Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25687.t1 | KEH32476.1 | 98.8 | 81 | 1 | 0 | 86 | 166 | 5 | 85 | 1.50E-42 | 182.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25687.t1 | A0A072UT09 | 98.8 | 81 | 1 | 0 | 86 | 166 | 5 | 85 | 1.1e-42 | 182.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24849 | MS.gene25687 | PPI |
| MS.gene051831 | MS.gene25687 | PPI |
| MS.gene012242 | MS.gene25687 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25687.t1 | MTR_4g125770 | 74.138 | 116 | 24 | 1 | 57 | 166 | 7 | 122 | 3.87e-58 | 178 |
| MS.gene25687.t1 | MTR_4g125770 | 74.336 | 113 | 26 | 1 | 57 | 166 | 7 | 119 | 1.19e-57 | 177 |
| MS.gene25687.t1 | MTR_4g125770 | 98.765 | 81 | 1 | 0 | 86 | 166 | 5 | 85 | 3.36e-57 | 174 |
| MS.gene25687.t1 | MTR_8g018810 | 74.603 | 63 | 16 | 0 | 95 | 157 | 8 | 70 | 1.28e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25687.t1 | AT4G26060 | 60.825 | 97 | 31 | 2 | 70 | 166 | 27 | 116 | 5.27e-39 | 129 |
| MS.gene25687.t1 | AT5G57060 | 57.426 | 101 | 39 | 1 | 70 | 166 | 17 | 117 | 2.06e-38 | 128 |
| MS.gene25687.t1 | AT5G57060 | 57.426 | 101 | 39 | 1 | 70 | 166 | 17 | 117 | 2.06e-38 | 128 |
| MS.gene25687.t1 | AT5G57060 | 57.426 | 101 | 39 | 1 | 70 | 166 | 17 | 117 | 2.06e-38 | 128 |
| MS.gene25687.t1 | AT5G57060 | 57.426 | 101 | 39 | 1 | 70 | 166 | 17 | 117 | 2.06e-38 | 128 |
| MS.gene25687.t1 | AT5G57060 | 57.426 | 101 | 39 | 1 | 70 | 166 | 17 | 117 | 2.06e-38 | 128 |
| MS.gene25687.t1 | AT5G57060 | 57.426 | 101 | 39 | 1 | 70 | 166 | 26 | 126 | 3.37e-38 | 128 |
| MS.gene25687.t1 | AT5G57060 | 57.426 | 101 | 39 | 1 | 70 | 166 | 26 | 126 | 3.37e-38 | 128 |
| MS.gene25687.t1 | AT5G57060 | 61.957 | 92 | 29 | 1 | 75 | 166 | 5 | 90 | 7.77e-38 | 125 |
| MS.gene25687.t1 | AT5G57060 | 61.957 | 92 | 29 | 1 | 75 | 166 | 5 | 90 | 7.77e-38 | 125 |
| MS.gene25687.t1 | AT1G54217 | 56.164 | 73 | 31 | 1 | 86 | 157 | 2 | 74 | 3.08e-22 | 85.9 |
| MS.gene25687.t1 | AT1G54217 | 56.164 | 73 | 31 | 1 | 86 | 157 | 2 | 74 | 3.08e-22 | 85.9 |
| MS.gene25687.t1 | AT1G54217 | 62.500 | 64 | 23 | 1 | 95 | 157 | 10 | 73 | 9.51e-22 | 84.7 |
| MS.gene25687.t1 | AT1G54217 | 62.500 | 64 | 23 | 1 | 95 | 157 | 10 | 73 | 9.51e-22 | 84.7 |
| MS.gene25687.t1 | AT1G54217 | 62.500 | 64 | 23 | 1 | 95 | 157 | 10 | 73 | 9.51e-22 | 84.7 |
| MS.gene25687.t1 | AT1G54217 | 62.500 | 64 | 23 | 1 | 95 | 157 | 10 | 73 | 9.51e-22 | 84.7 |
| MS.gene25687.t1 | AT1G54217 | 62.500 | 64 | 23 | 1 | 95 | 157 | 10 | 73 | 9.51e-22 | 84.7 |
| MS.gene25687.t1 | AT1G54217 | 62.500 | 64 | 23 | 1 | 95 | 157 | 10 | 73 | 9.51e-22 | 84.7 |
Find 53 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACAATTCTCTATTT+TGG | 0.056794 | 8.1:+6329542 | MS.gene25687:CDS |
| CCCCAGGGAACGGGCGGGGC+TGG | 0.245034 | 8.1:+6329583 | MS.gene25687:CDS |
