Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25922.t1 | XP_013461036.1 | 97.8 | 415 | 7 | 2 | 1 | 414 | 1 | 414 | 2.60E-232 | 814.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25922.t1 | O48716 | 40.4 | 270 | 145 | 4 | 140 | 409 | 165 | 418 | 8.0e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25922.t1 | A0A072VA53 | 97.8 | 415 | 7 | 2 | 1 | 414 | 1 | 414 | 1.9e-232 | 814.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070761 | MS.gene25922 | PPI |
| MS.gene070760 | MS.gene25922 | PPI |
| MS.gene006731 | MS.gene25922 | PPI |
| MS.gene25922 | MS.gene070758 | PPI |
| MS.gene25922 | MS.gene045436 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25922.t1 | MTR_3g078380 | 97.831 | 415 | 7 | 2 | 1 | 414 | 1 | 414 | 0.0 | 826 |
| MS.gene25922.t1 | MTR_4g106480 | 61.972 | 426 | 125 | 10 | 1 | 414 | 1 | 401 | 2.65e-168 | 478 |
| MS.gene25922.t1 | MTR_5g035980 | 51.699 | 412 | 154 | 13 | 37 | 414 | 48 | 448 | 9.76e-127 | 374 |
| MS.gene25922.t1 | MTR_8g089650 | 45.128 | 390 | 186 | 12 | 30 | 411 | 61 | 430 | 3.25e-101 | 308 |
| MS.gene25922.t1 | MTR_4g104410 | 40.452 | 398 | 186 | 13 | 17 | 410 | 14 | 364 | 3.63e-82 | 256 |
| MS.gene25922.t1 | MTR_1g021590 | 37.317 | 410 | 219 | 12 | 3 | 409 | 57 | 431 | 2.27e-77 | 248 |
| MS.gene25922.t1 | MTR_5g018520 | 39.655 | 348 | 173 | 11 | 69 | 409 | 102 | 419 | 1.78e-75 | 242 |
| MS.gene25922.t1 | MTR_4g068457 | 39.067 | 343 | 188 | 9 | 69 | 409 | 133 | 456 | 1.85e-71 | 233 |
| MS.gene25922.t1 | MTR_2g060070 | 37.760 | 384 | 200 | 15 | 33 | 412 | 34 | 382 | 6.30e-67 | 219 |
| MS.gene25922.t1 | MTR_2g101410 | 32.828 | 396 | 221 | 13 | 29 | 409 | 42 | 407 | 8.60e-49 | 172 |
| MS.gene25922.t1 | MTR_3g110185 | 33.880 | 366 | 202 | 13 | 53 | 411 | 79 | 411 | 1.40e-48 | 177 |
| MS.gene25922.t1 | MTR_4g105700 | 26.449 | 276 | 171 | 13 | 114 | 372 | 327 | 587 | 7.67e-12 | 67.8 |
| MS.gene25922.t1 | MTR_7g086360 | 24.465 | 327 | 183 | 12 | 55 | 372 | 48 | 319 | 8.27e-12 | 66.6 |
| MS.gene25922.t1 | MTR_1g090827 | 26.214 | 206 | 115 | 4 | 176 | 357 | 88 | 280 | 2.11e-11 | 66.6 |
| MS.gene25922.t1 | MTR_4g071130 | 27.861 | 201 | 118 | 6 | 176 | 357 | 88 | 280 | 2.86e-11 | 66.2 |
| MS.gene25922.t1 | MTR_3g088545 | 28.829 | 222 | 121 | 10 | 193 | 408 | 97 | 287 | 2.86e-11 | 65.1 |
| MS.gene25922.t1 | MTR_4g119620 | 29.500 | 200 | 113 | 9 | 211 | 407 | 15 | 189 | 7.03e-11 | 63.5 |
| MS.gene25922.t1 | MTR_4g119620 | 23.460 | 341 | 174 | 13 | 108 | 407 | 27 | 321 | 9.84e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25922.t1 | AT5G50120 | 56.452 | 372 | 136 | 8 | 55 | 413 | 30 | 388 | 3.98e-140 | 405 |
| MS.gene25922.t1 | AT1G24130 | 54.615 | 390 | 146 | 12 | 37 | 414 | 45 | 415 | 1.19e-123 | 364 |
