Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26498.t1 | KEH24264.1 | 94.4 | 896 | 41 | 3 | 1 | 895 | 1 | 888 | 0.00E+00 | 1656.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26498.t1 | Q9C585 | 47.1 | 876 | 411 | 14 | 41 | 895 | 25 | 869 | 1.7e-208 | 727.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26498.t1 | A0A072U3G0 | 94.4 | 896 | 41 | 3 | 1 | 895 | 1 | 888 | 0.0e+00 | 1656.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051800 | MS.gene26498 | 0.808759 | 2.65E-50 | -1.69E-46 |
MS.gene05686 | MS.gene26498 | 0.812122 | 4.97E-51 | -1.69E-46 |
MS.gene057598 | MS.gene26498 | 0.807982 | 3.87E-50 | -1.69E-46 |
MS.gene057601 | MS.gene26498 | 0.802526 | 5.38E-49 | -1.69E-46 |
MS.gene058919 | MS.gene26498 | 0.818157 | 2.27E-52 | -1.69E-46 |
MS.gene05897 | MS.gene26498 | 0.810996 | 8.73E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26498.t1 | MTR_7g106570 | 94.420 | 896 | 41 | 3 | 1 | 895 | 1 | 888 | 0.0 | 1640 |
MS.gene26498.t1 | MTR_2g087710 | 51.181 | 889 | 378 | 19 | 26 | 895 | 11 | 862 | 0.0 | 827 |
MS.gene26498.t1 | MTR_7g088760 | 40.423 | 898 | 459 | 17 | 40 | 895 | 38 | 901 | 0.0 | 644 |
MS.gene26498.t1 | MTR_1g077980 | 45.091 | 825 | 388 | 17 | 103 | 895 | 120 | 911 | 0.0 | 633 |
MS.gene26498.t1 | MTR_7g088760 | 39.672 | 915 | 459 | 18 | 40 | 895 | 38 | 918 | 0.0 | 632 |
MS.gene26498.t1 | MTR_1g014260 | 26.818 | 220 | 125 | 5 | 691 | 892 | 321 | 522 | 4.62e-20 | 95.9 |
MS.gene26498.t1 | MTR_3g100480 | 34.667 | 150 | 91 | 4 | 749 | 895 | 744 | 889 | 1.54e-18 | 91.7 |
MS.gene26498.t1 | MTR_1g014680 | 33.333 | 153 | 95 | 4 | 746 | 895 | 339 | 487 | 2.59e-17 | 87.4 |
MS.gene26498.t1 | MTR_4g115880 | 28.313 | 166 | 95 | 5 | 749 | 892 | 415 | 578 | 4.79e-17 | 86.3 |
MS.gene26498.t1 | MTR_8g090190 | 33.929 | 168 | 86 | 7 | 745 | 895 | 204 | 363 | 6.02e-17 | 84.0 |
MS.gene26498.t1 | MTR_5g066000 | 31.373 | 153 | 97 | 4 | 746 | 895 | 699 | 846 | 6.66e-17 | 86.3 |
MS.gene26498.t1 | MTR_6g022310 | 37.008 | 127 | 76 | 3 | 769 | 894 | 302 | 425 | 6.99e-17 | 85.9 |
MS.gene26498.t1 | MTR_6g022300 | 35.915 | 142 | 85 | 4 | 754 | 894 | 229 | 365 | 7.08e-17 | 85.9 |
MS.gene26498.t1 | MTR_8g471100 | 33.929 | 168 | 96 | 6 | 735 | 894 | 346 | 506 | 3.03e-16 | 83.6 |
MS.gene26498.t1 | MTR_8g067060 | 33.929 | 168 | 96 | 6 | 735 | 894 | 337 | 497 | 3.06e-16 | 83.6 |
MS.gene26498.t1 | MTR_3g087140 | 33.333 | 168 | 87 | 7 | 745 | 895 | 204 | 363 | 3.09e-16 | 82.0 |
MS.gene26498.t1 | MTR_4g130940 | 34.932 | 146 | 90 | 5 | 749 | 892 | 251 | 393 | 3.68e-16 | 83.6 |
MS.gene26498.t1 | MTR_6g022290 | 36.220 | 127 | 77 | 3 | 769 | 894 | 204 | 327 | 4.68e-16 | 82.8 |
MS.gene26498.t1 | MTR_4g130940 | 34.932 | 146 | 90 | 5 | 749 | 892 | 251 | 393 | 4.71e-16 | 83.6 |
MS.gene26498.t1 | MTR_5g032380 | 32.886 | 149 | 93 | 4 | 749 | 894 | 582 | 726 | 9.83e-16 | 82.4 |
MS.gene26498.t1 | MTR_2g071620 | 32.667 | 150 | 92 | 4 | 749 | 894 | 625 | 769 | 6.03e-15 | 80.1 |
MS.gene26498.t1 | MTR_3g100480 | 29.775 | 178 | 92 | 5 | 749 | 895 | 744 | 919 | 1.09e-14 | 79.3 |
MS.gene26498.t1 | MTR_3g083600 | 31.754 | 211 | 90 | 8 | 270 | 469 | 219 | 386 | 1.19e-14 | 79.0 |
