Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050251.t1 | XP_013448450.1 | 90.1 | 81 | 8 | 0 | 21 | 101 | 3 | 83 | 1.10E-30 | 142.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050251.t1 | O03982 | 50.0 | 74 | 36 | 1 | 21 | 93 | 3 | 76 | 2.0e-14 | 79.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050251.t1 | A0A072TYH4 | 90.1 | 81 | 8 | 0 | 21 | 101 | 3 | 83 | 7.7e-31 | 142.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050251 | MS.gene051719 | 0.821166 | 4.67E-53 | -1.69E-46 |
| MS.gene050251 | MS.gene051720 | 0.807157 | 5.80E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene053226 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene050251 | MS.gene054775 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene056150 | 0.826418 | 2.74E-54 | -1.69E-46 |
| MS.gene050251 | MS.gene056151 | 0.815015 | 1.15E-51 | -1.69E-46 |
| MS.gene050251 | MS.gene064944 | 0.806055 | 9.91E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene066433 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene066782 | 0.806562 | 7.74E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene066784 | 0.817863 | 2.64E-52 | -1.69E-46 |
| MS.gene050251 | MS.gene066950 | 0.806885 | 6.62E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene06940 | 0.802212 | 6.25E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene07876 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene050251 | MS.gene26034 | 0.819567 | 1.09E-52 | -1.69E-46 |
| MS.gene050251 | MS.gene26035 | 0.947961 | 2.42E-106 | -1.69E-46 |
| MS.gene050251 | MS.gene27573 | 0.805604 | 1.23E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene29022 | 0.826484 | 2.64E-54 | -1.69E-46 |
| MS.gene050251 | MS.gene30739 | 0.802349 | 5.85E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene35631 | 0.818171 | 2.25E-52 | -1.69E-46 |
| MS.gene050251 | MS.gene36284 | 0.809309 | 2.02E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene41679 | 0.806987 | 6.30E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene53321 | 0.813414 | 2.59E-51 | -1.69E-46 |
| MS.gene050251 | MS.gene53586 | 0.821327 | 4.28E-53 | -1.69E-46 |
| MS.gene050251 | MS.gene54967 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene050251 | MS.gene55406 | 0.825484 | 4.57E-54 | -1.69E-46 |
| MS.gene050251 | MS.gene62214 | 0.801694 | 7.98E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene64249 | 0.820559 | 6.44E-53 | -1.69E-46 |
| MS.gene050251 | MS.gene67746 | 0.801284 | 9.68E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene72268 | 0.817073 | 3.98E-52 | -1.69E-46 |
| MS.gene050251 | MS.gene72400 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene73327 | 0.807355 | 5.26E-50 | -1.69E-46 |
| MS.gene050251 | MS.gene74370 | 0.801353 | 9.37E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene74373 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene76158 | 0.800202 | 1.61E-48 | -1.69E-46 |
