Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26597.t1 | XP_003608122.2 | 93 | 400 | 15 | 1 | 1 | 387 | 1 | 400 | 1.40E-211 | 745.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26597.t1 | O49523 | 51.4 | 395 | 171 | 6 | 5 | 379 | 20 | 413 | 7.1e-108 | 392.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26597.t1 | G7JPP4 | 93.0 | 400 | 15 | 1 | 1 | 387 | 1 | 400 | 9.9e-212 | 745.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051131 | MS.gene26597 | 0.804837 | 1.78E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene26597 | 0.802823 | 4.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26597.t1 | MTR_4g087830 | 93.000 | 400 | 15 | 1 | 1 | 387 | 1 | 400 | 0.0 | 762 |
| MS.gene26597.t1 | MTR_4g087810 | 88.191 | 398 | 34 | 1 | 1 | 385 | 10 | 407 | 0.0 | 723 |
| MS.gene26597.t1 | MTR_2g015690 | 59.091 | 396 | 141 | 5 | 3 | 379 | 19 | 412 | 1.14e-163 | 465 |
| MS.gene26597.t1 | MTR_4g077070 | 37.931 | 435 | 213 | 11 | 1 | 387 | 97 | 522 | 4.38e-89 | 279 |
| MS.gene26597.t1 | MTR_7g096120 | 37.321 | 418 | 218 | 8 | 4 | 380 | 74 | 488 | 1.18e-87 | 274 |
| MS.gene26597.t1 | MTR_4g080100 | 38.725 | 408 | 195 | 8 | 7 | 370 | 31 | 427 | 2.94e-87 | 271 |
| MS.gene26597.t1 | MTR_7g096140 | 37.275 | 389 | 206 | 7 | 4 | 357 | 74 | 459 | 1.35e-82 | 259 |
| MS.gene26597.t1 | MTR_5g013230 | 34.204 | 383 | 183 | 13 | 4 | 337 | 135 | 497 | 1.39e-52 | 183 |
| MS.gene26597.t1 | MTR_7g081645 | 35.519 | 366 | 180 | 17 | 3 | 332 | 74 | 419 | 2.49e-50 | 174 |
| MS.gene26597.t1 | MTR_7g006400 | 38.276 | 290 | 139 | 9 | 4 | 275 | 105 | 372 | 4.08e-50 | 176 |
| MS.gene26597.t1 | MTR_4g099510 | 35.013 | 377 | 171 | 14 | 8 | 337 | 133 | 482 | 1.13e-48 | 172 |
| MS.gene26597.t1 | MTR_7g081620 | 31.486 | 397 | 193 | 16 | 4 | 336 | 69 | 450 | 1.64e-44 | 160 |
| MS.gene26597.t1 | MTR_1995s0010 | 35.586 | 222 | 116 | 4 | 118 | 314 | 1 | 220 | 3.86e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26597.t1 | AT4G18550 | 51.263 | 396 | 172 | 6 | 4 | 379 | 36 | 430 | 8.25e-139 | 403 |
| MS.gene26597.t1 | AT4G18550 | 51.263 | 396 | 172 | 6 | 4 | 379 | 19 | 413 | 1.06e-138 | 402 |
| MS.gene26597.t1 | AT1G06250 | 48.072 | 389 | 181 | 6 | 4 | 372 | 5 | 392 | 1.02e-126 | 372 |
| MS.gene26597.t1 | AT4G18550 | 49.827 | 289 | 125 | 5 | 4 | 277 | 36 | 319 | 4.19e-95 | 287 |
| MS.gene26597.t1 | AT1G06250 | 49.640 | 278 | 133 | 3 | 102 | 372 | 1 | 278 | 8.38e-90 | 273 |
| MS.gene26597.t1 | AT1G51440 | 40.000 | 420 | 193 | 12 | 3 | 374 | 86 | 494 | 3.34e-86 | 271 |
| MS.gene26597.t1 | AT2G30550 | 39.234 | 418 | 205 | 12 | 7 | 380 | 104 | 516 | 1.13e-84 | 267 |
| MS.gene26597.t1 | AT1G06800 | 38.732 | 426 | 211 | 14 | 7 | 387 | 88 | 508 | 8.91e-83 | 262 |
| MS.gene26597.t1 | AT1G30370 | 35.484 | 403 | 213 | 12 | 4 | 370 | 114 | 505 | 4.36e-73 | 237 |
| MS.gene26597.t1 | AT2G42690 | 35.523 | 411 | 216 | 8 | 1 | 372 | 1 | 401 | 2.98e-72 | 231 |