MS.gene26498.t1 | MTR_5g030360 | 33.557 | 149 | 93 | 5 | 749 | 894 | 304 | 449 | 3.08e-14 | 77.4 |
MS.gene26498.t1 | MTR_5g430360 | 33.557 | 149 | 93 | 5 | 749 | 894 | 136 | 281 | 4.60e-14 | 76.6 |
MS.gene26498.t1 | MTR_2g070390 | 30.000 | 150 | 101 | 3 | 747 | 895 | 183 | 329 | 4.23e-12 | 70.5 |
MS.gene26498.t1 | MTR_0279s0020 | 37.008 | 127 | 68 | 5 | 770 | 892 | 172 | 290 | 6.68e-12 | 68.6 |
MS.gene26498.t1 | MTR_0279s0020 | 37.008 | 127 | 68 | 5 | 770 | 892 | 163 | 281 | 1.03e-11 | 67.4 |
MS.gene26498.t1 | MTR_2g060050 | 31.655 | 139 | 83 | 4 | 764 | 895 | 399 | 532 | 3.16e-11 | 67.4 |
MS.gene26498.t1 | MTR_4g077490 | 32.500 | 120 | 76 | 2 | 780 | 894 | 423 | 542 | 7.80e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26498.t1 | AT5G22030 | 50.513 | 877 | 380 | 16 | 41 | 895 | 25 | 869 | 0.0 | 805 |
MS.gene26498.t1 | AT5G22030 | 48.096 | 919 | 381 | 19 | 41 | 895 | 25 | 911 | 0.0 | 777 |
MS.gene26498.t1 | AT2G40930 | 40.737 | 896 | 471 | 19 | 40 | 894 | 39 | 915 | 0.0 | 641 |
MS.gene26498.t1 | AT2G40930 | 40.737 | 896 | 471 | 19 | 40 | 894 | 39 | 915 | 0.0 | 641 |
MS.gene26498.t1 | AT1G32850 | 42.336 | 822 | 402 | 14 | 102 | 895 | 103 | 880 | 0.0 | 600 |
MS.gene26498.t1 | AT4G10590 | 43.382 | 816 | 408 | 18 | 105 | 895 | 108 | 894 | 0.0 | 599 |
MS.gene26498.t1 | AT4G10590 | 43.382 | 816 | 408 | 18 | 105 | 895 | 108 | 894 | 0.0 | 599 |
MS.gene26498.t1 | AT4G10590 | 43.382 | 816 | 408 | 18 | 105 | 895 | 108 | 894 | 0.0 | 599 |
MS.gene26498.t1 | AT4G10590 | 43.382 | 816 | 408 | 18 | 105 | 895 | 108 | 894 | 0.0 | 599 |
MS.gene26498.t1 | AT4G10570 | 42.718 | 824 | 409 | 19 | 102 | 895 | 105 | 895 | 0.0 | 592 |
MS.gene26498.t1 | AT4G24560 | 37.931 | 145 | 82 | 5 | 754 | 895 | 708 | 847 | 1.19e-19 | 95.5 |
MS.gene26498.t1 | AT5G57990 | 37.692 | 130 | 68 | 5 | 768 | 892 | 286 | 407 | 1.22e-17 | 88.6 |
MS.gene26498.t1 | AT5G46740 | 33.529 | 170 | 105 | 6 | 729 | 894 | 94 | 259 | 1.93e-17 | 87.0 |
MS.gene26498.t1 | AT2G32780 | 33.166 | 199 | 104 | 6 | 277 | 469 | 187 | 362 | 2.09e-17 | 88.2 |
MS.gene26498.t1 | AT2G32780 | 34.848 | 132 | 68 | 5 | 780 | 895 | 954 | 1083 | 2.66e-13 | 74.7 |
MS.gene26498.t1 | AT5G46740 | 33.529 | 170 | 105 | 6 | 729 | 894 | 303 | 468 | 3.25e-17 | 87.0 |
MS.gene26498.t1 | AT1G17110 | 34.228 | 149 | 91 | 4 | 749 | 894 | 603 | 747 | 3.82e-17 | 87.0 |
MS.gene26498.t1 | AT1G17110 | 34.228 | 149 | 91 | 4 | 749 | 894 | 599 | 743 | 4.08e-17 | 87.0 |
MS.gene26498.t1 | AT1G17110 | 34.228 | 149 | 91 | 4 | 749 | 894 | 599 | 743 | 4.08e-17 | 87.0 |
MS.gene26498.t1 | AT2G24640 | 33.333 | 153 | 95 | 4 | 746 | 895 | 162 | 310 | 6.25e-17 | 85.5 |
MS.gene26498.t1 | AT4G31670 | 32.667 | 150 | 94 | 4 | 749 | 895 | 329 | 474 | 7.15e-17 | 85.9 |
MS.gene26498.t1 | AT5G65450 | 33.735 | 166 | 100 | 4 | 736 | 894 | 470 | 632 | 7.16e-17 | 85.9 |
MS.gene26498.t1 | AT5G65450 | 33.735 | 166 | 100 | 4 | 736 | 894 | 489 | 651 | 7.20e-17 | 85.9 |
MS.gene26498.t1 | AT2G24640 | 33.333 | 153 | 95 | 4 | 746 | 895 | 332 | 480 | 1.19e-16 | 85.1 |
MS.gene26498.t1 | AT4G17895 | 34.266 | 143 | 89 | 4 | 754 | 894 | 336 | 475 | 2.52e-16 | 84.3 |
