Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25434.t1 | XP_013445755.1 | 99.2 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.00E+00 | 1187.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25434.t1 | O80605 | 69.9 | 602 | 166 | 5 | 5 | 600 | 2 | 594 | 3.0e-238 | 825.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25434.t1 | J7FDE7 | 99.2 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.0e+00 | 1187.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene25434 | 0.808008 | 3.82E-50 | -1.69E-46 |
| MS.gene050894 | MS.gene25434 | 0.827449 | 1.55E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene25434 | 0.844569 | 6.97E-59 | -1.69E-46 |
| MS.gene053143 | MS.gene25434 | 0.825674 | 4.12E-54 | -1.69E-46 |
| MS.gene054585 | MS.gene25434 | 0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene055221 | MS.gene25434 | 0.801011 | 1.10E-48 | -1.69E-46 |
| MS.gene059778 | MS.gene25434 | 0.81289 | 3.38E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25434.t1 | MTR_8g468330 | 99.167 | 600 | 5 | 0 | 1 | 600 | 1 | 600 | 0.0 | 1211 |
| MS.gene25434.t1 | MTR_3g110880 | 44.779 | 565 | 235 | 7 | 40 | 595 | 7 | 503 | 2.44e-149 | 440 |
| MS.gene25434.t1 | MTR_6g033580 | 43.609 | 532 | 212 | 10 | 54 | 565 | 10 | 473 | 8.33e-143 | 424 |
| MS.gene25434.t1 | MTR_1g096910 | 43.007 | 572 | 249 | 13 | 39 | 598 | 19 | 525 | 1.19e-141 | 421 |
| MS.gene25434.t1 | MTR_4g131920 | 43.110 | 508 | 217 | 6 | 61 | 565 | 33 | 471 | 5.09e-135 | 404 |
| MS.gene25434.t1 | MTR_4g131920 | 40.717 | 474 | 209 | 6 | 61 | 531 | 33 | 437 | 8.24e-115 | 350 |
| MS.gene25434.t1 | MTR_5g067470 | 52.991 | 234 | 101 | 3 | 54 | 284 | 28 | 255 | 2.65e-74 | 246 |
| MS.gene25434.t1 | MTR_5g067470 | 50.000 | 206 | 97 | 2 | 360 | 565 | 273 | 472 | 1.71e-56 | 199 |
| MS.gene25434.t1 | MTR_6g043880 | 47.639 | 233 | 115 | 2 | 55 | 285 | 26 | 253 | 3.51e-71 | 238 |
| MS.gene25434.t1 | MTR_6g043880 | 42.683 | 246 | 127 | 5 | 360 | 598 | 270 | 508 | 9.36e-52 | 186 |
| MS.gene25434.t1 | MTR_4g102110 | 29.804 | 255 | 123 | 6 | 69 | 303 | 6 | 224 | 4.43e-25 | 107 |
| MS.gene25434.t1 | MTR_4g102110 | 32.692 | 156 | 80 | 4 | 383 | 517 | 196 | 347 | 3.05e-18 | 87.0 |
| MS.gene25434.t1 | MTR_4g102190 | 42.500 | 120 | 62 | 2 | 111 | 228 | 133 | 247 | 4.20e-21 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25434.t1 | AT2G02860 | 69.657 | 613 | 149 | 7 | 5 | 600 | 2 | 594 | 0.0 | 854 |
| MS.gene25434.t1 | AT2G02860 | 70.306 | 458 | 123 | 4 | 147 | 600 | 16 | 464 | 0.0 | 664 |
| MS.gene25434.t1 | AT1G09960 | 44.700 | 566 | 231 | 10 | 34 | 587 | 5 | 500 | 3.07e-145 | 430 |
