Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26034.t1 | XP_013441370.1 | 93.7 | 63 | 4 | 0 | 1 | 63 | 20 | 82 | 1.90E-22 | 114.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26034.t1 | O03982 | 50.9 | 57 | 27 | 1 | 1 | 56 | 20 | 76 | 1.0e-08 | 60.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26034.t1 | I3T0M8 | 93.7 | 63 | 4 | 0 | 1 | 63 | 20 | 82 | 1.4e-22 | 114.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050251 | MS.gene26034 | 0.819567 | 1.09E-52 | -1.69E-46 |
MS.gene055358 | MS.gene26034 | 0.803169 | 3.96E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26034.t1 | MTR_7g451200 | 93.651 | 63 | 4 | 0 | 1 | 63 | 20 | 82 | 1.37e-36 | 119 |
MS.gene26034.t1 | MTR_1173s0010 | 87.143 | 70 | 9 | 0 | 1 | 70 | 20 | 89 | 2.21e-36 | 118 |
MS.gene26034.t1 | MTR_3g434960 | 84.286 | 70 | 11 | 0 | 1 | 70 | 20 | 89 | 3.46e-35 | 115 |
MS.gene26034.t1 | MTR_3g434890 | 84.286 | 70 | 11 | 0 | 1 | 70 | 20 | 89 | 5.14e-35 | 115 |
MS.gene26034.t1 | MTR_7g451210 | 85.714 | 63 | 9 | 0 | 1 | 63 | 20 | 82 | 6.07e-32 | 107 |
MS.gene26034.t1 | MTR_3g435000 | 72.973 | 74 | 19 | 1 | 1 | 74 | 24 | 96 | 7.22e-32 | 107 |
MS.gene26034.t1 | MTR_3g434920 | 82.258 | 62 | 11 | 0 | 9 | 70 | 2 | 63 | 2.67e-29 | 100 |
MS.gene26034.t1 | MTR_6g049260 | 70.968 | 62 | 18 | 0 | 1 | 62 | 20 | 81 | 2.09e-26 | 93.6 |
MS.gene26034.t1 | MTR_1g099800 | 70.000 | 50 | 15 | 0 | 1 | 50 | 20 | 69 | 3.00e-19 | 75.9 |
MS.gene26034.t1 | MTR_1g099810 | 70.000 | 50 | 15 | 0 | 1 | 50 | 1 | 50 | 5.31e-19 | 75.1 |
MS.gene26034.t1 | MTR_1g099810 | 70.000 | 50 | 15 | 0 | 1 | 50 | 20 | 69 | 8.64e-19 | 75.1 |
MS.gene26034.t1 | MTR_6g049320 | 70.588 | 51 | 15 | 0 | 1 | 51 | 20 | 70 | 1.76e-18 | 73.6 |
MS.gene26034.t1 | MTR_6g049320 | 70.588 | 51 | 15 | 0 | 1 | 51 | 50 | 100 | 2.22e-18 | 74.3 |
MS.gene26034.t1 | MTR_6g049280 | 68.627 | 51 | 16 | 0 | 1 | 51 | 20 | 70 | 3.20e-18 | 73.2 |
MS.gene26034.t1 | MTR_6g049280 | 68.627 | 51 | 16 | 0 | 1 | 51 | 50 | 100 | 5.03e-18 | 73.2 |
MS.gene26034.t1 | MTR_6g051680 | 64.000 | 50 | 18 | 0 | 1 | 50 | 20 | 69 | 3.28e-17 | 70.1 |
MS.gene26034.t1 | MTR_6g051690 | 64.000 | 50 | 18 | 0 | 1 | 50 | 20 | 69 | 8.56e-17 | 69.7 |
MS.gene26034.t1 | MTR_8g098915 | 56.604 | 53 | 23 | 0 | 1 | 53 | 1 | 53 | 2.54e-15 | 65.1 |
MS.gene26034.t1 | MTR_1g099815 | 66.000 | 50 | 16 | 1 | 1 | 50 | 20 | 68 | 3.28e-15 | 65.5 |