| TCCCAGCCCCGCCCGTTCCC+TGG | 0.253175 | 8.1:-6329585 | None:intergenic |
| CCCAGCCCCGCCCGTTCCCT+GGG | 0.307231 | 8.1:-6329584 | None:intergenic |
| CCCAGGGAACGGGCGGGGCT+GGG | 0.312102 | 8.1:+6329584 | MS.gene25687:CDS |
| CCATGCTTTGGATGCGGAAT+TGG | 0.323771 | 8.1:+6329387 | MS.gene25687:CDS |
| GTCCTCTGGATCTCTAATTA+AGG | 0.363548 | 8.1:-6329334 | None:intergenic |
| GAAGGACCCCAGGGAACGGG+CGG | 0.380252 | 8.1:+6329577 | MS.gene25687:CDS |
| AGTGGGTTTCTCTTTGCATC+CGG | 0.386234 | 8.1:+6327586 | MS.gene25687:CDS |
| GATAAGCCCCTCCCATGCTT+TGG | 0.389734 | 8.1:+6329375 | MS.gene25687:CDS |
| TCGGAAGGACCCCAGGGAAC+GGG | 0.392848 | 8.1:+6329574 | MS.gene25687:CDS |
| TACAAGGATCTGCTATGGTT+TGG | 0.397232 | 8.1:+6327454 | MS.gene25687:CDS |
| TGCTTCTCTTTCACGTCAGT+GGG | 0.404908 | 8.1:+6327569 | MS.gene25687:CDS |
| AGGACCCCAGGGAACGGGCG+GGG | 0.417190 | 8.1:+6329579 | MS.gene25687:CDS |
| TTTCCCTTTCCGTGAGCCAT+TGG | 0.452477 | 8.1:-6329306 | None:intergenic |
| GATCCAGAGGACTTCCAGTC+AGG | 0.454913 | 8.1:+6329345 | MS.gene25687:CDS |
| TTGCTTCTCTTTCACGTCAG+TGG | 0.458135 | 8.1:+6327568 | MS.gene25687:CDS |
| ATCATTATCGGAAGGACCCC+AGG | 0.469804 | 8.1:+6329567 | MS.gene25687:CDS |
| GATCCAATGGCTCACGGAAA+GGG | 0.471290 | 8.1:+6329303 | MS.gene25687:CDS |
| GATTTATTTGCCCTCCTATG+TGG | 0.489666 | 8.1:+6329516 | MS.gene25687:CDS |
| CTCACTGGAGAAAGTGCAGC+TGG | 0.496562 | 8.1:-6327624 | None:intergenic |
| AGTCCTGACTGGAAGTCCTC+TGG | 0.502119 | 8.1:-6329348 | None:intergenic |
| GTGGGTTTCTCTTTGCATCC+GGG | 0.505434 | 8.1:+6327587 | MS.gene25687:CDS |
| AAGGACCCCAGGGAACGGGC+GGG | 0.511815 | 8.1:+6329578 | MS.gene25687:CDS |
| TCCTCTACAAGGATCTGCTA+TGG | 0.514841 | 8.1:+6327449 | MS.gene25687:CDS |
| CCAATTCCGCATCCAAAGCA+TGG | 0.518285 | 8.1:-6329387 | None:intergenic |
| ATCGGAAGGACCCCAGGGAA+CGG | 0.537686 | 8.1:+6329573 | MS.gene25687:CDS |
| CTTTATGTGGCAGGACAAGC+AGG | 0.542559 | 8.1:+6329279 | MS.gene25687:intron |
| CCCCTCCCATGCTTTGGATG+CGG | 0.543713 | 8.1:+6329381 | MS.gene25687:CDS |
| TTCCGCATCCAAAGCATGGG+AGG | 0.555498 | 8.1:-6329383 | None:intergenic |
| GCACAATGAATGTGCACAGT+AGG | 0.563994 | 8.1:-6327537 | None:intergenic |
| GGATGAAAAGAGATAATAAG+AGG | 0.578320 | 8.1:-6327488 | None:intergenic |
| AGATCCAATGGCTCACGGAA+AGG | 0.578977 | 8.1:+6329302 | MS.gene25687:CDS |
| GCTTATCATAAAGTCCTGAC+TGG | 0.578995 | 8.1:-6329359 | None:intergenic |
| TCCGCATCCAAAGCATGGGA+GGG | 0.588988 | 8.1:-6329382 | None:intergenic |
| GGCTCACTGGATGATTTCAA+AGG | 0.589639 | 8.1:-6327672 | None:intergenic |
| GCTTTGGATGCGGAATTGGA+TGG | 0.591155 | 8.1:+6329391 | MS.gene25687:CDS |
| CAATTCCGCATCCAAAGCAT+GGG | 0.593569 | 8.1:-6329386 | None:intergenic |
| GTTGCATAGAACCACATAGG+AGG | 0.594452 | 8.1:-6329527 | None:intergenic |
| CCGCATCCAAAGCATGGGAG+GGG | 0.606480 | 8.1:-6329381 | None:intergenic |