| MS.gene25434.t1 | AT1G71890 | 42.935 | 552 | 239 | 12 | 42 | 587 | 16 | 497 | 1.78e-142 | 423 |
| MS.gene25434.t1 | AT1G22710 | 40.840 | 595 | 256 | 11 | 13 | 598 | 5 | 512 | 7.06e-140 | 416 |
| MS.gene25434.t1 | AT5G06170 | 41.856 | 528 | 239 | 6 | 61 | 586 | 30 | 491 | 4.37e-138 | 411 |
| MS.gene25434.t1 | AT1G71880 | 41.373 | 568 | 258 | 7 | 23 | 587 | 3 | 498 | 1.61e-136 | 408 |
| MS.gene25434.t1 | AT1G66570 | 42.533 | 529 | 235 | 7 | 61 | 586 | 29 | 491 | 2.36e-136 | 407 |
| MS.gene25434.t1 | AT2G14670 | 43.289 | 529 | 231 | 7 | 61 | 586 | 30 | 492 | 3.17e-134 | 401 |
| MS.gene25434.t1 | AT5G43610 | 41.316 | 547 | 241 | 8 | 43 | 586 | 23 | 492 | 7.81e-131 | 392 |
| MS.gene25434.t1 | AT1G66570 | 39.446 | 469 | 215 | 7 | 61 | 526 | 29 | 431 | 5.67e-109 | 335 |
| MS.gene25434.t1 | AT1G66570 | 40.265 | 452 | 201 | 7 | 61 | 509 | 29 | 414 | 6.56e-109 | 333 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTTGTGGCCCCATTAC+AGG | 0.181088 | 8.3:+42108497 | MS.gene25434:CDS |
| GATAAATGTACTTCAAAATT+TGG | 0.185829 | 8.3:+42109321 | MS.gene25434:CDS |
| CAAACTTGTAGAACATTTAA+AGG | 0.194823 | 8.3:+42109648 | MS.gene25434:intron |
| GCAGACATTGGATACATATT+AGG | 0.197342 | 8.3:+42109498 | MS.gene25434:CDS |
| ATCAGATTCTGCTCCTTTAT+TGG | 0.203282 | 8.3:+42113117 | MS.gene25434:CDS |
| TTCAACCTTGTGTTGGTATT+TGG | 0.209252 | 8.3:+42109295 | MS.gene25434:CDS |
| TTAACTTGTTGACAAGTTTA+AGG | 0.221760 | 8.3:+42113314 | MS.gene25434:CDS |
| TTATATTTATTCTTGGGTTC+TGG | 0.225572 | 8.3:+42109691 | MS.gene25434:CDS |
| GCTGCTGTTATATTTATTCT+TGG | 0.264086 | 8.3:+42109684 | MS.gene25434:CDS |
| GGTCCATGGGATGCTCTCTT+TGG | 0.288809 | 8.3:+42115238 | MS.gene25434:CDS |
| ACTTCCAAAGTGGTCCCTTT+TGG | 0.289575 | 8.3:-42113614 | None:intergenic |
| GACTCATTTATAACAGATAA+AGG | 0.302396 | 8.3:-42113175 | None:intergenic |
| AGATCATAATGAAAATTTAA+TGG | 0.305128 | 8.3:+42113270 | MS.gene25434:CDS |
| CCTTTATTGGATGAACAAAA+TGG | 0.305588 | 8.3:+42113130 | MS.gene25434:CDS |
| ATGATTATATCCCTTGGTTC+TGG | 0.309802 | 8.3:+42115217 | MS.gene25434:CDS |
| CTGGTTGTGTTTGTTCTGCT+TGG | 0.314119 | 8.3:+42114033 | MS.gene25434:CDS |
| TCGTTTCTTAGATTCTTATA+AGG | 0.314384 | 8.3:-42107775 | None:intergenic |
| TCTTCATTTATTTGGCTTTG+TGG | 0.317021 | 8.3:+42108485 | MS.gene25434:CDS |
| CAGACATTGGATACATATTA+GGG | 0.317808 | 8.3:+42109499 | MS.gene25434:CDS |
| GAACTTCATCAGCAAAATAT+AGG | 0.324119 | 8.3:-42113063 | None:intergenic |
| CAATATTCCAGCATTTGTTT+TGG | 0.325019 | 8.3:+42115267 | MS.gene25434:CDS |
| GGGGCCAGCTAGAGCACTTT+TGG | 0.330003 | 8.3:+42109853 | MS.gene25434:intron |
