AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26304

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26304.t1 MTR_5g074580 91.844 282 23 0 1 282 79 360 0.0 539
MS.gene26304.t1 MTR_5g074680 81.495 281 52 0 1 281 79 359 2.23e-176 491
MS.gene26304.t1 MTR_5g074600 80.142 282 56 0 1 282 78 359 1.82e-174 486
MS.gene26304.t1 MTR_5g074540 73.404 282 57 1 1 282 78 341 1.69e-152 429
MS.gene26304.t1 MTR_5g074610 73.759 282 45 2 1 282 74 326 2.26e-152 429
MS.gene26304.t1 MTR_4g079160 63.251 283 99 3 1 282 77 355 1.80e-131 377
MS.gene26304.t1 MTR_7g014570 47.518 282 141 5 1 282 78 352 1.69e-90 273
MS.gene26304.t1 MTR_7g014510 47.018 285 143 5 1 282 78 357 2.22e-89 270
MS.gene26304.t1 MTR_1g076940 46.690 287 145 6 1 282 78 361 1.31e-88 268
MS.gene26304.t1 MTR_4g033200 50.000 288 136 5 1 282 78 363 1.60e-88 268
MS.gene26304.t1 MTR_4g033015 49.306 288 138 5 1 282 78 363 1.09e-86 263
MS.gene26304.t1 MTR_4g088200 45.804 286 149 5 1 282 78 361 4.22e-86 261
MS.gene26304.t1 MTR_4g033150 48.264 288 141 5 1 282 78 363 4.00e-84 256
MS.gene26304.t1 MTR_4g088345 45.936 283 148 4 1 282 78 356 4.46e-82 251
MS.gene26304.t1 MTR_7g024520 45.357 280 145 4 1 280 77 348 8.31e-82 250
MS.gene26304.t1 MTR_7g024500 43.214 280 151 4 1 280 77 348 3.40e-81 249
MS.gene26304.t1 MTR_4g088190 46.713 289 145 5 1 282 78 364 1.72e-80 247
MS.gene26304.t1 MTR_4g088340 44.170 283 153 4 1 282 55 333 1.24e-78 241
MS.gene26304.t1 MTR_4g033170 46.667 285 144 5 1 282 78 357 1.02e-72 227
MS.gene26304.t1 MTR_4g033085 44.912 285 149 5 1 282 78 357 1.43e-68 216
MS.gene26304.t1 MTR_3g083620 37.276 279 171 3 1 278 82 357 8.01e-63 202
MS.gene26304.t1 MTR_0079s0070 41.045 268 151 5 18 282 71 334 7.95e-62 199
MS.gene26304.t1 MTR_4g038440 41.045 268 151 5 18 282 105 368 2.01e-61 198
MS.gene26304.t1 MTR_0017s0100 41.045 268 151 4 18 282 105 368 5.74e-59 192
MS.gene26304.t1 MTR_0591s0010 36.404 228 140 3 36 263 136 358 2.71e-46 159
MS.gene26304.t1 MTR_8g068870 35.193 233 144 5 36 267 122 348 8.02e-45 155
MS.gene26304.t1 MTR_8g068750 34.914 232 146 3 36 267 136 362 1.58e-44 155
MS.gene26304.t1 MTR_8g024160 35.338 266 158 7 21 281 71 327 3.82e-44 152
MS.gene26304.t1 MTR_7g118320 34.483 261 161 7 9 267 95 347 1.72e-43 152
MS.gene26304.t1 MTR_1g076930 41.848 184 103 3 1 181 55 237 2.87e-43 148
MS.gene26304.t1 MTR_8g068690 35.965 228 141 3 36 263 135 357 3.23e-43 151
MS.gene26304.t1 MTR_7g118300 33.942 274 168 8 6 277 106 368 6.14e-43 150
MS.gene26304.t1 MTR_5g098170 33.921 227 137 6 47 269 133 350 1.01e-41 147