| MS.gene26597.t1 | AT2G30550 | 39.143 | 350 | 170 | 11 | 7 | 318 | 104 | 448 | 4.49e-68 | 222 |
| MS.gene26597.t1 | AT1G06800 | 38.920 | 352 | 171 | 13 | 7 | 319 | 88 | 434 | 2.02e-65 | 215 |
| MS.gene26597.t1 | AT1G05800 | 34.530 | 362 | 186 | 10 | 4 | 333 | 80 | 422 | 1.60e-53 | 184 |
| MS.gene26597.t1 | AT2G31690 | 38.112 | 286 | 152 | 6 | 4 | 275 | 88 | 362 | 7.32e-53 | 183 |
| MS.gene26597.t1 | AT4G16820 | 35.079 | 382 | 188 | 14 | 8 | 348 | 131 | 493 | 1.20e-50 | 177 |
| MS.gene26597.t1 | AT2G44810 | 32.454 | 379 | 185 | 13 | 4 | 332 | 86 | 443 | 9.44e-47 | 166 |
| MS.gene26597.t1 | AT2G44810 | 32.440 | 373 | 181 | 13 | 10 | 332 | 2 | 353 | 3.10e-45 | 159 |
Find 86 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGGGTGGTGGAGAATA+AGG | 0.186405 | 4.1:+22495432 | MS.gene26597:CDS |
| TCCAAAGTATATTTGGAAAA+AGG | 0.200965 | 4.1:+22493493 | MS.gene26597:intron |
| TGTAACTGCACATTCGATTT+AGG | 0.218692 | 4.1:-22493979 | None:intergenic |
| TATGCAAGAAGAAGACTATT+TGG | 0.263873 | 4.1:-22495199 | None:intergenic |
| CGTAAGTACTTACTACATTA+TGG | 0.283055 | 4.1:+22493379 | MS.gene26597:CDS |
| TAAAGGAGGGTTTAATTTAG+AGG | 0.288625 | 4.1:+22495339 | MS.gene26597:CDS |
| TTAACAGCTAAGGAAGCATT+AGG | 0.303858 | 4.1:+22493856 | MS.gene26597:intron |
| CCTGTCACATTATTTGCATT+TGG | 0.305993 | 4.1:+22495082 | MS.gene26597:CDS |
| TTCAAAGGATGCTTGGAGTA+TGG | 0.306662 | 4.1:+22493603 | MS.gene26597:CDS |
| CGCTGCACTATCTCTTGCTT+TGG | 0.312823 | 4.1:-22493560 | None:intergenic |
| AATCATGCGTTCTAAATTGT+AGG | 0.336214 | 4.1:+22495516 | MS.gene26597:CDS |
| GTTTATTTGCATGGAATTGC+AGG | 0.337895 | 4.1:+22495304 | MS.gene26597:CDS |
| CTTGGAGTATGGAAACAAAT+TGG | 0.350231 | 4.1:+22493614 | MS.gene26597:CDS |
| CGTGTTGGAAATTCTAACTT+TGG | 0.360641 | 4.1:+22495112 | MS.gene26597:CDS |
| AATATCACATTCCTGAGAAT+TGG | 0.362474 | 4.1:+22495413 | MS.gene26597:CDS |
| CTAGCACTAGAATCAGCTAT+TGG | 0.371790 | 4.1:-22494045 | None:intergenic |
| TGCTTGGAGAGGGACAATTC+AGG | 0.376867 | 4.1:+22493897 | MS.gene26597:CDS |
| GATCCTGCACCACTTATATT+CGG | 0.398511 | 4.1:+22493955 | MS.gene26597:CDS |
| TGATGGTACTTGGAAGCTAA+TGG | 0.402739 | 4.1:+22495471 | MS.gene26597:CDS |
| AATAAATTCAACATACCAAA+AGG | 0.412590 | 4.1:+22495040 | MS.gene26597:CDS |
| AAGTAAGTGGAAAGGTCTAT+TGG | 0.420412 | 4.1:+22493336 | MS.gene26597:CDS |
| ACTTGCAACTATAAGTTCTA+TGG | 0.425826 | 4.1:+22495006 | MS.gene26597:CDS |
| GGATGTTGCATACAAATACT+TGG | 0.442993 | 4.1:-22493539 | None:intergenic |
| TTTGCTCAAGCTACATATGA+TGG | 0.446546 | 4.1:+22493406 | MS.gene26597:CDS |
| TGATGGTTTCAACTTTGAAA+AGG | 0.449579 | 4.1:+22493423 | MS.gene26597:CDS |
| TAACAGCTAAGGAAGCATTA+GGG | 0.450387 | 4.1:+22493857 | MS.gene26597:intron |
| TGGAGGGTGGTGGAGAATAA+GGG | 0.455462 | 4.1:+22495433 | MS.gene26597:CDS |
| TGATTCTAGTGCTAGAAAAC+AGG | 0.455743 | 4.1:+22494053 | MS.gene26597:CDS |
| TTCAACAATCTGATGGTACT+TGG | 0.456136 | 4.1:+22495461 | MS.gene26597:CDS |
