AlfalfaGEDB | MS.gene26155

M. sativa cultivar XinJiangDaYe / MS.gene26155

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26155.t1	XP_003616189.1	97.6	665	12	2	44	708	40	700	0.00E+00	1191.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26155.t1	Q9LFH9	72.8	679	171	6	32	698	21	697	1.3e-256	887.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26155.t1	G7KFW0	97.6	665	12	2	44	708	40	700	0.0e+00	1191.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049887	MS.gene26155	0.853477	2.33E-61	-1.69E-46
MS.gene051102	MS.gene26155	0.800228	1.59E-48	-1.69E-46
MS.gene051885	MS.gene26155	0.803876	2.83E-49	-1.69E-46
MS.gene052397	MS.gene26155	0.802457	5.56E-49	-1.69E-46
MS.gene052732	MS.gene26155	0.815521	8.86E-52	-1.69E-46
MS.gene053144	MS.gene26155	0.817595	3.04E-52	-1.69E-46
MS.gene054584	MS.gene26155	0.811165	8.02E-51	-1.69E-46
MS.gene055891	MS.gene26155	0.825807	3.83E-54	-1.69E-46
MS.gene056432	MS.gene26155	0.812192	4.80E-51	-1.69E-46
MS.gene059171	MS.gene26155	0.803278	3.76E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26155.t1	MTR_5g077100	97.258	693	15	2	16	708	12	700	0.0	1374
MS.gene26155.t1	MTR_5g095970	47.014	653	312	12	41	685	35	661	3.03e-178	525
MS.gene26155.t1	MTR_3g007870	46.861	653	300	15	41	685	35	648	8.27e-172	508
MS.gene26155.t1	MTR_3g460810	44.242	660	298	15	18	664	8	610	1.50e-170	504
MS.gene26155.t1	MTR_1g099260	41.033	658	318	15	33	664	15	628	2.78e-147	444
MS.gene26155.t1	MTR_7g063030	39.233	678	343	11	43	701	37	664	1.58e-140	427
MS.gene26155.t1	MTR_7g063030	39.398	665	335	10	55	701	44	658	2.09e-140	426
MS.gene26155.t1	MTR_7g063010	40.348	632	309	15	44	657	35	616	2.52e-133	410
MS.gene26155.t1	MTR_3g068025	39.750	639	310	11	43	657	39	626	1.43e-128	396
MS.gene26155.t1	MTR_5g035910	39.227	673	336	16	7	657	2	623	5.21e-128	395

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26155.t1	AT3G53380	71.407	668	175	7	32	686	21	685	0.0	920
MS.gene26155.t1	AT5G03140	66.420	676	210	4	32	701	34	698	0.0	871
MS.gene26155.t1	AT5G55830	51.395	681	275	15	35	693	33	679	0.0	631
MS.gene26155.t1	AT5G42120	39.046	671	349	14	29	664	13	658	1.07e-139	426
MS.gene26155.t1	AT3G55550	41.776	608	293	12	72	660	63	628	7.58e-130	400
MS.gene26155.t1	AT2G37710	39.389	655	320	18	55	687	50	649	1.17e-125	389
MS.gene26155.t1	AT5G10530	36.364	682	342	20	14	664	1	621	4.72e-122	379
MS.gene26155.t1	AT4G02420	37.480	635	333	14	43	657	38	628	5.61e-121	377
MS.gene26155.t1	AT4G02410	38.376	628	318	18	54	657	51	633	2.42e-118	370
MS.gene26155.t1	AT3G53810	38.438	640	321	18	42	657	36	626	8.11e-118	369