| GTCGTCTTTGTTTGCATGGC+TGG | 0.331375 | 8.3:+42113919 | MS.gene25434:CDS |
| GCATTATTCTTCGTCGGTAA+TGG | 0.334541 | 8.3:-42107892 | None:intergenic |
| CTGCTGTTATATTTATTCTT+GGG | 0.335722 | 8.3:+42109685 | MS.gene25434:CDS |
| CTGCTGGTGTTCAGTTTGGT+TGG | 0.338510 | 8.3:+42107950 | MS.gene25434:CDS |
| GGGATACAAAAGAGCATTGC+AGG | 0.341769 | 8.3:+42109520 | MS.gene25434:CDS |
| TGATGGGTGCAAGATTAGTA+TGG | 0.342077 | 8.3:+42113881 | MS.gene25434:CDS |
| TGCTGGTGTTCAGTTTGGTT+GGG | 0.348774 | 8.3:+42107951 | MS.gene25434:CDS |
| ATGGCAGTGGGCAACATTCT+AGG | 0.352234 | 8.3:+42110266 | MS.gene25434:CDS |
| TATCCCTTGGTTCTGGTCCA+TGG | 0.360221 | 8.3:+42115224 | MS.gene25434:CDS |
| TCTTCTCACACCTTACATTC+AGG | 0.361681 | 8.3:+42107987 | MS.gene25434:CDS |
| GCAGAGTTGACTGCTGATTC+AGG | 0.375792 | 8.3:+42114262 | MS.gene25434:CDS |
| TGATGCAGACATTGGGAATA+GGG | 0.392489 | 8.3:+42108453 | MS.gene25434:intron |
| TCTAGCAGTTTCAAGTCATC+AGG | 0.393476 | 8.3:+42115346 | MS.gene25434:CDS |
| CCTACCACAAGGCCTGTAAT+GGG | 0.394686 | 8.3:-42108509 | None:intergenic |
| TTGATGCAGACATTGGGAAT+AGG | 0.402286 | 8.3:+42108452 | MS.gene25434:intron |
| GGTGTTAGAGAAGGTGCATT+TGG | 0.403690 | 8.3:+42113653 | MS.gene25434:CDS |
| TTTGATACATTGCGTTGATC+AGG | 0.404726 | 8.3:-42110224 | None:intergenic |
| ATATAACAGCAGCCCTTGTT+CGG | 0.409438 | 8.3:-42109674 | None:intergenic |
| CAAGCTCTATTTGTCAAGAA+AGG | 0.411741 | 8.3:-42112125 | None:intergenic |
| ATCCCTTGGTTCTGGTCCAT+GGG | 0.418535 | 8.3:+42115225 | MS.gene25434:CDS |
| ACTTACCTGCACTGTGTTGT+TGG | 0.425888 | 8.3:-42109727 | None:intergenic |
| ATGACTTGAAACTGCTAGAA+AGG | 0.429364 | 8.3:-42115342 | None:intergenic |
| AAGGAGCAGAATCTGATAAC+TGG | 0.429671 | 8.3:-42113111 | None:intergenic |
| CTTAGTTGCACCGTTGCTGC+TGG | 0.432630 | 8.3:+42107934 | MS.gene25434:CDS |
| AAACTTGTAGAACATTTAAA+GGG | 0.440376 | 8.3:+42109649 | MS.gene25434:intron |
| TCTTGCAATTGTTGCTCCAC+AGG | 0.442753 | 8.3:+42114400 | MS.gene25434:CDS |
| CGAACCAATGTGTAAGTTGA+TGG | 0.442939 | 8.3:+42113864 | MS.gene25434:CDS |
| ACCTACCACAAGGCCTGTAA+TGG | 0.450617 | 8.3:-42108510 | None:intergenic |
| GTTGCTGCTGGTGTTCAGTT+TGG | 0.450766 | 8.3:+42107946 | MS.gene25434:CDS |
| AACTTCATCAGCAAAATATA+GGG | 0.451842 | 8.3:-42113062 | None:intergenic |
| TAATTTAGGTGATATTGATC+GGG | 0.454046 | 8.3:+42109469 | MS.gene25434:intron |
| TTGAAACTGCTAGAAAGGTT+TGG | 0.454502 | 8.3:-42115337 | None:intergenic |
| TATAACAGCAGCCCTTGTTC+GGG | 0.457428 | 8.3:-42109673 | None:intergenic |
| GAAGTAGATCTTTATGATCA+AGG | 0.457898 | 8.3:+42113632 | MS.gene25434:CDS |
| TGAGGCATGTGGCAATCTTA+AGG | 0.459644 | 8.3:+42112151 | MS.gene25434:CDS |
