Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25604.t1 | XP_013445500.1 | 88.2 | 127 | 7 | 1 | 1 | 119 | 1 | 127 | 4.60E-56 | 227.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25604.t1 | Q9T076 | 50.4 | 131 | 53 | 2 | 1 | 119 | 4 | 134 | 1.6e-28 | 127.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25604.t1 | A0A072TQN9 | 88.2 | 127 | 7 | 1 | 1 | 119 | 1 | 127 | 3.3e-56 | 227.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053584 | MS.gene25604 | 0.80576 | 1.14E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene25604 | 0.815026 | 1.14E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene25604 | 0.80926 | 2.07E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene25604 | 0.82599 | 3.47E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25604.t1 | MTR_8g463180 | 86.957 | 138 | 9 | 2 | 1 | 130 | 1 | 137 | 3.26e-80 | 239 |
| MS.gene25604.t1 | MTR_2g079030 | 55.346 | 159 | 49 | 6 | 1 | 138 | 3 | 160 | 5.87e-46 | 156 |
| MS.gene25604.t1 | MTR_2g090580 | 46.154 | 156 | 70 | 3 | 1 | 142 | 4 | 159 | 1.08e-39 | 132 |
| MS.gene25604.t1 | MTR_2g090575 | 50.420 | 119 | 51 | 1 | 7 | 117 | 8 | 126 | 1.42e-38 | 134 |
| MS.gene25604.t1 | MTR_8g086360 | 44.056 | 143 | 64 | 4 | 8 | 140 | 6 | 142 | 1.52e-33 | 116 |
| MS.gene25604.t1 | MTR_4g124280 | 44.805 | 154 | 69 | 4 | 1 | 138 | 2 | 155 | 3.31e-32 | 114 |
| MS.gene25604.t1 | MTR_8g094990 | 44.118 | 136 | 67 | 2 | 1 | 127 | 2 | 137 | 1.20e-31 | 114 |
| MS.gene25604.t1 | MTR_4g078410 | 43.511 | 131 | 61 | 3 | 20 | 142 | 21 | 146 | 1.55e-31 | 111 |
| MS.gene25604.t1 | MTR_8g095013 | 44.262 | 122 | 59 | 2 | 1 | 113 | 2 | 123 | 1.18e-30 | 112 |
| MS.gene25604.t1 | MTR_4g081100 | 43.802 | 121 | 58 | 2 | 7 | 117 | 15 | 135 | 1.44e-30 | 109 |
| MS.gene25604.t1 | MTR_3g105930 | 45.000 | 140 | 59 | 5 | 21 | 142 | 24 | 163 | 3.82e-30 | 107 |
| MS.gene25604.t1 | MTR_3g092170 | 37.989 | 179 | 72 | 3 | 1 | 140 | 2 | 180 | 7.58e-30 | 109 |
| MS.gene25604.t1 | MTR_1g014120 | 42.222 | 135 | 63 | 4 | 8 | 127 | 9 | 143 | 1.22e-29 | 106 |
| MS.gene25604.t1 | MTR_8g095020 | 46.667 | 105 | 45 | 3 | 22 | 117 | 23 | 125 | 2.54e-25 | 98.2 |
| MS.gene25604.t1 | MTR_2g101300 | 36.552 | 145 | 81 | 3 | 3 | 138 | 6 | 148 | 1.72e-24 | 93.2 |
| MS.gene25604.t1 | MTR_2g083250 | 35.625 | 160 | 59 | 5 | 21 | 136 | 23 | 182 | 1.09e-23 | 92.8 |
| MS.gene25604.t1 | MTR_6g022170 | 43.119 | 109 | 49 | 3 | 26 | 123 | 36 | 142 | 3.82e-20 | 81.6 |
| MS.gene25604.t1 | MTR_4g077787 | 35.616 | 146 | 71 | 7 | 5 | 134 | 12 | 150 | 2.57e-19 | 79.7 |
| MS.gene25604.t1 | MTR_4g111640 | 34.932 | 146 | 76 | 5 | 9 | 137 | 12 | 155 | 6.37e-19 | 78.6 |
| MS.gene25604.t1 | MTR_2g025580 | 30.822 | 146 | 88 | 5 | 5 | 140 | 9 | 151 | 1.63e-17 | 74.7 |
| MS.gene25604.t1 | MTR_7g090170 | 37.143 | 140 | 53 | 6 | 21 | 142 | 24 | 146 | 3.15e-17 | 73.6 |
| MS.gene25604.t1 | MTR_5g006040 | 26.619 | 139 | 94 | 1 | 7 | 137 | 9 | 147 | 1.69e-16 | 72.4 |
| MS.gene25604.t1 | MTR_2g088990 | 32.593 | 135 | 75 | 6 | 4 | 125 | 5 | 136 | 6.08e-16 | 72.0 |
| MS.gene25604.t1 | MTR_4g112310 | 35.577 | 104 | 61 | 1 | 40 | 137 | 2 | 105 | 4.40e-15 | 67.4 |
| MS.gene25604.t1 | MTR_3g099570 | 34.815 | 135 | 76 | 4 | 5 | 131 | 8 | 138 | 8.36e-15 | 68.2 |
| MS.gene25604.t1 | MTR_4g114870 | 35.000 | 100 | 55 | 2 | 24 | 113 | 191 | 290 | 8.11e-14 | 67.4 |
| MS.gene25604.t1 | MTR_4g114870 | 27.941 | 136 | 84 | 3 | 7 | 128 | 8 | 143 | 2.48e-12 | 63.2 |
| MS.gene25604.t1 | MTR_1g090420 | 27.848 | 158 | 82 | 4 | 11 | 136 | 15 | 172 | 1.11e-13 | 65.9 |