| MS.gene25922.t1 | AT1G24530 | 45.407 | 381 | 181 | 11 | 32 | 411 | 51 | 405 | 3.18e-97 | 297 |
| MS.gene25922.t1 | AT2G26490 | 41.228 | 342 | 176 | 7 | 69 | 409 | 101 | 418 | 8.06e-78 | 248 |
| MS.gene25922.t1 | AT2G26490 | 26.374 | 273 | 151 | 9 | 39 | 302 | 185 | 416 | 8.44e-11 | 63.9 |
| MS.gene25922.t1 | AT3G18950 | 40.173 | 346 | 178 | 9 | 69 | 409 | 143 | 464 | 4.56e-74 | 239 |
| MS.gene25922.t1 | AT3G50390 | 37.366 | 372 | 195 | 13 | 44 | 409 | 85 | 424 | 3.58e-72 | 234 |
| MS.gene25922.t1 | AT1G49450 | 38.286 | 350 | 185 | 9 | 69 | 409 | 139 | 466 | 5.86e-71 | 231 |
| MS.gene25922.t1 | AT3G51930 | 38.421 | 380 | 194 | 14 | 45 | 412 | 44 | 395 | 7.83e-68 | 221 |
| MS.gene25922.t1 | AT4G34380 | 35.696 | 395 | 220 | 11 | 24 | 409 | 87 | 456 | 7.30e-67 | 221 |
| MS.gene25922.t1 | AT1G47610 | 37.500 | 344 | 188 | 9 | 69 | 409 | 29 | 348 | 9.57e-67 | 216 |
| MS.gene25922.t1 | AT1G21650 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 4.85e-12 | 68.6 |
| MS.gene25922.t1 | AT1G21651 | 32.386 | 176 | 98 | 7 | 180 | 352 | 523 | 680 | 5.69e-12 | 68.2 |
| MS.gene25922.t1 | AT3G49660 | 20.950 | 358 | 212 | 12 | 57 | 407 | 19 | 312 | 1.54e-11 | 65.5 |
| MS.gene25922.t1 | AT5G50230 | 24.820 | 278 | 160 | 11 | 98 | 352 | 215 | 466 | 3.39e-11 | 65.5 |
| MS.gene25922.t1 | AT2G43770 | 24.107 | 336 | 188 | 13 | 49 | 372 | 37 | 317 | 3.76e-11 | 64.7 |
| MS.gene25922.t1 | AT1G48630 | 28.270 | 237 | 122 | 9 | 77 | 307 | 31 | 225 | 6.14e-11 | 63.9 |
| MS.gene25922.t1 | AT4G02730 | 29.801 | 151 | 80 | 5 | 261 | 409 | 31 | 157 | 9.05e-11 | 63.2 |
Find 92 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTGTTGTTTGTCTATTT+TGG | 0.194004 | 3.2:-69256481 | MS.gene25922:CDS |
| CTGATAAAACCATAAGAATT+TGG | 0.253308 | 3.2:-69256521 | MS.gene25922:CDS |
| TACCTTCAACCTCAACAATT+AGG | 0.263211 | 3.2:-69257506 | MS.gene25922:CDS |
| AACACCTCTCCAAATTCTTA+TGG | 0.275069 | 3.2:+69256512 | None:intergenic |
| AACTAAAGATTTCACTTGTT+TGG | 0.280735 | 3.2:-69256928 | MS.gene25922:CDS |
| TAGTTTGGACTGTGACATTA+AGG | 0.303285 | 3.2:-69256361 | MS.gene25922:CDS |
| GGTTGTTGTGTCTTCTTCAT+AGG | 0.314132 | 3.2:+69257277 | None:intergenic |
| TCCTGCTATTACTTTGTTGT+TGG | 0.317202 | 3.2:+69257256 | None:intergenic |
| AGCGACGACAACGACGAAAA+TGG | 0.332042 | 3.2:-69256633 | MS.gene25922:CDS |
| TTTAGTCTATAGTGGTAGTT+TGG | 0.333469 | 3.2:-69256376 | MS.gene25922:CDS |
| TCCCTTGCTCTTTCTAAAGA+TGG | 0.347660 | 3.2:-69256999 | MS.gene25922:CDS |
| GTGGGAAGTGTGGTTGATGT+GGG | 0.357984 | 3.2:+69257418 | None:intergenic |
| CAATTCTGGTATCAATGCTT+TGG | 0.382949 | 3.2:-69256733 | MS.gene25922:CDS |
| ACCTTCAACCTCAACAATTA+GGG | 0.384929 | 3.2:-69257505 | MS.gene25922:CDS |
