AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059953


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059953.t1 MTR_4g104610 93.667 300 18 1 1 299 1 300 0.0 578
MS.gene059953.t1 MTR_4g104550 79.505 283 50 1 17 299 17 291 8.14e-164 465
MS.gene059953.t1 MTR_4g104540 74.790 238 51 2 63 299 1 230 3.12e-123 360
MS.gene059953.t1 MTR_4g089030 55.116 303 126 4 1 299 20 316 1.41e-116 346
MS.gene059953.t1 MTR_4g089020 53.333 300 123 6 8 299 2 292 2.49e-111 332
MS.gene059953.t1 MTR_0022s0290 53.268 306 132 3 1 299 14 315 2.58e-111 332
MS.gene059953.t1 MTR_4g089025 53.947 304 129 5 1 299 20 317 2.93e-111 332
MS.gene059953.t1 MTR_4g089055 51.316 304 134 6 1 299 20 314 1.70e-100 305
MS.gene059953.t1 MTR_3g076530 40.404 297 160 5 8 299 18 302 8.68e-76 241
MS.gene059953.t1 MTR_4g104640 41.115 287 159 3 17 298 34 315 1.73e-66 217
MS.gene059953.t1 MTR_3g076560 38.538 301 170 4 2 299 26 314 6.17e-64 210
MS.gene059953.t1 MTR_4g104660 39.189 296 170 4 7 298 22 311 7.99e-63 207
MS.gene059953.t1 MTR_5g470730 39.735 302 159 8 8 299 14 302 2.88e-61 201
MS.gene059953.t1 MTR_8g091690 36.877 301 176 5 1 299 1 289 2.92e-61 202
MS.gene059953.t1 MTR_5g070710 39.203 301 160 8 8 299 13 299 8.39e-61 202
MS.gene059953.t1 MTR_5g018980 39.024 287 167 4 17 299 23 305 1.29e-60 201
MS.gene059953.t1 MTR_2g065360 35.842 279 168 3 23 299 2 271 7.17e-60 198
MS.gene059953.t1 MTR_5g070850 38.333 300 166 6 8 299 14 302 1.93e-59 198
MS.gene059953.t1 MTR_3g058000 39.130 276 157 5 27 299 37 304 1.70e-58 196
MS.gene059953.t1 MTR_3g057860 37.333 300 177 6 3 298 8 300 2.39e-58 195
MS.gene059953.t1 MTR_5g073250 39.933 298 158 7 9 299 16 299 3.39e-58 195
MS.gene059953.t1 MTR_3g057800 36.765 272 163 3 28 299 36 298 3.58e-58 195
MS.gene059953.t1 MTR_5g094570 39.493 276 150 6 8 280 18 279 4.19e-58 194
MS.gene059953.t1 MTR_5g094540 41.155 277 146 6 8 281 18 280 2.60e-57 192
MS.gene059953.t1 MTR_3g057910 36.765 272 165 3 28 299 38 302 3.69e-57 192
MS.gene059953.t1 MTR_5g094550 41.071 280 142 8 8 281 18 280 3.87e-57 192
MS.gene059953.t1 MTR_5g094560 39.068 279 149 7 8 281 18 280 1.12e-56 191
MS.gene059953.t1 MTR_5g018990 38.206 301 176 5 2 298 8 302 2.57e-56 190
MS.gene059953.t1 MTR_5g070920 38.333 300 165 5 8 299 14 301 2.84e-56 190
MS.gene059953.t1 MTR_3g058240 37.591 274 161 5 28 299 1 266 3.91e-56 189
MS.gene059953.t1 MTR_3g058250 37.857 280 164 5 22 299 29 300 5.26e-56 189
MS.gene059953.t1 MTR_5g070690 37.417 302 166 7 8 299 12 300 9.81e-56 188
MS.gene059953.t1 MTR_5g070800 37.417 302 166 7 8 299 12 300 9.81e-56 188
MS.gene059953.t1 MTR_4g133750 36.513 304 173 5 2 298 7 297 1.20e-55 188
MS.gene059953.t1 MTR_4g026070 32.770 296 188 4 8 300 9 296 1.36e-55 183
MS.gene059953.t1 MTR_5g094520 40.146 274 149 4 10 281 51 311 3.06e-55 187
MS.gene059953.t1 MTR_5g019010 35.570 298 176 7 9 298 12 301 3.21e-55 187
MS.gene059953.t1 MTR_1g035190 37.891 256 145 5 28 280 20 264 2.26e-54 184
MS.gene059953.t1 MTR_4g048580 38.182 275 155 4 9 281 19 280 6.71e-54 183
MS.gene059953.t1 MTR_1g023730 34.021 291 175 3 21 299 25 310 8.97e-54 183
MS.gene059953.t1 MTR_5g073320 38.112 286 159 6 18 299 29 300 9.87e-54 183
MS.gene059953.t1 MTR_3g057970 37.011 281 161 6 2 277 5 274 1.46e-53 182
MS.gene059953.t1 MTR_1g023720 33.333 291 177 3 21 299 25 310 1.72e-53 182
MS.gene059953.t1 MTR_3g058390 35.473 296 178 6 9 299 13 300 2.79e-53 182
MS.gene059953.t1 MTR_6g039630 37.143 245 146 5 26 268 32 270 2.98e-53 176
MS.gene059953.t1 MTR_4g026050 33.784 296 183 5 8 298 7 294 3.48e-53 181