| AGGACAAGCAGGAGATCCAA+TGG | 0.609106 | 8.1:+6329290 | MS.gene25687:intron |
| GTGCACAGTAGGACAGAAGT+AGG | 0.610636 | 8.1:-6327526 | None:intergenic |
| TGCCTTAATTAGAGATCCAG+AGG | 0.616154 | 8.1:+6329332 | MS.gene25687:CDS |
| TTGCATAGAACCACATAGGA+GGG | 0.616476 | 8.1:-6329526 | None:intergenic |
| TGGATGATTTCAAAGGTGAC+TGG | 0.633133 | 8.1:-6327665 | None:intergenic |
| ACCATAGCAGATCCTTGTAG+AGG | 0.635559 | 8.1:-6327450 | None:intergenic |
| ATTGTTGCATAGAACCACAT+AGG | 0.645975 | 8.1:-6329530 | None:intergenic |
| ATGATTTCAAAGGTGACTGG+TGG | 0.658461 | 8.1:-6327662 | None:intergenic |
| TCATTATCGGAAGGACCCCA+GGG | 0.659027 | 8.1:+6329568 | MS.gene25687:CDS |
| GCAGGAGATCCAATGGCTCA+CGG | 0.665431 | 8.1:+6329297 | MS.gene25687:CDS |
| AGAGATTACAGCAATTGCAG+AGG | 0.673672 | 8.1:-6329609 | None:intergenic |
| CCAGCCCCGCCCGTTCCCTG+GGG | 0.674263 | 8.1:-6329583 | None:intergenic |
| ACTGACGTGAAAGAGAAGCA+AGG | 0.707718 | 8.1:-6327566 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATCATAAAAATAATTGT+TGG | - | chr8.1:6327995-6328014 | None:intergenic | 10.0% |
| !!! | TAATTTTCGTTTTTATTTTT+GGG | - | chr8.1:6328837-6328856 | None:intergenic | 10.0% |
| !!! | TTTTGTAAGAAAAATAAAAT+TGG | - | chr8.1:6329200-6329219 | None:intergenic | 10.0% |
| !! | ATATATTCTACTATAAATAG+AGG | + | chr8.1:6327933-6327952 | MS.gene25687:intron | 15.0% |
| !! | CATATTAAAATGATGAAAAT+TGG | + | chr8.1:6328857-6328876 | MS.gene25687:intron | 15.0% |
| !!! | CAAAACTATTTTATCAAATT+TGG | + | chr8.1:6328022-6328041 | MS.gene25687:intron | 15.0% |
| !!! | GTAATTTTCGTTTTTATTTT+TGG | - | chr8.1:6328838-6328857 | None:intergenic | 15.0% |
| !! | AAATCCTAATATTCACTATT+AGG | + | chr8.1:6327853-6327872 | MS.gene25687:intron | 20.0% |
| !! | AGTAATATGCTAATGATTTA+TGG | + | chr8.1:6329111-6329130 | MS.gene25687:intron | 20.0% |
| !! | ATGTTTATTACCTAGAAAAT+AGG | + | chr8.1:6328707-6328726 | MS.gene25687:intron | 20.0% |
| !! | ATTCATCTATATCGATATAA+TGG | - | chr8.1:6329009-6329028 | None:intergenic | 20.0% |
| !! | TAATAGTGAATATTAGGATT+TGG | - | chr8.1:6327854-6327873 | None:intergenic | 20.0% |
| !! | TAATCCTAATAGTGAATATT+AGG | - | chr8.1:6327860-6327879 | None:intergenic | 20.0% |
| !! | TAGAATTATAGATTAGGATT+TGG | + | chr8.1:6327878-6327897 | MS.gene25687:intron | 20.0% |
| !! | TAGGATTAGAATTATAGATT+AGG | + | chr8.1:6327872-6327891 | MS.gene25687:intron | 20.0% |
| !!! | TTAAATTGCAGATTTCTTTT+TGG | + | chr8.1:6329494-6329513 | MS.gene25687:intron | 20.0% |
| !!! | TTGTCATGTGAATTTTTTAT+AGG | + | chr8.1:6328894-6328913 | MS.gene25687:intron | 20.0% |
| ! | AACTATTAGGAAAGATTTAG+AGG | - | chr8.1:6328291-6328310 | None:intergenic | 25.0% |
| ! | AGAATAGACTCATTAAATAC+TGG | + | chr8.1:6329165-6329184 | MS.gene25687:intron | 25.0% |
