Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051840.t1 | XP_004507965.1 | 64.9 | 482 | 87 | 2 | 1 | 401 | 1 | 481 | 9.30E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051840.t1 | Q94K49 | 29.5 | 315 | 188 | 9 | 59 | 347 | 43 | 349 | 6.6e-32 | 139.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051840.t1 | A0A1S2YPM5 | 64.9 | 482 | 87 | 2 | 1 | 401 | 1 | 481 | 6.7e-179 | 636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051837 | MS.gene051840 | 0.821159 | 4.68E-53 | -1.69E-46 |
| MS.gene051840 | MS.gene24856 | 0.817607 | 3.02E-52 | -1.69E-46 |
| MS.gene051840 | MS.gene24859 | 0.915351 | 6.53E-85 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051840.t1 | AT5G12010 | 62.921 | 356 | 130 | 2 | 47 | 401 | 148 | 502 | 3.54e-175 | 498 |
| MS.gene051840.t1 | AT4G29780 | 63.173 | 353 | 128 | 2 | 50 | 401 | 189 | 540 | 1.44e-170 | 488 |
| MS.gene051840.t1 | AT3G63270 | 29.524 | 315 | 188 | 9 | 59 | 347 | 43 | 349 | 2.08e-36 | 137 |
| MS.gene051840.t1 | AT3G55350 | 27.190 | 331 | 199 | 10 | 56 | 358 | 50 | 366 | 2.30e-35 | 134 |
| MS.gene051840.t1 | AT3G19120 | 26.774 | 310 | 188 | 8 | 71 | 359 | 114 | 405 | 7.17e-25 | 106 |
| MS.gene051840.t1 | AT1G72275 | 24.742 | 291 | 152 | 11 | 78 | 347 | 101 | 345 | 1.92e-13 | 72.0 |
| MS.gene051840.t1 | AT1G72275 | 24.742 | 291 | 152 | 11 | 78 | 347 | 101 | 345 | 2.49e-13 | 71.6 |
| MS.gene051840.t1 | AT5G41980 | 21.493 | 335 | 230 | 10 | 45 | 373 | 16 | 323 | 9.03e-12 | 66.6 |
Find 93 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGGTTGTTGGAAATTT+TGG | 0.034491 | 8.2:+6794492 | MS.gene051840:CDS |
| CAAGAGTTTGAAGGCCTTTC+TGG | 0.047581 | 8.2:+6794207 | MS.gene051840:CDS |
| TTTACATTGGGTTCTATTTC+TGG | 0.054773 | 8.2:-6793745 | None:intergenic |
| CCCTTTAATGGATGAAATTT+TGG | 0.084310 | 8.2:+6794518 | MS.gene051840:CDS |
| TGCTCATCCGAAAAGATTTC+TGG | 0.137677 | 8.2:-6793912 | None:intergenic |
| AGGGAGATTTGAAAGATATT+TGG | 0.180387 | 8.2:+6794475 | MS.gene051840:CDS |
| ATTAGAGTTAGGTGCAATTA+TGG | 0.208475 | 8.2:-6794271 | None:intergenic |
| CAACAAAGAAAACACGTTTA+TGG | 0.213487 | 8.2:+6793824 | MS.gene051840:CDS |
| AGAAACAAACACATGGTTAT+TGG | 0.217554 | 8.2:+6793679 | None:intergenic |
| TTGCCACAGGTGATCCTTAT+AGG | 0.241673 | 8.2:+6794049 | MS.gene051840:CDS |
| ACCAAAATTTCATCCATTAA+AGG | 0.250185 | 8.2:-6794519 | None:intergenic |