| MS.gene25604.t1 | MTR_1g090190 | 33.094 | 139 | 75 | 5 | 18 | 141 | 17 | 152 | 1.28e-13 | 64.7 |
| MS.gene25604.t1 | MTR_4g130780 | 29.167 | 120 | 72 | 4 | 7 | 113 | 10 | 129 | 1.60e-13 | 64.7 |
| MS.gene25604.t1 | MTR_0334s0010 | 31.897 | 116 | 70 | 3 | 7 | 113 | 10 | 125 | 2.83e-13 | 64.3 |
| MS.gene25604.t1 | MTR_8g099220 | 30.081 | 123 | 72 | 3 | 1 | 109 | 1 | 123 | 2.97e-13 | 62.8 |
| MS.gene25604.t1 | MTR_6g013420 | 33.571 | 140 | 76 | 6 | 1 | 129 | 17 | 150 | 7.87e-13 | 62.8 |
| MS.gene25604.t1 | MTR_6g013200 | 31.724 | 145 | 84 | 5 | 5 | 139 | 16 | 155 | 1.86e-12 | 61.6 |
| MS.gene25604.t1 | MTR_1g077790 | 29.808 | 104 | 62 | 2 | 21 | 113 | 26 | 129 | 4.07e-12 | 61.2 |
| MS.gene25604.t1 | MTR_8g007020 | 31.169 | 154 | 81 | 6 | 5 | 136 | 6 | 156 | 6.03e-12 | 60.5 |
| MS.gene25604.t1 | MTR_3g099580 | 34.677 | 124 | 66 | 5 | 1 | 113 | 1 | 120 | 1.13e-11 | 59.7 |
| MS.gene25604.t1 | MTR_1g112700 | 25.676 | 148 | 85 | 4 | 3 | 127 | 12 | 157 | 1.15e-11 | 59.7 |
| MS.gene25604.t1 | MTR_4g067200 | 29.688 | 128 | 74 | 6 | 7 | 120 | 10 | 135 | 1.52e-11 | 59.3 |
| MS.gene25604.t1 | MTR_4g066110 | 29.688 | 128 | 74 | 6 | 7 | 120 | 10 | 135 | 1.52e-11 | 59.3 |
| MS.gene25604.t1 | MTR_4g130800 | 30.328 | 122 | 73 | 4 | 5 | 114 | 9 | 130 | 3.68e-11 | 59.3 |
| MS.gene25604.t1 | MTR_6g083240 | 30.323 | 155 | 87 | 5 | 7 | 140 | 8 | 162 | 4.48e-11 | 58.2 |
| MS.gene25604.t1 | MTR_5g087970 | 30.986 | 142 | 83 | 5 | 5 | 133 | 10 | 149 | 6.26e-11 | 57.4 |
| MS.gene25604.t1 | MTR_8g007035 | 33.884 | 121 | 68 | 5 | 5 | 116 | 6 | 123 | 8.79e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25604.t1 | AT4G27520 | 51.145 | 131 | 52 | 3 | 1 | 119 | 4 | 134 | 2.17e-39 | 135 |
| MS.gene25604.t1 | AT5G53870 | 47.482 | 139 | 62 | 2 | 7 | 134 | 13 | 151 | 4.29e-38 | 132 |
| MS.gene25604.t1 | AT5G53870 | 47.482 | 139 | 62 | 2 | 7 | 134 | 13 | 151 | 4.34e-38 | 132 |
| MS.gene25604.t1 | AT4G28365 | 44.805 | 154 | 68 | 5 | 1 | 138 | 5 | 157 | 5.51e-37 | 125 |
| MS.gene25604.t1 | AT2G25060 | 48.148 | 135 | 56 | 5 | 4 | 126 | 13 | 145 | 2.18e-34 | 118 |
| MS.gene25604.t1 | AT4G32490 | 38.562 | 153 | 64 | 4 | 16 | 138 | 23 | 175 | 1.04e-31 | 112 |
| MS.gene25604.t1 | AT4G31840 | 42.667 | 150 | 68 | 5 | 5 | 140 | 8 | 153 | 1.07e-31 | 111 |
| MS.gene25604.t1 | AT3G20570 | 36.250 | 160 | 75 | 3 | 9 | 141 | 15 | 174 | 2.08e-30 | 108 |
| MS.gene25604.t1 | AT4G30590 | 38.816 | 152 | 78 | 4 | 1 | 137 | 1 | 152 | 1.07e-27 | 101 |
| MS.gene25604.t1 | AT2G23990 | 42.105 | 133 | 64 | 5 | 5 | 125 | 8 | 139 | 1.55e-25 | 96.7 |
| MS.gene25604.t1 | AT5G25090 | 39.516 | 124 | 64 | 3 | 5 | 117 | 7 | 130 | 1.55e-25 | 95.9 |
| MS.gene25604.t1 | AT5G57920 | 39.167 | 120 | 62 | 3 | 8 | 116 | 6 | 125 | 1.17e-24 | 93.6 |
| MS.gene25604.t1 | AT5G57920 | 43.119 | 109 | 51 | 3 | 19 | 116 | 18 | 126 | 1.97e-24 | 93.2 |
| MS.gene25604.t1 | AT5G57920 | 42.202 | 109 | 52 | 3 | 19 | 116 | 50 | 158 | 3.25e-24 | 93.2 |
| MS.gene25604.t1 | AT2G23990 | 36.842 | 152 | 64 | 5 | 5 | 125 | 8 | 158 | 2.08e-22 | 89.0 |
| MS.gene25604.t1 | AT1G79800 | 34.228 | 149 | 76 | 5 | 4 | 138 | 11 | 151 | 1.12e-19 | 80.9 |
| MS.gene25604.t1 | AT5G14345 | 34.646 | 127 | 72 | 4 | 9 | 126 | 2 | 126 | 2.83e-19 | 79.0 |
| MS.gene25604.t1 | AT3G18590 | 38.333 | 120 | 63 | 3 | 5 | 114 | 9 | 127 | 2.28e-18 | 77.4 |
| MS.gene25604.t1 | AT1G48940 | 37.500 | 120 | 61 | 3 | 5 | 114 | 11 | 126 | 5.17e-18 | 76.3 |
| MS.gene25604.t1 | AT5G07475 | 30.345 | 145 | 88 | 4 | 1 | 135 | 7 | 148 | 1.23e-16 | 73.2 |