| GCATTCAGTGCTGGTTGTAA+TGG | 0.460583 | 8.3:+42113354 | MS.gene25434:CDS |
| ACCTGCTATGCATTCAGTGC+TGG | 0.463939 | 8.3:+42113345 | MS.gene25434:CDS |
| GTAATTTAGGTGATATTGAT+CGG | 0.464209 | 8.3:+42109468 | MS.gene25434:intron |
| TGGTTGTAATGGCTCTCACT+TGG | 0.466348 | 8.3:+42113365 | MS.gene25434:CDS |
| CCATGGGATGCTCTCTTTGG+TGG | 0.467830 | 8.3:+42115241 | MS.gene25434:CDS |
| CGAGGGATAGAACATGCAAT+TGG | 0.469372 | 8.3:+42113982 | MS.gene25434:CDS |
| GTTTATCATGGGGATCCAAA+AGG | 0.474324 | 8.3:+42113599 | MS.gene25434:CDS |
| AACTCTGCTGTAACAGCAAA+GGG | 0.474853 | 8.3:-42114247 | None:intergenic |
| ATTTAGATGATTATATCCCT+TGG | 0.481464 | 8.3:+42115211 | MS.gene25434:intron |
| CTGTCTACCTGCAGTTGTCA+TGG | 0.481867 | 8.3:+42113534 | MS.gene25434:intron |
| CGTGTTAGGACCTGAATGTA+AGG | 0.483547 | 8.3:-42107997 | None:intergenic |
| GTCGAACTCGTCGGCATCGA+CGG | 0.484624 | 8.3:+42107814 | MS.gene25434:CDS |
| TTTGTTCGATACGGATTGGA+TGG | 0.485266 | 8.3:+42113568 | MS.gene25434:CDS |
| ATGGGAAGAGAAGTTTATCA+TGG | 0.487612 | 8.3:+42113587 | MS.gene25434:CDS |
| CATAATGAAAATTTAATGGA+TGG | 0.488610 | 8.3:+42113274 | MS.gene25434:CDS |
| GGATGGGCCTGGAGCAGTAT+TGG | 0.491457 | 8.3:+42113291 | MS.gene25434:CDS |
| ATGGCTTTATAGGTTGTGCT+TGG | 0.491540 | 8.3:+42113823 | MS.gene25434:intron |
| AGAGATCCTGCTAGAATGAA+TGG | 0.494658 | 8.3:-42109354 | None:intergenic |
| AGCATGAGAGTTTCAATGCT+GGG | 0.498161 | 8.3:+42113245 | MS.gene25434:CDS |
| AAGCTCTATTTGTCAAGAAA+GGG | 0.498756 | 8.3:-42112124 | None:intergenic |
| GCGTCCATCTGTGCTCTAGC+CGG | 0.500700 | 8.3:+42115289 | MS.gene25434:CDS |
| GCTGATTCAGGTGGTGGCCA+AGG | 0.516252 | 8.3:+42114274 | MS.gene25434:CDS |
| GGCAGCATTTCTTGTTGCTG+TGG | 0.519356 | 8.3:+42112172 | MS.gene25434:CDS |
| CCTGCACTGTGTTGTTGGCA+AGG | 0.520122 | 8.3:-42109722 | None:intergenic |
| TGGGATGCTCTCTTTGGTGG+TGG | 0.522974 | 8.3:+42115244 | MS.gene25434:CDS |
| CTATCCCTCGAGTATAATCA+TGG | 0.523520 | 8.3:-42113969 | None:intergenic |
| GAAAATTTAATGGATGGGCC+TGG | 0.525286 | 8.3:+42113280 | MS.gene25434:CDS |
| ACGGCGATGAGCCTCGGCAT+CGG | 0.526213 | 8.3:+42107839 | MS.gene25434:CDS |
| ACGGCGACGGCGATGAGCCT+CGG | 0.526343 | 8.3:+42107833 | MS.gene25434:CDS |
| CATTTAAAGGGACCCGAACA+AGG | 0.526346 | 8.3:+42109661 | MS.gene25434:CDS |
| ATGGACGCCAAAACAAATGC+TGG | 0.527268 | 8.3:-42115274 | None:intergenic |
| CAAGCAGAACAAACACAACC+AGG | 0.532679 | 8.3:-42114032 | None:intergenic |
| ATCCTCGCTTAACTTACCAT+TGG | 0.532882 | 8.3:-42113197 | None:intergenic |
| AGGAATCAAGTATGCTTCCC+TGG | 0.535395 | 8.3:+42114014 | MS.gene25434:CDS |