| ATTTGAGGGTTGTGAGGAGG+TGG | 0.385596 | 3.2:+69257399 | None:intergenic |
| TTTGTTTGATTGAATTACTA+AGG | 0.389364 | 3.2:+69257217 | None:intergenic |
| TGCTTGTGATAGATCAATAT+TGG | 0.389864 | 3.2:-69256676 | MS.gene25922:CDS |
| GCGGTTGTTGTTTCTTATGA+TGG | 0.416238 | 3.2:-69256870 | MS.gene25922:CDS |
| GGGACAGAACAATCAAAATC+TGG | 0.425270 | 3.2:-69256953 | MS.gene25922:CDS |
| ACCTTGGAGAAACACAATTC+TGG | 0.431617 | 3.2:-69256747 | MS.gene25922:CDS |
| GGGATTGTGACGAGGGTTGA+GGG | 0.435180 | 3.2:+69257439 | None:intergenic |
| GAGAGTGAGAGAGGAGGTGT+AGG | 0.436172 | 3.2:+69257361 | None:intergenic |
| GTTCTGGTTGGTGCATTAAG+AGG | 0.438267 | 3.2:-69256603 | MS.gene25922:CDS |
| AAGAGTTGTTGTGGGATTTG+AGG | 0.442653 | 3.2:+69257384 | None:intergenic |
| AGAGTTGTTGTGGGATTTGA+GGG | 0.450012 | 3.2:+69257385 | None:intergenic |
| GGTGTAGGAAGAGTTGTTGT+GGG | 0.452599 | 3.2:+69257376 | None:intergenic |
| GTGATAGATCAATATTGGTA+TGG | 0.453135 | 3.2:-69256671 | MS.gene25922:CDS |
| CCATGTTGTGATTTCTCTGT+CGG | 0.456976 | 3.2:+69257310 | None:intergenic |
| ACATTCCCTTGTTGATACCT+TGG | 0.457002 | 3.2:-69256763 | MS.gene25922:CDS |
| ACCTCCTCTCTCACTCTCTT+CGG | 0.458143 | 3.2:-69257356 | MS.gene25922:CDS |
| GGGGATTGTGACGAGGGTTG+AGG | 0.459466 | 3.2:+69257438 | None:intergenic |
| ACCCTAATTGTTGAGGTTGA+AGG | 0.465908 | 3.2:+69257504 | None:intergenic |
| TTGTGAGGAGGTGGGAAGTG+TGG | 0.468399 | 3.2:+69257408 | None:intergenic |
| GATTTCTCTGTCGGATGAAC+CGG | 0.472705 | 3.2:+69257319 | None:intergenic |
| GGTGGGAAGTGTGGTTGATG+TGG | 0.473760 | 3.2:+69257417 | None:intergenic |
| CAACAAAGTAATAGCAGGAA+AGG | 0.477780 | 3.2:-69257252 | MS.gene25922:CDS |
| GATGAATCTATTCTATATTC+CGG | 0.478003 | 3.2:-69256699 | MS.gene25922:CDS |
| AAGACCATAAAATCCGTGTC+TGG | 0.486087 | 3.2:-69257172 | MS.gene25922:CDS |
| AGGTGTAGGAAGAGTTGTTG+TGG | 0.494460 | 3.2:+69257375 | None:intergenic |
| ATTGTTGAGGTTGAAGGTAG+TGG | 0.497025 | 3.2:+69257510 | None:intergenic |
| TGGACTGTGACATTAAGGTT+TGG | 0.498273 | 3.2:-69256356 | MS.gene25922:CDS |
| GGGATTTGAGGGTTGTGAGG+AGG | 0.499008 | 3.2:+69257396 | None:intergenic |
| GGTAGAATAATTTAGATAGC+AGG | 0.502112 | 3.2:+69256321 | None:intergenic |
| TTCCATCTTTAGAAAGAGCA+AGG | 0.503229 | 3.2:+69256997 | None:intergenic |
| TTTGAGGGTTGTGAGGAGGT+GGG | 0.503418 | 3.2:+69257400 | None:intergenic |
| GGTCTTGATGAGCACTGAAA+AGG | 0.506634 | 3.2:+69257189 | None:intergenic |
| TATTGTGTTTAGCTGTTGTG+TGG | 0.515512 | 3.2:-69256566 | MS.gene25922:CDS |
| TTCGGCAAATTCCTCCTCAC+CGG | 0.519290 | 3.2:-69257338 | MS.gene25922:CDS |
| TGATGTGGGGATTGTGACGA+GGG | 0.520065 | 3.2:+69257432 | None:intergenic |
| TGTGGGATTTGAGGGTTGTG+AGG | 0.520701 | 3.2:+69257393 | None:intergenic |