| MS.gene25604.t1 | AT2G31050 | 32.283 | 127 | 77 | 2 | 8 | 126 | 13 | 138 | 1.12e-15 | 70.9 |
| MS.gene25604.t1 | AT2G32300 | 30.496 | 141 | 84 | 3 | 10 | 138 | 12 | 150 | 3.65e-13 | 64.7 |
| MS.gene25604.t1 | AT2G32300 | 30.496 | 141 | 84 | 3 | 10 | 138 | 42 | 180 | 4.35e-13 | 65.1 |
| MS.gene25604.t1 | AT5G26330 | 28.571 | 126 | 82 | 1 | 1 | 118 | 1 | 126 | 8.46e-13 | 62.8 |
| MS.gene25604.t1 | AT3G17675 | 29.412 | 119 | 72 | 3 | 5 | 113 | 11 | 127 | 1.34e-12 | 61.2 |
| MS.gene25604.t1 | AT3G60270 | 32.039 | 103 | 61 | 3 | 21 | 116 | 23 | 123 | 5.64e-12 | 60.5 |
| MS.gene25604.t1 | AT2G26720 | 30.275 | 109 | 67 | 2 | 26 | 126 | 31 | 138 | 7.14e-12 | 60.8 |
| MS.gene25604.t1 | AT1G64640 | 31.092 | 119 | 72 | 3 | 24 | 133 | 33 | 150 | 1.52e-11 | 59.7 |
| MS.gene25604.t1 | AT1G72230 | 31.538 | 130 | 76 | 4 | 3 | 132 | 10 | 126 | 3.79e-11 | 58.2 |
Find 43 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTTCGAATTTCTTGAT+TGG | 0.305544 | 8.2:-44302452 | None:intergenic |
| CTTGGTGAAGGAGAAGGTTT+TGG | 0.314318 | 8.2:-44302590 | None:intergenic |
| CATCTTCGAATTTCTTGATT+GGG | 0.341423 | 8.2:-44302451 | None:intergenic |
| AACCTGTTCCTTCCAGCCAC+TGG | 0.418860 | 8.2:-44299990 | None:intergenic |
| TCCACCAACGAAATACTTGA+AGG | 0.422626 | 8.2:-44299929 | None:intergenic |
| AAATGATCAAAACTGTGAAA+AGG | 0.438673 | 8.2:+44302526 | MS.gene25604:CDS |
| AATGATCAAAACTGTGAAAA+GGG | 0.450850 | 8.2:+44302527 | MS.gene25604:CDS |
| GCCTTCAAGTATTTCGTTGG+TGG | 0.451428 | 8.2:+44299928 | MS.gene25604:CDS |
| GAGTTCACCTTGGACAGGGC+AGG | 0.476565 | 8.2:+44302482 | MS.gene25604:CDS |
| TCTCCTTCACCAAGTGGTGG+TGG | 0.481540 | 8.2:+44302599 | MS.gene25604:CDS |
| AACCAGTGGCTGGAAGGAAC+AGG | 0.481833 | 8.2:+44299988 | MS.gene25604:CDS |
| CAAGTATTTCGTTGGTGGAA+AGG | 0.487435 | 8.2:+44299933 | MS.gene25604:CDS |
| CTTATCCACCTTGCATCAAG+TGG | 0.491604 | 8.2:-44302654 | None:intergenic |
| TATTTCGTTGGTGGAAAGGA+TGG | 0.506955 | 8.2:+44299937 | MS.gene25604:CDS |
| CAAGCCTTCAAGTATTTCGT+TGG | 0.517033 | 8.2:+44299925 | MS.gene25604:CDS |
| TGAGAATTACAACCAGTGGC+TGG | 0.521889 | 8.2:+44299978 | MS.gene25604:CDS |
| CACTGGTTGTAATTCTCAGA+AGG | 0.522755 | 8.2:-44299973 | None:intergenic |
| AGACAGAGTTCACCTTGGAC+AGG | 0.529711 | 8.2:+44302477 | MS.gene25604:CDS |
| CCAATCAAGAAATTCGAAGA+TGG | 0.535933 | 8.2:+44302452 | MS.gene25604:CDS |
| TTTCCACTGATGAAATAGAA+TGG | 0.537250 | 8.2:-44302506 | None:intergenic |
| GTGAAGAGAACAAAGAAGAG+AGG | 0.543513 | 8.2:-44299883 | None:intergenic |
| CCACCACTTGGTGAAGGAGA+AGG | 0.549101 | 8.2:-44302596 | None:intergenic |
| GAATGGCCCTGCCCTGTCCA+AGG | 0.569470 | 8.2:-44302489 | None:intergenic |
| AGTTCACCTTGGACAGGGCA+GGG | 0.578309 | 8.2:+44302483 | MS.gene25604:CDS |
| GAAGGGTTCAGACTCGGTGT+TGG | 0.583480 | 8.2:+44302388 | MS.gene25604:CDS |
| CAAGTGGTTGTCGTTGGTGA+CGG | 0.584629 | 8.2:-44302638 | None:intergenic |
| GGGCCATTCTATTTCATCAG+TGG | 0.586791 | 8.2:+44302503 | MS.gene25604:CDS |
| ACTGGTTGTAATTCTCAGAA+GGG | 0.587131 | 8.2:-44299972 | None:intergenic |
| GTTGTCGTTGGTGACGGTGA+AGG | 0.587432 | 8.2:-44302632 | None:intergenic |
| AATTACAACCAGTGGCTGGA+AGG | 0.593258 | 8.2:+44299982 | MS.gene25604:CDS |
| TCGTTGGTGGAAAGGATGGA+TGG | 0.594920 | 8.2:+44299941 | MS.gene25604:CDS |
| TTGCATCAAGTGGTTGTCGT+TGG | 0.606772 | 8.2:-44302644 | None:intergenic |
| GTACAAGAAGGGTTCAGACT+CGG | 0.611620 | 8.2:+44302382 | MS.gene25604:CDS |
| GTCGTTGGTGACGGTGAAGG+TGG | 0.613000 | 8.2:-44302629 | None:intergenic |
| GAGCCACCACCACTTGGTGA+AGG | 0.614205 | 8.2:-44302602 | None:intergenic |