| MS.gene050251 | MS.gene84426 | 0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene84454 | 0.800046 | 1.73E-48 | -1.69E-46 |
| MS.gene050251 | MS.gene89099 | 0.817909 | 2.58E-52 | -1.69E-46 |
| MS.gene050251 | MS.gene90605 | 0.816025 | 6.84E-52 | -1.69E-46 |
| MS.gene050251 | MS.gene99766 | 0.806334 | 8.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050251.t1 | MTR_7g451210 | 90.123 | 81 | 8 | 0 | 21 | 101 | 3 | 83 | 1.03e-48 | 150 |
| MS.gene050251.t1 | MTR_7g451200 | 85.185 | 81 | 12 | 0 | 21 | 101 | 3 | 83 | 9.28e-47 | 145 |
| MS.gene050251.t1 | MTR_1173s0010 | 85.185 | 81 | 12 | 0 | 21 | 101 | 3 | 83 | 1.50e-46 | 145 |
| MS.gene050251.t1 | MTR_3g434960 | 82.716 | 81 | 14 | 0 | 21 | 101 | 3 | 83 | 3.17e-45 | 142 |
| MS.gene050251.t1 | MTR_3g434890 | 82.716 | 81 | 14 | 0 | 21 | 101 | 3 | 83 | 4.91e-45 | 141 |
| MS.gene050251.t1 | MTR_3g435000 | 82.759 | 87 | 12 | 1 | 18 | 101 | 1 | 87 | 1.31e-44 | 140 |
| MS.gene050251.t1 | MTR_6g049260 | 81.013 | 79 | 15 | 0 | 21 | 99 | 3 | 81 | 2.53e-40 | 129 |
| MS.gene050251.t1 | MTR_6g051680 | 63.235 | 68 | 25 | 0 | 20 | 87 | 2 | 69 | 1.14e-28 | 100 |
| MS.gene050251.t1 | MTR_6g049320 | 65.672 | 67 | 23 | 0 | 21 | 87 | 3 | 69 | 9.10e-28 | 98.2 |
| MS.gene050251.t1 | MTR_3g434920 | 78.571 | 56 | 12 | 0 | 46 | 101 | 2 | 57 | 1.02e-27 | 96.7 |
| MS.gene050251.t1 | MTR_6g051690 | 63.235 | 68 | 25 | 0 | 20 | 87 | 2 | 69 | 1.31e-27 | 97.8 |
| MS.gene050251.t1 | MTR_6g049320 | 64.286 | 70 | 25 | 0 | 18 | 87 | 30 | 99 | 1.44e-27 | 98.6 |
| MS.gene050251.t1 | MTR_6g049280 | 62.687 | 67 | 25 | 0 | 21 | 87 | 3 | 69 | 1.08e-26 | 95.5 |
| MS.gene050251.t1 | MTR_6g049280 | 61.429 | 70 | 27 | 0 | 18 | 87 | 30 | 99 | 2.42e-26 | 95.5 |
| MS.gene050251.t1 | MTR_1g099800 | 64.179 | 67 | 24 | 0 | 21 | 87 | 3 | 69 | 6.46e-26 | 94.0 |
| MS.gene050251.t1 | MTR_1g099810 | 62.687 | 67 | 25 | 0 | 21 | 87 | 3 | 69 | 1.69e-25 | 92.8 |
| MS.gene050251.t1 | MTR_8g098915 | 55.714 | 70 | 31 | 0 | 21 | 90 | 3 | 72 | 4.43e-25 | 91.7 |
| MS.gene050251.t1 | MTR_1g099640 | 52.239 | 67 | 32 | 0 | 20 | 86 | 2 | 68 | 2.80e-21 | 82.0 |
| MS.gene050251.t1 | MTR_1g099815 | 56.522 | 69 | 29 | 1 | 21 | 89 | 3 | 70 | 5.77e-21 | 81.3 |
| MS.gene050251.t1 | MTR_1g102240 | 56.522 | 69 | 29 | 1 | 21 | 89 | 3 | 70 | 1.53e-20 | 80.1 |
| MS.gene050251.t1 | MTR_0795s0020 | 53.623 | 69 | 26 | 1 | 20 | 88 | 2 | 64 | 2.35e-19 | 77.0 |
| MS.gene050251.t1 | MTR_7g079110 | 48.485 | 66 | 34 | 0 | 21 | 86 | 3 | 68 | 4.86e-19 | 77.4 |
| MS.gene050251.t1 | MTR_1g099810 | 62.000 | 50 | 19 | 0 | 38 | 87 | 1 | 50 | 1.13e-18 | 75.1 |
| MS.gene050251.t1 | MTR_8g098915 | 58.491 | 53 | 22 | 0 | 38 | 90 | 1 | 53 | 4.31e-18 | 73.2 |