MS.gene059953.t1 MTR_6g084770 33.876 307 180 7 5 299 8 303 3.78e-53 182
MS.gene059953.t1 MTR_7g012330 34.084 311 188 7 11 312 15 317 4.79e-53 181
MS.gene059953.t1 MTR_8g466180 34.657 277 172 5 25 299 31 300 6.07e-53 181
MS.gene059953.t1 MTR_3g057980 36.525 282 167 6 2 277 5 280 7.70e-53 181
MS.gene059953.t1 MTR_1g035140 37.063 286 154 7 23 299 32 300 8.61e-53 181
MS.gene059953.t1 MTR_3g057900 37.102 283 162 6 3 277 6 280 9.38e-53 180
MS.gene059953.t1 MTR_5g070700 37.874 301 166 7 8 299 14 302 1.00e-52 181
MS.gene059953.t1 MTR_1g023700 33.904 292 174 4 21 299 26 311 2.25e-52 180
MS.gene059953.t1 MTR_8g020940 33.935 277 167 4 27 297 35 301 2.49e-52 179
MS.gene059953.t1 MTR_3g058060 37.319 276 161 6 27 299 37 303 2.74e-52 181
MS.gene059953.t1 MTR_5g094660 37.226 274 157 4 27 298 37 297 3.25e-52 179
MS.gene059953.t1 MTR_8g020950 35.018 277 164 4 27 297 37 303 4.09e-52 179
MS.gene059953.t1 MTR_3g058110 34.643 280 174 5 22 299 32 304 4.87e-52 179
MS.gene059953.t1 MTR_4g025950 34.532 278 166 6 29 300 30 297 1.38e-51 172
MS.gene059953.t1 MTR_6g462640 33.670 297 189 4 4 299 11 300 2.81e-51 177
MS.gene059953.t1 MTR_3g058220 34.875 281 174 4 20 299 28 300 5.23e-51 176
MS.gene059953.t1 MTR_3g058210 36.691 278 164 5 25 299 34 302 6.96e-51 176
MS.gene059953.t1 MTR_5g045770 34.420 276 166 6 29 299 30 295 9.15e-51 175
MS.gene059953.t1 MTR_6g034965 36.093 302 173 7 2 298 8 294 1.38e-50 175
MS.gene059953.t1 MTR_7g012860 35.211 284 170 4 23 299 24 300 2.18e-50 174
MS.gene059953.t1 MTR_0287s0060 35.211 284 170 4 23 299 24 300 2.18e-50 174
MS.gene059953.t1 MTR_6g035100 37.086 302 171 6 2 298 7 294 3.28e-50 174
MS.gene059953.t1 MTR_4g025970 34.657 277 165 6 29 299 30 296 1.60e-49 172
MS.gene059953.t1 MTR_0059s0170 35.526 304 180 7 2 299 8 301 2.64e-49 171
MS.gene059953.t1 MTR_3g076550 37.681 276 131 5 26 299 67 303 2.73e-49 171
MS.gene059953.t1 MTR_7g087520 33.808 281 175 4 24 298 33 308 3.09e-48 169
MS.gene059953.t1 MTR_0554s0020 37.768 233 140 3 25 256 34 262 3.81e-48 168
MS.gene059953.t1 MTR_4g025980 32.558 258 169 4 13 265 13 270 5.15e-48 168
MS.gene059953.t1 MTR_5g094840 33.577 274 168 5 28 299 44 305 6.22e-48 168
MS.gene059953.t1 MTR_5g070980 41.935 217 119 3 8 220 14 227 7.44e-48 160
MS.gene059953.t1 MTR_3g058400 33.562 292 183 5 10 299 19 301 8.67e-48 167
MS.gene059953.t1 MTR_3g077460 36.630 273 125 5 30 299 9 236 1.13e-47 164
MS.gene059953.t1 MTR_5g023680 33.574 277 169 4 28 299 5 271 1.22e-47 166
MS.gene059953.t1 MTR_4g026200 32.526 289 182 5 18 302 19 298 3.08e-47 166
MS.gene059953.t1 MTR_8g104080 37.209 258 146 5 1 253 8 254 5.57e-47 160
MS.gene059953.t1 MTR_8g020960 32.323 297 185 4 7 297 16 302 8.62e-47 165
MS.gene059953.t1 MTR_3g436390 32.014 278 174 5 25 299 33 298 8.64e-46 162
MS.gene059953.t1 MTR_1g442730 34.155 284 164 7 7 281 10 279 1.05e-45 162
MS.gene059953.t1 MTR_0171s0020 32.069 290 187 5 16 299 21 306 3.73e-44 158
MS.gene059953.t1 MTR_5g018480 31.650 297 181 8 21 304 33 320 4.51e-44 153
MS.gene059953.t1 MTR_5g072980 36.441 236 138 4 28 255 33 264 6.56e-44 157
MS.gene059953.t1 MTR_5g072930 36.441 236 138 4 28 255 33 264 6.56e-44 157
MS.gene059953.t1 MTR_3g436540 30.847 295 192 4 8 299 20 305 7.36e-44 157
MS.gene059953.t1 MTR_5g073230 34.173 278 152 7 10 285 24 272 3.89e-43 154
MS.gene059953.t1 MTR_5g095260 34.052 232 146 4 25 254 38 264 5.46e-43 154
MS.gene059953.t1 MTR_3g020780 30.464 302 202 4 1 299 11 307 2.32e-42 153
MS.gene059953.t1 MTR_8g076290 32.031 256 162 5 29 284 36 279 7.97e-42 151