| TCTGCCAAAAGTGCTCTAGC+TGG | 0.536289 | 8.3:-42109857 | None:intergenic |
| AACGAAGCATTATTCTTCGT+CGG | 0.537348 | 8.3:-42107898 | None:intergenic |
| TTGTTCGATACGGATTGGAT+GGG | 0.538564 | 8.3:+42113569 | MS.gene25434:CDS |
| AAAACTTCACTCACCGCAAG+TGG | 0.538916 | 8.3:-42114060 | None:intergenic |
| TAGAGTTGCAACAATGCCAC+CGG | 0.540131 | 8.3:-42115308 | None:intergenic |
| AAGTTAACCAATACTGCTCC+AGG | 0.544867 | 8.3:-42113298 | None:intergenic |
| AGACGTCCATTCATTCTAGC+AGG | 0.545928 | 8.3:+42109348 | MS.gene25434:CDS |
| CAACACGTCGTCGCAATGGC+GGG | 0.546587 | 8.3:+42107724 | None:intergenic |
| CGTCTGGTGCTAGTGGAAAG+TGG | 0.547536 | 8.3:+42110294 | MS.gene25434:CDS |
| AACATTCTAGGATATTCGTC+TGG | 0.547818 | 8.3:+42110278 | MS.gene25434:CDS |
| TTTATCATGGGGATCCAAAA+GGG | 0.547987 | 8.3:+42113600 | MS.gene25434:CDS |
| ATAATGAAAATTTAATGGAT+GGG | 0.551396 | 8.3:+42113275 | MS.gene25434:CDS |
| TGGGAAGAGAAGTTTATCAT+GGG | 0.553628 | 8.3:+42113588 | MS.gene25434:CDS |
| AAGCATGAGAGTTTCAATGC+TGG | 0.555243 | 8.3:+42113244 | MS.gene25434:CDS |
| GGATATTCGTCTGGTGCTAG+TGG | 0.556399 | 8.3:+42110287 | MS.gene25434:CDS |
| GGTTGTAATGGCTCTCACTT+GGG | 0.562605 | 8.3:+42113366 | MS.gene25434:CDS |
| TCTGTCCATGATTATACTCG+AGG | 0.565758 | 8.3:+42113964 | MS.gene25434:CDS |
| GGATCCAAAAGGGACCACTT+TGG | 0.567204 | 8.3:+42113610 | MS.gene25434:CDS |
| CAACTCTGCTGTAACAGCAA+AGG | 0.569689 | 8.3:-42114248 | None:intergenic |
| TTACAGGTTCAACCTTGTGT+TGG | 0.571947 | 8.3:+42109288 | MS.gene25434:intron |
| ACCAGCACTGAATGCATAGC+AGG | 0.572610 | 8.3:-42113346 | None:intergenic |
| TTGACTGCTGATTCAGGTGG+TGG | 0.581081 | 8.3:+42114268 | MS.gene25434:CDS |
| TATGATCAAGGTGTTAGAGA+AGG | 0.584148 | 8.3:+42113644 | MS.gene25434:CDS |
| GCACCCATCAACTTACACAT+TGG | 0.584425 | 8.3:-42113868 | None:intergenic |
| TCTGTTATAAATGAGTCCAA+TGG | 0.584815 | 8.3:+42113181 | MS.gene25434:CDS |
| GCCACCGGCTAGAGCACAGA+TGG | 0.585393 | 8.3:-42115293 | None:intergenic |
| CATGCAATTGGAGCAAGTGA+AGG | 0.590178 | 8.3:+42113994 | MS.gene25434:CDS |
| TGGCCCCATTACAGGCCTTG+TGG | 0.591978 | 8.3:+42108505 | MS.gene25434:CDS |
| GATGGGTGCAAGATTAGTAT+GGG | 0.593697 | 8.3:+42113882 | MS.gene25434:CDS |
| CTGTCCATGATTATACTCGA+GGG | 0.596081 | 8.3:+42113965 | MS.gene25434:CDS |
| CTCGTCGGCATCGACGGCGA+CGG | 0.596347 | 8.3:+42107820 | MS.gene25434:CDS |
| TGTTTACTTGCAGTAGTAAG+CGG | 0.596694 | 8.3:-42113085 | None:intergenic |
| AAACTGAACACCAGCAGCAA+CGG | 0.601392 | 8.3:-42107944 | None:intergenic |
| ATAAAGATCTACTTCCAAAG+TGG | 0.605985 | 8.3:-42113624 | None:intergenic |
| TCCATCTGTGCTCTAGCCGG+TGG | 0.612635 | 8.3:+42115292 | MS.gene25434:CDS |