| MS.gene050251.t1 | MTR_8g028615 | 51.064 | 47 | 23 | 0 | 40 | 86 | 22 | 68 | 3.67e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050251.t1 | AT1G01490 | 50.000 | 68 | 33 | 1 | 21 | 87 | 3 | 70 | 4.92e-19 | 77.4 |
| MS.gene050251.t1 | AT1G01490 | 50.000 | 68 | 33 | 1 | 21 | 87 | 3 | 70 | 4.92e-19 | 77.4 |
| MS.gene050251.t1 | AT1G01490 | 50.000 | 68 | 33 | 1 | 21 | 87 | 30 | 97 | 6.25e-19 | 77.8 |
| MS.gene050251.t1 | AT5G52740 | 46.269 | 67 | 34 | 1 | 22 | 88 | 4 | 68 | 1.23e-13 | 62.0 |
Find 14 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGCATACTGCCTTTAT+TGG | 0.181377 | 7.1:+52817725 | None:intergenic |
| AAGACAGCATCCAGCCTTTC+AGG | 0.250035 | 7.1:-52818309 | MS.gene050251:intron |
| GAGAAGAGATTAACATTATC+GGG | 0.360117 | 7.1:-52817758 | MS.gene050251:CDS |
| TTCACAATGTTCCTTCTCTA+TGG | 0.371780 | 7.1:+52819094 | None:intergenic |
| AGAGAAGAGATTAACATTAT+CGG | 0.398276 | 7.1:-52817759 | MS.gene050251:CDS |
| TCAATATGTACCTGAAAGGC+TGG | 0.458728 | 7.1:+52818299 | None:intergenic |
| ACAGAAAGTGGTGTTGAAAG+TGG | 0.486257 | 7.1:-52818367 | MS.gene050251:intron |
| CAAACTGAAGTAGTTACGAT+TGG | 0.578605 | 7.1:-52817689 | MS.gene050251:CDS |
| TACGATTGGACCTCTAAAAG+AGG | 0.583295 | 7.1:-52817675 | MS.gene050251:CDS |
| AAATTCAATATGTACCTGAA+AGG | 0.592630 | 7.1:+52818295 | None:intergenic |
| TTATTGAGTTTAAGTGTGAG+TGG | 0.614038 | 7.1:+52819071 | None:intergenic |
| GCAAGAACAGACCATAGAGA+AGG | 0.620993 | 7.1:-52819105 | MS.gene050251:CDS |
| AGAAGAGATTAACATTATCG+GGG | 0.638995 | 7.1:-52817757 | MS.gene050251:CDS |
| GAAGAGATTAACATTATCGG+GGG | 0.676086 | 7.1:-52817756 | MS.gene050251:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATTTTTATTTTGC+AGG | - | chr7.1:52818242-52818261 | MS.gene050251:intron | 10.0% |
| !!! | TAACTTAAATTAATTTGATA+AGG | - | chr7.1:52818060-52818079 | MS.gene050251:intron | 10.0% |
| !!! | TTTTTTATTTTTATTTTGCA+GGG | - | chr7.1:52818243-52818262 | MS.gene050251:intron | 10.0% |
| !! | AAAAGCAAATATAAAATTCA+AGG | + | chr7.1:52818835-52818854 | None:intergenic | 15.0% |
| !! | AAAATTAAAATCAATCACAA+TGG | + | chr7.1:52818021-52818040 | None:intergenic | 15.0% |
| !! | ATAGTATGTAAAGTTTATTT+CGG | + | chr7.1:52817869-52817888 | None:intergenic | 15.0% |
| !! | ATATTACAGCAAAAAAAAAA+AGG | + | chr7.1:52818761-52818780 | None:intergenic | 15.0% |
| !! | TTCCATTCTTAAATATTAAA+GGG | + | chr7.1:52817621-52817640 | None:intergenic | 15.0% |
| !!! | AATTGGTAACTATTTATATA+AGG | + | chr7.1:52817392-52817411 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTATTTTGCAG+GGG | - | chr7.1:52818244-52818263 | MS.gene050251:intron | 15.0% |
| !! | AATGAATCTTTCATGTTATA+TGG | + | chr7.1:52818225-52818244 | None:intergenic | 20.0% |
| !! | AATGGTAAAATACAGTTAAT+TGG | + | chr7.1:52817109-52817128 | None:intergenic | 20.0% |
| !! | ACTATTTATATAAGGTAGAT+AGG | + | chr7.1:52817384-52817403 | None:intergenic | 20.0% |