MS.gene26304.t1 MTR_1g036490 36.279 215 130 4 69 281 160 369 2.67e-41 146
MS.gene26304.t1 MTR_1g036460 35.874 223 136 4 61 281 152 369 1.45e-40 144
MS.gene26304.t1 MTR_3g092900 32.800 250 157 6 22 268 108 349 2.17e-40 144
MS.gene26304.t1 MTR_7g012090 32.661 248 150 5 38 277 135 373 5.84e-40 143
MS.gene26304.t1 MTR_7g012070 31.452 248 153 5 38 277 135 373 1.72e-39 141
MS.gene26304.t1 MTR_1g096310 32.051 234 150 4 38 269 132 358 1.84e-39 141
MS.gene26304.t1 MTR_6g078850 33.333 234 147 6 36 267 142 368 9.71e-39 142
MS.gene26304.t1 MTR_1g036510 37.313 201 121 3 69 269 174 369 3.11e-38 138
MS.gene26304.t1 MTR_2g055940 30.120 249 159 6 37 281 125 362 5.11e-38 137
MS.gene26304.t1 MTR_3g021440 35.000 220 137 4 50 269 143 356 5.50e-38 137
MS.gene26304.t1 MTR_7g012040 31.984 247 152 6 37 277 130 366 1.01e-37 137
MS.gene26304.t1 MTR_0794s0020 39.306 173 98 4 1 167 78 249 2.02e-36 130
MS.gene26304.t1 MTR_7g011990 29.752 242 164 4 41 281 130 366 4.36e-36 132
MS.gene26304.t1 MTR_7g011900 31.441 229 152 3 41 269 133 356 1.38e-35 131
MS.gene26304.t1 MTR_3g021430 31.884 276 170 8 8 277 87 350 1.69e-35 130
MS.gene26304.t1 MTR_7g012020 29.098 244 163 5 41 281 132 368 3.36e-34 127
MS.gene26304.t1 MTR_8g068570 39.053 169 93 5 84 249 156 317 5.19e-34 126
MS.gene26304.t1 MTR_8g068730 30.603 232 124 3 36 267 136 330 1.21e-30 117
MS.gene26304.t1 MTR_4g038440 37.952 166 101 1 18 181 105 270 1.80e-30 115
MS.gene26304.t1 MTR_2g072790 30.712 267 173 7 5 267 81 339 3.18e-28 111
MS.gene26304.t1 MTR_3g096070 32.857 210 129 6 64 267 117 320 4.41e-26 105
MS.gene26304.t1 MTR_3g096050 29.020 255 170 7 18 267 95 343 9.86e-25 102
MS.gene26304.t1 MTR_8g068600 31.973 147 98 2 36 182 110 254 1.12e-23 97.8
MS.gene26304.t1 MTR_1g050220 33.758 157 90 3 116 272 151 293 1.24e-22 95.1
MS.gene26304.t1 MTR_8g068620 38.053 113 69 1 72 184 2 113 2.23e-22 89.7
MS.gene26304.t1 MTR_8g068690 32.215 149 99 2 36 184 135 281 4.56e-22 93.6
MS.gene26304.t1 MTR_7g012020 29.655 145 101 1 41 185 132 275 7.00e-20 87.8
MS.gene26304.t1 MTR_8g068740 28.409 176 92 2 36 211 136 277 3.49e-18 82.4
MS.gene26304.t1 MTR_1g036510 34.513 113 73 1 69 181 174 285 3.07e-16 77.4
MS.gene26304.t1 MTR_4g025570 42.268 97 51 4 183 278 122 214 6.01e-14 69.7
MS.gene26304.t1 MTR_8g068760 40.230 87 49 1 181 267 135 218 4.08e-13 67.8
MS.gene26304.t1 MTR_3g096050 28.743 167 114 4 18 181 95 259 1.84e-12 66.2
MS.gene26304.t1 MTR_7g012020 29.204 113 79 1 41 153 132 243 2.19e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26304.t1 AT4G35160 35.374 294 174 7 1 281 90 380 4.31e-51 172