| ACATAGTTCCCACCAGTTAT+TGG | 0.269078 | 8.2:-6793860 | None:intergenic |
| AGCGAGTGGCAGCTTGTATT+TGG | 0.276196 | 8.2:+6794022 | MS.gene051840:CDS |
| AACAAAGAAAACACGTTTAT+GGG | 0.283594 | 8.2:+6793825 | MS.gene051840:CDS |
| AGATGAAAATAACATGAAAT+TGG | 0.297534 | 8.2:+6794179 | MS.gene051840:CDS |
| GGGAGATTTGAAAGATATTT+GGG | 0.307574 | 8.2:+6794476 | MS.gene051840:CDS |
| CGTTCTGAAACAAGCCTATA+AGG | 0.319992 | 8.2:-6794063 | None:intergenic |
| TTATGCCAAAGTTCATTCTA+TGG | 0.323633 | 8.2:+6794154 | MS.gene051840:CDS |
| TTGAAAGATATTTGGGTTGT+TGG | 0.335622 | 8.2:+6794483 | MS.gene051840:CDS |
| TGTTTCAGAACGATTTGGTT+TGG | 0.338994 | 8.2:+6794074 | MS.gene051840:CDS |
| GAAAACACGTTTATGGGTTA+AGG | 0.348667 | 8.2:+6793831 | MS.gene051840:CDS |
| TTACATTGGGTTCTATTTCT+GGG | 0.353773 | 8.2:-6793744 | None:intergenic |
| AATTCGTCATCCGGAAAATC+AGG | 0.356985 | 8.2:-6793889 | None:intergenic |
| AAAGAATGAACATCTAGATT+TGG | 0.358315 | 8.2:-6793715 | None:intergenic |
| TAAGAATTCACATTAGAGTT+AGG | 0.361342 | 8.2:-6794282 | None:intergenic |
| GTTTCAGAACGATTTGGTTT+GGG | 0.363045 | 8.2:+6794075 | MS.gene051840:CDS |
| CCAAAATTTCATCCATTAAA+GGG | 0.367390 | 8.2:-6794518 | None:intergenic |
| GAAACAAACACATGGTTATT+GGG | 0.369459 | 8.2:+6793680 | None:intergenic |
| AGGCTTGTTTCAGAACGATT+TGG | 0.388217 | 8.2:+6794069 | MS.gene051840:CDS |
| CGGTTCTTATTCTGATGAAC+AGG | 0.393438 | 8.2:+6794416 | MS.gene051840:CDS |
| TTAAGGACCGTTCCAATAAC+TGG | 0.402448 | 8.2:+6793848 | MS.gene051840:CDS |
| CTCTGTCCTCTTCTGCAAAC+AGG | 0.406978 | 8.2:-6794652 | None:intergenic |
| TGCATAATATTTGTGAAATG+AGG | 0.413774 | 8.2:+6794721 | MS.gene051840:CDS |
| TTAGAGTTAGGTGCAATTAT+GGG | 0.423648 | 8.2:-6794270 | None:intergenic |
| AAAGACACACTCAGAGGAAC+AGG | 0.430368 | 8.2:+6794316 | MS.gene051840:CDS |
| GTAAGATTCTTACGTGCATA+AGG | 0.447259 | 8.2:-6794543 | None:intergenic |
| CAGGGTGTGGTTGAGTCTAA+AGG | 0.454269 | 8.2:+6794363 | MS.gene051840:CDS |
| CTGTTGCATCGTGGCCGTGC+TGG | 0.455627 | 8.2:+6794858 | MS.gene051840:CDS |
| TTTGTTTAAGAGAATTATGA+AGG | 0.459044 | 8.2:+6794455 | MS.gene051840:CDS |
| TTGGTTAAACAAGAGTTTGA+AGG | 0.460052 | 8.2:+6794198 | MS.gene051840:CDS |
| AGGGTGTGGTTGAGTCTAAA+GGG | 0.470231 | 8.2:+6794364 | MS.gene051840:CDS |