| !! | ATTTATTGTATTCAAGAGTT+TGG | - | chr7.1:52817887-52817906 | MS.gene050251:intron | 20.0% |
| !! | CTTCCATTCTTAAATATTAA+AGG | + | chr7.1:52817622-52817641 | None:intergenic | 20.0% |
| !! | TAAAATACAGTTAATTGGTT+AGG | + | chr7.1:52817104-52817123 | None:intergenic | 20.0% |
| !! | TAGTAATCACAAAAATATTG+TGG | + | chr7.1:52818485-52818504 | None:intergenic | 20.0% |
| !! | TAGTATGTAAAGTTTATTTC+GGG | + | chr7.1:52817868-52817887 | None:intergenic | 20.0% |
| ! | AAATTCAATATGTACCTGAA+AGG | + | chr7.1:52817759-52817778 | None:intergenic | 25.0% |
| ! | AATCACAAAAATATTGTGGT+GGG | + | chr7.1:52818481-52818500 | None:intergenic | 25.0% |
| ! | AATGGAAGTAATTAATTGCT+GGG | - | chr7.1:52817634-52817653 | MS.gene050251:intron | 25.0% |
| ! | ACGGTTATTAAAATGATGAT+AGG | - | chr7.1:52817295-52817314 | MS.gene050251:intron | 25.0% |
| ! | AGAGAAGAGATTAACATTAT+CGG | - | chr7.1:52818292-52818311 | MS.gene050251:intron | 25.0% |
| ! | ATTACTACTATGTTTGATGT+GGG | - | chr7.1:52818498-52818517 | MS.gene050251:intron | 25.0% |
| ! | CATCTGATAATAAAATGGAT+AGG | + | chr7.1:52818456-52818475 | None:intergenic | 25.0% |
| ! | GTCCCTTTAATATTTAAGAA+TGG | - | chr7.1:52817616-52817635 | MS.gene050251:intron | 25.0% |
| ! | TAATCACAAAAATATTGTGG+TGG | + | chr7.1:52818482-52818501 | None:intergenic | 25.0% |
| !! | TAGATTTTATTCTCAAACGA+CGG | + | chr7.1:52818167-52818186 | None:intergenic | 25.0% |
| !!! | TAGGTTTCAAAGTATTGAAA+TGG | + | chr7.1:52818437-52818456 | None:intergenic | 25.0% |
| !!! | TTACACTTTTTAACAGAAAG+TGG | - | chr7.1:52817672-52817691 | MS.gene050251:CDS | 25.0% |
| AAGTTCCTTTACAACAAAAG+AGG | + | chr7.1:52817249-52817268 | None:intergenic | 30.0% | |
| ACAAACTTCAACAACAATGA+AGG | - | chr7.1:52817506-52817525 | MS.gene050251:intron | 30.0% | |
| AGAAGAGATTAACATTATCG+GGG | - | chr7.1:52818294-52818313 | MS.gene050251:intron | 30.0% | |
| AGTACTACTACTATGTAATG+TGG | - | chr7.1:52817788-52817807 | MS.gene050251:CDS | 30.0% | |
| ATCACAAAAATATTGTGGTG+GGG | + | chr7.1:52818480-52818499 | None:intergenic | 30.0% | |
| CACTTAAACTCAATAACGTA+TGG | - | chr7.1:52816987-52817006 | MS.gene050251:intron | 30.0% | |
| CTACTTACTAATGACTAACT+TGG | - | chr7.1:52819043-52819062 | MS.gene050251:intron | 30.0% | |
| GAAAATGTGCAATAACAGAT+GGG | - | chr7.1:52818679-52818698 | MS.gene050251:intron | 30.0% | |
| GAATGGAAGTAATTAATTGC+TGG | - | chr7.1:52817633-52817652 | MS.gene050251:intron | 30.0% | |
| GAGAAGAGATTAACATTATC+GGG | - | chr7.1:52818293-52818312 | MS.gene050251:intron | 30.0% | |
| GATGAAGTAAGGATGATAAT+TGG | + | chr7.1:52817409-52817428 | None:intergenic | 30.0% | |
| GATTACTACTATGTTTGATG+TGG | - | chr7.1:52818497-52818516 | MS.gene050251:intron | 30.0% | |
| GATTCAAACTAACATTCACA+CGG | - | chr7.1:52817276-52817295 | MS.gene050251:intron | 30.0% | |
| TAGCTGATTAAGAATTGGTA+AGG | + | chr7.1:52817484-52817503 | None:intergenic | 30.0% | |