| TGGGAAGTGTGGTTGATGTG+GGG | 0.523842 | 3.2:+69257419 | None:intergenic |
| TATAGCATCATCGTGTGCGT+TGG | 0.524899 | 3.2:+69256896 | None:intergenic |
| AAAGTGTGGAAGAATCTTCA+AGG | 0.525692 | 3.2:-69256813 | MS.gene25922:CDS |
| ATAAGAATTTGGAGAGGTGT+TGG | 0.532264 | 3.2:-69256510 | MS.gene25922:CDS |
| TTGATGTGGGGATTGTGACG+AGG | 0.538964 | 3.2:+69257431 | None:intergenic |
| TTAAACACTTAATTGAACCT+TGG | 0.539526 | 3.2:+69256451 | None:intergenic |
| GGAGGCTGCGTTGTGAAGTG+AGG | 0.545239 | 3.2:+69257474 | None:intergenic |
| GTAGTGGTTGGAGTGAGATG+AGG | 0.547014 | 3.2:+69257526 | None:intergenic |
| TTGAGGTTGAAGGTAGTGGT+TGG | 0.548826 | 3.2:+69257514 | None:intergenic |
| CGTTGGTTAATTTCCAGACA+CGG | 0.549331 | 3.2:+69257159 | None:intergenic |
| TATTGATCTATCACAAGCAC+CGG | 0.554977 | 3.2:+69256680 | None:intergenic |
| TGATAGATCAATATTGGTAT+GGG | 0.557167 | 3.2:-69256670 | MS.gene25922:CDS |
| ATTGTGTTTAGCTGTTGTGT+GGG | 0.558122 | 3.2:-69256565 | MS.gene25922:CDS |
| ACCAACAACAAAGTAATAGC+AGG | 0.559319 | 3.2:-69257257 | MS.gene25922:CDS |
| AACAAAGTAATAGCAGGAAA+GGG | 0.563035 | 3.2:-69257251 | MS.gene25922:CDS |
| TTGTGACGAGGGTTGAGGGA+AGG | 0.567186 | 3.2:+69257443 | None:intergenic |
| GAAGCACGGTCACCAAGTGT+TGG | 0.569276 | 3.2:+69257104 | None:intergenic |
| ACCAGAATTGTGTTTCTCCA+AGG | 0.570524 | 3.2:+69256746 | None:intergenic |
| TGTTGTGTCTTCTTCATAGG+TGG | 0.573502 | 3.2:+69257280 | None:intergenic |
| GAGGCTGCGTTGTGAAGTGA+GGG | 0.579525 | 3.2:+69257475 | None:intergenic |
| TGTGTCTACGAATTTGGACA+TGG | 0.587510 | 3.2:+69257060 | None:intergenic |
| GTCTTGATGAGCACTGAAAA+GGG | 0.588648 | 3.2:+69257190 | None:intergenic |
| ATGCACGTGGGTTCATCATG+TGG | 0.591120 | 3.2:-69257033 | MS.gene25922:CDS |
| GTAGCAACACTTCCAACACT+TGG | 0.604456 | 3.2:-69257116 | MS.gene25922:CDS |
| TCCATCTTTAGAAAGAGCAA+GGG | 0.605319 | 3.2:+69256998 | None:intergenic |
| TTTGCCGAAGAGAGTGAGAG+AGG | 0.610237 | 3.2:+69257352 | None:intergenic |
| GAGGTTGACCCTAATTGTTG+AGG | 0.610635 | 3.2:+69257497 | None:intergenic |
| TGTCGGATGAACCGGTGAGG+AGG | 0.611181 | 3.2:+69257327 | None:intergenic |
| ATGGAATATCACTATGACAG+TGG | 0.625164 | 3.2:-69257554 | MS.gene25922:CDS |
| CTGATAAAAGAATCAAAGTG+TGG | 0.636026 | 3.2:-69256827 | MS.gene25922:CDS |
| TTGGTATGGGAGAAAGAAGA+CGG | 0.639629 | 3.2:-69256657 | MS.gene25922:CDS |
| TGAGGGAAGGAACTGAGAGG+AGG | 0.642268 | 3.2:+69257456 | None:intergenic |
| GTTTCTCCAAGGTATCAACA+AGG | 0.648819 | 3.2:+69256757 | None:intergenic |
| GCCGAAGAGAGTGAGAGAGG+AGG | 0.649195 | 3.2:+69257355 | None:intergenic |
| TATGATGGAACTGTCTACAG+TGG | 0.654469 | 3.2:-69256855 | MS.gene25922:CDS |
| CTCTGTCGGATGAACCGGTG+AGG | 0.659870 | 3.2:+69257324 | None:intergenic |
| CCGACAGAGAAATCACAACA+TGG | 0.662721 | 3.2:-69257310 | MS.gene25922:CDS |