| ! | AGACTATAAGAGAAACTATT+AGG | - | chr8.1:6328304-6328323 | None:intergenic | 25.0% |
| ! | ATTACTAGTATTTCAATCCT+AGG | - | chr8.1:6328644-6328663 | None:intergenic | 25.0% |
| ! | CATTGTATTTGATAAATGCA+TGG | - | chr8.1:6328679-6328698 | None:intergenic | 25.0% |
| ! | CTTTCATCAATTATACAAAG+AGG | - | chr8.1:6328390-6328409 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | + | chr8.1:6328251-6328270 | MS.gene25687:intron | 25.0% |
| ! | TAGAGAAAATACAAACAACA+AGG | - | chr8.1:6327756-6327775 | None:intergenic | 25.0% |
| ! | TATAGATTAGGATTTGGATT+AGG | + | chr8.1:6327884-6327903 | MS.gene25687:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | - | chr8.1:6328247-6328266 | None:intergenic | 25.0% |
| ! | TTATGATGCAACAATTACAA+AGG | - | chr8.1:6328357-6328376 | None:intergenic | 25.0% |
| ! | TTTATCAAATTTGGCTAAAC+TGG | + | chr8.1:6328031-6328050 | MS.gene25687:intron | 25.0% |
| !! | ATGCAACAATTCTCTATTTT+GGG | + | chr8.1:6329543-6329562 | MS.gene25687:CDS | 25.0% |
| !! | GATGAAAATTGGACTTTTAA+TGG | + | chr8.1:6328868-6328887 | MS.gene25687:intron | 25.0% |
| !! | TATATCGATATAATGGAAGT+CGG | - | chr8.1:6329002-6329021 | None:intergenic | 25.0% |
| !! | TATGCAACAATTCTCTATTT+TGG | + | chr8.1:6329542-6329561 | MS.gene25687:CDS | 25.0% |
| !! | TCTTATTATCTCTTTTCATC+CGG | + | chr8.1:6327490-6327509 | MS.gene25687:CDS | 25.0% |
| !!! | ACTTAGTAAGCTTTATTTTG+AGG | + | chr8.1:6327807-6327826 | MS.gene25687:intron | 25.0% |
| !!! | CTTAGTAAGCTTTATTTTGA+GGG | + | chr8.1:6327808-6327827 | MS.gene25687:intron | 25.0% |
| !!! | TCACTTTTGTTTGATAACTT+TGG | - | chr8.1:6328489-6328508 | None:intergenic | 25.0% |
| !!! | TCTATTTTGGGAATCATTAT+CGG | + | chr8.1:6329555-6329574 | MS.gene25687:CDS | 25.0% |
| !!! | TTAAGTTTGTTACAATGTGT+TGG | - | chr8.1:6327786-6327805 | None:intergenic | 25.0% |
| !!! | TTAGTAAGCTTTATTTTGAG+GGG | + | chr8.1:6327809-6327828 | MS.gene25687:intron | 25.0% |
| !!! | TTTTCGTTTTTATTTTTGGG+TGG | - | chr8.1:6328834-6328853 | None:intergenic | 25.0% |
| AAGTCATTATAGTTGCTAGT+GGG | - | chr8.1:6328752-6328771 | None:intergenic | 30.0% | |
| AAGTGCAAGTAGTTATTTGA+AGG | - | chr8.1:6329262-6329281 | None:intergenic | 30.0% | |
| AGATCAAAGTCAAAAGACAA+AGG | - | chr8.1:6329040-6329059 | None:intergenic | 30.0% | |
| AGATTTAGAGGTTAATGAGT+TGG | - | chr8.1:6328279-6328298 | None:intergenic | 30.0% | |
| AGTGCAAGTAGTTATTTGAA+GGG | - | chr8.1:6329261-6329280 | None:intergenic | 30.0% | |
| ATAACTACTTGCACTTTATG+TGG | + | chr8.1:6329266-6329285 | MS.gene25687:intron | 30.0% | |
| ATCAAAGTCAAAAGACAAAG+GGG | - | chr8.1:6329038-6329057 | None:intergenic | 30.0% | |
| ATTTGATAAATGCATGGTAG+TGG | - | chr8.1:6328673-6328692 | None:intergenic | 30.0% | |
| GATCAAAGTCAAAAGACAAA+GGG | - | chr8.1:6329039-6329058 | None:intergenic | 30.0% | |