| TGAAAATGTGCAATAACAGA+TGG | - | chr7.1:52818678-52818697 | MS.gene050251:intron | 30.0% | |
| TTATTGAGTTTAAGTGTGAG+TGG | + | chr7.1:52816983-52817002 | None:intergenic | 30.0% | |
| ! | CAATTGACTAGTTGACTTTA+CGG | - | chr7.1:52817345-52817364 | MS.gene050251:intron | 30.0% |
| !! | GATTTCCTCTTTTGTTGTAA+AGG | - | chr7.1:52817241-52817260 | MS.gene050251:intron | 30.0% |
| !! | GTTTTGCTTTTGAGAAGAAA+TGG | + | chr7.1:52818954-52818973 | None:intergenic | 30.0% |
| !!! | ATTGTTTACTTTTTGCTTCG+TGG | + | chr7.1:52817203-52817222 | None:intergenic | 30.0% |
| !!! | GTTAGAGCTTGTACTTTTTT+AGG | + | chr7.1:52817137-52817156 | None:intergenic | 30.0% |
| AATGGTATCGTAAGAGCAAA+TGG | + | chr7.1:52818003-52818022 | None:intergenic | 35.0% | |
| AGAAACGAGCAAAAACAGAT+GGG | + | chr7.1:52818559-52818578 | None:intergenic | 35.0% | |
| AGAAATTCACACATTAAGCG+AGG | - | chr7.1:52817913-52817932 | MS.gene050251:intron | 35.0% | |
| CAAACTGAAGTAGTTACGAT+TGG | - | chr7.1:52818362-52818381 | MS.gene050251:CDS | 35.0% | |
| GAAGAGATTAACATTATCGG+GGG | - | chr7.1:52818295-52818314 | MS.gene050251:intron | 35.0% | |
| GAATAGTTCTCACTAAACTC+TGG | - | chr7.1:52817009-52817028 | MS.gene050251:intron | 35.0% | |
| GGGGTCATCTGATAATAAAA+TGG | + | chr7.1:52818461-52818480 | None:intergenic | 35.0% | |
| TGTGCTAGCTGATTAAGAAT+TGG | + | chr7.1:52817489-52817508 | None:intergenic | 35.0% | |
| TTCACAATGTTCCTTCTCTA+TGG | + | chr7.1:52816960-52816979 | None:intergenic | 35.0% | |
| ! | AATGAAGTGGTGATGAAGTA+AGG | + | chr7.1:52817420-52817439 | None:intergenic | 35.0% |
| ! | CTTTGAGAATTGTTCTTCTC+CGG | + | chr7.1:52818705-52818724 | None:intergenic | 35.0% |
| ! | TAACTTATGCTCGGCTATTT+TGG | + | chr7.1:52818583-52818602 | None:intergenic | 35.0% |
| ! | TCTTTCTTCTCCTCTTTTAG+AGG | + | chr7.1:52818389-52818408 | None:intergenic | 35.0% |
| !! | GTGCATAATAAGAAAGCATC+CGG | - | chr7.1:52818520-52818539 | MS.gene050251:intron | 35.0% |
| !! | TGCTTTTGAGAAGAAATGGT+TGG | + | chr7.1:52818950-52818969 | None:intergenic | 35.0% |
| !! | TTTTGAGAAGAAATGGTTGG+TGG | + | chr7.1:52818947-52818966 | None:intergenic | 35.0% |
| !!! | AGAGCTTGTACTTTTTTAGG+TGG | + | chr7.1:52817134-52817153 | None:intergenic | 35.0% |
| !!! | AGTGTGTTTTAGCAATGAAG+TGG | + | chr7.1:52817433-52817452 | None:intergenic | 35.0% |
| !!! | GAGCTTGTACTTTTTTAGGT+GGG | + | chr7.1:52817133-52817152 | None:intergenic | 35.0% |
| !!! | GTACTTTTTTAGGTGGGAAA+TGG | + | chr7.1:52817127-52817146 | None:intergenic | 35.0% |
| AAACATACTTGCCTAGCCAT+CGG | + | chr7.1:52818732-52818751 | None:intergenic | 40.0% | |
| AGCTTGCATACTGCCTTTAT+TGG | + | chr7.1:52818329-52818348 | None:intergenic | 40.0% | |
| AGCTTTCAGGCAAGAGTTTA+GGG | + | chr7.1:52817036-52817055 | None:intergenic | 40.0% | |