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Find 202 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGACGTGTTTAGTTA+TGG	0.480179	5.4:+57303433	MS.gene26155:CDS
AAAGGCAAGTCCACCGCCGA+TGG	0.560087	5.4:-57302090	None:intergenic
AACAAAATCTTTCGGCGGTG+AGG	0.568207	5.4:-57303181	None:intergenic
AACCCTTCTTCCATCGGCGG+TGG	0.426412	5.4:+57302080	MS.gene26155:CDS
AACCGCCACAAACCCATTTC+CGG	0.344987	5.4:-57302168	None:intergenic
AACTGAGCATGACAAGTCTC+CGG	0.560441	5.4:+57303339	MS.gene26155:CDS
AAGAAAGTGGTGAAACTCGC+CGG	0.520888	5.4:-57302035	None:intergenic
AAGGTAGTACAGAGATTCAT+AGG	0.512893	5.4:+57302483	MS.gene26155:CDS
AATGCGCGTTTGGGAGATTT+TGG	0.193962	5.4:+57303304	MS.gene26155:CDS
AATGCTTGGATTGAATTTGA+TGG	0.390469	5.4:+57302329	MS.gene26155:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCTTGGATTGAATTTGA+TGG	+	chr5.4:57302329-57302348	MS.gene26155:CDS	30.0%
AGTAAGAAGAGTTGTCATAA+TGG	+	chr5.4:57302674-57302693	MS.gene26155:CDS	30.0%
AGTTAGTATGATGAATACCA+CGG	+	chr5.4:57302580-57302599	MS.gene26155:CDS	30.0%
CTTAAACTCAACATCCATAA+GGG	-	chr5.4:57302204-57302223	None:intergenic	30.0%
GATATTAATGGGAATCATGT+CGG	+	chr5.4:57302224-57302243	MS.gene26155:CDS	30.0%
GTGAAAATTTCTTTCTTCAC+GGG	-	chr5.4:57301625-57301644	None:intergenic	30.0%
TAATGTTCCGAAGTCAAATT+CGG	-	chr5.4:57301868-57301887	None:intergenic	30.0%
TCCTTATAACTAAACTGCTT+AGG	-	chr5.4:57302854-57302873	None:intergenic	30.0%
TTCAATGCGAATAGGATTAT+TGG	+	chr5.4:57302896-57302915	MS.gene26155:CDS	30.0%
AAAACCGACGTGTTTAGTTA+TGG	+	chr5.4:57303433-57303452	MS.gene26155:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	57301548	57303894	57301548	ID=MS.gene26155
chr5.4	mRNA	57301548	57303894	57301548	ID=MS.gene26155.t1;Parent=MS.gene26155
chr5.4	exon	57301548	57301624	57301548	ID=MS.gene26155.t1.exon1;Parent=MS.gene26155.t1
chr5.4	CDS	57301548	57301624	57301548	ID=cds.MS.gene26155.t1;Parent=MS.gene26155.t1
chr5.4	exon	57301845	57303894	57301845	ID=MS.gene26155.t1.exon2;Parent=MS.gene26155.t1
chr5.4	CDS	57301845	57303894	57301845	ID=cds.MS.gene26155.t1;Parent=MS.gene26155.t1