| AACATGGAGGTTTATTTGCA+TGG | 0.461774 | 4.1:+22495295 | MS.gene26597:CDS |
| CTATTAAACAAAAGTAATGA+TGG | 0.464521 | 4.1:+22495379 | MS.gene26597:CDS |
| AATCTAAGTACTTGAAGAGT+GGG | 0.469182 | 4.1:+22495260 | MS.gene26597:CDS |
| AACTGTCGTTGGACACAGCT+TGG | 0.475044 | 4.1:+22494976 | MS.gene26597:CDS |
| TCCACCACCCTCCAATTCTC+AGG | 0.477117 | 4.1:-22495424 | None:intergenic |
| TTGGTCACAGAATACTTGTA+AGG | 0.480981 | 4.1:-22493520 | None:intergenic |
| GGAGGGACATAGTTGTTGCT+TGG | 0.481190 | 4.1:+22493881 | MS.gene26597:CDS |
| GCTTGGAGAGGGACAATTCA+GGG | 0.489035 | 4.1:+22493898 | MS.gene26597:CDS |
| TGCATATTCAAAGGTGGGAG+AGG | 0.502064 | 4.1:+22495216 | MS.gene26597:CDS |
| CTTCTTGCATATTCAAAGGT+GGG | 0.504433 | 4.1:+22495211 | MS.gene26597:CDS |
| GAGTATGGAAACAAATTGGA+TGG | 0.512934 | 4.1:+22493618 | MS.gene26597:CDS |
| ACTGTCGTTGGACACAGCTT+GGG | 0.515205 | 4.1:+22494977 | MS.gene26597:CDS |
| GACAATTCAGGGTGCAGAGT+GGG | 0.520098 | 4.1:+22493909 | MS.gene26597:CDS |
| GAAAAGGCATCTAAGTATGC+AGG | 0.523914 | 4.1:+22493439 | MS.gene26597:CDS |
| GGACCGAATATAAGTGGTGC+AGG | 0.524592 | 4.1:-22493958 | None:intergenic |
| TCCTGAGAATTGGAGGGTGG+TGG | 0.527608 | 4.1:+22495423 | MS.gene26597:CDS |
| CATGGAATTGCAGGAACACA+AGG | 0.532517 | 4.1:+22495313 | MS.gene26597:CDS |
| ACATAGTTGTTGCTTGGAGA+GGG | 0.533659 | 4.1:+22493887 | MS.gene26597:CDS |
| CTAAGGAAGCATTAGGGAGG+AGG | 0.534094 | 4.1:+22493863 | MS.gene26597:CDS |
| AACTTAGTGGCAAAAGTAAG+TGG | 0.534655 | 4.1:+22493323 | MS.gene26597:CDS |
| ATCACATTCCTGAGAATTGG+AGG | 0.536099 | 4.1:+22495416 | MS.gene26597:CDS |
| GAAATTAGCATAACTGTCGT+TGG | 0.536154 | 4.1:+22494965 | MS.gene26597:CDS |
| CCAAATGCAAATAATGTGAC+AGG | 0.536537 | 4.1:-22495082 | None:intergenic |
| TCTTCTTGCATATTCAAAGG+TGG | 0.538213 | 4.1:+22495210 | MS.gene26597:CDS |
| GCAGGAACACAAGGAAGTAA+AGG | 0.539942 | 4.1:+22495322 | MS.gene26597:CDS |
| GATTTAGGACCGAATATAAG+TGG | 0.540170 | 4.1:-22493964 | None:intergenic |
| TCTTCTTCTTGCATATTCAA+AGG | 0.541516 | 4.1:+22495207 | MS.gene26597:CDS |
| AAACGAGATTAGCAGACTTG+TGG | 0.547519 | 4.1:+22494925 | MS.gene26597:CDS |
| TGGGGTTAGTGCACATAACA+TGG | 0.566949 | 4.1:+22495279 | MS.gene26597:CDS |
| AGTATGGAAACAAATTGGAT+GGG | 0.568664 | 4.1:+22493619 | MS.gene26597:CDS |
| GCATTTGGTTCACCTCGTGT+TGG | 0.574021 | 4.1:+22495097 | MS.gene26597:CDS |
| AAATCTAAGTACTTGAAGAG+TGG | 0.574558 | 4.1:+22495259 | MS.gene26597:CDS |
| GACATAGTTGTTGCTTGGAG+AGG | 0.575425 | 4.1:+22493886 | MS.gene26597:CDS |
| GTTGCTGTTGCCACTGATGA+AGG | 0.576148 | 4.1:+22493646 | MS.gene26597:CDS |
| TTCAACATTACCTTCATCAG+TGG | 0.579087 | 4.1:-22493656 | None:intergenic |
| ATAAATTCAACATACCAAAA+GGG | 0.580395 | 4.1:+22495041 | MS.gene26597:CDS |
| GGTGGTGGAGAATAAGGGTA+TGG | 0.582115 | 4.1:+22495438 | MS.gene26597:CDS |
| TAAGGAAGCATTAGGGAGGA+GGG | 0.586465 | 4.1:+22493864 | MS.gene26597:CDS |