MS.gene26498.t1 | AT1G04860 | 31.250 | 240 | 118 | 8 | 232 | 465 | 185 | 383 | 5.87e-16 | 83.2 |
MS.gene26498.t1 | AT1G04860 | 35.156 | 128 | 69 | 5 | 780 | 895 | 832 | 957 | 7.64e-12 | 70.1 |
MS.gene26498.t1 | AT2G22310 | 32.338 | 201 | 109 | 9 | 700 | 884 | 113 | 302 | 7.83e-16 | 80.1 |
MS.gene26498.t1 | AT2G22310 | 32.338 | 201 | 109 | 9 | 700 | 884 | 118 | 307 | 8.61e-16 | 80.1 |
MS.gene26498.t1 | AT4G39910 | 30.043 | 233 | 119 | 10 | 693 | 895 | 149 | 367 | 1.08e-15 | 80.5 |
MS.gene26498.t1 | AT2G22310 | 32.338 | 201 | 109 | 9 | 700 | 884 | 150 | 339 | 1.23e-15 | 80.1 |
MS.gene26498.t1 | AT5G10790 | 26.347 | 167 | 96 | 4 | 753 | 894 | 237 | 401 | 9.63e-15 | 78.2 |
MS.gene26498.t1 | AT5G10790 | 30.811 | 185 | 105 | 5 | 286 | 469 | 45 | 207 | 2.97e-11 | 67.0 |
MS.gene26498.t1 | AT5G10790 | 26.347 | 167 | 96 | 4 | 753 | 894 | 366 | 530 | 2.40e-14 | 77.4 |
MS.gene26498.t1 | AT5G10790 | 30.811 | 185 | 105 | 5 | 286 | 469 | 174 | 336 | 3.81e-11 | 67.4 |
MS.gene26498.t1 | AT4G30890 | 36.975 | 119 | 69 | 3 | 780 | 895 | 436 | 551 | 1.74e-13 | 74.7 |
MS.gene26498.t1 | AT4G30890 | 36.975 | 119 | 69 | 3 | 780 | 895 | 436 | 551 | 1.74e-13 | 74.7 |
MS.gene26498.t1 | AT4G30890 | 36.975 | 119 | 69 | 3 | 780 | 895 | 436 | 551 | 1.74e-13 | 74.7 |
MS.gene26498.t1 | AT3G14400 | 30.000 | 150 | 101 | 3 | 746 | 894 | 188 | 334 | 3.16e-13 | 73.9 |
Find 200 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTATTGCTTCAAAGTTAT+TGG | 0.119233 | 7.3:+7652017 | None:intergenic |
AATAATGCAGCGAAAGATTT+TGG | 0.119350 | 7.3:-7655649 | MS.gene26498:CDS |
CACATCTATGCAGGTTCTTC+TGG | 0.178234 | 7.3:-7654881 | MS.gene26498:intron |
GTGTTCTCTTGGTGAATAAT+TGG | 0.189614 | 7.3:+7651764 | None:intergenic |
GATGATTGCAGTTGTATATT+TGG | 0.203836 | 7.3:-7655233 | MS.gene26498:intron |
GGAGAACTTGCTTTATCTTT+TGG | 0.211750 | 7.3:-7654406 | MS.gene26498:CDS |
CTTAGACAGCTGTGGGTTCC+TGG | 0.229059 | 7.3:-7654376 | MS.gene26498:CDS |
GGAACACTTAAGGATCTAAT+TGG | 0.256966 | 7.3:-7653566 | MS.gene26498:CDS |
GGCAGAGATAGGTACATAAA+AGG | 0.260290 | 7.3:+7653686 | None:intergenic |
GTGCTTCCATTCATCGTAAC+AGG | 0.261346 | 7.3:+7654760 | None:intergenic |
TTGTATATTTGGGACTTCTC+TGG | 0.269841 | 7.3:-7655222 | MS.gene26498:CDS |
GCATCCTTAACTTCATGATA+TGG | 0.282634 | 7.3:+7654053 | None:intergenic |
TGTTCTCTTGGTGAATAATT+GGG | 0.286513 | 7.3:+7651765 | None:intergenic |
GACAGCTACCTCCAGATTTC+CGG | 0.286587 | 7.3:+7651858 | None:intergenic |
CTAAATGAAGTTGATGAATT+AGG | 0.293432 | 7.3:-7652045 | MS.gene26498:CDS |
ATAGAAACCTTCTTGCAAAA+AGG | 0.299105 | 7.3:+7653719 | None:intergenic |
TGCAGTATGGCCATGATAAA+TGG | 0.301435 | 7.3:-7650672 | MS.gene26498:intron |
CGCAATGTTGTCCGGAAATC+TGG | 0.304928 | 7.3:-7651869 | MS.gene26498:CDS |
GAATTCTATTTATTACTTCC+TGG | 0.308813 | 7.3:-7651937 | MS.gene26498:CDS |
ATAGTTGTTTGCTGTTACAT+AGG | 0.334670 | 7.3:+7654723 | None:intergenic |
TGAGAAGATTAAGAGTTTAG+AGG | 0.334851 | 7.3:-7658943 | MS.gene26498:CDS |
GAATAGTGCCATTCAGTGTT+TGG | 0.337021 | 7.3:-7654623 | MS.gene26498:CDS |
ATTTGTTCCCTTTGCAACTT+AGG | 0.344486 | 7.3:-7655594 | MS.gene26498:CDS |
