | 50.0% | |
| CTCTGTCCTCTTCTGCAAAC+AGG | - | chr8.2:6719285-6719304 | None:intergenic | 50.0% | |
| CTGTTTGCAGAAGAGGACAG+AGG | + | chr8.2:6719283-6719302 | MS.gene24859:CDS | 50.0% | |
| GATGCATTTGCGAGGCTGAA+AGG | + | chr8.2:6719251-6719270 | MS.gene24859:CDS | 50.0% | |
| GCTCATGATCTGTTGCATCG+TGG | + | chr8.2:6719479-6719498 | MS.gene24859:CDS | 50.0% | |
| GGACCGTTCCAATAACTGGT+GGG | + | chr8.2:6718482-6718501 | MS.gene24859:CDS | 50.0% | |
| ! | GCGGAGCATGGTGTTTTTCT+TGG | - | chr8.2:6718613-6718632 | None:intergenic | 50.0% |
| !! | AACGTGTGTATTGGTTGGCC+CGG | + | chr8.2:6719026-6719045 | MS.gene24859:CDS | 50.0% |
| CGTCATCCGGAAAATCAGGG+TGG | - | chr8.2:6718518-6718537 | None:intergenic | 55.0% | |
| GGGCCAACCAATACACACGT+TGG | - | chr8.2:6719027-6719046 | None:intergenic | 55.0% | |
| GGTGGTCCTGTTTGCAGAAG+AGG | + | chr8.2:6719276-6719295 | MS.gene24859:CDS | 55.0% | |
| TTGCGAGGCTGAAAGGAAGG+TGG | + | chr8.2:6719258-6719277 | MS.gene24859:CDS | 55.0% | |
| AGGAACAGCATCGCGGAGCA+TGG | - | chr8.2:6718625-6718644 | None:intergenic | 60.0% | |
| TACAAGCTGCCACTCGCTGC+CGG | - | chr8.2:6718650-6718669 | None:intergenic | 60.0% | |
| TCCGCGATGCTGTTCCTCTC+CGG | + | chr8.2:6718628-6718647 | MS.gene24859:CDS | 60.0% | |
| CTGTTGCATCGTGGCCGTGC+TGG | + | chr8.2:6719488-6719507 | MS.gene24859:CDS | 65.0% | |
| GCCGGAGAGGAACAGCATCG+CGG | - | chr8.2:6718632-6718651 | None:intergenic | 65.0% | |
| TGTTCCTCTCCGGCAGCGAG+TGG | + | chr8.2:6718638-6718657 | MS.gene24859:CDS | 65.0% | |
| GCTGCCACTCGCTGCCGGAG+AGG | - | chr8.2:6718645-6718664 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6718321 | 6719526 | 6718321 | ID=MS.gene24859 |
| chr8.2 | mRNA | 6718321 | 6719526 | 6718321 | ID=MS.gene24859.t1;Parent=MS.gene24859 |
| chr8.2 | exon | 6718321 | 6719526 | 6718321 | ID=MS.gene24859.t1.exon1;Parent=MS.gene24859.t1 |
| chr8.2 | CDS | 6718321 | 6719526 | 6718321 | ID=cds.MS.gene24859.t1;Parent=MS.gene24859.t1 |
| Gene Sequence |
| Protein sequence |