| TTACGTAGGTCAATGTGTAA+AGG | 0.596130 | 4.1:-22493361 | None:intergenic |
| GGAACACAAGGAAGTAAAGG+AGG | 0.618211 | 4.1:+22495325 | MS.gene26597:CDS |
| GGTATGGTTCAACAATCTGA+TGG | 0.619750 | 4.1:+22495454 | MS.gene26597:CDS |
| AGTGGCAAAAGTAAGTGGAA+AGG | 0.625837 | 4.1:+22493328 | MS.gene26597:CDS |
| GTATGGAAACAAATTGGATG+GGG | 0.630148 | 4.1:+22493620 | MS.gene26597:CDS |
| TCGAATGTGCAGTTACACAA+TGG | 0.630838 | 4.1:+22493985 | MS.gene26597:CDS |
| TGGGTAGCATAGCAAGAACA+TGG | 0.635845 | 4.1:+22493296 | MS.gene26597:CDS |
| GTCGTTGGACACAGCTTGGG+TGG | 0.639883 | 4.1:+22494980 | MS.gene26597:CDS |
| AGAACATGGAGAGAACTTAG+TGG | 0.643312 | 4.1:+22493310 | MS.gene26597:CDS |
| GAGGAATTAGAAATCGACGC+TGG | 0.655608 | 4.1:+22495235 | MS.gene26597:CDS |
| TCACATTCCTGAGAATTGGA+GGG | 0.659641 | 4.1:+22495417 | MS.gene26597:CDS |
| ATCTAAGTACTTGAAGAGTG+GGG | 0.675113 | 4.1:+22495261 | MS.gene26597:CDS |
| AAGTTAGAATTTCCAACACG+AGG | 0.679774 | 4.1:-22495109 | None:intergenic |
| CATTCCTGAGAATTGGAGGG+TGG | 0.687333 | 4.1:+22495420 | MS.gene26597:CDS |
| GAACACAAGGAAGTAAAGGA+GGG | 0.689646 | 4.1:+22495326 | MS.gene26597:CDS |
| AATGTAGTAAGTACTTACGT+AGG | 0.694414 | 4.1:-22493375 | None:intergenic |
| CAGCTAAGGAAGCATTAGGG+AGG | 0.703114 | 4.1:+22493860 | MS.gene26597:intron |
| GGACAATTCAGGGTGCAGAG+TGG | 0.708525 | 4.1:+22493908 | MS.gene26597:CDS |
| GGTTAGTGCACATAACATGG+AGG | 0.759022 | 4.1:+22495282 | MS.gene26597:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTATAACTTTTTT+TGG | + | chr4.1:22494650-22494669 | MS.gene26597:intron | 10.0% |
| !!! | ATAGAAATCATTTTTTTTAA+AGG | + | chr4.1:22494543-22494562 | MS.gene26597:intron | 10.0% |
| !!! | TCAAAATTTTAATATTGATT+TGG | + | chr4.1:22493933-22493952 | MS.gene26597:CDS | 10.0% |
| !!! | TTTAATTTTACTATGTATTT+AGG | - | chr4.1:22494696-22494715 | None:intergenic | 10.0% |
| !! | AACTTAATAAAGAAAACTTT+AGG | - | chr4.1:22494483-22494502 | None:intergenic | 15.0% |
| !!! | ATATTTATAGTACTTGATTT+TGG | + | chr4.1:22494855-22494874 | MS.gene26597:intron | 15.0% |
| !!! | TAGAAATTCACTTTTTTTTA+AGG | - | chr4.1:22494336-22494355 | None:intergenic | 15.0% |
| !! | AATAAATTCAACATACCAAA+AGG | + | chr4.1:22495040-22495059 | MS.gene26597:CDS | 20.0% |
| !! | AGCATAACTTAATAATCTTA+AGG | - | chr4.1:22494579-22494598 | None:intergenic | 20.0% |
| !! | ATAAATTCAACATACCAAAA+GGG | + | chr4.1:22495041-22495060 | MS.gene26597:CDS | 20.0% |
| !! | CTATTAAACAAAAGTAATGA+TGG | + | chr4.1:22495379-22495398 | MS.gene26597:CDS | 20.0% |
| !! | TATTAGTAAAAGTTGTAAGT+TGG | - | chr4.1:22493821-22493840 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAGATTTTTTT+TGG | - | chr4.1:22494814-22494833 | None:intergenic | 20.0% |
| !!! | CTTAACTTCAATATTTTCAA+AGG | + | chr4.1:22493588-22493607 | MS.gene26597:CDS | 20.0% |
| !!! | GTTATACTTTTTTTTGAAGA+AGG | - | chr4.1:22494644-22494663 | None:intergenic | 20.0% |