MS.gene059953.t1 MTR_4g109470 33.632 223 136 3 37 250 40 259 1.24e-41 151
MS.gene059953.t1 MTR_4g071710 32.530 249 162 5 29 277 38 280 3.37e-41 150
MS.gene059953.t1 MTR_5g095290 32.627 236 152 4 21 254 34 264 6.01e-41 149
MS.gene059953.t1 MTR_5g073020 35.743 249 146 5 28 266 33 277 6.49e-41 149
MS.gene059953.t1 MTR_5g094535 40.639 219 104 4 10 223 20 217 8.16e-41 142
MS.gene059953.t1 MTR_3g025260 33.032 221 140 2 37 250 41 260 1.11e-40 148
MS.gene059953.t1 MTR_3g025230 33.184 223 141 2 37 252 41 262 1.57e-40 148
MS.gene059953.t1 MTR_2g450040 31.111 315 189 10 3 300 11 314 1.57e-40 148
MS.gene059953.t1 MTR_3g024520 33.184 223 141 2 37 252 41 262 1.68e-40 148
MS.gene059953.t1 MTR_6g008500 31.385 325 183 10 2 296 15 329 2.08e-40 148
MS.gene059953.t1 MTR_4g062500 30.292 274 187 3 29 299 36 308 6.44e-40 146
MS.gene059953.t1 MTR_0181s0030 30.389 283 180 4 23 299 29 300 7.40e-40 146
MS.gene059953.t1 MTR_4g088400 30.556 288 176 6 25 300 43 318 7.74e-40 146
MS.gene059953.t1 MTR_6g035115 31.760 233 154 3 25 256 34 262 1.61e-39 145
MS.gene059953.t1 MTR_7g092620 29.740 269 176 5 1 262 12 274 1.92e-39 145
MS.gene059953.t1 MTR_2g010530 33.476 233 150 3 25 256 31 259 2.55e-39 144
MS.gene059953.t1 MTR_0638s0020 30.466 279 140 5 23 299 2 228 7.07e-39 142
MS.gene059953.t1 MTR_5g021390 31.034 261 167 5 24 284 40 287 1.09e-38 143
MS.gene059953.t1 MTR_4g088425 33.333 258 155 7 24 277 35 279 1.26e-37 140
MS.gene059953.t1 MTR_7g027960 30.000 280 184 6 23 299 26 296 2.27e-37 139
MS.gene059953.t1 MTR_5g094520 37.443 219 124 3 63 281 1 206 2.29e-37 138
MS.gene059953.t1 MTR_7g028020 30.000 280 184 6 23 299 26 296 2.72e-37 139
MS.gene059953.t1 MTR_5g016410 31.008 258 168 3 2 250 6 262 3.93e-37 139
MS.gene059953.t1 MTR_3g058230 32.489 237 150 3 63 299 1 227 7.91e-37 136
MS.gene059953.t1 MTR_4g088415 29.010 293 186 5 29 309 45 327 1.58e-36 135
MS.gene059953.t1 MTR_7g092600 30.970 268 168 5 37 299 48 303 1.65e-36 137
MS.gene059953.t1 MTR_7g056103 30.392 306 191 8 1 299 12 302 3.48e-36 136
MS.gene059953.t1 MTR_5g016440 30.830 253 168 4 1 249 6 255 3.89e-36 135
MS.gene059953.t1 MTR_0171s0010 28.920 287 190 7 23 299 26 308 7.19e-36 135
MS.gene059953.t1 MTR_4g095050 30.476 315 188 7 1 302 8 304 6.83e-35 132
MS.gene059953.t1 MTR_8g469300 27.170 265 183 3 39 299 46 304 2.19e-34 131
MS.gene059953.t1 MTR_5g073240 49.242 132 65 1 8 137 62 193 2.82e-34 124
MS.gene059953.t1 MTR_8g012590 30.420 286 168 6 22 296 30 295 3.96e-34 130
MS.gene059953.t1 MTR_4g102310 28.169 284 194 3 18 299 29 304 1.85e-33 129
MS.gene059953.t1 MTR_8g468780 30.290 241 158 3 63 299 1 235 2.62e-33 127
MS.gene059953.t1 MTR_3g014880 30.435 322 194 9 4 300 8 324 3.22e-33 128
MS.gene059953.t1 MTR_5g095220 29.644 253 154 5 25 272 25 258 4.24e-33 127
MS.gene059953.t1 MTR_1g107305 27.985 268 187 4 39 301 49 315 5.71e-33 125
MS.gene059953.t1 MTR_1g031700 30.033 303 194 9 1 299 8 296 7.92e-33 127
MS.gene059953.t1 MTR_7g075610 28.090 267 184 3 6 268 15 277 8.40e-33 127
MS.gene059953.t1 MTR_4g062530 28.302 265 175 5 37 299 44 295 1.20e-32 125
MS.gene059953.t1 MTR_6g022450 29.642 307 191 6 4 296 11 306 1.39e-32 126
MS.gene059953.t1 MTR_4g094772 30.894 246 164 4 16 259 21 262 2.36e-32 125
MS.gene059953.t1 MTR_7g103450 30.282 284 183 4 7 284 25 299 2.42e-32 125
MS.gene059953.t1 MTR_8g012585 31.907 257 156 6 55 300 1 249 3.45e-32 124
MS.gene059953.t1 MTR_2g437840 30.566 265 172 5 2 255 4 267 4.69e-32 124
MS.gene059953.t1 MTR_4g062510 27.444 266 187 4 39 299 48 312 5.57e-32 125
MS.gene059953.t1 MTR_1g097240 30.928 291 166 9 1 277 5 274 1.00e-31 124