| CTGTTCATCAGAATAAGAAC+CGG | 0.471708 | 8.2:-6794415 | None:intergenic |
| TACAAGCTGCCACTCGCTGC+CGG | 0.485706 | 8.2:-6794017 | None:intergenic |
| CTGTTGATGCTGTACAAGCT+AGG | 0.485939 | 8.2:+6794817 | MS.gene051840:CDS |
| GATTTCTGGAATTCGTCATC+CGG | 0.490601 | 8.2:-6793898 | None:intergenic |
| CAACAAGCACCTAAAATGTT+AGG | 0.491038 | 8.2:-6794693 | None:intergenic |
| GGTGGTCCTGTTTGCAGAAG+AGG | 0.491132 | 8.2:+6794646 | MS.gene051840:CDS |
| ATGCACGTAAGAATCTTACT+TGG | 0.491157 | 8.2:+6794547 | MS.gene051840:CDS |
| GAGGACAGAGGTGAAAATTG+AGG | 0.495121 | 8.2:+6794665 | MS.gene051840:CDS |
| AAGAAACTTCACAAACTCAA+TGG | 0.501636 | 8.2:+6793791 | MS.gene051840:CDS |
| ATGAGAAGATGGATCCTCAA+TGG | 0.515817 | 8.2:+6794745 | MS.gene051840:CDS |
| TCTGGCCATAGAATGAACTT+TGG | 0.519251 | 8.2:-6794159 | None:intergenic |
| AACGTGTGTATTGGTTGGCC+CGG | 0.533638 | 8.2:+6794396 | MS.gene051840:CDS |
| AGAAAGTTGAGGATATTCAG+AGG | 0.534860 | 8.2:+6794589 | MS.gene051840:CDS |
| TCACCAACGTGTGTATTGGT+TGG | 0.534897 | 8.2:+6794391 | MS.gene051840:CDS |
| TGAAATGAGGAATGAGAAGA+TGG | 0.537936 | 8.2:+6794734 | MS.gene051840:CDS |
| TCTGGAATATCAAATGTTGG+TGG | 0.538854 | 8.2:+6794225 | MS.gene051840:CDS |
| GATGCATTTGCGAGGCTGAA+AGG | 0.540087 | 8.2:+6794621 | MS.gene051840:CDS |
| TTCTCTGCATATAAACTCGA+AGG | 0.548386 | 8.2:-6793941 | None:intergenic |
| ATCTAGATTTGGAGATGGAG+TGG | 0.548743 | 8.2:-6793704 | None:intergenic |
| AAAAGTTTAAAATTCCATTG+AGG | 0.551481 | 8.2:-6794759 | None:intergenic |
| TGTTGATGCTGTACAAGCTA+GGG | 0.552086 | 8.2:+6794818 | MS.gene051840:CDS |
| AGGAACAGCATCGCGGAGCA+TGG | 0.552544 | 8.2:-6793992 | None:intergenic |
| TCCGCGATGCTGTTCCTCTC+CGG | 0.557407 | 8.2:+6793998 | MS.gene051840:CDS |
| CTTTCTGGAATATCAAATGT+TGG | 0.560236 | 8.2:+6794222 | MS.gene051840:CDS |
| TGTTCCTCTCCGGCAGCGAG+TGG | 0.563934 | 8.2:+6794008 | MS.gene051840:CDS |
| CAACATTTGATATTCCAGAA+AGG | 0.577759 | 8.2:-6794221 | None:intergenic |
| CATTTGCGAGGCTGAAAGGA+AGG | 0.585427 | 8.2:+6794625 | MS.gene051840:CDS |
| TGAACATCTAGATTTGGAGA+TGG | 0.585549 | 8.2:-6793709 | None:intergenic |
| GAAAGTTGAGGATATTCAGA+GGG | 0.587529 | 8.2:+6794590 | MS.gene051840:CDS |
| TTGTTTAAGAGAATTATGAA+GGG | 0.593636 | 8.2:+6794456 | MS.gene051840:CDS |
| GATGAGATGATGGCTGAGAA+TGG | 0.594397 | 8.2:+6794786 | MS.gene051840:CDS |