| !!! | GTTTTTTAACATTTGTAATG+TGG | + | chr4.1:22494886-22494905 | MS.gene26597:intron | 20.0% |
| !!! | TAATTGTCGTTATTCTAAAA+AGG | + | chr4.1:22493462-22493481 | MS.gene26597:intron | 20.0% |
| !!! | TACTATGTATTTAGGTTATA+GGG | - | chr4.1:22494688-22494707 | None:intergenic | 20.0% |
| !!! | TTAAACAATTTTAACAGCTA+AGG | + | chr4.1:22493846-22493865 | MS.gene26597:intron | 20.0% |
| !!! | TTACTATGTATTTAGGTTAT+AGG | - | chr4.1:22494689-22494708 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCCAAAGTATATT+TGG | + | chr4.1:22493486-22493505 | MS.gene26597:intron | 20.0% |
| ! | AAATTGAGCATAATAAGTGT+AGG | + | chr4.1:22493748-22493767 | MS.gene26597:intron | 25.0% |
| ! | AATTGAGCATAATAAGTGTA+GGG | + | chr4.1:22493749-22493768 | MS.gene26597:intron | 25.0% |
| ! | AGATTTATTGTAGTTTAGCT+AGG | - | chr4.1:22493793-22493812 | None:intergenic | 25.0% |
| ! | AGCAGAAAAAGTTTAGTTAA+AGG | - | chr4.1:22494757-22494776 | None:intergenic | 25.0% |
| ! | TAAACGTTCTAGTATATGTA+GGG | + | chr4.1:22494275-22494294 | MS.gene26597:intron | 25.0% |
| ! | TCCAAAGTATATTTGGAAAA+AGG | + | chr4.1:22493493-22493512 | MS.gene26597:intron | 25.0% |
| ! | TTAAACGTTCTAGTATATGT+AGG | + | chr4.1:22494274-22494293 | MS.gene26597:intron | 25.0% |
| ! | TTGTAATGTGGCATATATAA+AGG | + | chr4.1:22494898-22494917 | MS.gene26597:intron | 25.0% |
| !! | ACCTTTTTCCAAATATACTT+TGG | - | chr4.1:22493497-22493516 | None:intergenic | 25.0% |
| !! | ACTATGTATTTAGGTTATAG+GGG | - | chr4.1:22494687-22494706 | None:intergenic | 25.0% |
| !! | ATTTTTGTGTTATAGATCAC+CGG | + | chr4.1:22494085-22494104 | MS.gene26597:intron | 25.0% |
| !! | TACTTGAAGTATTATCTTAG+TGG | - | chr4.1:22494606-22494625 | None:intergenic | 25.0% |
| !! | TTAAACAAATTTGAGACCTA+TGG | + | chr4.1:22494711-22494730 | MS.gene26597:intron | 25.0% |
| !!! | TTTAACTAAACTTTTTCTGC+TGG | + | chr4.1:22494756-22494775 | MS.gene26597:intron | 25.0% |
| !!! | TTTTTTTGTTAAGTAGCACA+TGG | - | chr4.1:22494360-22494379 | None:intergenic | 25.0% |
| AAACGTTCTAGTATATGTAG+GGG | + | chr4.1:22494276-22494295 | MS.gene26597:intron | 30.0% | |
| AAATCTAAGTACTTGAAGAG+TGG | + | chr4.1:22495259-22495278 | MS.gene26597:CDS | 30.0% | |
| AATATCACATTCCTGAGAAT+TGG | + | chr4.1:22495413-22495432 | MS.gene26597:CDS | 30.0% | |
| AATCTAAGTACTTGAAGAGT+GGG | + | chr4.1:22495260-22495279 | MS.gene26597:CDS | 30.0% | |
| AATGTAGTAAGTACTTACGT+AGG | - | chr4.1:22493378-22493397 | None:intergenic | 30.0% | |
| ACTTGCAACTATAAGTTCTA+TGG | + | chr4.1:22495006-22495025 | MS.gene26597:CDS | 30.0% | |
| AGTATGGAAACAAATTGGAT+GGG | + | chr4.1:22493619-22493638 | MS.gene26597:CDS | 30.0% | |
| CGTAAGTACTTACTACATTA+TGG | + | chr4.1:22493379-22493398 | MS.gene26597:CDS | 30.0% | |
| CTAATACTATGTAGCATTAC+CGG | - | chr4.1:22494107-22494126 | None:intergenic | 30.0% | |
| GAAGGTAATGTTGAAAAGTA+TGG | + | chr4.1:22493664-22493683 | MS.gene26597:intron | 30.0% | |