MS.gene059953.t1 MTR_6g008530 29.193 322 196 9 1 300 16 327 1.05e-31 124
MS.gene059953.t1 MTR_5g094670 33.937 221 99 6 8 226 19 194 1.69e-31 119
MS.gene059953.t1 MTR_1g107295 27.820 266 186 4 39 299 49 313 2.60e-31 123
MS.gene059953.t1 MTR_6g008600 30.218 321 191 10 2 300 16 325 1.08e-30 121
MS.gene059953.t1 MTR_8g036185 30.515 272 172 6 38 299 44 308 1.36e-30 120
MS.gene059953.t1 MTR_4g094775 27.273 308 198 7 3 300 7 298 1.38e-30 120
MS.gene059953.t1 MTR_6g008620 29.524 315 198 9 3 300 16 323 1.68e-30 120
MS.gene059953.t1 MTR_3g058380 29.825 228 152 3 72 299 1 220 2.10e-30 119
MS.gene059953.t1 MTR_4g035330 30.932 236 157 4 16 249 18 249 7.03e-30 118
MS.gene059953.t1 MTR_6g042610 27.937 315 203 8 4 302 12 318 1.79e-29 117
MS.gene059953.t1 MTR_6g008640 28.814 295 186 7 23 300 34 321 3.25e-29 117
MS.gene059953.t1 MTR_6g008650 27.950 322 201 8 3 299 7 322 5.69e-29 116
MS.gene059953.t1 MTR_1g103670 28.309 272 182 6 28 297 34 294 1.16e-28 115
MS.gene059953.t1 MTR_4g018800 29.338 317 196 11 3 300 16 323 1.51e-28 115
MS.gene059953.t1 MTR_2g437880 31.950 241 151 4 22 250 26 265 1.80e-28 114
MS.gene059953.t1 MTR_6g042540 28.616 318 196 9 4 302 12 317 7.26e-28 113
MS.gene059953.t1 MTR_8g091680 27.243 301 166 5 1 299 1 250 7.97e-28 112
MS.gene059953.t1 MTR_6g008430 29.252 294 181 9 23 300 34 316 1.60e-27 112
MS.gene059953.t1 MTR_5g094460 33.173 208 104 4 22 226 23 198 3.29e-27 109
MS.gene059953.t1 MTR_4g102280 28.669 293 192 5 15 299 27 310 5.24e-27 110
MS.gene059953.t1 MTR_1g103680 27.152 302 202 9 1 297 7 295 1.38e-26 109
MS.gene059953.t1 MTR_4g471620 37.086 151 92 2 29 179 38 185 2.48e-26 103
MS.gene059953.t1 MTR_4g088160 26.259 278 188 7 27 299 34 299 3.63e-26 108
MS.gene059953.t1 MTR_4g077210 30.070 286 180 7 23 300 30 303 4.36e-26 108
MS.gene059953.t1 MTR_7g075580 27.106 273 193 3 1 268 6 277 5.97e-26 107
MS.gene059953.t1 MTR_7g075390 23.077 273 204 3 1 268 6 277 7.05e-26 107
MS.gene059953.t1 MTR_4g088195 26.259 278 188 7 27 299 34 299 1.07e-25 107
MS.gene059953.t1 MTR_0608s0010 26.733 303 190 8 1 299 8 282 1.55e-25 105
MS.gene059953.t1 MTR_4g088170 25.899 278 189 7 27 299 34 299 3.02e-25 105
MS.gene059953.t1 MTR_7g075540 26.068 234 166 3 39 268 45 275 3.10e-25 105
MS.gene059953.t1 MTR_5g070685 47.321 112 50 3 3 106 6 116 2.19e-24 95.9
MS.gene059953.t1 MTR_8g046210 26.645 304 206 7 3 299 12 305 4.40e-24 102
MS.gene059953.t1 MTR_8g046240 25.483 259 184 3 8 258 15 272 2.48e-23 100
MS.gene059953.t1 MTR_5g007450 26.484 219 156 1 1 219 15 228 2.55e-23 100
MS.gene059953.t1 MTR_5g007550 27.397 219 151 3 1 219 18 228 3.09e-23 100
MS.gene059953.t1 MTR_7g075600 24.681 235 170 3 39 268 45 277 7.92e-23 99.0
MS.gene059953.t1 MTR_5g045250 30.364 247 153 11 45 285 75 308 8.85e-23 98.6
MS.gene059953.t1 MTR_4g078110 29.412 238 141 6 20 251 21 237 1.05e-22 98.2
MS.gene059953.t1 MTR_1g097220 29.371 286 167 11 16 285 48 314 1.78e-22 97.8
MS.gene059953.t1 MTR_3g057990 27.490 251 127 5 7 256 10 206 2.71e-22 93.2
MS.gene059953.t1 MTR_4g133760 29.167 240 120 7 63 298 1 194 1.43e-21 94.4
MS.gene059953.t1 MTR_2g073420 24.252 301 214 6 1 299 19 307 1.63e-20 92.0
MS.gene059953.t1 MTR_0171s0030 26.577 222 155 4 81 299 2 218 1.65e-20 91.7
MS.gene059953.t1 MTR_5g007460 28.431 204 140 4 21 219 3 205 3.36e-20 90.9
MS.gene059953.t1 MTR_5g070830 31.373 204 124 5 101 299 220 412 4.57e-20 90.9
MS.gene059953.t1 MTR_1g037370 31.122 196 129 3 28 219 31 224 1.21e-19 89.4
MS.gene059953.t1 MTR_1g116890 26.119 268 163 8 27 277 33 282 1.94e-19 89.0