| GACAGAGTTCACCTTGGACA+GGG | 0.618029 | 8.2:+44302478 | MS.gene25604:CDS |
| GGTGATGAGCCACCACCACT+TGG | 0.646510 | 8.2:-44302608 | None:intergenic |
| AAACCTTCTCCTTCACCAAG+TGG | 0.651577 | 8.2:+44302593 | MS.gene25604:CDS |
| CCTTCTCCTTCACCAAGTGG+TGG | 0.655873 | 8.2:+44302596 | MS.gene25604:CDS |
| CTTCTGAGAATTACAACCAG+TGG | 0.661573 | 8.2:+44299974 | MS.gene25604:CDS |
| TTCGTGGAGATATAACAACA+AGG | 0.703073 | 8.2:-44302562 | None:intergenic |
| TGGTGAGACAGAGTTCACCT+TGG | 0.704664 | 8.2:+44302472 | MS.gene25604:CDS |
| TCGTGGAGATATAACAACAA+GGG | 0.706449 | 8.2:-44302561 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATTAATAATAACG+TGG | - | chr8.2:44301909-44301928 | None:intergenic | 10.0% |
| !! | AATTAAATTAATAATAACGT+GGG | - | chr8.2:44301908-44301927 | None:intergenic | 10.0% |
| !!! | GTATATATGAAATTAATTTT+TGG | + | chr8.2:44302057-44302076 | MS.gene25604:intron | 10.0% |
| !! | ATTAAATTAATAATAACGTG+GGG | - | chr8.2:44301907-44301926 | None:intergenic | 15.0% |
| !!! | AAAATTTTATAGGAAAAACA+AGG | - | chr8.2:44302294-44302313 | None:intergenic | 15.0% |
| !!! | GAAGTTTTTTTTTTTTTTGA+AGG | + | chr8.2:44301993-44302012 | MS.gene25604:intron | 15.0% |
| !!! | TTTAAGTTGCAAAATTTTAT+AGG | - | chr8.2:44302304-44302323 | None:intergenic | 15.0% |
| !! | AAATGCAATAAATGCTAAAA+TGG | + | chr8.2:44301665-44301684 | MS.gene25604:intron | 20.0% |
| !! | ACAAAATATGATAAGATCAA+AGG | + | chr8.2:44301732-44301751 | MS.gene25604:intron | 20.0% |
| !! | ATAAATCTGATTTAGATTGA+AGG | + | chr8.2:44300300-44300319 | MS.gene25604:intron | 20.0% |
| !! | ATTTATTGCATTTCATAACA+TGG | - | chr8.2:44301658-44301677 | None:intergenic | 20.0% |
| !! | GTTAAATGATCAATTTAATG+TGG | - | chr8.2:44300849-44300868 | None:intergenic | 20.0% |
| !! | TAAATCTGATTTAGATTGAA+GGG | + | chr8.2:44300301-44300320 | MS.gene25604:intron | 20.0% |
| !! | TTCAATCTAAATCAGATTTA+TGG | - | chr8.2:44300301-44300320 | None:intergenic | 20.0% |
| !!! | AAAATCAACAATTTGAAACA+AGG | - | chr8.2:44301040-44301059 | None:intergenic | 20.0% |
| !!! | ACATTTTCAATATAAAAGGT+GGG | + | chr8.2:44300134-44300153 | MS.gene25604:intron | 20.0% |
| !!! | ATGAAATTAATTTTTGGTCT+AGG | + | chr8.2:44302063-44302082 | MS.gene25604:intron | 20.0% |
| !!! | CAAGACATTTTCAATATAAA+AGG | + | chr8.2:44300130-44300149 | MS.gene25604:intron | 20.0% |
| !!! | TGAAATTAATTTTTGGTCTA+GGG | + | chr8.2:44302064-44302083 | MS.gene25604:intron | 20.0% |
| !!! | TTGTTTCAAATTGTTGATTT+TGG | + | chr8.2:44301039-44301058 | MS.gene25604:intron | 20.0% |
| ! | AAAAACTCAAGTTCTTATGT+TGG | - | chr8.2:44300825-44300844 | None:intergenic | 25.0% |
| ! | AAACCTGTAAATTTACCTAA+TGG | - | chr8.2:44300203-44300222 | None:intergenic | 25.0% |
| ! | AAATGATCAAAACTGTGAAA+AGG | + | chr8.2:44302526-44302545 | MS.gene25604:CDS | 25.0% |
| ! | AACAAATTGAAGTTCATTGA+TGG | - | chr8.2:44301268-44301287 | None:intergenic | 25.0% |
| ! | AATGATCAAAACTGTGAAAA+GGG | + | chr8.2:44302527-44302546 | MS.gene25604:CDS | 25.0% |
| ! | ATAGTAGAATATGTTTAGTG+TGG | + | chr8.2:44302102-44302121 | MS.gene25604:intron | 25.0% |
| ! | ATCAGATTAAGAGTGAATAA+TGG | + | chr8.2:44300101-44300120 | MS.gene25604:intron | 25.0% |
| ! | GAACAACCAAAAAAGATTAA+AGG | - | chr8.2:44302248-44302267 | None:intergenic | 25.0% |
| ! | TAGGTAAATTTACAGGTTTA+GGG | + | chr8.2:44300204-44300223 | MS.gene25604:intron | 25.0% |
| ! | TAGTGAATACACTTTGTTAA+TGG | + | chr8.2:44300787-44300806 | MS.gene25604:intron | 25.0% |
| ! | TCAGATTAAGAGTGAATAAT+GGG | + | chr8.2:44300102-44300121 | MS.gene25604:intron | 25.0% |