| GCTGCGTTGTGAAGTGAGGG+AGG | 0.663813 | 3.2:+69257478 | None:intergenic |
| TTTCTCCAAGGTATCAACAA+GGG | 0.666471 | 3.2:+69256758 | None:intergenic |
| GGTTGAGGGAAGGAACTGAG+AGG | 0.692947 | 3.2:+69257453 | None:intergenic |
| AAAACCATAAGAATTTGGAG+AGG | 0.694065 | 3.2:-69256516 | MS.gene25922:CDS |
| ACACGATGATGCTATAAACG+CGG | 0.742968 | 3.2:-69256889 | MS.gene25922:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTGATTGAATTACTA+AGG | + | chr3.2:69256672-69256691 | None:intergenic | 20.0% |
| !!! | TTATTGTTGTTTGTCTATTT+TGG | - | chr3.2:69257405-69257424 | MS.gene25922:CDS | 20.0% |
| ! | AACTAAAGATTTCACTTGTT+TGG | - | chr3.2:69256958-69256977 | MS.gene25922:CDS | 25.0% |
| ! | CTGATAAAACCATAAGAATT+TGG | - | chr3.2:69257365-69257384 | MS.gene25922:CDS | 25.0% |
| ! | GATGAATCTATTCTATATTC+CGG | - | chr3.2:69257187-69257206 | MS.gene25922:CDS | 25.0% |
| ! | TGATAGATCAATATTGGTAT+GGG | - | chr3.2:69257216-69257235 | MS.gene25922:CDS | 25.0% |
| ! | TTAAACACTTAATTGAACCT+TGG | + | chr3.2:69257438-69257457 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTGTCTACGAATT+TGG | + | chr3.2:69256835-69256854 | None:intergenic | 25.0% |
| !!! | GTTTTTTGGGATTAAGATTT+TGG | + | chr3.2:69256807-69256826 | None:intergenic | 25.0% |
| AAAACCATAAGAATTTGGAG+AGG | - | chr3.2:69257370-69257389 | MS.gene25922:CDS | 30.0% | |
| AACAAAGTAATAGCAGGAAA+GGG | - | chr3.2:69256635-69256654 | MS.gene25922:CDS | 30.0% | |
| CCACTATAGACTAAAAAAGA+TGG | + | chr3.2:69257505-69257524 | None:intergenic | 30.0% | |
| CTGATAAAAGAATCAAAGTG+TGG | - | chr3.2:69257059-69257078 | MS.gene25922:CDS | 30.0% | |
| GTGATAGATCAATATTGGTA+TGG | - | chr3.2:69257215-69257234 | MS.gene25922:CDS | 30.0% | |
| TGCTTGTGATAGATCAATAT+TGG | - | chr3.2:69257210-69257229 | MS.gene25922:CDS | 30.0% | |
| TTTAGTCTATAGTGGTAGTT+TGG | - | chr3.2:69257510-69257529 | MS.gene25922:CDS | 30.0% | |
| ! | AGTTTTTGTACTCTGTTTCA+TGG | - | chr3.2:69256912-69256931 | MS.gene25922:CDS | 30.0% |
| ! | CTACATGAGTGTATTTTGTT+TGG | + | chr3.2:69256754-69256773 | None:intergenic | 30.0% |
| ! | GTTTTTGTACTCTGTTTCAT+GGG | - | chr3.2:69256913-69256932 | MS.gene25922:CDS | 30.0% |
| !! | TGTTGTTTGTCTATTTTGGA+AGG | - | chr3.2:69257409-69257428 | MS.gene25922:CDS | 30.0% |
| !!! | CCATCTTTTTTAGTCTATAG+TGG | - | chr3.2:69257502-69257521 | MS.gene25922:CDS | 30.0% |
| !!! | GAATTTGGACATGGTTTTTT+GGG | + | chr3.2:69256820-69256839 | None:intergenic | 30.0% |
| AAAGTGTGGAAGAATCTTCA+AGG | - | chr3.2:69257073-69257092 | MS.gene25922:CDS | 35.0% | |
| AACACCTCTCCAAATTCTTA+TGG | + | chr3.2:69257377-69257396 | None:intergenic | 35.0% | |
| ACCAACAACAAAGTAATAGC+AGG | - | chr3.2:69256629-69256648 | MS.gene25922:CDS | 35.0% | |