| TATGCAAGAAGAAGACTATT+TGG | - | chr4.1:22495202-22495221 | None:intergenic | 30.0% | |
| TCTTCTTCTTGCATATTCAA+AGG | + | chr4.1:22495207-22495226 | MS.gene26597:CDS | 30.0% | |
| ! | CAATATTTTCAAAGGATGCT+TGG | + | chr4.1:22493596-22493615 | MS.gene26597:CDS | 30.0% |
| ! | TAAAGGAGGGTTTAATTTAG+AGG | + | chr4.1:22495339-22495358 | MS.gene26597:CDS | 30.0% |
| ! | TGATGGTTTCAACTTTGAAA+AGG | + | chr4.1:22493423-22493442 | MS.gene26597:CDS | 30.0% |
| AACATGGAGGTTTATTTGCA+TGG | + | chr4.1:22495295-22495314 | MS.gene26597:CDS | 35.0% | |
| AACGTTCTAGTATATGTAGG+GGG | + | chr4.1:22494277-22494296 | MS.gene26597:intron | 35.0% | |
| AACTTAGTGGCAAAAGTAAG+TGG | + | chr4.1:22493323-22493342 | MS.gene26597:CDS | 35.0% | |
| AAGTAAGTGGAAAGGTCTAT+TGG | + | chr4.1:22493336-22493355 | MS.gene26597:CDS | 35.0% | |
| AAGTTAGAATTTCCAACACG+AGG | - | chr4.1:22495112-22495131 | None:intergenic | 35.0% | |
| ATCTAAGTACTTGAAGAGTG+GGG | + | chr4.1:22495261-22495280 | MS.gene26597:CDS | 35.0% | |
| CCAAATGCAAATAATGTGAC+AGG | - | chr4.1:22495085-22495104 | None:intergenic | 35.0% | |
| CCTGTCACATTATTTGCATT+TGG | + | chr4.1:22495082-22495101 | MS.gene26597:CDS | 35.0% | |
| CGTGTTGGAAATTCTAACTT+TGG | + | chr4.1:22495112-22495131 | MS.gene26597:CDS | 35.0% | |
| CTTCTTGCATATTCAAAGGT+GGG | + | chr4.1:22495211-22495230 | MS.gene26597:CDS | 35.0% | |
| CTTGGAGTATGGAAACAAAT+TGG | + | chr4.1:22493614-22493633 | MS.gene26597:CDS | 35.0% | |
| GAAATTAGCATAACTGTCGT+TGG | + | chr4.1:22494965-22494984 | MS.gene26597:CDS | 35.0% | |
| GAGTATGGAAACAAATTGGA+TGG | + | chr4.1:22493618-22493637 | MS.gene26597:CDS | 35.0% | |
| GGATGTTGCATACAAATACT+TGG | - | chr4.1:22493542-22493561 | None:intergenic | 35.0% | |
| GTATGGAAACAAATTGGATG+GGG | + | chr4.1:22493620-22493639 | MS.gene26597:CDS | 35.0% | |
| GTTTATTTGCATGGAATTGC+AGG | + | chr4.1:22495304-22495323 | MS.gene26597:CDS | 35.0% | |
| TCTTCTTGCATATTCAAAGG+TGG | + | chr4.1:22495210-22495229 | MS.gene26597:CDS | 35.0% | |
| TGATTCTAGTGCTAGAAAAC+AGG | + | chr4.1:22494053-22494072 | MS.gene26597:CDS | 35.0% | |
| TGTAACTGCACATTCGATTT+AGG | - | chr4.1:22493982-22494001 | None:intergenic | 35.0% | |
| TTACGTAGGTCAATGTGTAA+AGG | - | chr4.1:22493364-22493383 | None:intergenic | 35.0% | |
| TTCAACAATCTGATGGTACT+TGG | + | chr4.1:22495461-22495480 | MS.gene26597:CDS | 35.0% | |
| TTCAACATTACCTTCATCAG+TGG | - | chr4.1:22493659-22493678 | None:intergenic | 35.0% | |
| TTGGTCACAGAATACTTGTA+AGG | - | chr4.1:22493523-22493542 | None:intergenic | 35.0% | |
| TTTGCTCAAGCTACATATGA+TGG | + | chr4.1:22493406-22493425 | MS.gene26597:CDS | 35.0% | |
| ! | GATTTAGGACCGAATATAAG+TGG | - | chr4.1:22493967-22493986 | None:intergenic | 35.0% |
| !! | TAACAGCTAAGGAAGCATTA+GGG | + | chr4.1:22493857-22493876 | MS.gene26597:intron | 35.0% |
| !! | TTAACAGCTAAGGAAGCATT+AGG | + | chr4.1:22493856-22493875 | MS.gene26597:intron | 35.0% |