| GCTGCCACTCGCTGCCGGAG+AGG | 0.599161 | 8.2:-6794012 | None:intergenic |
| TGTATTTGGAGACTTGCCAC+AGG | 0.599632 | 8.2:+6794036 | MS.gene051840:CDS |
| ACAAAAGAGTATTGCCAGCA+CGG | 0.603449 | 8.2:-6794872 | None:intergenic |
| ATTCGTCATCCGGAAAATCA+GGG | 0.620213 | 8.2:-6793888 | None:intergenic |
| TAGAACGAGTTTGTGACATG+TGG | 0.627672 | 8.2:-6794103 | None:intergenic |
| TGTTCATCAGAATAAGAACC+GGG | 0.627846 | 8.2:-6794414 | None:intergenic |
| AGGACCGTTCCAATAACTGG+TGG | 0.631217 | 8.2:+6793851 | MS.gene051840:CDS |
| TTTGTGAAGTTTCTTCACAG+TGG | 0.635254 | 8.2:-6793783 | None:intergenic |
| CGCGTTTAATGAGAAAGTTG+AGG | 0.639049 | 8.2:+6794578 | MS.gene051840:CDS |
| GTTCCCACCAGTTATTGGAA+CGG | 0.646694 | 8.2:-6793855 | None:intergenic |
| GGACCGTTCCAATAACTGGT+GGG | 0.667948 | 8.2:+6793852 | MS.gene051840:CDS |
| TTGCTAAAGATGCATTTGCG+AGG | 0.673268 | 8.2:+6794613 | MS.gene051840:CDS |
| TAGAACCCAATGTAAACACA+AGG | 0.675809 | 8.2:+6793752 | MS.gene051840:CDS |
| TTGCGAGGCTGAAAGGAAGG+TGG | 0.678195 | 8.2:+6794628 | MS.gene051840:CDS |
| GGGCCAACCAATACACACGT+TGG | 0.691055 | 8.2:-6794394 | None:intergenic |
| GCCGGAGAGGAACAGCATCG+CGG | 0.701371 | 8.2:-6793999 | None:intergenic |
| TCAATAAAAGACACACTCAG+AGG | 0.710570 | 8.2:+6794310 | MS.gene051840:CDS |
| CTGTTTGCAGAAGAGGACAG+AGG | 0.725702 | 8.2:+6794653 | MS.gene051840:CDS |
| GCTCATGATCTGTTGCATCG+TGG | 0.741199 | 8.2:+6794849 | MS.gene051840:CDS |
| CGTCATCCGGAAAATCAGGG+TGG | 0.743708 | 8.2:-6793885 | None:intergenic |
| AAGCCTATAAGGATCACCTG+TGG | 0.743894 | 8.2:-6794052 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATGAAAATAACATGAAAT+TGG | + | chr8.2:6794179-6794198 | MS.gene051840:CDS | 20.0% |
| !! | TTGTTTAAGAGAATTATGAA+GGG | + | chr8.2:6794456-6794475 | MS.gene051840:CDS | 20.0% |
| !! | TTTGTTTAAGAGAATTATGA+AGG | + | chr8.2:6794455-6794474 | MS.gene051840:CDS | 20.0% |
| !!! | AAAAGTTTAAAATTCCATTG+AGG | - | chr8.2:6794762-6794781 | None:intergenic | 20.0% |
| !!! | AATTTCATGTTATTTTCATC+TGG | - | chr8.2:6794180-6794199 | None:intergenic | 20.0% |
| ! | AAAGAATGAACATCTAGATT+TGG | - | chr8.2:6793718-6793737 | None:intergenic | 25.0% |
| ! | AACAAAGAAAACACGTTTAT+GGG | + | chr8.2:6793825-6793844 | MS.gene051840:CDS | 25.0% |
| ! | ACCAAAATTTCATCCATTAA+AGG | - | chr8.2:6794522-6794541 | None:intergenic | 25.0% |