TATAGAGCAGTTCGATCTTT+AGG | 0.344505 | 7.3:-7654685 | MS.gene26498:CDS |
AAATGAACAACAAGAATTTC+AGG | 0.345332 | 7.3:+7651366 | None:intergenic |
AACTTAGGATATTTGTTTCA+TGG | 0.350806 | 7.3:-7655579 | MS.gene26498:CDS |
CTTCTGGAGTTACAAGTTCA+TGG | 0.357694 | 7.3:-7654865 | MS.gene26498:CDS |
TTCGGGGCGGCATTATGCTT+TGG | 0.369064 | 7.3:-7658913 | MS.gene26498:CDS |
ATTTGTCACTACGGCGGGTT+AGG | 0.372654 | 7.3:-7651204 | MS.gene26498:CDS |
TCTACTAACCACATGTCTTC+TGG | 0.375523 | 7.3:+7651682 | None:intergenic |
GCACGTAACCAAACACCTTC+AGG | 0.384086 | 7.3:+7658888 | None:intergenic |
CTTTGGTTCCTGAAGGTGTT+TGG | 0.387180 | 7.3:-7658896 | MS.gene26498:CDS |
GAACACTTAAGGATCTAATT+GGG | 0.389586 | 7.3:-7653565 | MS.gene26498:CDS |
CTTTGTCATTTAGTAAAAGC+TGG | 0.394433 | 7.3:+7655190 | None:intergenic |
TTGACAGGATTACATAATCT+TGG | 0.395148 | 7.3:-7654661 | MS.gene26498:CDS |
GGTTCCTGGAGCATCACCTT+TGG | 0.399161 | 7.3:-7654362 | MS.gene26498:CDS |
AATTCTATTTATTACTTCCT+GGG | 0.404474 | 7.3:-7651936 | MS.gene26498:CDS |
ATGATTGCAGTTGTATATTT+GGG | 0.407246 | 7.3:-7655232 | MS.gene26498:intron |
TATTGATTCTTGTGTTCTCT+TGG | 0.410871 | 7.3:+7651753 | None:intergenic |
TTTATTGTCTCCTCATCAGC+AGG | 0.413925 | 7.3:+7650622 | None:intergenic |
AGTTGCAAAGGGAACAAATC+TGG | 0.415689 | 7.3:+7655598 | None:intergenic |
TGACTTCCCAACTAATGATC+TGG | 0.415785 | 7.3:-7651292 | MS.gene26498:CDS |
AGGTTTGAAGGTAGCATCTT+CGG | 0.420300 | 7.3:-7652225 | MS.gene26498:CDS |
CCTGCGTGATTCATTGCCTC+AGG | 0.425459 | 7.3:-7651797 | MS.gene26498:CDS |
ATATACAGATTTACAAGAAT+AGG | 0.428324 | 7.3:-7653333 | MS.gene26498:intron |
AAGATTAAGAGTTTAGAGGC+AGG | 0.431998 | 7.3:-7658939 | MS.gene26498:CDS |
GGTATGAGTTTGATGATAGC+AGG | 0.436643 | 7.3:-7650651 | MS.gene26498:CDS |
CCTCTCTCAAGAAGGCTTCA+AGG | 0.437347 | 7.3:+7651716 | None:intergenic |
CAAGCCATATCATGAAGTTA+AGG | 0.438522 | 7.3:-7654057 | MS.gene26498:CDS |
TAGTTGTTTGCTGTTACATA+GGG | 0.441607 | 7.3:+7654724 | None:intergenic |
ACTTAGGATATTTGTTTCAT+GGG | 0.442847 | 7.3:-7655578 | MS.gene26498:CDS |
TGTATATTTGGGACTTCTCT+GGG | 0.443230 | 7.3:-7655221 | MS.gene26498:CDS |
GCATATAACATATAACAGTT+TGG | 0.443886 | 7.3:+7651231 | None:intergenic |
CCGTTGTGTAGGGTCAGTTC+CGG | 0.445373 | 7.3:-7653757 | MS.gene26498:intron |
TATCTTTGCTACCAGTGAAC+TGG | 0.447519 | 7.3:+7655552 | None:intergenic |
TCTTCTGCCACTTCTCCATC+TGG | 0.454902 | 7.3:+7654020 | None:intergenic |
GACAAATCCAGATCATTAGT+TGG | 0.458418 | 7.3:+7651285 | None:intergenic |
GGGTTTACCTTCTCCCCTAC+AGG | 0.459921 | 7.3:-7659311 | MS.gene26498:intron |
GGTTGACCGGAAGAATCATT+TGG | 0.461009 | 7.3:+7655159 | None:intergenic |
GACAACATTGCGGCAGGTAA+TGG | 0.461014 | 7.3:+7651880 | None:intergenic |
GTTCGATCTTTAGGCTTGAC+AGG | 0.467128 | 7.3:-7654676 | MS.gene26498:CDS |
GGAGACCCTGTTACGATGAA+TGG | 0.468448 | 7.3:-7654766 | MS.gene26498:CDS |
GAAATTGAGGTGATCGGAGT+CGG | 0.478489 | 7.3:+7659344 | None:intergenic |
ACAAATCCAGATCATTAGTT+GGG | 0.478533 | 7.3:+7651286 | None:intergenic |
TTTGGTTACGTGCTCTCAAA+CGG | 0.481434 | 7.3:-7658878 | MS.gene26498:intron |
ATCGGAGAAGTAATCGTTAT+CGG | 0.481528 | 7.3:+7659413 | None:intergenic |