MS.gene26034.t1 | MTR_1g102240 | 66.000 | 50 | 16 | 1 | 1 | 50 | 20 | 68 | 3.73e-15 | 65.5 |
MS.gene26034.t1 | MTR_8g098915 | 56.604 | 53 | 23 | 0 | 1 | 53 | 20 | 72 | 4.77e-15 | 65.1 |
MS.gene26034.t1 | MTR_1g099640 | 61.224 | 49 | 19 | 0 | 1 | 49 | 20 | 68 | 2.67e-14 | 63.2 |
MS.gene26034.t1 | MTR_8g028615 | 53.191 | 47 | 22 | 0 | 3 | 49 | 22 | 68 | 3.99e-12 | 58.2 |
MS.gene26034.t1 | MTR_7g079110 | 51.020 | 49 | 24 | 0 | 1 | 49 | 20 | 68 | 5.83e-12 | 58.2 |
MS.gene26034.t1 | MTR_0795s0020 | 61.538 | 52 | 14 | 1 | 1 | 52 | 20 | 65 | 7.36e-12 | 57.0 |
MS.gene26034.t1 | MTR_1g099810 | 69.697 | 33 | 10 | 0 | 18 | 50 | 2 | 34 | 3.91e-11 | 54.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26034.t1 | AT1G01490 | 52.941 | 51 | 23 | 1 | 1 | 50 | 47 | 97 | 2.35e-11 | 57.0 |
MS.gene26034.t1 | AT1G01490 | 52.941 | 51 | 23 | 1 | 1 | 50 | 20 | 70 | 2.86e-11 | 56.2 |
MS.gene26034.t1 | AT1G01490 | 52.941 | 51 | 23 | 1 | 1 | 50 | 20 | 70 | 2.86e-11 | 56.2 |
Find 12 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTGCGCACTGCCTTTAC+TGG | 0.171682 | 7.3:-54272668 | None:intergenic |
GATAAGAAATTGACATTATC+GGG | 0.324245 | 7.3:+54272635 | MS.gene26034:CDS |
AAGACAGCATCTAGCCTTCC+AGG | 0.337922 | 7.3:+54272023 | MS.gene26034:CDS |
AGTGATGTCTTTGCATGATT+TGG | 0.351298 | 7.3:-54272971 | None:intergenic |
AGATAAGAAATTGACATTAT+CGG | 0.386881 | 7.3:+54272634 | MS.gene26034:CDS |
ACCTAGAATTGGATTCTGCT+TGG | 0.465285 | 7.3:+54272941 | MS.gene26034:intron |
ACCTCTAAAAGATGAGAAGA+AGG | 0.498625 | 7.3:+54272727 | MS.gene26034:CDS |
CAAACTGAAATAGTATCGAT+TGG | 0.553477 | 7.3:+54272704 | MS.gene26034:CDS |
ATTCAATATATATACCTGGA+AGG | 0.607776 | 7.3:-54272037 | None:intergenic |
ATAAGAAATTGACATTATCG+GGG | 0.634485 | 7.3:+54272636 | MS.gene26034:CDS |
ATGTCTTTGCATGATTTGGA+AGG | 0.637280 | 7.3:-54272967 | None:intergenic |
TAAGAAATTGACATTATCGG+GGG | 0.672768 | 7.3:+54272637 | MS.gene26034:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAGTAAAAATAAAATTCA+AGG | - | chr7.3:54272917-54272936 | None:intergenic | 10.0% |
!! | TAAATTACAATAATTTGATA+AGG | + | chr7.3:54272361-54272380 | MS.gene26034:intron | 10.0% |
!! | AAAATTAAAATCAATCATGA+TGG | - | chr7.3:54272322-54272341 | None:intergenic | 15.0% |
!!! | AATTTTGAAAATATTGTTGT+GGG | - | chr7.3:54272823-54272842 | None:intergenic | 15.0% |
!!! | TAATTTTGAAAATATTGTTG+TGG | - | chr7.3:54272824-54272843 | None:intergenic | 15.0% |