MS.gene059953.t1 MTR_0155s0010 34.328 134 88 0 12 145 1 134 2.80e-19 83.2
MS.gene059953.t1 MTR_3g465300 22.837 289 201 6 3 277 20 300 6.28e-18 84.3
MS.gene059953.t1 MTR_8g080520 28.763 299 177 11 2 286 42 318 1.17e-17 83.6
MS.gene059953.t1 MTR_5g075450 27.074 229 158 5 28 249 33 259 3.73e-17 82.0
MS.gene059953.t1 MTR_2g073440 31.250 144 97 1 1 144 8 149 4.71e-17 81.6
MS.gene059953.t1 MTR_3g467220 23.853 327 205 11 1 299 9 319 5.37e-17 81.6
MS.gene059953.t1 MTR_6g084910 30.172 116 79 1 104 219 1 114 6.50e-17 75.9
MS.gene059953.t1 MTR_3g467290 23.826 298 200 7 1 280 23 311 7.41e-17 81.3
MS.gene059953.t1 MTR_4g026030 29.801 151 96 3 151 299 1 143 1.76e-16 79.3
MS.gene059953.t1 MTR_1g055325 23.322 283 197 6 27 291 53 333 3.45e-16 79.3
MS.gene059953.t1 MTR_8g073950 25.085 295 194 8 8 284 18 303 3.52e-16 79.3
MS.gene059953.t1 MTR_4g131830 24.609 256 181 6 17 267 22 270 3.55e-16 79.3
MS.gene059953.t1 MTR_1g111240 27.749 191 129 5 37 219 74 263 4.50e-16 79.0
MS.gene059953.t1 MTR_5g026520 24.068 295 205 9 2 284 5 292 6.94e-16 78.2
MS.gene059953.t1 MTR_8g073960 25.564 266 173 7 28 277 44 300 1.11e-15 77.8
MS.gene059953.t1 MTR_3g057880 43.210 81 41 2 9 85 39 118 3.95e-15 71.2
MS.gene059953.t1 MTR_8g076390 24.573 293 195 8 35 311 51 333 4.26e-15 75.9
MS.gene059953.t1 MTR_3g467200 23.552 259 172 6 37 280 59 306 1.97e-14 73.9
MS.gene059953.t1 MTR_8g027040 25.000 264 173 11 30 285 86 332 4.63e-14 72.8
MS.gene059953.t1 MTR_8g076372 24.812 266 175 7 35 284 51 307 8.67e-14 72.0
MS.gene059953.t1 MTR_1g091023 23.588 301 215 6 1 299 8 295 6.93e-13 69.3
MS.gene059953.t1 MTR_1g091003 23.841 302 210 7 6 299 6 295 2.18e-12 67.8
MS.gene059953.t1 MTR_5g056720 23.039 204 137 3 51 254 20 203 2.60e-12 67.4
MS.gene059953.t1 MTR_2g105360 26.906 223 136 9 25 226 30 246 6.46e-12 66.2
MS.gene059953.t1 MTR_1g091010 23.102 303 213 8 1 299 8 294 1.34e-11 65.5
MS.gene059953.t1 MTR_3g058150 48.214 56 29 0 63 118 1 56 1.69e-11 59.3
MS.gene059953.t1 MTR_6g084760 28.696 115 69 2 104 218 1 102 2.24e-11 60.1
MS.gene059953.t1 MTR_6g022460 39.506 81 45 2 22 98 30 110 2.67e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059953.t1 AT3G48270 52.899 276 114 3 24 299 27 286 1.17e-96 294
MS.gene059953.t1 AT3G48320 50.836 299 129 4 2 299 6 287 1.02e-95 291
MS.gene059953.t1 AT3G48280 50.836 299 131 5 1 299 4 286 6.92e-95 290
MS.gene059953.t1 AT3G48310 52.708 277 113 4 24 299 28 287 4.10e-93 285
MS.gene059953.t1 AT3G48300 53.333 270 110 4 30 299 31 284 7.02e-93 284
MS.gene059953.t1 AT3G48300 53.333 270 110 4 30 299 33 286 7.43e-93 284
MS.gene059953.t1 AT3G48290 48.772 285 130 3 24 308 29 297 4.92e-91 280
MS.gene059953.t1 AT3G48290 50.000 276 122 3 24 299 29 288 2.00e-90 278
MS.gene059953.t1 AT2G30770 45.620 274 136 2 27 299 32 293 1.37e-80 253
MS.gene059953.t1 AT4G13310 44.482 299 149 5 21 313 25 312 1.74e-80 249
MS.gene059953.t1 AT1G11610 44.444 279 142 2 22 299 27 293 1.36e-79 250
MS.gene059953.t1 AT1G11610 44.444 279 142 2 22 299 27 293 1.73e-79 250
MS.gene059953.t1 AT4G13310 44.482 299 149 5 21 313 25 312 6.11e-79 249
MS.gene059953.t1 AT5G24960 46.853 286 138 4 17 299 20 294 2.36e-78 244
MS.gene059953.t1 AT5G24950 44.128 281 144 3 21 299 24 293 1.65e-77 245
MS.gene059953.t1 AT5G24960 46.853 286 138 4 17 299 20 294 8.11e-77 243
MS.gene059953.t1 AT2G30750 45.965 285 140 4 17 299 21 293 2.69e-75 239
MS.gene059953.t1 AT4G13290 45.113 266 132 3 22 284 27 281 8.07e-74 235
MS.gene059953.t1 AT5G42590 41.914 303 161 5 1 299 3 294 1.23e-69 224
MS.gene059953.t1 AT4G20240 42.282 298 152 6 14 310 21 299 5.56e-69 220