GATAAATTATGAAAATCCCT+TGG | 0.482249 | 7.3:-7654551 | MS.gene26498:CDS |
CCCTATCGAGTGCGAAATTG+AGG | 0.485046 | 7.3:+7659331 | None:intergenic |
CAATTATTTGTCACTACGGC+GGG | 0.486405 | 7.3:-7651209 | MS.gene26498:CDS |
CCTCAATTTCGCACTCGATA+GGG | 0.487521 | 7.3:-7659331 | MS.gene26498:CDS |
AAATTGAGGTGATCGGAGTC+GGG | 0.492118 | 7.3:+7659345 | None:intergenic |
ATTGTCCGTGTCGTTGTAGA+AGG | 0.492397 | 7.3:+7653659 | None:intergenic |
TCTTGAGAGAGGAACCTCTT+GGG | 0.493315 | 7.3:-7651705 | MS.gene26498:CDS |
AGTTACAAGGGGAGGTTTGA+AGG | 0.494402 | 7.3:-7652237 | MS.gene26498:CDS |
TAGAAGGCAATGGCAGAGAT+AGG | 0.494913 | 7.3:+7653675 | None:intergenic |
TTCTTGAGAGAGGAACCTCT+TGG | 0.498311 | 7.3:-7651706 | MS.gene26498:CDS |
TGGACTTGCAGATTCAATGA+AGG | 0.502276 | 7.3:-7654845 | MS.gene26498:CDS |
TGAAGGGTAGTCAGAGCAAT+GGG | 0.504117 | 7.3:-7654828 | MS.gene26498:CDS |
CATTATGCTTTGGTTCCTGA+AGG | 0.505866 | 7.3:-7658903 | MS.gene26498:CDS |
ATAAATTATGAAAATCCCTT+GGG | 0.509578 | 7.3:-7654550 | MS.gene26498:CDS |
ACAAATATCCTAAGTTGCAA+AGG | 0.509855 | 7.3:+7655586 | None:intergenic |
TTACCTGCCGCAATGTTGTC+CGG | 0.510296 | 7.3:-7651877 | MS.gene26498:CDS |
GAGAAGTGGCAGAAGAGTAT+TGG | 0.511116 | 7.3:-7654013 | MS.gene26498:CDS |
AACTTTGCTCCTCAGTTCAG+TGG | 0.511426 | 7.3:-7654310 | MS.gene26498:CDS |
ACAAGTCTGGTGAGCGACAT+AGG | 0.512582 | 7.3:+7651260 | None:intergenic |
GCTTCATCTGAAGAAGGAAG+AGG | 0.516078 | 7.3:-7658970 | MS.gene26498:CDS |
CAAACTCATACCATTTATCA+TGG | 0.516199 | 7.3:+7650662 | None:intergenic |
TAGAAAAGAACATAAGCAGC+AGG | 0.516914 | 7.3:+7650595 | None:intergenic |
CAGAGAACAAGAAGCAGCTA+AGG | 0.517079 | 7.3:+7653541 | None:intergenic |
TGTCATGTATTACAGTTACA+AGG | 0.518363 | 7.3:-7652250 | MS.gene26498:intron |
TATGCAATTATTTGTCACTA+CGG | 0.518434 | 7.3:-7651213 | MS.gene26498:CDS |
AATGATTCTTCCGGTCAACC+TGG | 0.518763 | 7.3:-7655156 | MS.gene26498:CDS |
TTCTTGTTGTTCATTTGAAG+AGG | 0.520377 | 7.3:-7651359 | MS.gene26498:CDS |
ACCTCAATTTCGCACTCGAT+AGG | 0.522838 | 7.3:-7659332 | MS.gene26498:CDS |
GGGAGTAAGAGGATGAATCT+AGG | 0.524537 | 7.3:+7659388 | None:intergenic |
GTTAAGACGGAGGGAGTAAG+AGG | 0.524754 | 7.3:+7659377 | None:intergenic |
AGGATTAAAAGGTACCTGTA+GGG | 0.525521 | 7.3:+7659297 | None:intergenic |
GCAGAGATAGGTACATAAAA+GGG | 0.527153 | 7.3:+7653687 | None:intergenic |
TATTTATTACTTCCTGGGAG+AGG | 0.528115 | 7.3:-7651931 | MS.gene26498:CDS |
AGTTTGGAGATGAACAAGTC+TGG | 0.529567 | 7.3:+7651247 | None:intergenic |
GGTGCCAAAGGTGATGCTCC+AGG | 0.530919 | 7.3:+7654358 | None:intergenic |
AAAGGTACCTGTAGGGGAGA+AGG | 0.530988 | 7.3:+7659304 | None:intergenic |
GTTCTCTTGGTGAATAATTG+GGG | 0.531964 | 7.3:+7651766 | None:intergenic |
TAACTGTCATCAGCACTGAT+GGG | 0.533745 | 7.3:-7653631 | MS.gene26498:CDS |
TTGCAGAGATGATCTTCGTA+GGG | 0.533892 | 7.3:-7652169 | MS.gene26498:CDS |
TTTCCGGACAACATTGCGGC+AGG | 0.533987 | 7.3:+7651874 | None:intergenic |
CAGGGTTGCCCCTGCTGATG+AGG | 0.534715 | 7.3:-7650632 | MS.gene26498:CDS |
ATCTGGAGGTAGCTGTCGTA+TGG | 0.535101 | 7.3:-7651852 | MS.gene26498:CDS |
TTTGTCATTTAGTAAAAGCT+GGG | 0.536216 | 7.3:+7655191 | None:intergenic |