!! | AGATAAGAAATTGACATTAT+CGG | + | chr7.3:54272634-54272653 | MS.gene26034:CDS | 20.0% |
!! | TGAAATTCAATATATATACC+TGG | - | chr7.3:54272044-54272063 | None:intergenic | 20.0% |
!! | TTACATGATTAAGTTATAGA+TGG | + | chr7.3:54272103-54272122 | MS.gene26034:intron | 20.0% |
!!! | ATTTTGAAAATATTGTTGTG+GGG | - | chr7.3:54272822-54272841 | None:intergenic | 20.0% |
!!! | TAACTAATGCTGAAATTTTT+TGG | - | chr7.3:54272135-54272154 | None:intergenic | 20.0% |
!!! | TTGTCTTTTTATTTACACAA+AGG | - | chr7.3:54272540-54272559 | None:intergenic | 20.0% |
!!! | TTTTTTCTTTCTATTTTGCA+GGG | + | chr7.3:54272585-54272604 | MS.gene26034:intron | 20.0% |
!!! | TTTTTTTCTTTCTATTTTGC+AGG | + | chr7.3:54272584-54272603 | MS.gene26034:intron | 20.0% |
! | AAGTTAGATTGTGTTAGAAA+TGG | - | chr7.3:54272388-54272407 | None:intergenic | 25.0% |
! | AATGAATCATTTGTGTTAGA+TGG | - | chr7.3:54272564-54272583 | None:intergenic | 25.0% |
! | ACATTTGATATGTTTAGTTG+CGG | - | chr7.3:54272266-54272285 | None:intergenic | 25.0% |
! | ATAAGAAATTGACATTATCG+GGG | + | chr7.3:54272636-54272655 | MS.gene26034:CDS | 25.0% |
! | ATTCAATATATATACCTGGA+AGG | - | chr7.3:54272040-54272059 | None:intergenic | 25.0% |
! | CATCTGATAATAAAATGGAT+AGG | - | chr7.3:54272798-54272817 | None:intergenic | 25.0% |
! | GATAAGAAATTGACATTATC+GGG | + | chr7.3:54272635-54272654 | MS.gene26034:CDS | 25.0% |
! | GTGAAGATGATAAAAGATTA+CGG | - | chr7.3:54272291-54272310 | None:intergenic | 25.0% |
! | TACTTTATATGACCTAGAAT+TGG | + | chr7.3:54272930-54272949 | MS.gene26034:intron | 25.0% |
! | TTGGCTTACAATTAGAAAAT+CGG | + | chr7.3:54272162-54272181 | MS.gene26034:intron | 25.0% |
!! | ATTTTCTAATTGTAAGCCAA+CGG | - | chr7.3:54272162-54272181 | None:intergenic | 25.0% |
!! | TTTTTCTTTCTATTTTGCAG+GGG | + | chr7.3:54272586-54272605 | MS.gene26034:intron | 25.0% |
!!! | TAGGTTTCAAAGTATTGAAT+TGG | - | chr7.3:54272779-54272798 | None:intergenic | 25.0% |
!!! | TTAACTACCATTAGGTTTTT+TGG | + | chr7.3:54272191-54272210 | MS.gene26034:intron | 25.0% |
GAAATGACCAAAAAACCTAA+TGG | - | chr7.3:54272201-54272220 | None:intergenic | 30.0% | |
TAAGAAATTGACATTATCGG+GGG | + | chr7.3:54272637-54272656 | MS.gene26034:CDS | 30.0% | |
!! | CAAACTGAAATAGTATCGAT+TGG | + | chr7.3:54272704-54272723 | MS.gene26034:CDS | 30.0% |
AGTGATGTCTTTGCATGATT+TGG | - | chr7.3:54272974-54272993 | None:intergenic | 35.0% | |