| AAACGAGATTAGCAGACTTG+TGG | + | chr4.1:22494925-22494944 | MS.gene26597:CDS | 40.0% | |
| AGAACATGGAGAGAACTTAG+TGG | + | chr4.1:22493310-22493329 | MS.gene26597:CDS | 40.0% | |
| AGTGGCAAAAGTAAGTGGAA+AGG | + | chr4.1:22493328-22493347 | MS.gene26597:CDS | 40.0% | |
| AGTTAAAGGCCCAGTCATTA+AGG | - | chr4.1:22494743-22494762 | None:intergenic | 40.0% | |
| ATCACATTCCTGAGAATTGG+AGG | + | chr4.1:22495416-22495435 | MS.gene26597:CDS | 40.0% | |
| ATGGCACTTACCTTAATGAC+TGG | + | chr4.1:22494730-22494749 | MS.gene26597:intron | 40.0% | |
| CTAGCACTAGAATCAGCTAT+TGG | - | chr4.1:22494048-22494067 | None:intergenic | 40.0% | |
| GAACACAAGGAAGTAAAGGA+GGG | + | chr4.1:22495326-22495345 | MS.gene26597:CDS | 40.0% | |
| GATCCTGCACCACTTATATT+CGG | + | chr4.1:22493955-22493974 | MS.gene26597:CDS | 40.0% | |
| GGTATGGTTCAACAATCTGA+TGG | + | chr4.1:22495454-22495473 | MS.gene26597:CDS | 40.0% | |
| GTCATTAAGGTAAGTGCCAT+AGG | - | chr4.1:22494730-22494749 | None:intergenic | 40.0% | |
| TCACATTCCTGAGAATTGGA+GGG | + | chr4.1:22495417-22495436 | MS.gene26597:CDS | 40.0% | |
| TCGAATGTGCAGTTACACAA+TGG | + | chr4.1:22493985-22494004 | MS.gene26597:CDS | 40.0% | |
| TCTAGTATATGTAGGGGGTA+GGG | + | chr4.1:22494282-22494301 | MS.gene26597:intron | 40.0% | |
| TGATGGTACTTGGAAGCTAA+TGG | + | chr4.1:22495471-22495490 | MS.gene26597:CDS | 40.0% | |
| TGGCACTTACCTTAATGACT+GGG | + | chr4.1:22494731-22494750 | MS.gene26597:intron | 40.0% | |
| TTCAAAGGATGCTTGGAGTA+TGG | + | chr4.1:22493603-22493622 | MS.gene26597:CDS | 40.0% | |
| TTCTAGTATATGTAGGGGGT+AGG | + | chr4.1:22494281-22494300 | MS.gene26597:intron | 40.0% | |
| ! | ACATAGTTGTTGCTTGGAGA+GGG | + | chr4.1:22493887-22493906 | MS.gene26597:CDS | 40.0% |
| !! | GAAAAGGCATCTAAGTATGC+AGG | + | chr4.1:22493439-22493458 | MS.gene26597:CDS | 40.0% |
| CATGGAATTGCAGGAACACA+AGG | + | chr4.1:22495313-22495332 | MS.gene26597:CDS | 45.0% | |
| CTAGTATATGTAGGGGGTAG+GGG | + | chr4.1:22494283-22494302 | MS.gene26597:intron | 45.0% | |
| GAGGAATTAGAAATCGACGC+TGG | + | chr4.1:22495235-22495254 | MS.gene26597:CDS | 45.0% | |
| GCAGGAACACAAGGAAGTAA+AGG | + | chr4.1:22495322-22495341 | MS.gene26597:CDS | 45.0% | |
| GGAACACAAGGAAGTAAAGG+AGG | + | chr4.1:22495325-22495344 | MS.gene26597:CDS | 45.0% | |
| GGTTAGTGCACATAACATGG+AGG | + | chr4.1:22495282-22495301 | MS.gene26597:CDS | 45.0% | |
| TGCATATTCAAAGGTGGGAG+AGG | + | chr4.1:22495216-22495235 | MS.gene26597:CDS | 45.0% | |
| TGGGTAGCATAGCAAGAACA+TGG | + | chr4.1:22493296-22493315 | MS.gene26597:CDS | 45.0% | |
| ! | GACATAGTTGTTGCTTGGAG+AGG | + | chr4.1:22493886-22493905 | MS.gene26597:CDS | 45.0% |
| ! | TGGGGTTAGTGCACATAACA+TGG | + | chr4.1:22495279-22495298 | MS.gene26597:CDS | 45.0% |
| !! | GTGACAGGACATGCTTTTTG+AGG | - | chr4.1:22495070-22495089 | None:intergenic | 45.0% |
| !! | TAAGGAAGCATTAGGGAGGA+GGG | + | chr4.1:22493864-22493883 | MS.gene26597:CDS | 45.0% |