CAAATATCCTAAGTTGCAAA+GGG | 0.536446 | 7.3:+7655587 | None:intergenic |
AGATTTACTTAGACAGCTGT+GGG | 0.537919 | 7.3:-7654383 | MS.gene26498:CDS |
TTCACATACATTCATTCCCA+AGG | 0.539014 | 7.3:+7654534 | None:intergenic |
AGATTAAGAGTTTAGAGGCA+GGG | 0.540326 | 7.3:-7658938 | MS.gene26498:CDS |
GTAACTGTCATCAGCACTGA+TGG | 0.540549 | 7.3:-7653632 | MS.gene26498:CDS |
AGGGTGCCAAATGATTCTTC+CGG | 0.542227 | 7.3:-7655165 | MS.gene26498:CDS |
GATGCAGATGGTCGTCCAGA+TGG | 0.542601 | 7.3:-7654035 | MS.gene26498:CDS |
GAGATTTACTTAGACAGCTG+TGG | 0.543177 | 7.3:-7654384 | MS.gene26498:CDS |
TATCAGCTAATGAGTCAGAT+GGG | 0.546189 | 7.3:+7653275 | None:intergenic |
TTTACTAAATGACAAAGCTA+GGG | 0.548663 | 7.3:-7655184 | MS.gene26498:CDS |
TCATGCATGAAAACAACCAC+GGG | 0.549444 | 7.3:+7653196 | None:intergenic |
GAGAGATGATGAAACCCTCT+TGG | 0.550344 | 7.3:-7653519 | MS.gene26498:CDS |
GATTACAGATAGGTCTGAGA+TGG | 0.551432 | 7.3:-7654803 | MS.gene26498:CDS |
TTCCGGTCAACCTGGAAAAG+AGG | 0.554218 | 7.3:-7655148 | MS.gene26498:intron |
TTCATGGGAAACCAGTTCAC+TGG | 0.554289 | 7.3:-7655563 | MS.gene26498:CDS |
CACTACGGCGGGTTAGGAGG+AGG | 0.555739 | 7.3:-7651198 | MS.gene26498:CDS |
TAGGTACATAAAAGGGTCAA+AGG | 0.558949 | 7.3:+7653694 | None:intergenic |
TGAAACCCTCTTGGTGGCTG+AGG | 0.559800 | 7.3:-7653510 | MS.gene26498:intron |
TTACAAGTCTCACCTCTCCC+AGG | 0.562988 | 7.3:+7651919 | None:intergenic |
AATGGCACTATTCATAAAGC+AGG | 0.563096 | 7.3:+7654633 | None:intergenic |
AAGAGGTTCCTCTCTCAAGA+AGG | 0.565863 | 7.3:+7651708 | None:intergenic |
GGTAGCAAAGATAAGCGAAA+AGG | 0.567128 | 7.3:-7655542 | MS.gene26498:intron |
CTTCAGTATACTTCTGCACT+CGG | 0.567510 | 7.3:+7653224 | None:intergenic |
TGTCACTACGGCGGGTTAGG+AGG | 0.567660 | 7.3:-7651201 | MS.gene26498:CDS |
GACAAGGATGAGGATGTTGA+TGG | 0.567754 | 7.3:-7652084 | MS.gene26498:CDS |
TTTGCAGAGATGATCTTCGT+AGG | 0.568179 | 7.3:-7652170 | MS.gene26498:CDS |
ATATCAGCTAATGAGTCAGA+TGG | 0.569697 | 7.3:+7653274 | None:intergenic |
GCAATGGGATGATTACAGAT+AGG | 0.570783 | 7.3:-7654813 | MS.gene26498:CDS |
AAGGGCAAATCAATGTTGAC+CGG | 0.572908 | 7.3:+7653738 | None:intergenic |
TTATTGTCTCCTCATCAGCA+GGG | 0.576952 | 7.3:+7650623 | None:intergenic |
TGGGAGACTCTTCTATGCAG+AGG | 0.578484 | 7.3:-7655629 | MS.gene26498:CDS |
CTATTGAGTCATTGCGAGCA+AGG | 0.580952 | 7.3:+7653982 | None:intergenic |
CAGAGGATGACATACATTTG+TGG | 0.582793 | 7.3:-7651969 | MS.gene26498:CDS |
GAGATGGAATGTACTTCTAA+CGG | 0.588181 | 7.3:-7654787 | MS.gene26498:CDS |
CCTTGAAGCCTTCTTGAGAG+AGG | 0.592726 | 7.3:-7651716 | MS.gene26498:CDS |
TCACATACATTCATTCCCAA+GGG | 0.593268 | 7.3:+7654535 | None:intergenic |
TACATAGGGGATAACATCGC+CGG | 0.593444 | 7.3:+7654738 | None:intergenic |
TGTATTACAGTTACAAGGGG+AGG | 0.594427 | 7.3:-7652245 | MS.gene26498:intron |
AGATGAATATGACAAGGATG+AGG | 0.595851 | 7.3:-7652094 | MS.gene26498:CDS |
CGGGTAAGCGACGGTTAAGA+CGG | 0.595894 | 7.3:+7659364 | None:intergenic |
GTCATGTATTACAGTTACAA+GGG | 0.596674 | 7.3:-7652249 | MS.gene26498:intron |
TCGGACAGCCTTGCTACAAG+TGG | 0.601297 | 7.3:+7652198 | None:intergenic |
AGAGGATGAATCTAGGTCAT+CGG | 0.602156 | 7.3:+7659395 | None:intergenic |