MS.gene26304.t1 AT4G35150 40.367 218 117 4 73 281 110 323 1.53e-48 164
MS.gene26304.t1 AT1G51990 35.338 266 162 6 21 282 103 362 9.06e-48 163
MS.gene26304.t1 AT1G51990 35.338 266 162 6 21 282 103 362 1.56e-47 162
MS.gene26304.t1 AT5G54160 35.426 223 137 5 47 268 131 347 5.58e-42 148
MS.gene26304.t1 AT1G77520 33.766 231 143 4 57 281 154 380 2.80e-38 139
MS.gene26304.t1 AT1G33030 36.017 236 139 8 37 268 109 336 3.90e-38 137
MS.gene26304.t1 AT5G53810 35.945 217 130 5 68 281 167 377 3.05e-34 128
MS.gene26304.t1 AT1G77530 35.814 215 133 3 68 281 170 380 4.17e-33 125
MS.gene26304.t1 AT5G37170 33.803 213 129 7 73 281 29 233 2.26e-31 117
MS.gene26304.t1 AT1G63140 35.319 235 144 5 49 281 152 380 3.39e-31 119
MS.gene26304.t1 AT1G63140 35.319 235 144 5 49 281 172 400 3.46e-31 120
MS.gene26304.t1 AT5G37170 33.803 213 129 7 73 281 129 333 4.32e-31 118
MS.gene26304.t1 AT3G53140 29.670 273 177 8 1 267 81 344 4.51e-31 119
MS.gene26304.t1 AT1G62900 36.058 208 128 3 75 281 1 204 2.28e-29 110
MS.gene26304.t1 AT5G37170 34.946 186 109 6 103 281 5 185 1.15e-27 105
MS.gene26304.t1 AT1G21130 31.227 269 161 10 12 269 105 360 1.79e-27 109
MS.gene26304.t1 AT1G21100 31.349 252 149 10 29 269 122 360 5.25e-26 105
MS.gene26304.t1 AT1G76790 31.250 224 137 6 46 263 134 346 1.63e-25 104
MS.gene26304.t1 AT1G21110 31.356 236 141 9 37 264 133 355 6.09e-25 102
MS.gene26304.t1 AT1G21120 30.833 240 145 9 37 268 133 359 2.51e-24 101
MS.gene26304.t1 AT1G21120 30.833 240 145 9 37 268 181 407 4.33e-24 100
MS.gene26304.t1 AT1G33030 31.973 147 95 4 37 181 109 252 1.15e-15 75.5
MS.gene26304.t1 AT1G33030 31.973 147 95 4 37 181 109 252 1.41e-15 75.5
MS.gene26304.t1 AT1G63140 33.582 134 85 3 49 181 172 302 5.73e-12 65.5

Find 58 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCACGGATTTGTCAAAAT+TGG 0.222639 5.4:+59701909 None:intergenic
CGACACACGGGATGTTGATA+TGG 0.233179 5.4:-59701839 MS.gene26304:CDS
AGAGACCTTAAACCTAAAAT+TGG 0.251156 5.4:+59701137 None:intergenic
ATGCGAATAATGACTCATTC+TGG 0.312409 5.4:-59702059 None:intergenic
CGTGGCATCAATTCTCTACT+TGG 0.332951 5.4:-59701893 MS.gene26304:CDS
ATTGTCCTTAAGTAGTAATA+TGG 0.361085 5.4:+59701971 None:intergenic
TGCAGTGGATATTGCATGAT+TGG 0.384572 5.4:-59701406 MS.gene26304:intron
TGCTAAATCATTCCCACAAA+TGG 0.411413 5.4:-59701649 MS.gene26304:CDS
ATTCAATGGATTGGAGTCAT+TGG 0.421743 5.4:-59701712 MS.gene26304:CDS
AAGAGAGAAACGAGAAAGAA+TGG 0.424421 5.4:-59701205 MS.gene26304:CDS
TTGGAGTCATTGGTTGATGT+TGG 0.427653 5.4:-59701702 MS.gene26304:CDS