| ! | CCAAAATTTCATCCATTAAA+GGG | - | chr8.2:6794521-6794540 | None:intergenic | 25.0% |
| ! | TAAGAATTCACATTAGAGTT+AGG | - | chr8.2:6794285-6794304 | None:intergenic | 25.0% |
| ! | TGCATAATATTTGTGAAATG+AGG | + | chr8.2:6794721-6794740 | MS.gene051840:CDS | 25.0% |
| AAGAAACTTCACAAACTCAA+TGG | + | chr8.2:6793791-6793810 | MS.gene051840:CDS | 30.0% | |
| AGGGAGATTTGAAAGATATT+TGG | + | chr8.2:6794475-6794494 | MS.gene051840:CDS | 30.0% | |
| ATTAGAGTTAGGTGCAATTA+TGG | - | chr8.2:6794274-6794293 | None:intergenic | 30.0% | |
| CAACAAAGAAAACACGTTTA+TGG | + | chr8.2:6793824-6793843 | MS.gene051840:CDS | 30.0% | |
| CAACATTTGATATTCCAGAA+AGG | - | chr8.2:6794224-6794243 | None:intergenic | 30.0% | |
| GGGAGATTTGAAAGATATTT+GGG | + | chr8.2:6794476-6794495 | MS.gene051840:CDS | 30.0% | |
| TGTTTGCTCTGCAATAAAAA+CGG | + | chr8.2:6794128-6794147 | MS.gene051840:CDS | 30.0% | |
| TTAGAGTTAGGTGCAATTAT+GGG | - | chr8.2:6794273-6794292 | None:intergenic | 30.0% | |
| TTATGCCAAAGTTCATTCTA+TGG | + | chr8.2:6794154-6794173 | MS.gene051840:CDS | 30.0% | |
| TTGGTTAAACAAGAGTTTGA+AGG | + | chr8.2:6794198-6794217 | MS.gene051840:CDS | 30.0% | |
| TTTACATTGGGTTCTATTTC+TGG | - | chr8.2:6793748-6793767 | None:intergenic | 30.0% | |
| ! | ACGAATTCCAGAAATCTTTT+CGG | + | chr8.2:6793905-6793924 | MS.gene051840:CDS | 30.0% |
| ! | CATAAACGTGTTTTCTTTGT+TGG | - | chr8.2:6793826-6793845 | None:intergenic | 30.0% |
| ! | CTTTTCCTTGTGTTTACATT+GGG | - | chr8.2:6793760-6793779 | None:intergenic | 30.0% |
| ! | TCTTACTCTTTTACTGTTCA+GGG | + | chr8.2:6794345-6794364 | MS.gene051840:CDS | 30.0% |
| ! | TCTTTTCCTTGTGTTTACAT+TGG | - | chr8.2:6793761-6793780 | None:intergenic | 30.0% |
| ! | TTACATTGGGTTCTATTTCT+GGG | - | chr8.2:6793747-6793766 | None:intergenic | 30.0% |
| ! | TTCTTACTCTTTTACTGTTC+AGG | + | chr8.2:6794344-6794363 | MS.gene051840:CDS | 30.0% |
| !! | AAATTTTGGGTACCCTTTAA+TGG | + | chr8.2:6794506-6794525 | MS.gene051840:CDS | 30.0% |
| !! | CCCTTTAATGGATGAAATTT+TGG | + | chr8.2:6794518-6794537 | MS.gene051840:CDS | 30.0% |
| !! | CTTTCTGGAATATCAAATGT+TGG | + | chr8.2:6794222-6794241 | MS.gene051840:CDS | 30.0% |
| !! | TTGAAAGATATTTGGGTTGT+TGG | + | chr8.2:6794483-6794502 | MS.gene051840:CDS | 30.0% |
| !!! | ACTTTTTGATGATGAGATGA+TGG | + | chr8.2:6794776-6794795 | MS.gene051840:CDS | 30.0% |