MS.gene059953.t1 AT4G20240 42.282 298 152 6 14 310 21 299 4.79e-68 219
MS.gene059953.t1 AT5G25140 34.680 297 177 6 8 299 8 292 2.10e-52 179
MS.gene059953.t1 AT1G13080 39.781 274 143 5 1 264 12 273 2.14e-52 179
MS.gene059953.t1 AT5G25120 33.670 297 180 7 8 299 8 292 3.94e-52 179
MS.gene059953.t1 AT3G26330 34.420 276 165 5 29 299 32 296 1.86e-51 177
MS.gene059953.t1 AT3G26310 32.727 275 169 4 30 299 32 295 2.52e-51 177
MS.gene059953.t1 AT5G57260 32.852 277 169 7 29 299 31 296 5.49e-51 176
MS.gene059953.t1 AT3G26170 35.361 263 162 4 8 262 8 270 1.45e-50 175
MS.gene059953.t1 AT1G13110 34.495 287 174 4 2 284 7 283 4.60e-50 173
MS.gene059953.t1 AT3G26320 33.692 279 163 7 29 299 32 296 5.73e-50 173
MS.gene059953.t1 AT5G25130 35.965 228 144 2 26 251 27 254 5.74e-50 173
MS.gene059953.t1 AT3G26180 37.190 242 146 3 27 262 29 270 1.57e-49 172
MS.gene059953.t1 AT3G26300 30.986 284 180 4 21 299 24 296 2.55e-49 171
MS.gene059953.t1 AT2G24180 33.333 279 171 5 26 299 34 302 3.38e-49 171
MS.gene059953.t1 AT3G26290 35.145 276 161 6 30 299 33 296 8.90e-49 170
MS.gene059953.t1 AT3G26290 35.145 276 161 6 30 299 46 309 9.43e-49 170
MS.gene059953.t1 AT4G13770 35.000 280 170 4 23 299 25 295 3.84e-48 168
MS.gene059953.t1 AT5G07990 29.967 307 192 6 1 299 6 297 1.21e-47 167
MS.gene059953.t1 AT3G53280 33.992 253 154 3 28 277 28 270 5.46e-47 165
MS.gene059953.t1 AT4G31500 33.218 289 175 5 18 299 17 294 9.74e-47 164
MS.gene059953.t1 AT5G25180 30.897 301 191 6 3 299 5 292 1.23e-46 164
MS.gene059953.t1 AT3G44250 33.984 256 151 5 28 277 28 271 7.21e-46 162
MS.gene059953.t1 AT3G26190 34.733 262 156 4 28 284 28 279 1.03e-45 162
MS.gene059953.t1 AT3G26160 34.194 310 178 7 3 298 1 298 3.69e-45 160
MS.gene059953.t1 AT2G02580 34.853 307 172 10 2 299 9 296 4.94e-44 157
MS.gene059953.t1 AT3G26280 35.659 258 149 5 26 277 30 276 5.95e-44 157
MS.gene059953.t1 AT3G26280 35.659 258 149 5 26 277 47 293 6.06e-44 157
MS.gene059953.t1 AT4G20235 36.090 266 130 5 9 265 14 248 7.41e-44 153
MS.gene059953.t1 AT1G13090 34.583 240 146 3 28 259 28 264 1.31e-43 151
MS.gene059953.t1 AT1G13090 34.583 240 146 3 28 259 28 264 7.73e-42 151
MS.gene059953.t1 AT3G26150 33.684 285 169 5 3 277 1 275 8.78e-42 151
MS.gene059953.t1 AT3G26270 35.271 258 150 5 26 277 30 276 1.17e-40 148
MS.gene059953.t1 AT3G26200 32.963 270 165 5 20 284 21 279 2.05e-40 147
MS.gene059953.t1 AT3G26220 32.609 322 189 10 3 313 12 316 2.08e-40 147
MS.gene059953.t1 AT1G01280 34.375 288 171 6 1 277 1 281 8.96e-40 146
MS.gene059953.t1 AT5G06900 31.769 277 173 4 28 299 34 299 1.02e-39 145
MS.gene059953.t1 AT3G26230 35.689 283 169 7 9 286 7 281 1.45e-39 145
MS.gene059953.t1 AT3G26210 35.321 218 138 2 37 251 40 257 3.22e-39 144
MS.gene059953.t1 AT4G36220 32.287 223 144 5 35 256 47 263 5.63e-39 144
MS.gene059953.t1 AT5G04330 32.443 262 164 6 26 283 30 282 7.98e-39 143
MS.gene059953.t1 AT5G67310 30.717 293 186 7 13 300 27 307 1.99e-38 142
MS.gene059953.t1 AT3G26830 33.463 257 164 4 9 258 7 263 3.71e-38 141
MS.gene059953.t1 AT1G13100 33.051 236 144 3 38 265 38 267 8.72e-37 137
MS.gene059953.t1 AT2G45560 31.698 265 165 6 28 284 38 294 9.43e-36 131
MS.gene059953.t1 AT4G31970 31.203 266 159 5 29 277 33 291 1.59e-35 134
MS.gene059953.t1 AT2G42250 29.836 305 199 5 1 299 10 305 4.75e-35 133
MS.gene059953.t1 AT2G45560 31.698 265 165 6 28 284 38 294 2.30e-34 131
MS.gene059953.t1 AT2G45560 34.500 200 126 3 28 222 38 237 2.37e-34 125
MS.gene059953.t1 AT4G12300 30.033 303 192 7 2 298 20 308 5.21e-33 127