| ! | TTAGGTAAATTTACAGGTTT+AGG | + | chr8.2:44300203-44300222 | MS.gene25604:intron | 25.0% |
| !! | ACATTGTTTCTTCAATTCAT+TGG | - | chr8.2:44300253-44300272 | None:intergenic | 25.0% |
| !! | GAAATAATCCAAAACAGTTT+TGG | + | chr8.2:44301012-44301031 | MS.gene25604:intron | 25.0% |
| !! | GACATTTTCAATATAAAAGG+TGG | + | chr8.2:44300133-44300152 | MS.gene25604:intron | 25.0% |
| !!! | ATAGTTTTCAAGTACAAGAA+GGG | + | chr8.2:44302371-44302390 | MS.gene25604:intron | 25.0% |
| !!! | GTTAGTTACAAAGTTTGTTA+CGG | - | chr8.2:44301600-44301619 | None:intergenic | 25.0% |
| !!! | TACGATCCTTTAATCTTTTT+TGG | + | chr8.2:44302239-44302258 | MS.gene25604:intron | 25.0% |
| !!! | TATAGTTTTCAAGTACAAGA+AGG | + | chr8.2:44302370-44302389 | MS.gene25604:intron | 25.0% |
| ACTAAAACAGAAGAACCATT+AGG | + | chr8.2:44300185-44300204 | MS.gene25604:intron | 30.0% | |
| AGAAATTTCTGCAACAACAA+TGG | + | chr8.2:44301543-44301562 | MS.gene25604:intron | 30.0% | |
| AGGTAAATTTACAGGTTTAG+GGG | + | chr8.2:44300205-44300224 | MS.gene25604:intron | 30.0% | |
| AGTATGAATATGATTGGTAC+TGG | + | chr8.2:44300379-44300398 | MS.gene25604:intron | 30.0% | |
| ATACTTCTCCTGAGAAATAT+TGG | + | chr8.2:44300457-44300476 | MS.gene25604:intron | 30.0% | |
| ATTGAAACTGATCAAAACCA+TGG | - | chr8.2:44301953-44301972 | None:intergenic | 30.0% | |
| CACTGAAATGAAAACTCTAT+GGG | - | chr8.2:44300993-44301012 | None:intergenic | 30.0% | |
| CAGATTAAGAGTGAATAATG+GGG | + | chr8.2:44300103-44300122 | MS.gene25604:intron | 30.0% | |
| CATCTTCGAATTTCTTGATT+GGG | - | chr8.2:44302454-44302473 | None:intergenic | 30.0% | |
| GAACCATTAGGTAAATTTAC+AGG | + | chr8.2:44300197-44300216 | MS.gene25604:intron | 30.0% | |
| GAATACACTTTGTTAATGGA+AGG | + | chr8.2:44300791-44300810 | MS.gene25604:intron | 30.0% | |
| GATAGCAATAATCAACAGTA+TGG | + | chr8.2:44300597-44300616 | MS.gene25604:intron | 30.0% | |
| GATTATTGCTATCAAAAGCA+TGG | - | chr8.2:44300590-44300609 | None:intergenic | 30.0% | |
| GCAATCATCTTATTCAATCT+TGG | - | chr8.2:44301192-44301211 | None:intergenic | 30.0% | |
| TCACTGAAATGAAAACTCTA+TGG | - | chr8.2:44300994-44301013 | None:intergenic | 30.0% | |
| TTTCCACTGATGAAATAGAA+TGG | - | chr8.2:44302509-44302528 | None:intergenic | 30.0% | |
| TTTGTAACTAACTTTCTCCA+TGG | + | chr8.2:44301608-44301627 | MS.gene25604:intron | 30.0% | |
| ! | GTTATGTCACTTAATAACGT+GGG | - | chr8.2:44300049-44300068 | None:intergenic | 30.0% |
| ! | TGAAGGAGTATGAATATGAT+TGG | + | chr8.2:44300373-44300392 | MS.gene25604:intron | 30.0% |
| ! | TGTTATGTCACTTAATAACG+TGG | - | chr8.2:44300050-44300069 | None:intergenic | 30.0% |
| ! | TTATGTCACTTAATAACGTG+GGG | - | chr8.2:44300048-44300067 | None:intergenic | 30.0% |
| ! | TTTAGGGGTAATTTTGTGAT+AGG | + | chr8.2:44300220-44300239 | MS.gene25604:intron | 30.0% |
| !! | AAGTCATTCAGTTTTTGACT+GGG | - | chr8.2:44300871-44300890 | None:intergenic | 30.0% |
| !! | TTCTTCTTCGTTTTTCACAA+TGG | - | chr8.2:44301434-44301453 | None:intergenic | 30.0% |
| !!! | TTAGTGTGGATTTTGTTGTT+TGG | + | chr8.2:44302116-44302135 | MS.gene25604:intron | 30.0% |
| ACTGGTTGTAATTCTCAGAA+GGG | - | chr8.2:44299975-44299994 | None:intergenic | 35.0% | |
| ACTTTGTTAATGGAAGGAAG+TGG | + | chr8.2:44300797-44300816 | MS.gene25604:intron | 35.0% | |
| CCAATCAAGAAATTCGAAGA+TGG | + | chr8.2:44302452-44302471 | MS.gene25604:CDS | 35.0% | |
| CCATCTTCGAATTTCTTGAT+TGG | - | chr8.2:44302455-44302474 | None:intergenic | 35.0% | |
| CTATGTAACATACAACTCCA+TGG | + | chr8.2:44301933-44301952 | MS.gene25604:intron | 35.0% | |