| ACCTTCAACCTCAACAATTA+GGG | - | chr3.2:69256381-69256400 | MS.gene25922:CDS | 35.0% | |
| ATGGAATATCACTATGACAG+TGG | - | chr3.2:69256332-69256351 | MS.gene25922:CDS | 35.0% | |
| ATTGTGTTTAGCTGTTGTGT+GGG | - | chr3.2:69257321-69257340 | MS.gene25922:CDS | 35.0% | |
| CAACAAAGTAATAGCAGGAA+AGG | - | chr3.2:69256634-69256653 | MS.gene25922:CDS | 35.0% | |
| CAACGACGAAAATGGAAAAA+TGG | - | chr3.2:69257261-69257280 | MS.gene25922:CDS | 35.0% | |
| CAATTCTGGTATCAATGCTT+TGG | - | chr3.2:69257153-69257172 | MS.gene25922:CDS | 35.0% | |
| CGAAAATGGAAAAATGGTTC+TGG | - | chr3.2:69257267-69257286 | MS.gene25922:CDS | 35.0% | |
| TACCTTCAACCTCAACAATT+AGG | - | chr3.2:69256380-69256399 | MS.gene25922:CDS | 35.0% | |
| TAGACACAAAAAATGCACGT+GGG | - | chr3.2:69256841-69256860 | MS.gene25922:CDS | 35.0% | |
| TAGTTTGGACTGTGACATTA+AGG | - | chr3.2:69257525-69257544 | MS.gene25922:CDS | 35.0% | |
| TATTGATCTATCACAAGCAC+CGG | + | chr3.2:69257209-69257228 | None:intergenic | 35.0% | |
| TATTGTGTTTAGCTGTTGTG+TGG | - | chr3.2:69257320-69257339 | MS.gene25922:CDS | 35.0% | |
| ! | ATAAGAATTTGGAGAGGTGT+TGG | - | chr3.2:69257376-69257395 | MS.gene25922:CDS | 35.0% |
| ! | ATTTCCAGACACGGATTTTA+TGG | + | chr3.2:69256721-69256740 | None:intergenic | 35.0% |
| ! | TCCATCTTTAGAAAGAGCAA+GGG | + | chr3.2:69256891-69256910 | None:intergenic | 35.0% |
| ! | TCCTGCTATTACTTTGTTGT+TGG | + | chr3.2:69256633-69256652 | None:intergenic | 35.0% |
| ! | TTCCATCTTTAGAAAGAGCA+AGG | + | chr3.2:69256892-69256911 | None:intergenic | 35.0% |
| ! | TTTCTCCAAGGTATCAACAA+GGG | + | chr3.2:69257131-69257150 | None:intergenic | 35.0% |
| !! | AATGGAAAAATGGTTCTGGT+TGG | - | chr3.2:69257271-69257290 | MS.gene25922:CDS | 35.0% |
| !! | AGTGTATTTTGTTTGGTCGT+TGG | + | chr3.2:69256747-69256766 | None:intergenic | 35.0% |
| !! | GGATTAAGATTTTGGAAGCA+CGG | + | chr3.2:69256799-69256818 | None:intergenic | 35.0% |
| !!! | CGAATTTGGACATGGTTTTT+TGG | + | chr3.2:69256821-69256840 | None:intergenic | 35.0% |
| AAGACCATAAAATCCGTGTC+TGG | - | chr3.2:69256714-69256733 | MS.gene25922:CDS | 40.0% | |
| AAGAGTTGTTGTGGGATTTG+AGG | + | chr3.2:69256505-69256524 | None:intergenic | 40.0% | |
| ACACGATGATGCTATAAACG+CGG | - | chr3.2:69256997-69257016 | MS.gene25922:CDS | 40.0% | |
| ACATTCCCTTGTTGATACCT+TGG | - | chr3.2:69257123-69257142 | MS.gene25922:CDS | 40.0% | |
| ACCAGAATTGTGTTTCTCCA+AGG | + | chr3.2:69257143-69257162 | None:intergenic | 40.0% | |
| ACCCTAATTGTTGAGGTTGA+AGG | + | chr3.2:69256385-69256404 | None:intergenic | 40.0% | |
| ACCTTGGAGAAACACAATTC+TGG | - | chr3.2:69257139-69257158 | MS.gene25922:CDS | 40.0% | |
| AGAGTTGTTGTGGGATTTGA+GGG | + | chr3.2:69256504-69256523 | None:intergenic | 40.0% | |