AACAAAATGGCGTCTGTTGG+AGG 0.433773 5.4:+59701534 None:intergenic
TGCATCCATATTACTACTTA+AGG 0.438484 5.4:-59701976 MS.gene26304:CDS
TTTGTTGATTGAAAAGTGTA+GGG 0.454603 5.4:-59701739 MS.gene26304:CDS
AATACACTGCACTCCATTTG+TGG 0.458167 5.4:+59701636 None:intergenic
AGTGATAATTTAAACTATGT+TGG 0.463618 5.4:-59701579 MS.gene26304:CDS
CTTCTTTGATATGTTGATGA+TGG 0.474685 5.4:-59701243 MS.gene26304:CDS
GTTGATGTTGGAGGAGGCAT+AGG 0.474973 5.4:-59701690 MS.gene26304:CDS
ATTAAGTTGATTTCTTCAGC+TGG 0.488945 5.4:-59701182 MS.gene26304:CDS
TAGGGGAGTATTCAATGGAT+TGG 0.495288 5.4:-59701721 MS.gene26304:CDS
ACGAAAGGTGTCATACTCAT+TGG 0.503291 5.4:+59701948 None:intergenic
GACACACGGGATGTTGATAT+GGG 0.503724 5.4:-59701838 MS.gene26304:CDS
AAGTGTAGGGGAGTATTCAA+TGG 0.504991 5.4:-59701726 MS.gene26304:CDS
ATACACTGCACTCCATTTGT+GGG 0.505627 5.4:+59701637 None:intergenic
CATGTTGTCGATGGCTTGCA+AGG 0.506491 5.4:-59701603 MS.gene26304:CDS
ATAGCAAAGAAAGGTAAAGA+AGG 0.509576 5.4:-59701338 MS.gene26304:CDS
AAACTTATTCAATGAGTCCA+TGG 0.519692 5.4:-59701787 MS.gene26304:CDS
TTCAACAAAATGGCGTCTGT+TGG 0.520911 5.4:+59701531 None:intergenic
GATAATTTAAACTATGTTGG+TGG 0.523626 5.4:-59701576 MS.gene26304:CDS
GATCTCCCACATGTTGTCGA+TGG 0.533663 5.4:-59701612 MS.gene26304:CDS
AAAGAAAGGTAAAGAAGGGA+AGG 0.534278 5.4:-59701333 MS.gene26304:CDS
ATTTGTTGATTGAAAAGTGT+AGG 0.534400 5.4:-59701740 MS.gene26304:CDS
AGGCATAGGGACCATGGCAA+AGG 0.553909 5.4:-59701676 MS.gene26304:CDS
GAGTCATTGGTTGATGTTGG+AGG 0.554899 5.4:-59701699 MS.gene26304:CDS
ATGGTGTTGGAAAGTGAGAA+GGG 0.555376 5.4:-59701296 MS.gene26304:CDS
TCGAGCATCGCATGCACGAA+AGG 0.555411 5.4:+59701933 None:intergenic
TGCAAGCCATCGACAACATG+TGG 0.556174 5.4:+59701606 None:intergenic
TCATTGGTTGATGTTGGAGG+AGG 0.559528 5.4:-59701696 MS.gene26304:CDS
CATGGTGTTGGAAAGTGAGA+AGG 0.565194 5.4:-59701297 MS.gene26304:CDS
TTGATGATGGTAGTACTCAC+AGG 0.567324 5.4:-59701230 MS.gene26304:CDS
TTTAGCAAGGGCCTTTGCCA+TGG 0.572788 5.4:+59701665 None:intergenic
AAGGATGCAATAGCAAAGAA+AGG 0.578531 5.4:-59701347 MS.gene26304:CDS
TAGCAAAGAAAGGTAAAGAA+GGG 0.583690 5.4:-59701337 MS.gene26304:CDS
CTTCTCTCAACATAATGTCA+CGG 0.583728 5.4:-59702033 MS.gene26304:CDS
TTTGTGGGAATGATTTAGCA+AGG 0.587728 5.4:+59701652 None:intergenic
TTGTGGGAATGATTTAGCAA+GGG 0.591958 5.4:+59701653 None:intergenic
CCCGTGTGTCGTTTCAAATG+TGG 0.591960 5.4:+59701851 None:intergenic
TTGATGTTGGAGGAGGCATA+GGG 0.593339 5.4:-59701689 MS.gene26304:CDS
GATTGTGATAGACATGGTGT+TGG 0.599108 5.4:-59701309 MS.gene26304:CDS