| GATATACCTGAACCAGTAAA+AGG | + | chr8.2:44300341-44300360 | MS.gene25604:intron | 35.0% | |
| GTAAAAGGTTGTGAGTTTGA+AGG | + | chr8.2:44300356-44300375 | MS.gene25604:intron | 35.0% | |
| GTATTCACTAGTGATTCAAG+AGG | - | chr8.2:44300777-44300796 | None:intergenic | 35.0% | |
| TCGTGGAGATATAACAACAA+GGG | - | chr8.2:44302564-44302583 | None:intergenic | 35.0% | |
| TGAGAGAAGCAAGAAACTTT+AGG | - | chr8.2:44300904-44300923 | None:intergenic | 35.0% | |
| TTCCAAATCAGTGACACTAT+AGG | + | chr8.2:44300011-44300030 | MS.gene25604:intron | 35.0% | |
| TTCGTGGAGATATAACAACA+AGG | - | chr8.2:44302565-44302584 | None:intergenic | 35.0% | |
| TTGAAGGGAACAAGTGAAAA+TGG | + | chr8.2:44300316-44300335 | MS.gene25604:intron | 35.0% | |
| ! | AATATGATTGGTACTGGATG+TGG | + | chr8.2:44300385-44300404 | MS.gene25604:intron | 35.0% |
| ! | ACAAGGTTCCAAAACTGTTT+TGG | - | chr8.2:44301023-44301042 | None:intergenic | 35.0% |
| ! | CAAGTCATTCAGTTTTTGAC+TGG | - | chr8.2:44300872-44300891 | None:intergenic | 35.0% |
| ! | CGTTCTATGATTCGTACTTT+TGG | - | chr8.2:44301298-44301317 | None:intergenic | 35.0% |
| ! | GAAGTTCATTGATGGTTCTA+TGG | - | chr8.2:44301260-44301279 | None:intergenic | 35.0% |
| ! | GATTTATGGCTTTTAGACTC+TGG | - | chr8.2:44300287-44300306 | None:intergenic | 35.0% |
| ! | TACCTATAGTGTCACTGATT+TGG | - | chr8.2:44300016-44300035 | None:intergenic | 35.0% |
| ! | TCAAACTCACAACCTTTTAC+TGG | - | chr8.2:44300356-44300375 | None:intergenic | 35.0% |
| !!! | TCTGTTTTAGTTGACATTGC+TGG | - | chr8.2:44300176-44300195 | None:intergenic | 35.0% |
| AAAGGTGGGAGTGAAATGAA+TGG | + | chr8.2:44300148-44300167 | MS.gene25604:intron | 40.0% | |
| AATGCTACTGAATCCTCACA+TGG | - | chr8.2:44300701-44300720 | None:intergenic | 40.0% | |
| ACAAGAGTTTGCGCAATTTG+CGG | + | chr8.2:44301148-44301167 | MS.gene25604:intron | 40.0% | |
| ACAAGGGAAAGAGATTCATC+AGG | + | chr8.2:44300722-44300741 | MS.gene25604:intron | 40.0% | |
| AGCAAGAAACTTTAGGCTTG+AGG | - | chr8.2:44300897-44300916 | None:intergenic | 40.0% | |
| AGGATTCAGTAGCATTCACA+AGG | + | chr8.2:44300705-44300724 | MS.gene25604:intron | 40.0% | |
| AGGTAATTGGAGCCATCTAA+TGG | + | chr8.2:44301328-44301347 | MS.gene25604:intron | 40.0% | |
| ATGAAAACGCCATTGATGCA+TGG | - | chr8.2:44301123-44301142 | None:intergenic | 40.0% | |
| ATGATTTGAATCGTGCTGCA+TGG | - | chr8.2:44301222-44301241 | None:intergenic | 40.0% | |
| CAAGCCTTCAAGTATTTCGT+TGG | + | chr8.2:44299925-44299944 | MS.gene25604:CDS | 40.0% | |
| CTCCATGGAAATGAGAGAAA+AGG | + | chr8.2:44301623-44301642 | MS.gene25604:intron | 40.0% | |
| CTTGTTACTCCTCCATTAGA+TGG | - | chr8.2:44301343-44301362 | None:intergenic | 40.0% | |
| GATGAAATTGAGACACAACC+AGG | - | chr8.2:44300515-44300534 | None:intergenic | 40.0% | |
| GGAGTAACAAGAACAGAGTT+CGG | + | chr8.2:44301352-44301371 | MS.gene25604:intron | 40.0% | |
| GGATTCAGTAGCATTCACAA+GGG | + | chr8.2:44300706-44300725 | MS.gene25604:intron | 40.0% | |
| GGGAAGAGTTGAATTCACAT+AGG | - | chr8.2:44300973-44300992 | None:intergenic | 40.0% | |
| GTGAAGAGAACAAAGAAGAG+AGG | - | chr8.2:44299886-44299905 | None:intergenic | 40.0% | |
| TAATTGGAGCCATCTAATGG+AGG | + | chr8.2:44301331-44301350 | MS.gene25604:intron | 40.0% | |
| TCCACCAACGAAATACTTGA+AGG | - | chr8.2:44299932-44299951 | None:intergenic | 40.0% | |
| TCCTGAGAAATATTGGTACC+AGG | + | chr8.2:44300464-44300483 | MS.gene25604:intron | 40.0% | |
| TCCTGGTACCAATATTTCTC+AGG | - | chr8.2:44300468-44300487 | None:intergenic | 40.0% | |