| !!! | GCTTTTTGAGGTTGCCCTTT+TGG | - | chr4.1:22495058-22495077 | None:intergenic | 45.0% |
| AACTGTCGTTGGACACAGCT+TGG | + | chr4.1:22494976-22494995 | MS.gene26597:CDS | 50.0% | |
| ACTGTCGTTGGACACAGCTT+GGG | + | chr4.1:22494977-22494996 | MS.gene26597:CDS | 50.0% | |
| CATTCCTGAGAATTGGAGGG+TGG | + | chr4.1:22495420-22495439 | MS.gene26597:CDS | 50.0% | |
| CGCTGCACTATCTCTTGCTT+TGG | - | chr4.1:22493563-22493582 | None:intergenic | 50.0% | |
| GACAATTCAGGGTGCAGAGT+GGG | + | chr4.1:22493909-22493928 | MS.gene26597:CDS | 50.0% | |
| GCTTGGAGAGGGACAATTCA+GGG | + | chr4.1:22493898-22493917 | MS.gene26597:CDS | 50.0% | |
| GGACCGAATATAAGTGGTGC+AGG | - | chr4.1:22493961-22493980 | None:intergenic | 50.0% | |
| GGAGGGACATAGTTGTTGCT+TGG | + | chr4.1:22493881-22493900 | MS.gene26597:CDS | 50.0% | |
| TGCTTGGAGAGGGACAATTC+AGG | + | chr4.1:22493897-22493916 | MS.gene26597:CDS | 50.0% | |
| ! | GCATTTGGTTCACCTCGTGT+TGG | + | chr4.1:22495097-22495116 | MS.gene26597:CDS | 50.0% |
| ! | GTTGCTGTTGCCACTGATGA+AGG | + | chr4.1:22493646-22493665 | MS.gene26597:CDS | 50.0% |
| !! | CAGCTAAGGAAGCATTAGGG+AGG | + | chr4.1:22493860-22493879 | MS.gene26597:intron | 50.0% |
| !! | CTAAGGAAGCATTAGGGAGG+AGG | + | chr4.1:22493863-22493882 | MS.gene26597:CDS | 50.0% |
| !! | GGTGGTGGAGAATAAGGGTA+TGG | + | chr4.1:22495438-22495457 | MS.gene26597:CDS | 50.0% |
| !! | TGGAGGGTGGTGGAGAATAA+GGG | + | chr4.1:22495433-22495452 | MS.gene26597:CDS | 50.0% |
| !! | TTGGAGGGTGGTGGAGAATA+AGG | + | chr4.1:22495432-22495451 | MS.gene26597:CDS | 50.0% |
| GGACAATTCAGGGTGCAGAG+TGG | + | chr4.1:22493908-22493927 | MS.gene26597:CDS | 55.0% | |
| TCCACCACCCTCCAATTCTC+AGG | - | chr4.1:22495427-22495446 | None:intergenic | 55.0% | |
| TCCTGAGAATTGGAGGGTGG+TGG | + | chr4.1:22495423-22495442 | MS.gene26597:CDS | 55.0% | |
| GTCGTTGGACACAGCTTGGG+TGG | + | chr4.1:22494980-22494999 | MS.gene26597:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 22493295 | 22495537 | 22493295 | ID=MS.gene26597 |
| chr4.1 | mRNA | 22493295 | 22495537 | 22493295 | ID=MS.gene26597.t1;Parent=MS.gene26597 |
| chr4.1 | exon | 22493295 | 22493460 | 22493295 | ID=MS.gene26597.t1.exon1;Parent=MS.gene26597.t1 |
| chr4.1 | CDS | 22493295 | 22493460 | 22493295 | ID=cds.MS.gene26597.t1;Parent=MS.gene26597.t1 |
| chr4.1 | exon | 22493500 | 22493667 | 22493500 | ID=MS.gene26597.t1.exon2;Parent=MS.gene26597.t1 |
| chr4.1 | CDS | 22493500 | 22493667 | 22493500 | ID=cds.MS.gene26597.t1;Parent=MS.gene26597.t1 |
| chr4.1 | exon | 22493863 | 22494074 | 22493863 | ID=MS.gene26597.t1.exon3;Parent=MS.gene26597.t1 |
| chr4.1 | CDS | 22493863 | 22494074 | 22493863 | ID=cds.MS.gene26597.t1;Parent=MS.gene26597.t1 |
| chr4.1 | exon | 22494920 | 22495537 | 22494920 | ID=MS.gene26597.t1.exon4;Parent=MS.gene26597.t1 |
| chr4.1 | CDS | 22494920 | 22495537 | 22494920 | ID=cds.MS.gene26597.t1;Parent=MS.gene26597.t1 |
| Gene Sequence |
| Protein sequence |