| GGATGAAAAGAGATAATAAG+AGG | - | chr8.1:6327491-6327510 | None:intergenic | 30.0% | |
| TAAGTCATTATAGTTGCTAG+TGG | - | chr8.1:6328753-6328772 | None:intergenic | 30.0% | |
| TCACTATAGCAAAGACAATT+GGG | - | chr8.1:6327696-6327715 | None:intergenic | 30.0% | |
| TTTGATAAATGCATGGTAGT+GGG | - | chr8.1:6328672-6328691 | None:intergenic | 30.0% | |
| ! | GAGATTCTTATTTATAGCCT+AGG | + | chr8.1:6328624-6328643 | MS.gene25687:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr8.1:6328267-6328286 | None:intergenic | 30.0% |
| !! | TTTGATAACTTTGGTTCTAC+TGG | - | chr8.1:6328480-6328499 | None:intergenic | 30.0% |
| !!! | GTCTTTTGACTTTGATCTTA+GGG | + | chr8.1:6329042-6329061 | MS.gene25687:intron | 30.0% |
| !!! | TAGTAAGCTTTATTTTGAGG+GGG | + | chr8.1:6327810-6327829 | MS.gene25687:intron | 30.0% |
| !!! | TGTCTTTTGACTTTGATCTT+AGG | + | chr8.1:6329041-6329060 | MS.gene25687:intron | 30.0% |
| AGTTCTTAACCCAAGAACAA+AGG | + | chr8.1:6328547-6328566 | MS.gene25687:intron | 35.0% | |
| ATTGTTGCATAGAACCACAT+AGG | - | chr8.1:6329533-6329552 | None:intergenic | 35.0% | |
| CTGCACATTATCTCTAAACT+AGG | - | chr8.1:6329147-6329166 | None:intergenic | 35.0% | |
| GGGTTAAGAACTTATAGTCT+TGG | - | chr8.1:6328539-6328558 | None:intergenic | 35.0% | |
| GTCACTATAGCAAAGACAAT+TGG | - | chr8.1:6327697-6327716 | None:intergenic | 35.0% | |
| TCAAAGTCAAAAGACAAAGG+GGG | - | chr8.1:6329037-6329056 | None:intergenic | 35.0% | |
| ! | AATTTTCTCTCTCCTCTACA+AGG | + | chr8.1:6327438-6327457 | MS.gene25687:CDS | 35.0% |
| ! | AGAGCTTTTCCTTTGTTCTT+GGG | - | chr8.1:6328559-6328578 | None:intergenic | 35.0% |
| ! | CATGTTAGTGCCTATTTTCT+AGG | - | chr8.1:6328720-6328739 | None:intergenic | 35.0% |
| ! | CTGGTTGAATCAAATTTTCC+CGG | - | chr8.1:6327608-6327627 | None:intergenic | 35.0% |
| !! | ACTTATAGTCTTGGTTCTAC+CGG | - | chr8.1:6328530-6328549 | None:intergenic | 35.0% |
| !! | CTACTTTGAAGCATTTAGAG+AGG | + | chr8.1:6328778-6328797 | MS.gene25687:intron | 35.0% |
| !! | TTTTGGGAATCATTATCGGA+AGG | + | chr8.1:6329559-6329578 | MS.gene25687:CDS | 35.0% |
| AACAACCAAGCCTTACTAAG+TGG | + | chr8.1:6328196-6328215 | MS.gene25687:intron | 40.0% | |
| ACAACCAAGCCTTACTAAGT+GGG | + | chr8.1:6328197-6328216 | MS.gene25687:intron | 40.0% | |
| AGTAGGACAAAAACGTTGAC+CGG | - | chr8.1:6327512-6327531 | None:intergenic | 40.0% | |
| ATGATTTCAAAGGTGACTGG+TGG | - | chr8.1:6327665-6327684 | None:intergenic | 40.0% | |
| GAAATTGATACGTGACCGAT+AGG | + | chr8.1:6328409-6328428 | MS.gene25687:intron | 40.0% | |
| GATTTATTTGCCCTCCTATG+TGG | + | chr8.1:6329516-6329535 | MS.gene25687:CDS | 40.0% | |
| GCTTATCATAAAGTCCTGAC+TGG | - | chr8.1:6329362-6329381 | None:intergenic | 40.0% | |
| GTCCTCTGGATCTCTAATTA+AGG | - | chr8.1:6329337-6329356 | None:intergenic | 40.0% | |
| TACAAGGATCTGCTATGGTT+TGG | + | chr8.1:6327454-6327473 | MS.gene25687:CDS | 40.0% | |