| TGATTTGAATCGTGCTGCAT+GGG | - | chr8.2:44301221-44301240 | None:intergenic | 40.0% | |
| TGCAAGTAACTTCCTTAGCT+TGG | - | chr8.2:44301788-44301807 | None:intergenic | 40.0% | |
| TTCTATGTTCATCCGAGTGA+AGG | - | chr8.2:44301379-44301398 | None:intergenic | 40.0% | |
| ! | AGATCCTTGCTTCTGAAAGT+TGG | + | chr8.2:44300559-44300578 | MS.gene25604:intron | 40.0% |
| ! | AGCCTTTTCTCTCATTTCCA+TGG | - | chr8.2:44301628-44301647 | None:intergenic | 40.0% |
| ! | CAAGTATTTCGTTGGTGGAA+AGG | + | chr8.2:44299933-44299952 | MS.gene25604:CDS | 40.0% |
| ! | CACTGGTTGTAATTCTCAGA+AGG | - | chr8.2:44299976-44299995 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATTACAACCAG+TGG | + | chr8.2:44299974-44299993 | MS.gene25604:CDS | 40.0% |
| ! | GATCCTTGCTTCTGAAAGTT+GGG | + | chr8.2:44300560-44300579 | MS.gene25604:intron | 40.0% |
| ! | TATTTCGTTGGTGGAAAGGA+TGG | + | chr8.2:44299937-44299956 | MS.gene25604:CDS | 40.0% |
| !!! | TCACAACCTTTTACTGGTTC+AGG | - | chr8.2:44300350-44300369 | None:intergenic | 40.0% |
| AAACCTTCTCCTTCACCAAG+TGG | + | chr8.2:44302593-44302612 | MS.gene25604:CDS | 45.0% | |
| AATTACAACCAGTGGCTGGA+AGG | + | chr8.2:44299982-44300001 | MS.gene25604:CDS | 45.0% | |
| ACAACCAGGAAGTAGTAGTG+AGG | - | chr8.2:44300501-44300520 | None:intergenic | 45.0% | |
| ACTGAATCCTCACATGGTAG+AGG | - | chr8.2:44300695-44300714 | None:intergenic | 45.0% | |
| AGAGGAAGGGGATATTCTTC+TGG | - | chr8.2:44300665-44300684 | None:intergenic | 45.0% | |
| AGGGAAAGAGATTCATCAGG+AGG | + | chr8.2:44300725-44300744 | MS.gene25604:intron | 45.0% | |
| AGTGAGGCTTCTTCAAATCC+TGG | - | chr8.2:44300485-44300504 | None:intergenic | 45.0% | |
| CAGCTTATCAAGCCAAGCTA+AGG | + | chr8.2:44301773-44301792 | MS.gene25604:intron | 45.0% | |
| CATCCCAACTTTCAGAAGCA+AGG | - | chr8.2:44300566-44300585 | None:intergenic | 45.0% | |
| CCACAGAAACTGCATTGTCT+GGG | + | chr8.2:44300629-44300648 | MS.gene25604:intron | 45.0% | |
| CTCATTGCTGCACATCTACA+GGG | + | chr8.2:44300920-44300939 | MS.gene25604:intron | 45.0% | |
| GAGATCTTGCCATGCATCAA+TGG | + | chr8.2:44301111-44301130 | MS.gene25604:intron | 45.0% | |
| GCCTTCAAGTATTTCGTTGG+TGG | + | chr8.2:44299928-44299947 | MS.gene25604:CDS | 45.0% | |
| GGGCCATTCTATTTCATCAG+TGG | + | chr8.2:44302503-44302522 | MS.gene25604:CDS | 45.0% | |
| GGGGATATTCTTCTGGATTC+AGG | - | chr8.2:44300658-44300677 | None:intergenic | 45.0% | |
| GTACAAGAAGGGTTCAGACT+CGG | + | chr8.2:44302382-44302401 | MS.gene25604:CDS | 45.0% | |
| TCTCATTGCTGCACATCTAC+AGG | + | chr8.2:44300919-44300938 | MS.gene25604:intron | 45.0% | |
| TGAGAATTACAACCAGTGGC+TGG | + | chr8.2:44299978-44299997 | MS.gene25604:CDS | 45.0% | |
| TGATGCATGGCAAGATCTCA+AGG | - | chr8.2:44301110-44301129 | None:intergenic | 45.0% | |
| ! | CTTGGTGAAGGAGAAGGTTT+TGG | - | chr8.2:44302593-44302612 | None:intergenic | 45.0% |
| ACAGAGTTCGGTCCTTCACT+CGG | + | chr8.2:44301364-44301383 | MS.gene25604:intron | 50.0% | |
| ACGACTCCATGCGAGGTAAT+TGG | + | chr8.2:44301315-44301334 | MS.gene25604:intron | 50.0% | |
| AGACAGAGTTCACCTTGGAC+AGG | + | chr8.2:44302477-44302496 | MS.gene25604:CDS | 50.0% | |
| ATGGCTCCAATTACCTCGCA+TGG | - | chr8.2:44301324-44301343 | None:intergenic | 50.0% | |
| CAGAAACTGCATTGTCTGGG+TGG | + | chr8.2:44300632-44300651 | MS.gene25604:intron | 50.0% | |
| CCCAGACAATGCAGTTTCTG+TGG | - | chr8.2:44300632-44300651 | None:intergenic | 50.0% | |
| CTGCACATCTACAGGGATGA+GGG | + | chr8.2:44300927-44300946 | MS.gene25604:intron | 50.0% | |
| GAAGCCTCACTACTACTTCC+TGG | + | chr8.2:44300494-44300513 | MS.gene25604:intron | 50.0% | |