| !!! | ATTTGGGTTGTTGGAAATTT+TGG | + | chr8.2:6794492-6794511 | MS.gene051840:CDS | 30.0% |
| !!! | TTTGGGTTGTTGGAAATTTT+GGG | + | chr8.2:6794493-6794512 | MS.gene051840:CDS | 30.0% |
| AGAAAGTTGAGGATATTCAG+AGG | + | chr8.2:6794589-6794608 | MS.gene051840:CDS | 35.0% | |
| ATGCACGTAAGAATCTTACT+TGG | + | chr8.2:6794547-6794566 | MS.gene051840:CDS | 35.0% | |
| CAACAAGCACCTAAAATGTT+AGG | - | chr8.2:6794696-6794715 | None:intergenic | 35.0% | |
| CTGTTCATCAGAATAAGAAC+CGG | - | chr8.2:6794418-6794437 | None:intergenic | 35.0% | |
| GAAAGTTGAGGATATTCAGA+GGG | + | chr8.2:6794590-6794609 | MS.gene051840:CDS | 35.0% | |
| GTAAGATTCTTACGTGCATA+AGG | - | chr8.2:6794546-6794565 | None:intergenic | 35.0% | |
| TAGAACCCAATGTAAACACA+AGG | + | chr8.2:6793752-6793771 | MS.gene051840:CDS | 35.0% | |
| TCAATAAAAGACACACTCAG+AGG | + | chr8.2:6794310-6794329 | MS.gene051840:CDS | 35.0% | |
| TGAAATGAGGAATGAGAAGA+TGG | + | chr8.2:6794734-6794753 | MS.gene051840:CDS | 35.0% | |
| TGAACATCTAGATTTGGAGA+TGG | - | chr8.2:6793712-6793731 | None:intergenic | 35.0% | |
| TGTTCATCAGAATAAGAACC+GGG | - | chr8.2:6794417-6794436 | None:intergenic | 35.0% | |
| TTCTCTGCATATAAACTCGA+AGG | - | chr8.2:6793944-6793963 | None:intergenic | 35.0% | |
| TTTGTGAAGTTTCTTCACAG+TGG | - | chr8.2:6793786-6793805 | None:intergenic | 35.0% | |
| ! | ATTTTCACCAACGTGTGTAT+TGG | + | chr8.2:6794387-6794406 | MS.gene051840:CDS | 35.0% |
| ! | GAAAACACGTTTATGGGTTA+AGG | + | chr8.2:6793831-6793850 | MS.gene051840:CDS | 35.0% |
| ! | GAGGATTTGCCTAACATTTT+AGG | + | chr8.2:6794684-6794703 | MS.gene051840:CDS | 35.0% |
| ! | TCTGGAATATCAAATGTTGG+TGG | + | chr8.2:6794225-6794244 | MS.gene051840:CDS | 35.0% |
| !! | GTTTCAGAACGATTTGGTTT+GGG | + | chr8.2:6794075-6794094 | MS.gene051840:CDS | 35.0% |
| !! | TGAACAGGTTTTCGAGAAAT+CGG | + | chr8.2:6794431-6794450 | MS.gene051840:CDS | 35.0% |
| !! | TGTTTCAGAACGATTTGGTT+TGG | + | chr8.2:6794074-6794093 | MS.gene051840:CDS | 35.0% |
| AATTCGTCATCCGGAAAATC+AGG | - | chr8.2:6793892-6793911 | None:intergenic | 40.0% | |
| ACATAGTTCCCACCAGTTAT+TGG | - | chr8.2:6793863-6793882 | None:intergenic | 40.0% | |
| ATCTAGATTTGGAGATGGAG+TGG | - | chr8.2:6793707-6793726 | None:intergenic | 40.0% | |
| ATGAGAAGATGGATCCTCAA+TGG | + | chr8.2:6794745-6794764 | MS.gene051840:CDS | 40.0% | |