| TCTGCTTGGATTTCCACTTG+CGG | 0.613392 | 8.3:+42114047 | MS.gene25434:CDS |
| ATCCCATGGACCAGAACCAA+GGG | 0.616521 | 8.3:-42115227 | None:intergenic |
| CCTTGCCAACAACACAGTGC+AGG | 0.617565 | 8.3:+42109722 | MS.gene25434:CDS |
| CATCCCATGGACCAGAACCA+AGG | 0.629070 | 8.3:-42115228 | None:intergenic |
| CCACCAAAGAGAGCATCCCA+TGG | 0.630045 | 8.3:-42115241 | None:intergenic |
| GCCGCGGAAGTCGAACTCGT+CGG | 0.634440 | 8.3:+42107805 | MS.gene25434:CDS |
| GCATGAGAGTTTCAATGCTG+GGG | 0.638752 | 8.3:+42113246 | MS.gene25434:CDS |
| TTAAGATCGATCCGATGCCG+AGG | 0.646226 | 8.3:-42107850 | None:intergenic |
| TTAGATTCTTATAAGGAACA+CGG | 0.649952 | 8.3:-42107768 | None:intergenic |
| GAACCAATGTGTAAGTTGAT+GGG | 0.650882 | 8.3:+42113865 | MS.gene25434:CDS |
| AACAGCAAAGGGAACACTGT+AGG | 0.652099 | 8.3:-42114236 | None:intergenic |
| GGGAAGAGAAGTTTATCATG+GGG | 0.653043 | 8.3:+42113589 | MS.gene25434:CDS |
| GCCGACGAGTTCGACTTCCG+CGG | 0.659454 | 8.3:-42107806 | None:intergenic |
| ATTTAAAGGGACCCGAACAA+GGG | 0.660883 | 8.3:+42109662 | MS.gene25434:CDS |
| CTACCACAAGGCCTGTAATG+GGG | 0.667284 | 8.3:-42108508 | None:intergenic |
| TCACTCCAAATACCAACACA+AGG | 0.669287 | 8.3:-42109300 | None:intergenic |
| AGCACTGAATGCATAGCAGG+TGG | 0.671343 | 8.3:-42113343 | None:intergenic |
| GACGAGTTCGACTTCCGCGG+CGG | 0.675392 | 8.3:-42107803 | None:intergenic |
| GACAAATAGAGCTTGCTGTG+AGG | 0.676643 | 8.3:+42112133 | MS.gene25434:CDS |
| AAGCAGAACAAACACAACCA+GGG | 0.677109 | 8.3:-42114031 | None:intergenic |
| GTCCAATGGTAAGTTAAGCG+AGG | 0.680050 | 8.3:+42113195 | MS.gene25434:CDS |
| GTTAAGCGAGGATCGCTCTG+AGG | 0.695917 | 8.3:+42113207 | MS.gene25434:CDS |
| GGTAATGGATCTCCGCGCGG+CGG | 0.696957 | 8.3:-42107877 | None:intergenic |
| AAGAAACGATTCTTCCGCCG+CGG | 0.705197 | 8.3:+42107789 | MS.gene25434:CDS |
| AGAGCTTGCTGTGAGGCATG+TGG | 0.720128 | 8.3:+42112140 | MS.gene25434:CDS |
| GTCGGTAATGGATCTCCGCG+CGG | 0.724346 | 8.3:-42107880 | None:intergenic |
| AGACATTGGATACATATTAG+GGG | 0.732708 | 8.3:+42109500 | MS.gene25434:CDS |
| GATCTTAATTCACCGCCGCG+CGG | 0.737072 | 8.3:+42107865 | MS.gene25434:CDS |
| GAGTTGACTGCTGATTCAGG+TGG | 0.739601 | 8.3:+42114265 | MS.gene25434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 42107739 | 42115384 | 42107739 | ID=MS.gene25434 |
| chr8.3 | mRNA | 42107739 | 42115384 | 42107739 | ID=MS.gene25434.t1;Parent=MS.gene25434 |