| GACAGAGTTCACCTTGGACA+GGG | + | chr8.2:44302478-44302497 | MS.gene25604:CDS | 50.0% | |
| GCCACAGAAACTGCATTGTC+TGG | + | chr8.2:44300628-44300647 | MS.gene25604:intron | 50.0% | |
| TACTGGATGTGGAAGCTGCA+GGG | + | chr8.2:44300396-44300415 | MS.gene25604:intron | 50.0% | |
| TAGAGGCAGAGGAAGAGGAA+GGG | - | chr8.2:44300678-44300697 | None:intergenic | 50.0% | |
| TCATAGAACGACTCCATGCG+AGG | + | chr8.2:44301308-44301327 | MS.gene25604:intron | 50.0% | |
| TGGTGAGACAGAGTTCACCT+TGG | + | chr8.2:44302472-44302491 | MS.gene25604:CDS | 50.0% | |
| ! | CAAGTGGTTGTCGTTGGTGA+CGG | - | chr8.2:44302641-44302660 | None:intergenic | 50.0% |
| ! | TCGTTGGTGGAAAGGATGGA+TGG | + | chr8.2:44299941-44299960 | MS.gene25604:CDS | 50.0% |
| !! | GGTGAAGGAGAAGGTTTTGG+TGG | - | chr8.2:44302590-44302609 | None:intergenic | 50.0% |
| !!! | GAAGGTTTTGGTGGTGTTCG+TGG | - | chr8.2:44302581-44302600 | None:intergenic | 50.0% |
| AACCAGTGGCTGGAAGGAAC+AGG | + | chr8.2:44299988-44300007 | MS.gene25604:CDS | 55.0% | |
| AACCTGTTCCTTCCAGCCAC+TGG | - | chr8.2:44299993-44300012 | None:intergenic | 55.0% | |
| AGAGGCAGAGGAAGAGGAAG+GGG | - | chr8.2:44300677-44300696 | None:intergenic | 55.0% | |
| AGTTCACCTTGGACAGGGCA+GGG | + | chr8.2:44302483-44302502 | MS.gene25604:CDS | 55.0% | |
| CATGGTAGAGGCAGAGGAAG+AGG | - | chr8.2:44300683-44300702 | None:intergenic | 55.0% | |
| CCTTCTCCTTCACCAAGTGG+TGG | + | chr8.2:44302596-44302615 | MS.gene25604:CDS | 55.0% | |
| GCTGCACATCTACAGGGATG+AGG | + | chr8.2:44300926-44300945 | MS.gene25604:intron | 55.0% | |
| GGGCATGTGCAATGAGGCAT+AGG | + | chr8.2:44300947-44300966 | MS.gene25604:intron | 55.0% | |
| GTACTGGATGTGGAAGCTGC+AGG | + | chr8.2:44300395-44300414 | MS.gene25604:intron | 55.0% | |
| GTAGAGGCAGAGGAAGAGGA+AGG | - | chr8.2:44300679-44300698 | None:intergenic | 55.0% | |
| TCCTCACATGGTAGAGGCAG+AGG | - | chr8.2:44300689-44300708 | None:intergenic | 55.0% | |
| TCCTCTGCCTCTACCATGTG+AGG | + | chr8.2:44300685-44300704 | MS.gene25604:intron | 55.0% | |
| TCTCCTTCACCAAGTGGTGG+TGG | + | chr8.2:44302599-44302618 | MS.gene25604:CDS | 55.0% | |
| ! | CCACCACTTGGTGAAGGAGA+AGG | - | chr8.2:44302599-44302618 | None:intergenic | 55.0% |
| ! | GGATGAGGGCATGTGCAATG+AGG | + | chr8.2:44300941-44300960 | MS.gene25604:intron | 55.0% |
| !! | GAAGGGTTCAGACTCGGTGT+TGG | + | chr8.2:44302388-44302407 | MS.gene25604:CDS | 55.0% |
| !! | GTTGTCGTTGGTGACGGTGA+AGG | - | chr8.2:44302635-44302654 | None:intergenic | 55.0% |
| GAGTTCACCTTGGACAGGGC+AGG | + | chr8.2:44302482-44302501 | MS.gene25604:CDS | 60.0% | |
| GGTGATGAGCCACCACCACT+TGG | - | chr8.2:44302611-44302630 | None:intergenic | 60.0% | |
| ! | GAGCCACCACCACTTGGTGA+AGG | - | chr8.2:44302605-44302624 | None:intergenic | 60.0% |
| !! | GTCGTTGGTGACGGTGAAGG+TGG | - | chr8.2:44302632-44302651 | None:intergenic | 60.0% |
| GAATGGCCCTGCCCTGTCCA+AGG | - | chr8.2:44302492-44302511 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 44299868 | 44302661 | 44299868 | ID=MS.gene25604 |
| chr8.2 | mRNA | 44299868 | 44302661 | 44299868 | ID=MS.gene25604.t1;Parent=MS.gene25604 |
| chr8.2 | exon | 44299868 | 44300009 | 44299868 | ID=MS.gene25604.t1.exon1;Parent=MS.gene25604.t1 |
| chr8.2 | CDS | 44299868 | 44300009 | 44299868 | ID=cds.MS.gene25604.t1;Parent=MS.gene25604.t1 |
| chr8.2 | exon | 44302375 | 44302661 | 44302375 | ID=MS.gene25604.t1.exon2;Parent=MS.gene25604.t1 |
| chr8.2 | CDS | 44302375 | 44302661 | 44302375 | ID=cds.MS.gene25604.t1;Parent=MS.gene25604.t1 |
| Gene Sequence |
| Protein sequence |