ACCACATTTGAAACGACACA+CGG 0.601442 5.4:-59701852 MS.gene26304:CDS
TAATCGAGTATCACTTGCCA+TGG 0.612877 5.4:+59701770 None:intergenic
CAAGTAGAGAATTGATGCCA+CGG 0.622392 5.4:+59701894 None:intergenic
TGGAGGAGGCATAGGGACCA+TGG 0.626226 5.4:-59701682 MS.gene26304:CDS
TTGTTGATTGAAAAGTGTAG+GGG 0.631295 5.4:-59701738 MS.gene26304:CDS
TGTGTCGTTTCAAATGTGGT+AGG 0.634035 5.4:+59701855 None:intergenic
CCACATTTGAAACGACACAC+GGG 0.673702 5.4:-59701851 MS.gene26304:CDS
GCAAGCCATCGACAACATGT+GGG 0.678688 5.4:+59701607 None:intergenic
GAAGGTGATTGTGATAGACA+TGG 0.741542 5.4:-59701315 MS.gene26304:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTAAGGAATTGTA+AGG - chr5.4:59701802-59701821 MS.gene26304:CDS 15.0%
!! ATGAATGTGTAAAAATATTA+AGG - chr5.4:59701792-59701811 MS.gene26304:CDS 15.0%
!! AGTGATAATTTAAACTATGT+TGG - chr5.4:59701589-59701608 MS.gene26304:CDS 20.0%
! ATTGTCCTTAAGTAGTAATA+TGG + chr5.4:59701200-59701219 None:intergenic 25.0%
! GATAATTTAAACTATGTTGG+TGG - chr5.4:59701592-59701611 MS.gene26304:CDS 25.0%
!! ACACTTTTCAATCAACAAAT+TGG + chr5.4:59701428-59701447 None:intergenic 25.0%
!! ACATTTTACCTTCAACAAAA+TGG + chr5.4:59701650-59701669 None:intergenic 25.0%
!! ATTTGTTGATTGAAAAGTGT+AGG - chr5.4:59701428-59701447 MS.gene26304:intron 25.0%
!! TACAAGATTACTCCAATTTT+AGG - chr5.4:59702019-59702038 MS.gene26304:CDS 25.0%
!! TTTGTTGATTGAAAAGTGTA+GGG - chr5.4:59701429-59701448 MS.gene26304:intron 25.0%
!!! TTACTCCAATTTTAGGTTTA+AGG - chr5.4:59702026-59702045 MS.gene26304:CDS 25.0%
AAACTTATTCAATGAGTCCA+TGG - chr5.4:59701381-59701400 MS.gene26304:CDS 30.0%
AAGTCTGAATAAAATTGCAG+TGG - chr5.4:59701747-59701766 MS.gene26304:CDS 30.0%
AGAGACCTTAAACCTAAAAT+TGG + chr5.4:59702034-59702053 None:intergenic 30.0%
ATAGCAAAGAAAGGTAAAGA+AGG - chr5.4:59701830-59701849 MS.gene26304:CDS 30.0%
TAGCAAAGAAAGGTAAAGAA+GGG - chr5.4:59701831-59701850 MS.gene26304:CDS 30.0%
TGCATCCATATTACTACTTA+AGG - chr5.4:59701192-59701211 MS.gene26304:CDS 30.0%
! CTTCTTTGATATGTTGATGA+TGG - chr5.4:59701925-59701944 MS.gene26304:CDS 30.0%
! TTGTTGATTGAAAAGTGTAG+GGG - chr5.4:59701430-59701449 MS.gene26304:intron 30.0%
!! ATTAAGTTGATTTCTTCAGC+TGG - chr5.4:59701986-59702005 MS.gene26304:CDS 30.0%
AAAGAAAGGTAAAGAAGGGA+AGG - chr5.4:59701835-59701854 MS.gene26304:CDS 35.0%
AAGAGAGAAACGAGAAAGAA+TGG - chr5.4:59701963-59701982 MS.gene26304:CDS 35.0%
AAGGATGCAATAGCAAAGAA+AGG - chr5.4:59701821-59701840 MS.gene26304:CDS 35.0%
CTTCTCTCAACATAATGTCA+CGG - chr5.4:59701135-59701154 MS.gene26304:CDS 35.0%