| ATTCGTCATCCGGAAAATCA+GGG | - | chr8.2:6793891-6793910 | None:intergenic | 40.0% | |
| CGCGTTTAATGAGAAAGTTG+AGG | + | chr8.2:6794578-6794597 | MS.gene051840:CDS | 40.0% | |
| CGGTTCTTATTCTGATGAAC+AGG | + | chr8.2:6794416-6794435 | MS.gene051840:CDS | 40.0% | |
| TAGAACGAGTTTGTGACATG+TGG | - | chr8.2:6794106-6794125 | None:intergenic | 40.0% | |
| TCTGGCCATAGAATGAACTT+TGG | - | chr8.2:6794162-6794181 | None:intergenic | 40.0% | |
| TGCTCATCCGAAAAGATTTC+TGG | - | chr8.2:6793915-6793934 | None:intergenic | 40.0% | |
| TGTTGATGCTGTACAAGCTA+GGG | + | chr8.2:6794818-6794837 | MS.gene051840:CDS | 40.0% | |
| TTAAGGACCGTTCCAATAAC+TGG | + | chr8.2:6793848-6793867 | MS.gene051840:CDS | 40.0% | |
| TTGCTAAAGATGCATTTGCG+AGG | + | chr8.2:6794613-6794632 | MS.gene051840:CDS | 40.0% | |
| ! | AGGCTTGTTTCAGAACGATT+TGG | + | chr8.2:6794069-6794088 | MS.gene051840:CDS | 40.0% |
| !! | ACAAAAGAGTATTGCCAGCA+CGG | - | chr8.2:6794875-6794894 | None:intergenic | 40.0% |
| !! | CGTTCTGAAACAAGCCTATA+AGG | - | chr8.2:6794066-6794085 | None:intergenic | 40.0% |
| !! | GATTTCTGGAATTCGTCATC+CGG | - | chr8.2:6793901-6793920 | None:intergenic | 40.0% |
| AAAGACACACTCAGAGGAAC+AGG | + | chr8.2:6794316-6794335 | MS.gene051840:CDS | 45.0% | |
| AAGCCTATAAGGATCACCTG+TGG | - | chr8.2:6794055-6794074 | None:intergenic | 45.0% | |
| AGGGTGTGGTTGAGTCTAAA+GGG | + | chr8.2:6794364-6794383 | MS.gene051840:CDS | 45.0% | |
| CAAGAGTTTGAAGGCCTTTC+TGG | + | chr8.2:6794207-6794226 | MS.gene051840:CDS | 45.0% | |
| CTGTTGATGCTGTACAAGCT+AGG | + | chr8.2:6794817-6794836 | MS.gene051840:CDS | 45.0% | |
| GAGGACAGAGGTGAAAATTG+AGG | + | chr8.2:6794665-6794684 | MS.gene051840:CDS | 45.0% | |
| GTTCCCACCAGTTATTGGAA+CGG | - | chr8.2:6793858-6793877 | None:intergenic | 45.0% | |
| TGTATTTGGAGACTTGCCAC+AGG | + | chr8.2:6794036-6794055 | MS.gene051840:CDS | 45.0% | |
| TTGCCACAGGTGATCCTTAT+AGG | + | chr8.2:6794049-6794068 | MS.gene051840:CDS | 45.0% | |
| ! | ATGTAGCCACCCTGATTTTC+CGG | + | chr8.2:6793879-6793898 | MS.gene051840:CDS | 45.0% |
| ! | CTCTTTTACTGTTCAGGGTG+TGG | + | chr8.2:6794350-6794369 | MS.gene051840:CDS | 45.0% |
| ! | GATGAGATGATGGCTGAGAA+TGG | + | chr8.2:6794786-6794805 | MS.gene051840:CDS | 45.0% |
| ! | TCACCAACGTGTGTATTGGT+TGG | + | chr8.2:6794391-6794410 | MS.gene051840:CDS | 45.0% |