Gene Sequence

>MS.gene26155

ATGTGTGTTAACCATCCACCTGTCTTTGTTCAGTTTCCCATGGGATTCTCTGTCACTCTCTCTCTCAAATCTCTCCCGTGAAGAAAGAAATTTTCACACCTCTTCTTTCATTTTCATTTTCATTTTCAATGCCTATTCTCAATTTCTCAGAAAAATACAAAAACATAAACATAAACACCAATTGAAACAACACTCTCTTCACTACTTCACTTCACTCTCTCTCTCTCTCTCTCTCTCATCAATGTCTCATCTTTCTCTCTCCTTTCTCTTCTTCTTTTTGTGCCTTAGTTTTTTCAGCTTATCAATAATCGCTTCTACCGAATTTGACTTCGGAACATTAACACTCACAAGCCTCAAACTTCTCGGCGACGCTCATCTCAACAACGGCACCGTCACACTCACACGTGACCTCACCGTTCCATTTTCCGGCGCCGGTCAAGCATTATACTCCCGTCCGATCAGATTCCGGCAACCGGGCACCACTACTCCGGCGAGTTTCACCACTTTCTTTTCTTTCTCAGTCACCAATTTGAACCCTTCTTCCATCGGCGGTGGACTTGCCTTTGTAATCTCGCCAGATGATGACTCTCTTGGTGACGCCGGTGGTTATCTTGGTCTTGCCGGAAATGGGTTTGTGGCGGTTGAATTTGATACCCTTATGGATGTTGAGTTTAAGGATATTAATGGGAATCATGTCGGTGTTGATCTTAATAGTGTTGTTTCGAGTAAAGTTGGTGACTTGGATTCAATTGGGGTTGATCTTAAAAGTGGTGATAGTGTCAATGCTTGGATTGAATTTGATGGATCTAATAATGGGTTTAATGTTTGGGTTTCTTATTCTAATTTGAAGCCTAAAGATCCAATTTTGACTATGAATCTTGATATGGGTTTGTATTTGAATGATTTTATGTATGTTGGCTTTTCTGGTTCAACTCAAGGTAGTACAGAGATTCATAGGATTGAATGGTGGAGTTTTAGCTCATCTTTTGTGACGGGTTCCGGTGGTTCTGGTAGTTTGCCGCCTCCTCCGGCAGTTAGTATGATGAATACCACGGCGAATTCAGCGAGGTCACCACCTCCTTCTATGGCTCCTACAATGAATTCTTCAAATGAGGAAAGAAAAGAGAGTAAGAAGAGTTGTCATAATGGATTGTGTAAGCAGGGTTTGGGAGCTGTTGCTGGTGTTGTTACTGCTGGTGCTTTTGTTTTAGCACTTTTTGCTGGGTCTATGATTTGGTTGTATTCGAAGAAAGTGAAGCGTGTGAGTCGATTTGATTCGCTTGGATCGGAGATAATTAAAATGCCTAAGCAGTTTAGTTATAAGGAGCTTAAATCTGCTACAAAGTGTTTCAATGCGAATAGGATTATTGGTCATGGTGCATTTGGGACTGTGTATAAGGGAATTTTGACTGAGAATGGTGACATTATTGCTGTGAAGAGATGTAGTCATAGTAGTCAAGGTAAGAATGAGTTTTTATCTGAGTTGTCTATAATTGGTAGCCTTAGACATCGGAATCTTGTTAGACTTCAAGGATGGTGTCATGAGAAAGGAGAGATTTTGTTGGTGTATGATTTGATGCCTAATGGTAGTTTGGATAAGGCTTTGTTCGAGACTAGAACGCCTCTTCCGTGGCCTCACCGCCGAAAGATTTTGTTGGGTGTGGCGTCCGCTTTGGCTTACTTGCATCAAGAGTGTGAAAATCAGGTAATTCATAGAGATATTAAGACTAGTAACATAATGTTGGACGAAGGATTCAATGCGCGTTTGGGAGATTTTGGATTAGCAAGGCAAACTGAGCATGACAAGTCTCCGGATGCCACAGTGGCTGCTGGAACAATGGGGTATCTAGCACCCGAGTATCTCCTTACAGGTAAAGCCACCGACAAAACCGACGTGTTTAGTTATGGTGCTGTGGTTCTTGAGGTGGCTAGTGGGAGGAGACCAATAGAGAAAGATGCTGCTGGTGTTGGCAAAGTTGGAGTGAGTAGCAATTTGGTGGAATGGGTTTGGAGTTTACACAGGGAAGGAAGGTTGTTAACGGCGGTTGATCCAAGGCTCGAGGGCGAGTTCGATGAAGCGGGGATGAGAAGGGTACTCTTAGTTGGATTAGCTTGCTCACACCCTGATCCTTTGGCTAGACCAACAATGAGAAGTGTGGTTCAGATGCTAGGAGGTGAAGCTGAAGTGCCAATTGTCCCGAGAACGAAGCCTTCTACGGGTCTCAGTACTTCACACTCTCACCTCTTAATGAGCTTGCAAGATAGTGTATCTGACTGCGGTGATGGTATAATCACCATCTCTACTTCCACATCAGAGAACAGCTTCAATGGTGGAGATATAGTCTGA

Protein sequence

>MS.gene26155.t1

MCVNHPPVFVQFPMGFSVTLSLKSLPLSIIASTEFDFGTLTLTSLKLLGDAHLNNGTVTLTRDLTVPFSGAGQALYSRPIRFRQPGTTTPASFTTFFSFSVTNLNPSSIGGGLAFVISPDDDSLGDAGGYLGLAGNGFVAVEFDTLMDVEFKDINGNHVGVDLNSVVSSKVGDLDSIGVDLKSGDSVNAWIEFDGSNNGFNVWVSYSNLKPKDPILTMNLDMGLYLNDFMYVGFSGSTQGSTEIHRIEWWSFSSSFVTGSGGSGSLPPPPAVSMMNTTANSARSPPPSMAPTMNSSNEERKESKKSCHNGLCKQGLGAVAGVVTAGAFVLALFAGSMIWLYSKKVKRVSRFDSLGSEIIKMPKQFSYKELKSATKCFNANRIIGHGAFGTVYKGILTENGDIIAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFETRTPLPWPHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATDKTDVFSYGAVVLEVASGRRPIEKDAAGVGKVGVSSNLVEWVWSLHREGRLLTAVDPRLEGEFDEAGMRRVLLVGLACSHPDPLARPTMRSVVQMLGGEAEVPIVPRTKPSTGLSTSHSHLLMSLQDSVSDCGDGIITISTSTSENSFNGGDIV