CAGCATTAGTTAATTACCGT+TGG | + | chr7.3:54272143-54272162 | MS.gene26034:intron | 35.0% | |
GCTTACAATTAGAAAATCGG+CGG | + | chr7.3:54272165-54272184 | MS.gene26034:intron | 35.0% | |
GGGGTCATCTGATAATAAAA+TGG | - | chr7.3:54272803-54272822 | None:intergenic | 35.0% | |
! | ACCTCTAAAAGATGAGAAGA+AGG | + | chr7.3:54272727-54272746 | MS.gene26034:CDS | 35.0% |
! | ATGTCTTTGCATGATTTGGA+AGG | - | chr7.3:54272970-54272989 | None:intergenic | 35.0% |
! | TCCTTCTTCTCATCTTTTAG+AGG | - | chr7.3:54272731-54272750 | None:intergenic | 35.0% |
!!! | GTTTTTTGGTCATTTCCATG+TGG | + | chr7.3:54272205-54272224 | MS.gene26034:intron | 35.0% |
ACCTAGAATTGGATTCTGCT+TGG | + | chr7.3:54272941-54272960 | MS.gene26034:intron | 40.0% | |
AGTACCACTGCTATGTAATG+TGG | + | chr7.3:54272075-54272094 | MS.gene26034:intron | 40.0% | |
GGCGGTATTTAACTACCATT+AGG | + | chr7.3:54272183-54272202 | MS.gene26034:intron | 40.0% | |
TTAGCCACATTACATAGCAG+TGG | - | chr7.3:54272082-54272101 | None:intergenic | 40.0% | |
!! | CATTGATTCCTAAAGCCACA+TGG | - | chr7.3:54272223-54272242 | None:intergenic | 40.0% |
GCCAAGCAGAATCCAATTCT+AGG | - | chr7.3:54272945-54272964 | None:intergenic | 45.0% | |
GGGGGATATTGATCCAGTAA+AGG | + | chr7.3:54272655-54272674 | MS.gene26034:CDS | 45.0% | |
GGTCATTTCCATGTGGCTTT+AGG | + | chr7.3:54272212-54272231 | MS.gene26034:intron | 45.0% | |
!! | AAAAAAAAAAAACTTAAATA+AGG | + | chr7.3:54272413-54272432 | MS.gene26034:intron | 5.0% |
! | AAGACAGCATCTAGCCTTCC+AGG | + | chr7.3:54272023-54272042 | MS.gene26034:CDS | 50.0% |
AGCTTGCGCACTGCCTTTAC+TGG | - | chr7.3:54272671-54272690 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 54272020 | 54273003 | 54272020 | ID=MS.gene26034 |
chr7.3 | mRNA | 54272020 | 54273003 | 54272020 | ID=MS.gene26034.t1;Parent=MS.gene26034 |
chr7.3 | exon | 54272020 | 54272044 | 54272020 | ID=MS.gene26034.t1.exon1;Parent=MS.gene26034.t1 |
chr7.3 | CDS | 54272020 | 54272044 | 54272020 | ID=cds.MS.gene26034.t1;Parent=MS.gene26034.t1 |
chr7.3 | exon | 54272606 | 54272769 | 54272606 | ID=MS.gene26034.t1.exon2;Parent=MS.gene26034.t1 |
chr7.3 | CDS | 54272606 | 54272769 | 54272606 | ID=cds.MS.gene26034.t1;Parent=MS.gene26034.t1 |
chr7.3 | exon | 54272947 | 54273003 | 54272947 | ID=MS.gene26034.t1.exon3;Parent=MS.gene26034.t1 |
chr7.3 | CDS | 54272947 | 54273003 | 54272947 | ID=cds.MS.gene26034.t1;Parent=MS.gene26034.t1 |
Gene Sequence |
Protein sequence |