| TCAAGAGTTCACTAAGCATG+TGG | - | chr8.1:6328927-6328946 | None:intergenic | 40.0% | |
| TCCAGTTGTGCTACCATTTA+CGG | + | chr8.1:6327718-6327737 | MS.gene25687:intron | 40.0% | |
| TGCCTTAATTAGAGATCCAG+AGG | + | chr8.1:6329332-6329351 | MS.gene25687:CDS | 40.0% | |
| TGGATGATTTCAAAGGTGAC+TGG | - | chr8.1:6327668-6327687 | None:intergenic | 40.0% | |
| TTGCATAGAACCACATAGGA+GGG | - | chr8.1:6329529-6329548 | None:intergenic | 40.0% | |
| ! | GACTGGTGGTTTTCGAAAAT+GGG | - | chr8.1:6327651-6327670 | None:intergenic | 40.0% |
| ! | GAGAGCTTTTCCTTTGTTCT+TGG | - | chr8.1:6328560-6328579 | None:intergenic | 40.0% |
| ! | TGACTGGTGGTTTTCGAAAA+TGG | - | chr8.1:6327652-6327671 | None:intergenic | 40.0% |
| ! | TTGAAGCATTTAGAGAGGCT+AGG | + | chr8.1:6328783-6328802 | MS.gene25687:intron | 40.0% |
| ! | TTTTCGAAAATGGGTCTCAC+TGG | - | chr8.1:6327642-6327661 | None:intergenic | 40.0% |
| !! | ATAACTTTGGTTCTACTGGC+AGG | - | chr8.1:6328476-6328495 | None:intergenic | 40.0% |
| !! | TGTTTTCAAGACGGTCCTAT+CGG | - | chr8.1:6328427-6328446 | None:intergenic | 40.0% |
| !! | TTCCTTGCCTGTTTTCAAGA+CGG | - | chr8.1:6328436-6328455 | None:intergenic | 40.0% |
| ACCATAGCAGATCCTTGTAG+AGG | - | chr8.1:6327453-6327472 | None:intergenic | 45.0% | |
| ACTGACGTGAAAGAGAAGCA+AGG | - | chr8.1:6327569-6327588 | None:intergenic | 45.0% | |
| CAACCAAGCCTTACTAAGTG+GGG | + | chr8.1:6328198-6328217 | MS.gene25687:intron | 45.0% | |
| CAATCATAGCAGCGAGCAAA+TGG | - | chr8.1:6329449-6329468 | None:intergenic | 45.0% | |
| CAATTCCGCATCCAAAGCAT+GGG | - | chr8.1:6329389-6329408 | None:intergenic | 45.0% | |
| CACACATGTACTTGTGAGAG+GGG | + | chr8.1:6328083-6328102 | MS.gene25687:intron | 45.0% | |
| CCACACATGTACTTGTGAGA+GGG | + | chr8.1:6328082-6328101 | MS.gene25687:intron | 45.0% | |
| CTACTTGCACTTTATGTGGC+AGG | + | chr8.1:6329270-6329289 | MS.gene25687:intron | 45.0% | |
| GAGGTGAGTGTAGTCTGATT+TGG | + | chr8.1:6327952-6327971 | MS.gene25687:intron | 45.0% | |
| GAGTTCACTAAGCATGTGGA+AGG | - | chr8.1:6328923-6328942 | None:intergenic | 45.0% | |
| GATAGGACCGTCTTGAAAAC+AGG | + | chr8.1:6328426-6328445 | MS.gene25687:intron | 45.0% | |
| GCACAATGAATGTGCACAGT+AGG | - | chr8.1:6327540-6327559 | None:intergenic | 45.0% | |
| GGCTCACTGGATGATTTCAA+AGG | - | chr8.1:6327675-6327694 | None:intergenic | 45.0% | |
| GTAAATGGTAGCACAACTGG+AGG | - | chr8.1:6327719-6327738 | None:intergenic | 45.0% | |
| GTCAAAAGACAAAGGGGGAA+TGG | - | chr8.1:6329032-6329051 | None:intergenic | 45.0% | |
| GTTCTGCACGTCATTTACAG+CGG | + | chr8.1:6328967-6328986 | MS.gene25687:intron | 45.0% | |
| GTTGCATAGAACCACATAGG+AGG | - | chr8.1:6329530-6329549 | None:intergenic | 45.0% | |
| TCCACACATGTACTTGTGAG+AGG | + | chr8.1:6328081-6328100 | MS.gene25687:intron | 45.0% | |