| ATTGTTGAGGTTGAAGGTAG+TGG | + | chr3.2:69256379-69256398 | None:intergenic | 40.0% | |
| CCATGTTGTGATTTCTCTGT+CGG | + | chr3.2:69256579-69256598 | None:intergenic | 40.0% | |
| GGGACAGAACAATCAAAATC+TGG | - | chr3.2:69256933-69256952 | MS.gene25922:CDS | 40.0% | |
| GGTTGTTGTGTCTTCTTCAT+AGG | + | chr3.2:69256612-69256631 | None:intergenic | 40.0% | |
| GTAGACACAAAAAATGCACG+TGG | - | chr3.2:69256840-69256859 | MS.gene25922:CDS | 40.0% | |
| TGGACTGTGACATTAAGGTT+TGG | - | chr3.2:69257530-69257549 | MS.gene25922:CDS | 40.0% | |
| TGTGTCTACGAATTTGGACA+TGG | + | chr3.2:69256829-69256848 | None:intergenic | 40.0% | |
| TGTTGTGTCTTCTTCATAGG+TGG | + | chr3.2:69256609-69256628 | None:intergenic | 40.0% | |
| TTGGTATGGGAGAAAGAAGA+CGG | - | chr3.2:69257229-69257248 | MS.gene25922:CDS | 40.0% | |
| ! | CGTTGGTTAATTTCCAGACA+CGG | + | chr3.2:69256730-69256749 | None:intergenic | 40.0% |
| ! | GTTTCTCCAAGGTATCAACA+AGG | + | chr3.2:69257132-69257151 | None:intergenic | 40.0% |
| ! | TATGATGGAACTGTCTACAG+TGG | - | chr3.2:69257031-69257050 | MS.gene25922:CDS | 40.0% |
| ! | TCCCTTGCTCTTTCTAAAGA+TGG | - | chr3.2:69256887-69256906 | MS.gene25922:CDS | 40.0% |
| !! | GCGGTTGTTGTTTCTTATGA+TGG | - | chr3.2:69257016-69257035 | MS.gene25922:CDS | 40.0% |
| !! | GTCTTGATGAGCACTGAAAA+GGG | + | chr3.2:69256699-69256718 | None:intergenic | 40.0% |
| !! | TCTATTTTGGAAGGACACCA+AGG | - | chr3.2:69257418-69257437 | MS.gene25922:CDS | 40.0% |
| AGGTGTAGGAAGAGTTGTTG+TGG | + | chr3.2:69256514-69256533 | None:intergenic | 45.0% | |
| CCGACAGAGAAATCACAACA+TGG | - | chr3.2:69256576-69256595 | MS.gene25922:CDS | 45.0% | |
| GAGGTTGACCCTAATTGTTG+AGG | + | chr3.2:69256392-69256411 | None:intergenic | 45.0% | |
| GATTTCTCTGTCGGATGAAC+CGG | + | chr3.2:69256570-69256589 | None:intergenic | 45.0% | |
| GGTGTAGGAAGAGTTGTTGT+GGG | + | chr3.2:69256513-69256532 | None:intergenic | 45.0% | |
| GTAGCAACACTTCCAACACT+TGG | - | chr3.2:69256770-69256789 | MS.gene25922:CDS | 45.0% | |
| TATAGCATCATCGTGTGCGT+TGG | + | chr3.2:69256993-69257012 | None:intergenic | 45.0% | |
| ! | GTGTGGGATTTTGTGTGTAG+TGG | - | chr3.2:69257337-69257356 | MS.gene25922:CDS | 45.0% |
| ! | GTTCTGGTTGGTGCATTAAG+AGG | - | chr3.2:69257283-69257302 | MS.gene25922:CDS | 45.0% |
| ! | TTGAGGTTGAAGGTAGTGGT+TGG | + | chr3.2:69256375-69256394 | None:intergenic | 45.0% |
| !! | GGTCTTGATGAGCACTGAAA+AGG | + | chr3.2:69256700-69256719 | None:intergenic | 45.0% |
| ACCTCCTCTCTCACTCTCTT+CGG | - | chr3.2:69256530-69256549 | MS.gene25922:CDS | 50.0% | |
| AGCGACGACAACGACGAAAA+TGG | - | chr3.2:69257253-69257272 | MS.gene25922:CDS | 50.0% | |
| ATGCACGTGGGTTCATCATG+TGG | - | chr3.2:69256853-69256872 | MS.gene25922:CDS | 50.0% | |