TGCTAAATCATTCCCACAAA+TGG - chr5.4:59701519-59701538 MS.gene26304:intron 35.0%
TTGTGGGAATGATTTAGCAA+GGG + chr5.4:59701518-59701537 None:intergenic 35.0%
TTTGTGGGAATGATTTAGCA+AGG + chr5.4:59701519-59701538 None:intergenic 35.0%
!! ATCCAATTTTGACAAATCCG+TGG - chr5.4:59701257-59701276 MS.gene26304:CDS 35.0%
!! ATTCAATGGATTGGAGTCAT+TGG - chr5.4:59701456-59701475 MS.gene26304:intron 35.0%
AATACACTGCACTCCATTTG+TGG + chr5.4:59701535-59701554 None:intergenic 40.0%
ATACACTGCACTCCATTTGT+GGG + chr5.4:59701534-59701553 None:intergenic 40.0%
CAAGTAGAGAATTGATGCCA+CGG + chr5.4:59701277-59701296 None:intergenic 40.0%
GAAGGTGATTGTGATAGACA+TGG - chr5.4:59701853-59701872 MS.gene26304:CDS 40.0%
GATTGTGATAGACATGGTGT+TGG - chr5.4:59701859-59701878 MS.gene26304:CDS 40.0%
TAATCGAGTATCACTTGCCA+TGG + chr5.4:59701401-59701420 None:intergenic 40.0%
TGCAGTGGATATTGCATGAT+TGG - chr5.4:59701762-59701781 MS.gene26304:CDS 40.0%
TGCCACGGATTTGTCAAAAT+TGG + chr5.4:59701262-59701281 None:intergenic 40.0%
TTCAACAAAATGGCGTCTGT+TGG + chr5.4:59701640-59701659 None:intergenic 40.0%
! ACCACATTTGAAACGACACA+CGG - chr5.4:59701316-59701335 MS.gene26304:CDS 40.0%
! ATGGTGTTGGAAAGTGAGAA+GGG - chr5.4:59701872-59701891 MS.gene26304:CDS 40.0%
! TTGGAGTCATTGGTTGATGT+TGG - chr5.4:59701466-59701485 MS.gene26304:intron 40.0%
!! AACAGACGCCATTTTGTTGA+AGG - chr5.4:59701639-59701658 MS.gene26304:CDS 40.0%
!! AAGTGTAGGGGAGTATTCAA+TGG - chr5.4:59701442-59701461 MS.gene26304:intron 40.0%
!! ACGAAAGGTGTCATACTCAT+TGG + chr5.4:59701223-59701242 None:intergenic 40.0%
!! TAGGGGAGTATTCAATGGAT+TGG - chr5.4:59701447-59701466 MS.gene26304:intron 40.0%
!! TGTGTCGTTTCAAATGTGGT+AGG + chr5.4:59701316-59701335 None:intergenic 40.0%
!! TTGATGATGGTAGTACTCAC+AGG - chr5.4:59701938-59701957 MS.gene26304:CDS 40.0%
AACAAAATGGCGTCTGTTGG+AGG + chr5.4:59701637-59701656 None:intergenic 45.0%
CGTGGCATCAATTCTCTACT+TGG - chr5.4:59701275-59701294 MS.gene26304:CDS 45.0%
GACACACGGGATGTTGATAT+GGG - chr5.4:59701330-59701349 MS.gene26304:CDS 45.0%
! CATGGTGTTGGAAAGTGAGA+AGG - chr5.4:59701871-59701890 MS.gene26304:CDS 45.0%
! CCACATTTGAAACGACACAC+GGG - chr5.4:59701317-59701336 MS.gene26304:CDS 45.0%
! GAGTCATTGGTTGATGTTGG+AGG - chr5.4:59701469-59701488 MS.gene26304:intron 45.0%
! TCATTGGTTGATGTTGGAGG+AGG - chr5.4:59701472-59701491 MS.gene26304:intron 45.0%
! TTGATGTTGGAGGAGGCATA+GGG - chr5.4:59701479-59701498 MS.gene26304:intron 45.0%
CGACACACGGGATGTTGATA+TGG - chr5.4:59701329-59701348 MS.gene26304:CDS 50.0%
GATCTCCCACATGTTGTCGA+TGG - chr5.4:59701556-59701575 MS.gene26304:CDS 50.0%