MS.gene059953.t1 AT3G53300 33.188 229 148 4 26 249 26 254 1.19e-32 126
MS.gene059953.t1 AT4G22710 28.731 268 176 5 37 299 62 319 1.90e-32 126
MS.gene059953.t1 AT2G45550 28.479 309 197 9 1 299 12 306 4.78e-32 125
MS.gene059953.t1 AT4G37430 28.814 295 179 8 8 277 2 290 6.49e-32 124
MS.gene059953.t1 AT4G31940 29.213 267 164 5 29 277 33 292 7.20e-32 124
MS.gene059953.t1 AT4G37310 33.333 264 157 10 1 250 4 262 8.43e-32 124
MS.gene059953.t1 AT4G22690 28.358 268 177 5 37 299 93 350 9.39e-32 124
MS.gene059953.t1 AT2G40890 27.723 303 184 9 28 306 27 318 2.73e-31 122
MS.gene059953.t1 AT5G57220 32.700 263 161 8 10 262 10 266 4.12e-31 122
MS.gene059953.t1 AT4G37320 30.154 325 185 14 2 307 6 307 9.68e-31 121
MS.gene059953.t1 AT4G37330 32.707 266 165 7 2 258 6 266 1.08e-30 120
MS.gene059953.t1 AT3G20940 28.114 281 190 4 22 299 36 307 3.87e-30 119
MS.gene059953.t1 AT3G20090 29.057 265 174 4 39 299 54 308 1.00e-29 118
MS.gene059953.t1 AT1G50520 27.985 268 178 4 37 299 52 309 2.10e-29 117
MS.gene059953.t1 AT2G23190 29.655 290 186 9 2 277 49 334 2.99e-29 117
MS.gene059953.t1 AT5G36220 28.025 314 195 9 3 302 8 304 3.66e-29 117
MS.gene059953.t1 AT2G25160 30.650 323 183 13 1 299 5 310 8.67e-29 115
MS.gene059953.t1 AT3G20110 28.053 303 199 5 6 299 11 303 9.14e-29 115
MS.gene059953.t1 AT4G12320 28.289 304 200 6 2 299 20 311 1.04e-28 115
MS.gene059953.t1 AT4G15360 28.904 301 196 6 8 299 15 306 1.67e-28 115
MS.gene059953.t1 AT4G37340 30.182 275 158 9 24 283 26 281 1.92e-28 114
MS.gene059953.t1 AT2G25160 30.650 323 183 13 1 299 5 310 2.89e-28 114
MS.gene059953.t1 AT1G33720 27.899 276 186 6 29 299 39 306 3.05e-28 114
MS.gene059953.t1 AT2G45570 28.916 249 161 5 37 277 47 287 4.41e-28 114
MS.gene059953.t1 AT4G37400 29.297 256 153 7 37 283 40 276 3.56e-27 111
MS.gene059953.t1 AT3G20140 28.261 276 185 3 27 299 41 306 6.32e-27 110
MS.gene059953.t1 AT1G50560 26.592 267 180 4 39 299 54 310 6.99e-27 110
MS.gene059953.t1 AT3G20950 27.869 305 197 6 8 299 16 310 8.73e-27 110
MS.gene059953.t1 AT4G37370 30.075 266 172 6 4 258 6 268 9.66e-27 110
MS.gene059953.t1 AT3G32047 28.897 263 173 4 39 298 53 304 4.88e-26 108
MS.gene059953.t1 AT4G15330 27.273 297 200 4 8 298 15 301 7.72e-26 107
MS.gene059953.t1 AT2G23220 30.566 265 166 9 27 277 45 305 8.03e-26 107
MS.gene059953.t1 AT2G14100 27.170 265 178 4 39 299 54 307 8.31e-26 107
MS.gene059953.t1 AT5G10600 28.632 234 159 4 23 249 41 273 8.39e-26 107
MS.gene059953.t1 AT2G27000 27.273 275 182 4 39 310 50 309 8.97e-26 107
MS.gene059953.t1 AT3G20130 26.894 264 180 4 39 299 53 306 1.24e-25 107
MS.gene059953.t1 AT5G10610 29.707 239 154 5 18 249 26 257 3.17e-25 105
MS.gene059953.t1 AT1G13710 31.879 298 168 18 3 285 26 303 3.52e-25 105
MS.gene059953.t1 AT4G37410 27.336 289 185 10 9 277 4 287 3.83e-25 105
MS.gene059953.t1 AT4G31950 27.715 267 156 6 29 277 33 280 1.13e-24 104
MS.gene059953.t1 AT3G20100 27.820 266 180 5 37 299 50 306 2.56e-24 103
MS.gene059953.t1 AT5G44620 25.843 267 186 3 37 299 55 313 3.94e-24 102
MS.gene059953.t1 AT3G26180 52.874 87 41 0 27 113 29 115 8.07e-24 100
MS.gene059953.t1 AT1G74550 25.726 241 168 4 15 247 12 249 8.62e-24 101
MS.gene059953.t1 AT2G46660 27.473 273 176 11 21 288 63 318 2.83e-23 100
MS.gene059953.t1 AT4G20235 45.098 102 55 1 152 252 1 102 2.94e-23 93.6
MS.gene059953.t1 AT3G20080 28.623 276 183 4 27 298 41 306 4.63e-23 99.8
MS.gene059953.t1 AT3G20080 28.623 276 183 4 27 298 41 306 4.63e-23 99.8
MS.gene059953.t1 AT4G37360 30.385 260 163 9 1 248 4 257 5.20e-23 99.4