| ATTTGAGGGTTGTGAGGAGG+TGG | + | chr3.2:69256490-69256509 | None:intergenic | 50.0% | |
| GTAGTGGTTGGAGTGAGATG+AGG | + | chr3.2:69256363-69256382 | None:intergenic | 50.0% | |
| TGATGTGGGGATTGTGACGA+GGG | + | chr3.2:69256457-69256476 | None:intergenic | 50.0% | |
| TGTGGGATTTGAGGGTTGTG+AGG | + | chr3.2:69256496-69256515 | None:intergenic | 50.0% | |
| TTCGGCAAATTCCTCCTCAC+CGG | - | chr3.2:69256548-69256567 | MS.gene25922:CDS | 50.0% | |
| TTGATGTGGGGATTGTGACG+AGG | + | chr3.2:69256458-69256477 | None:intergenic | 50.0% | |
| TTTGAGGGTTGTGAGGAGGT+GGG | + | chr3.2:69256489-69256508 | None:intergenic | 50.0% | |
| TTTGCCGAAGAGAGTGAGAG+AGG | + | chr3.2:69256537-69256556 | None:intergenic | 50.0% | |
| ! | GTGGGAAGTGTGGTTGATGT+GGG | + | chr3.2:69256471-69256490 | None:intergenic | 50.0% |
| ! | TGGGAAGTGTGGTTGATGTG+GGG | + | chr3.2:69256470-69256489 | None:intergenic | 50.0% |
| GAAGCACGGTCACCAAGTGT+TGG | + | chr3.2:69256785-69256804 | None:intergenic | 55.0% | |
| GAGGCTGCGTTGTGAAGTGA+GGG | + | chr3.2:69256414-69256433 | None:intergenic | 55.0% | |
| GGGATTGTGACGAGGGTTGA+GGG | + | chr3.2:69256450-69256469 | None:intergenic | 55.0% | |
| GGGATTTGAGGGTTGTGAGG+AGG | + | chr3.2:69256493-69256512 | None:intergenic | 55.0% | |
| GGTTGAGGGAAGGAACTGAG+AGG | + | chr3.2:69256436-69256455 | None:intergenic | 55.0% | |
| TGAGGGAAGGAACTGAGAGG+AGG | + | chr3.2:69256433-69256452 | None:intergenic | 55.0% | |
| TTGTGACGAGGGTTGAGGGA+AGG | + | chr3.2:69256446-69256465 | None:intergenic | 55.0% | |
| TTGTGAGGAGGTGGGAAGTG+TGG | + | chr3.2:69256481-69256500 | None:intergenic | 55.0% | |
| ! | GAGAGTGAGAGAGGAGGTGT+AGG | + | chr3.2:69256528-69256547 | None:intergenic | 55.0% |
| ! | GGTGGGAAGTGTGGTTGATG+TGG | + | chr3.2:69256472-69256491 | None:intergenic | 55.0% |
| CTCTGTCGGATGAACCGGTG+AGG | + | chr3.2:69256565-69256584 | None:intergenic | 60.0% | |
| GCCGAAGAGAGTGAGAGAGG+AGG | + | chr3.2:69256534-69256553 | None:intergenic | 60.0% | |
| GCTGCGTTGTGAAGTGAGGG+AGG | + | chr3.2:69256411-69256430 | None:intergenic | 60.0% | |
| GGAGGCTGCGTTGTGAAGTG+AGG | + | chr3.2:69256415-69256434 | None:intergenic | 60.0% | |
| GGGGATTGTGACGAGGGTTG+AGG | + | chr3.2:69256451-69256470 | None:intergenic | 60.0% | |
| TGTCGGATGAACCGGTGAGG+AGG | + | chr3.2:69256562-69256581 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69256332 | 69257576 | 69256332 | ID=MS.gene25922 |
| chr3.2 | mRNA | 69256332 | 69257576 | 69256332 | ID=MS.gene25922.t1;Parent=MS.gene25922 |
| chr3.2 | exon | 69256332 | 69257576 | 69256332 | ID=MS.gene25922.t1.exon1;Parent=MS.gene25922.t1 |
| chr3.2 | CDS | 69256332 | 69257576 | 69256332 | ID=cds.MS.gene25922.t1;Parent=MS.gene25922.t1 |
| Gene Sequence |
| Protein sequence |