| AGCGAGTGGCAGCTTGTATT+TGG | + | chr8.2:6794022-6794041 | MS.gene051840:CDS | 50.0% | |
| AGGACCGTTCCAATAACTGG+TGG | + | chr8.2:6793851-6793870 | MS.gene051840:CDS | 50.0% | |
| CAGGGTGTGGTTGAGTCTAA+AGG | + | chr8.2:6794363-6794382 | MS.gene051840:CDS | 50.0% | |
| CATTTGCGAGGCTGAAAGGA+AGG | + | chr8.2:6794625-6794644 | MS.gene051840:CDS | 50.0% | |
| CTCTGTCCTCTTCTGCAAAC+AGG | - | chr8.2:6794655-6794674 | None:intergenic | 50.0% | |
| CTGTTTGCAGAAGAGGACAG+AGG | + | chr8.2:6794653-6794672 | MS.gene051840:CDS | 50.0% | |
| GATGCATTTGCGAGGCTGAA+AGG | + | chr8.2:6794621-6794640 | MS.gene051840:CDS | 50.0% | |
| GCTCATGATCTGTTGCATCG+TGG | + | chr8.2:6794849-6794868 | MS.gene051840:CDS | 50.0% | |
| GGACCGTTCCAATAACTGGT+GGG | + | chr8.2:6793852-6793871 | MS.gene051840:CDS | 50.0% | |
| ! | GCGGAGCATGGTGTTTTTCT+TGG | - | chr8.2:6793983-6794002 | None:intergenic | 50.0% |
| !! | AACGTGTGTATTGGTTGGCC+CGG | + | chr8.2:6794396-6794415 | MS.gene051840:CDS | 50.0% |
| CGTCATCCGGAAAATCAGGG+TGG | - | chr8.2:6793888-6793907 | None:intergenic | 55.0% | |
| GGGCCAACCAATACACACGT+TGG | - | chr8.2:6794397-6794416 | None:intergenic | 55.0% | |
| GGTGGTCCTGTTTGCAGAAG+AGG | + | chr8.2:6794646-6794665 | MS.gene051840:CDS | 55.0% | |
| TTGCGAGGCTGAAAGGAAGG+TGG | + | chr8.2:6794628-6794647 | MS.gene051840:CDS | 55.0% | |
| AGGAACAGCATCGCGGAGCA+TGG | - | chr8.2:6793995-6794014 | None:intergenic | 60.0% | |
| TACAAGCTGCCACTCGCTGC+CGG | - | chr8.2:6794020-6794039 | None:intergenic | 60.0% | |
| TCCGCGATGCTGTTCCTCTC+CGG | + | chr8.2:6793998-6794017 | MS.gene051840:CDS | 60.0% | |
| CTGTTGCATCGTGGCCGTGC+TGG | + | chr8.2:6794858-6794877 | MS.gene051840:CDS | 65.0% | |
| GCCGGAGAGGAACAGCATCG+CGG | - | chr8.2:6794002-6794021 | None:intergenic | 65.0% | |
| TGTTCCTCTCCGGCAGCGAG+TGG | + | chr8.2:6794008-6794027 | MS.gene051840:CDS | 65.0% | |
| GCTGCCACTCGCTGCCGGAG+AGG | - | chr8.2:6794015-6794034 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6793691 | 6794896 | 6793691 | ID=MS.gene051840 |
| chr8.2 | mRNA | 6793691 | 6794896 | 6793691 | ID=MS.gene051840.t1;Parent=MS.gene051840 |
| chr8.2 | exon | 6793691 | 6794896 | 6793691 | ID=MS.gene051840.t1.exon1;Parent=MS.gene051840.t1 |
| chr8.2 | CDS | 6793691 | 6794896 | 6793691 | ID=cds.MS.gene051840.t1;Parent=MS.gene051840.t1 |
| Gene Sequence |
| Protein sequence |