| CAGAAACGAGCAAAAACAGA+TGG | + | chr7.1:52818560-52818579 | None:intergenic | 40.0% | |
| GATGGGAAAAGAGCAATAAC+CGG | + | chr7.1:52818542-52818561 | None:intergenic | 40.0% | |
| TCAATATGTACCTGAAAGGC+TGG | + | chr7.1:52817755-52817774 | None:intergenic | 40.0% | |
| TGCGTGAGTTAACTTATGCT+CGG | + | chr7.1:52818592-52818611 | None:intergenic | 40.0% | |
| TGTGATGTCTTTGCATGCTT+TGG | + | chr7.1:52818895-52818914 | None:intergenic | 40.0% | |
| ! | AAGACTAGTTGAGAGCTTTC+AGG | + | chr7.1:52817049-52817068 | None:intergenic | 40.0% |
| ! | ACAGAAAGTGGTGTTGAAAG+TGG | - | chr7.1:52817684-52817703 | MS.gene050251:CDS | 40.0% |
| ! | TACGATTGGACCTCTAAAAG+AGG | - | chr7.1:52818376-52818395 | MS.gene050251:intron | 40.0% |
| AACATACTTGCCTAGCCATC+GGG | + | chr7.1:52818731-52818750 | None:intergenic | 45.0% | |
| ATGTGCAATAACAGATGGGC+CGG | - | chr7.1:52818683-52818702 | MS.gene050251:intron | 45.0% | |
| CGAGGACAAGAGAGATATAG+CGG | - | chr7.1:52817931-52817950 | MS.gene050251:intron | 45.0% | |
| GAGCTTTCAGGCAAGAGTTT+AGG | + | chr7.1:52817037-52817056 | None:intergenic | 45.0% | |
| GAGGACAAGAGAGATATAGC+GGG | - | chr7.1:52817932-52817951 | MS.gene050251:intron | 45.0% | |
| GCAAGAACAGACCATAGAGA+AGG | - | chr7.1:52816946-52816965 | MS.gene050251:intron | 45.0% | |
| GGGGGATATCGATCCAATAA+AGG | - | chr7.1:52818313-52818332 | MS.gene050251:CDS | 45.0% | |
| ! | CAATTCTCAAAGCATCCCGA+TGG | - | chr7.1:52818713-52818732 | MS.gene050251:intron | 45.0% |
| AAGACAGCATCCAGCCTTTC+AGG | - | chr7.1:52817742-52817761 | MS.gene050251:CDS | 50.0% | |
| CAGCGTGAGTTAACTCACGT+TGG | - | chr7.1:52818654-52818673 | MS.gene050251:intron | 50.0% | |
| TGCTTCGTGGCTGCATCTCA+TGG | + | chr7.1:52817190-52817209 | None:intergenic | 55.0% | |
| ! | CTCAAAGCATCCCGATGGCT+AGG | - | chr7.1:52818718-52818737 | MS.gene050251:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 52816944 | 52819129 | 52816944 | ID=MS.gene050251 |
| chr7.1 | mRNA | 52816944 | 52819129 | 52816944 | ID=MS.gene050251.t1;Parent=MS.gene050251 |
| chr7.1 | exon | 52819070 | 52819129 | 52819070 | ID=MS.gene050251.t1.exon1;Parent=MS.gene050251.t1 |
| chr7.1 | CDS | 52819070 | 52819129 | 52819070 | ID=cds.MS.gene050251.t1;Parent=MS.gene050251.t1 |
| chr7.1 | exon | 52818310 | 52818385 | 52818310 | ID=MS.gene050251.t1.exon2;Parent=MS.gene050251.t1 |
| chr7.1 | CDS | 52818310 | 52818385 | 52818310 | ID=cds.MS.gene050251.t1;Parent=MS.gene050251.t1 |
| chr7.1 | exon | 52817646 | 52817809 | 52817646 | ID=MS.gene050251.t1.exon3;Parent=MS.gene050251.t1 |
| chr7.1 | CDS | 52817646 | 52817809 | 52817646 | ID=cds.MS.gene050251.t1;Parent=MS.gene050251.t1 |
| chr7.1 | exon | 52816944 | 52816949 | 52816944 | ID=MS.gene050251.t1.exon4;Parent=MS.gene050251.t1 |
| chr7.1 | CDS | 52816944 | 52816949 | 52816944 | ID=cds.MS.gene050251.t1;Parent=MS.gene050251.t1 |
| Gene Sequence |
| Protein sequence |