| TCCTCTACAAGGATCTGCTA+TGG | + | chr8.1:6327449-6327468 | MS.gene25687:CDS | 45.0% | |
| TGCTTCTCTTTCACGTCAGT+GGG | + | chr8.1:6327569-6327588 | MS.gene25687:CDS | 45.0% | |
| TTGAGCACGTAACACACTCA+AGG | - | chr8.1:6328330-6328349 | None:intergenic | 45.0% | |
| TTGCTTCTCTTTCACGTCAG+TGG | + | chr8.1:6327568-6327587 | MS.gene25687:CDS | 45.0% | |
| ! | AGTGGGTTTCTCTTTGCATC+CGG | + | chr8.1:6327586-6327605 | MS.gene25687:CDS | 45.0% |
| AGATCCAATGGCTCACGGAA+AGG | + | chr8.1:6329302-6329321 | MS.gene25687:CDS | 50.0% | |
| AGGACAAGCAGGAGATCCAA+TGG | + | chr8.1:6329290-6329309 | MS.gene25687:intron | 50.0% | |
| ATCATTATCGGAAGGACCCC+AGG | + | chr8.1:6329567-6329586 | MS.gene25687:CDS | 50.0% | |
| CAAGCCTTACTAAGTGGGGT+CGG | + | chr8.1:6328202-6328221 | MS.gene25687:intron | 50.0% | |
| CCAATTCCGCATCCAAAGCA+TGG | - | chr8.1:6329390-6329409 | None:intergenic | 50.0% | |
| CCCTCTCACAAGTACATGTG+TGG | - | chr8.1:6328085-6328104 | None:intergenic | 50.0% | |
| CTTTATGTGGCAGGACAAGC+AGG | + | chr8.1:6329279-6329298 | MS.gene25687:intron | 50.0% | |
| GACCGTCTTGAAAACAGGCA+AGG | + | chr8.1:6328431-6328450 | MS.gene25687:intron | 50.0% | |
| GATCCAATGGCTCACGGAAA+GGG | + | chr8.1:6329303-6329322 | MS.gene25687:CDS | 50.0% | |
| GCAAAGACAATTGGGCTCAC+TGG | - | chr8.1:6327688-6327707 | None:intergenic | 50.0% | |
| GCCGTAAATGGTAGCACAAC+TGG | - | chr8.1:6327722-6327741 | None:intergenic | 50.0% | |
| GTCGTAGCTTCAGCCGTAAA+TGG | - | chr8.1:6327734-6327753 | None:intergenic | 50.0% | |
| GTGCACAGTAGGACAGAAGT+AGG | - | chr8.1:6327529-6327548 | None:intergenic | 50.0% | |
| GTGGGTTTCTCTTTGCATCC+GGG | + | chr8.1:6327587-6327606 | MS.gene25687:CDS | 50.0% | |
| TAGCAGCGAGCAAATGGAGA+AGG | - | chr8.1:6329443-6329462 | None:intergenic | 50.0% | |
| TCATTATCGGAAGGACCCCA+GGG | + | chr8.1:6329568-6329587 | MS.gene25687:CDS | 50.0% | |
| TTTCCCTTTCCGTGAGCCAT+TGG | - | chr8.1:6329309-6329328 | None:intergenic | 50.0% | |
| ! | CCATGCTTTGGATGCGGAAT+TGG | + | chr8.1:6329387-6329406 | MS.gene25687:CDS | 50.0% |
| ! | GCTTTGGATGCGGAATTGGA+TGG | + | chr8.1:6329391-6329410 | MS.gene25687:CDS | 50.0% |
| !! | ATAGTCTTGGTTCTACCGGC+AGG | - | chr8.1:6328526-6328545 | None:intergenic | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8.1:6328210-6328229 | MS.gene25687:intron | 55.0% | |
| AGTCCTGACTGGAAGTCCTC+TGG | - | chr8.1:6329351-6329370 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTAAGGCT+TGG | - | chr8.1:6328204-6328223 | None:intergenic | 55.0% | |
| GATAAGCCCCTCCCATGCTT+TGG | + | chr8.1:6329375-6329394 | MS.gene25687:CDS | 55.0% | |
| GATCCAGAGGACTTCCAGTC+AGG | + | chr8.1:6329345-6329364 | MS.gene25687:CDS | 55.0% | |
| GCAGGAGATCCAATGGCTCA+CGG | + | chr8.1:6329297-6329316 | MS.gene25687:CDS | 55.0% | |