TTTCATGCATGAACATGTGG+TGG | 0.602239 | 7.3:-7653185 | MS.gene26498:CDS |
GAAGGTGATGATCGTGTGGA+AGG | 0.602684 | 7.3:-7659041 | MS.gene26498:CDS |
CATGAAGTTAAGGATGCAGA+TGG | 0.605388 | 7.3:-7654047 | MS.gene26498:CDS |
GGACTTGCAGATTCAATGAA+GGG | 0.608948 | 7.3:-7654844 | MS.gene26498:CDS |
ATGAAGGGTAGTCAGAGCAA+TGG | 0.609134 | 7.3:-7654829 | MS.gene26498:CDS |
GAATTTCAGGCAATCTCCAA+AGG | 0.609561 | 7.3:+7651379 | None:intergenic |
TGGATTGATGCAGAAGGTGA+AGG | 0.609656 | 7.3:-7659065 | MS.gene26498:CDS |
TTCATGCATGAAAACAACCA+CGG | 0.612318 | 7.3:+7653195 | None:intergenic |
GGTGTGAGCCAAACACTGAA+TGG | 0.613305 | 7.3:+7654615 | None:intergenic |
CGTGTCGTTGTAGAAGGCAA+TGG | 0.613589 | 7.3:+7653665 | None:intergenic |
TCTCTCTACGATAATCTCCA+AGG | 0.617066 | 7.3:+7654572 | None:intergenic |
CACATGTCTTCTGGCCCAAG+AGG | 0.617511 | 7.3:+7651691 | None:intergenic |
GGATTAAAAGGTACCTGTAG+GGG | 0.620793 | 7.3:+7659298 | None:intergenic |
ACTGTTACGGTAATTGCAGA+AGG | 0.621222 | 7.3:+7653599 | None:intergenic |
GTATGAGTTTGATGATAGCA+GGG | 0.621854 | 7.3:-7650650 | MS.gene26498:CDS |
TGCTTCCATTCATCGTAACA+GGG | 0.622031 | 7.3:+7654761 | None:intergenic |
TGGTCGTCCAGATGGAGAAG+TGG | 0.622048 | 7.3:-7654027 | MS.gene26498:CDS |
TAAGCGACGGTTAAGACGGA+GGG | 0.626259 | 7.3:+7659368 | None:intergenic |
AACTGTCATCAGCACTGATG+GGG | 0.626789 | 7.3:-7653630 | MS.gene26498:CDS |
GTTACGATGAATGGAAGCAC+CGG | 0.630042 | 7.3:-7654757 | MS.gene26498:CDS |
GAGTGCGAAATTGAGGTGAT+CGG | 0.634959 | 7.3:+7659338 | None:intergenic |
CTCTTGGGCCAGAAGACATG+TGG | 0.635679 | 7.3:-7651690 | MS.gene26498:intron |
TATTGTCTCCTCATCAGCAG+GGG | 0.643285 | 7.3:+7650624 | None:intergenic |
GATCGGAGTCGGGTAAGCGA+CGG | 0.645146 | 7.3:+7659355 | None:intergenic |
AACACTTAAGGATCTAATTG+GGG | 0.645163 | 7.3:-7653564 | MS.gene26498:CDS |
CATTGCCTTCTACAACGACA+CGG | 0.646531 | 7.3:-7653664 | MS.gene26498:CDS |
GATGCAGAAGGTGAAGGTGA+AGG | 0.647224 | 7.3:-7659059 | MS.gene26498:CDS |
AGGTGAAGGTGATGATCGTG+TGG | 0.650244 | 7.3:-7659045 | MS.gene26498:CDS |
AGATGATGAAACCCTCTTGG+TGG | 0.650301 | 7.3:-7653516 | MS.gene26498:CDS |
GCAATTATTTGTCACTACGG+CGG | 0.653816 | 7.3:-7651210 | MS.gene26498:CDS |
CAGATTTCCGGACAACATTG+CGG | 0.656299 | 7.3:+7651870 | None:intergenic |
AGTTGTTTGCTGTTACATAG+GGG | 0.657865 | 7.3:+7654725 | None:intergenic |
AATGTTGTCCGGAAATCTGG+AGG | 0.658935 | 7.3:-7651866 | MS.gene26498:CDS |
TAATAAATAGAATTCGAAGT+CGG | 0.662876 | 7.3:+7651945 | None:intergenic |
AGTGTCGAATAGCGGTGCAG+AGG | 0.663894 | 7.3:-7651986 | MS.gene26498:CDS |
AGGTGGTGGATTGATGCAGA+AGG | 0.665012 | 7.3:-7659071 | MS.gene26498:CDS |
TCATGTATTACAGTTACAAG+GGG | 0.666488 | 7.3:-7652248 | MS.gene26498:intron |
ATCAGCTAATGAGTCAGATG+GGG | 0.669288 | 7.3:+7653276 | None:intergenic |
AACAATAGATGAATATGACA+AGG | 0.670411 | 7.3:-7652100 | MS.gene26498:CDS |
AGTGATGCAGTGTCGAATAG+CGG | 0.672711 | 7.3:-7651994 | MS.gene26498:CDS |
TGCATATAACCACTGAACTG+AGG | 0.673025 | 7.3:+7654301 | None:intergenic |
GTAAGCGACGGTTAAGACGG+AGG | 0.673663 | 7.3:+7659367 | None:intergenic |
AAAATACCTCAGCCACCAAG+AGG | 0.679697 | 7.3:+7653504 | None:intergenic |