GCAAGCCATCGACAACATGT+GGG + chr5.4:59701564-59701583 None:intergenic 50.0%
TGCAAGCCATCGACAACATG+TGG + chr5.4:59701565-59701584 None:intergenic 50.0%
TTTAGCAAGGGCCTTTGCCA+TGG + chr5.4:59701506-59701525 None:intergenic 50.0%
! CATGTTGTCGATGGCTTGCA+AGG - chr5.4:59701565-59701584 MS.gene26304:CDS 50.0%
! GTTGATGTTGGAGGAGGCAT+AGG - chr5.4:59701478-59701497 MS.gene26304:intron 50.0%
!! CCCGTGTGTCGTTTCAAATG+TGG + chr5.4:59701320-59701339 None:intergenic 50.0%
AGGCATAGGGACCATGGCAA+AGG - chr5.4:59701492-59701511 MS.gene26304:intron 55.0%
! TCGAGCATCGCATGCACGAA+AGG + chr5.4:59701238-59701257 None:intergenic 55.0%
! TGGAGGAGGCATAGGGACCA+TGG - chr5.4:59701486-59701505 MS.gene26304:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 59701118 59702072 59701118 ID=MS.gene26304
chr5.4 mRNA 59701118 59702072 59701118 ID=MS.gene26304.t1;Parent=MS.gene26304
chr5.4 exon 59701530 59702072 59701530 ID=MS.gene26304.t1.exon1;Parent=MS.gene26304.t1
chr5.4 CDS 59701530 59702072 59701530 ID=cds.MS.gene26304.t1;Parent=MS.gene26304.t1
chr5.4 exon 59701118 59701423 59701118 ID=MS.gene26304.t1.exon2;Parent=MS.gene26304.t1
chr5.4 CDS 59701118 59701423 59701118 ID=cds.MS.gene26304.t1;Parent=MS.gene26304.t1
Gene Sequence

>MS.gene26304

ATGACTCATTCTGGTTTCTTCTCTCAACATAATGTCACGGAGAATGAGCTAGAAATTGAGTATATGTTAACTGATGCATCCATATTACTACTTAAGGACAATCCAATGAGTATGACACCTTTCGTGCATGCGATGCTCGATCCAATTTTGACAAATCCGTGGCATCAATTCTCTACTTGGTTAAAAAATGACGATCCTACCACATTTGAAACGACACACGGGATGTTGATATGGGATTATACTGAACGTGACTCTAAATTTAGAAACTTATTCAATGAGTCCATGGCAAGTGATACTCGATTAGTGACCAATTTGTTGATTGAAAAGTGTAGGGGAGTATTCAATGGATTGGAGTCATTGGTTGATGTTGGAGGAGGCATAGGGACCATGGCAAAGGCCCTTGCTAAATCATTCCCACAAATGGAGTGCAGTGTATTTGATCTCCCACATGTTGTCGATGGCTTGCAAGGTAGTGATAATTTAAACTATGTTGGTGGAGACATGTTCAAAGAAATTCCTCCAACAGACGCCATTTTGTTGAAGGTAAAATGTTACAACATTCATTTAAATATATGTGAATATTTCACGTTACGTATTTTCTTTTATCTATGTTCTTTAGTAATCAATCAAAGTCTGAATAAAATTGCAGTGGATATTGCATGATTGGAATGACGATGAATGTGTAAAAATATTAAGGAATTGTAAGGATGCAATAGCAAAGAAAGGTAAAGAAGGGAAGGTGATTGTGATAGACATGGTGTTGGAAAGTGAGAAGGGAAACATTAAAGAATCAGTTGAAACACAACTCTTCTTTGATATGTTGATGATGGTAGTACTCACAGGAAAAGAGAGAAACGAGAAAGAATGGATTAAGTTGATTTCTTCAGCTGGTTTTAGTGACTACAAGATTACTCCAATTTTAGGTTTAAGGTCTCTAATTGAGATATATCCATAA
Protein sequence

>MS.gene26304.t1

MTHSGFFSQHNVTENELEIEYMLTDASILLLKDNPMSMTPFVHAMLDPILTNPWHQFSTWLKNDDPTTFETTHGMLIWDYTERDSKFRNLFNESMASDTRLVTNLLIEKCRGVFNGLESLVDVGGGIGTMAKALAKSFPQMECSVFDLPHVVDGLQGSDNLNYVGGDMFKEIPPTDAILLKWILHDWNDDECVKILRNCKDAIAKKGKEGKVIVIDMVLESEKGNIKESVETQLFFDMLMMVVLTGKERNEKEWIKLISSAGFSDYKITPILGLRSLIEIYP