| GTAGCCGACCCCACTTAGTA+AGG | - | chr8.1:6328209-6328228 | None:intergenic | 55.0% | |
| TCCGCATCCAAAGCATGGGA+GGG | - | chr8.1:6329385-6329404 | None:intergenic | 55.0% | |
| TTCCGCATCCAAAGCATGGG+AGG | - | chr8.1:6329386-6329405 | None:intergenic | 55.0% | |
| ! | CTCACTGGAGAAAGTGCAGC+TGG | - | chr8.1:6327627-6327646 | None:intergenic | 55.0% |
| !! | TTGGTTCTACTGGCAGGTCG+CGG | - | chr8.1:6328470-6328489 | None:intergenic | 55.0% |
| ATCGGAAGGACCCCAGGGAA+CGG | + | chr8.1:6329573-6329592 | MS.gene25687:CDS | 60.0% | |
| CCGCATCCAAAGCATGGGAG+GGG | - | chr8.1:6329384-6329403 | None:intergenic | 60.0% | |
| CTACTGGCAGGTCGCGGTTA+GGG | - | chr8.1:6328464-6328483 | None:intergenic | 60.0% | |
| TCTACTGGCAGGTCGCGGTT+AGG | - | chr8.1:6328465-6328484 | None:intergenic | 60.0% | |
| ! | CCCCTCCCATGCTTTGGATG+CGG | + | chr8.1:6329381-6329400 | MS.gene25687:CDS | 60.0% |
| !! | TTGGTTCTACCGGCAGGTCG+CGG | - | chr8.1:6328520-6328539 | None:intergenic | 60.0% |
| AGACCCTAACCGCGACCTGC+CGG | + | chr8.1:6328508-6328527 | MS.gene25687:intron | 65.0% | |
| CTACCGGCAGGTCGCGGTTA+GGG | - | chr8.1:6328514-6328533 | None:intergenic | 65.0% | |
| TCGGAAGGACCCCAGGGAAC+GGG | + | chr8.1:6329574-6329593 | MS.gene25687:CDS | 65.0% | |
| TCTACCGGCAGGTCGCGGTT+AGG | - | chr8.1:6328515-6328534 | None:intergenic | 65.0% | |
| AAGGACCCCAGGGAACGGGC+GGG | + | chr8.1:6329578-6329597 | MS.gene25687:CDS | 70.0% | |
| GAAGGACCCCAGGGAACGGG+CGG | + | chr8.1:6329577-6329596 | MS.gene25687:CDS | 70.0% | |
| AGGACCCCAGGGAACGGGCG+GGG | + | chr8.1:6329579-6329598 | MS.gene25687:CDS | 75.0% | |
| ! | CCAGCCCCGCCCGTTCCCTG+GGG | - | chr8.1:6329586-6329605 | None:intergenic | 80.0% |
| ! | CCCAGCCCCGCCCGTTCCCT+GGG | - | chr8.1:6329587-6329606 | None:intergenic | 80.0% |
| ! | CCCAGGGAACGGGCGGGGCT+GGG | + | chr8.1:6329584-6329603 | MS.gene25687:CDS | 80.0% |
| ! | TCCCAGCCCCGCCCGTTCCC+TGG | - | chr8.1:6329588-6329607 | None:intergenic | 80.0% |
| ! | CCCCAGGGAACGGGCGGGGC+TGG | + | chr8.1:6329583-6329602 | MS.gene25687:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6327435 | 6329622 | 6327435 | ID=MS.gene25687 |
| chr8.1 | mRNA | 6327435 | 6329622 | 6327435 | ID=MS.gene25687.t1;Parent=MS.gene25687 |
| chr8.1 | exon | 6327435 | 6327687 | 6327435 | ID=MS.gene25687.t1.exon1;Parent=MS.gene25687.t1 |
| chr8.1 | CDS | 6327435 | 6327687 | 6327435 | ID=cds.MS.gene25687.t1;Parent=MS.gene25687.t1 |
| chr8.1 | exon | 6329292 | 6329418 | 6329292 | ID=MS.gene25687.t1.exon2;Parent=MS.gene25687.t1 |
| chr8.1 | CDS | 6329292 | 6329418 | 6329292 | ID=cds.MS.gene25687.t1;Parent=MS.gene25687.t1 |
| chr8.1 | exon | 6329505 | 6329622 | 6329505 | ID=MS.gene25687.t1.exon3;Parent=MS.gene25687.t1 |
| chr8.1 | CDS | 6329505 | 6329622 | 6329505 | ID=cds.MS.gene25687.t1;Parent=MS.gene25687.t1 |
| Gene Sequence |
| Protein sequence |