AATTGGGGCCTGAAAACCTG+AGG | 0.687420 | 7.3:+7651781 | None:intergenic |
CCTGAGGCAATGAATCACGC+AGG | 0.691579 | 7.3:+7651797 | None:intergenic |
AAATACCTCAGCCACCAAGA+GGG | 0.700606 | 7.3:+7653505 | None:intergenic |
CATGCATGAAAACAACCACG+GGG | 0.762932 | 7.3:+7653197 | None:intergenic |
GTATACTGAAGATAGCCCCG+TGG | 0.796779 | 7.3:-7653212 | MS.gene26498:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 7650582 | 7659454 | 7650582 | ID=MS.gene26498 |
chr7.3 | mRNA | 7650582 | 7659454 | 7650582 | ID=MS.gene26498.t1;Parent=MS.gene26498 |
chr7.3 | exon | 7659312 | 7659454 | 7659312 | ID=MS.gene26498.t1.exon1;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7659312 | 7659454 | 7659312 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7658879 | 7659091 | 7658879 | ID=MS.gene26498.t1.exon2;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7658879 | 7659091 | 7658879 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7655543 | 7655684 | 7655543 | ID=MS.gene26498.t1.exon3;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7655543 | 7655684 | 7655543 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7655327 | 7655386 | 7655327 | ID=MS.gene26498.t1.exon4;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7655327 | 7655386 | 7655327 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7655149 | 7655244 | 7655149 | ID=MS.gene26498.t1.exon5;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7655149 | 7655244 | 7655149 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7654543 | 7654890 | 7654543 | ID=MS.gene26498.t1.exon6;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7654543 | 7654890 | 7654543 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7654288 | 7654428 | 7654288 | ID=MS.gene26498.t1.exon7;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7654288 | 7654428 | 7654288 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7653965 | 7654135 | 7653965 | ID=MS.gene26498.t1.exon8;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7653965 | 7654135 | 7653965 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7653511 | 7653768 | 7653511 | ID=MS.gene26498.t1.exon9;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7653511 | 7653768 | 7653511 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7653181 | 7653347 | 7653181 | ID=MS.gene26498.t1.exon10;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7653181 | 7653347 | 7653181 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7651691 | 7652257 | 7651691 | ID=MS.gene26498.t1.exon11;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7651691 | 7652257 | 7651691 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7651176 | 7651449 | 7651176 | ID=MS.gene26498.t1.exon12;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7651176 | 7651449 | 7651176 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
chr7.3 | exon | 7650582 | 7650689 | 7650582 | ID=MS.gene26498.t1.exon13;Parent=MS.gene26498.t1 |
chr7.3 | CDS | 7650582 | 7650689 | 7650582 | ID=cds.MS.gene26498.t1;Parent=MS.gene26498.t1 |
Gene Sequence |
Protein sequence |