| chr8.3 | exon | 42107739 | 42108008 | 42107739 | ID=MS.gene25434.t1.exon1;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42107739 | 42108008 | 42107739 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42108461 | 42108526 | 42108461 | ID=MS.gene25434.t1.exon2;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42108461 | 42108526 | 42108461 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42109294 | 42109392 | 42109294 | ID=MS.gene25434.t1.exon3;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42109294 | 42109392 | 42109294 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42109477 | 42109541 | 42109477 | ID=MS.gene25434.t1.exon4;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42109477 | 42109541 | 42109477 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42109659 | 42109743 | 42109659 | ID=MS.gene25434.t1.exon5;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42109659 | 42109743 | 42109659 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42109854 | 42109887 | 42109854 | ID=MS.gene25434.t1.exon6;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42109854 | 42109887 | 42109854 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42110222 | 42110321 | 42110222 | ID=MS.gene25434.t1.exon7;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42110222 | 42110321 | 42110222 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42112118 | 42112193 | 42112118 | ID=MS.gene25434.t1.exon8;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42112118 | 42112193 | 42112118 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42113034 | 42113387 | 42113034 | ID=MS.gene25434.t1.exon9;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42113034 | 42113387 | 42113034 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42113548 | 42113691 | 42113548 | ID=MS.gene25434.t1.exon10;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42113548 | 42113691 | 42113548 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42113835 | 42114068 | 42113835 | ID=MS.gene25434.t1.exon11;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42113835 | 42114068 | 42113835 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42114232 | 42114295 | 42114232 | ID=MS.gene25434.t1.exon12;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42114232 | 42114295 | 42114232 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42114378 | 42114421 | 42114378 | ID=MS.gene25434.t1.exon13;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42114378 | 42114421 | 42114378 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| chr8.3 | exon | 42115217 | 42115384 | 42115217 | ID=MS.gene25434.t1.exon14;Parent=MS.gene25434.t1 |
| chr8.3 | CDS | 42115217 | 42115384 | 42115217 | ID=cds.MS.gene25434.t1;Parent=MS.gene25434.t1 |
| Gene Sequence |
| Protein sequence |