MS.gene059953.t1 AT2G05180 26.136 264 183 3 39 299 52 306 1.91e-22 97.4
MS.gene059953.t1 AT5G06905 24.453 274 189 5 10 277 13 274 1.92e-22 97.8
MS.gene059953.t1 AT3G25180 23.166 259 184 5 25 277 36 285 2.81e-22 96.7
MS.gene059953.t1 AT4G12310 27.612 268 182 4 37 299 53 313 4.67e-22 96.7
MS.gene059953.t1 AT3G28740 29.452 292 167 11 27 302 38 306 4.86e-22 96.7
MS.gene059953.t1 AT3G61040 26.812 276 182 7 29 299 34 294 5.66e-22 95.5
MS.gene059953.t1 AT3G20960 25.600 250 173 3 53 299 67 306 7.12e-22 96.3
MS.gene059953.t1 AT3G25180 23.166 259 184 5 25 277 36 285 1.29e-21 95.5
MS.gene059953.t1 AT3G61040 26.812 276 182 7 29 299 34 294 1.48e-21 95.1
MS.gene059953.t1 AT5G47990 25.000 264 186 3 39 299 53 307 1.57e-21 95.1
MS.gene059953.t1 AT5G42580 26.482 253 164 5 48 299 60 291 1.94e-21 94.7
MS.gene059953.t1 AT1G74540 26.199 271 169 8 27 285 26 277 2.11e-21 94.7
MS.gene059953.t1 AT3G20120 28.571 315 197 5 8 310 12 310 2.35e-21 94.7
MS.gene059953.t1 AT4G12330 25.714 245 169 4 37 269 55 298 2.54e-21 94.4
MS.gene059953.t1 AT4G15350 26.038 265 183 3 39 299 45 300 2.64e-21 94.4
MS.gene059953.t1 AT2G45580 24.268 239 172 4 38 268 48 285 4.90e-21 92.8
MS.gene059953.t1 AT2G45580 24.268 239 172 4 38 268 48 285 6.06e-21 93.6
MS.gene059953.t1 AT5G09970 27.925 265 169 10 30 285 71 322 1.75e-20 92.0
MS.gene059953.t1 AT3G52970 28.125 288 182 11 1 277 10 283 2.11e-20 91.7
MS.gene059953.t1 AT1G74110 27.273 275 180 9 23 285 58 324 2.28e-20 91.7
MS.gene059953.t1 AT3G52970 26.578 301 178 11 4 277 13 297 4.82e-20 90.9
MS.gene059953.t1 AT1G28430 26.490 302 205 5 3 298 13 303 1.00e-19 89.7
MS.gene059953.t1 AT3G53290 27.391 230 150 6 80 302 10 229 1.99e-19 88.6
MS.gene059953.t1 AT3G61880 24.648 284 182 11 17 288 55 318 1.53e-17 83.6
MS.gene059953.t1 AT3G61880 24.648 284 182 11 17 288 55 318 1.59e-17 83.6
MS.gene059953.t1 AT5G25900 26.437 261 174 7 21 265 34 292 2.92e-17 82.4
MS.gene059953.t1 AT5G35715 25.258 194 140 3 63 251 1 194 2.98e-17 82.4
MS.gene059953.t1 AT3G53305 32.540 126 85 0 63 188 1 126 4.69e-17 80.9
MS.gene059953.t1 AT4G15380 26.316 247 168 4 53 298 68 301 1.31e-16 80.5
MS.gene059953.t1 AT3G10560 32.278 158 103 2 2 155 20 177 6.43e-16 78.6
MS.gene059953.t1 AT5G05260 26.786 224 141 6 20 222 32 253 8.97e-15 75.1
MS.gene059953.t1 AT2G27010 26.523 279 161 9 39 310 46 287 9.58e-15 75.1
MS.gene059953.t1 AT5G05260 26.786 224 141 6 20 222 32 253 1.06e-14 74.7
MS.gene059953.t1 AT1G58260 22.951 305 199 12 3 285 12 302 2.97e-14 73.6
MS.gene059953.t1 AT3G20130 24.537 216 151 3 86 299 73 278 8.44e-14 72.0
MS.gene059953.t1 AT2G22330 24.390 287 192 8 9 280 39 315 1.26e-13 71.6
MS.gene059953.t1 AT2G22330 24.390 287 192 8 9 280 62 338 1.34e-13 71.6
MS.gene059953.t1 AT4G15330 23.906 297 182 5 8 298 15 273 4.91e-13 69.7
MS.gene059953.t1 AT1G66540 24.294 177 111 4 113 280 3 165 1.48e-12 68.2
MS.gene059953.t1 AT1G16400 24.549 277 184 10 2 257 18 290 1.58e-12 68.2
MS.gene059953.t1 AT3G03470 27.950 161 102 4 1 153 7 161 1.68e-12 68.2
MS.gene059953.t1 AT1G13080 28.467 137 84 4 138 264 23 155 3.53e-12 67.0
MS.gene059953.t1 AT1G16410 23.256 258 173 8 23 257 36 291 5.53e-12 66.6
MS.gene059953.t1 AT1G16410 23.256 258 173 8 23 257 36 291 9.80e-12 65.9
MS.gene059953.t1 AT2G30490 26.064 188 132 4 39 219 44 231 1.64e-11 65.1

Find 57 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTATTATAGGGAATTT+TGG 0.208303 8.1:-19949497 None:intergenic
GATTGGATGACCAATGTTTC+TGG 0.209245 8.1:+19950058 MS.gene059953:CDS
CCAAGATGGAGTTGCATTAA+AGG 0.250425 8.1:-19949581 None:intergenic
CTTCCAAAATTCCCTATAAT+AGG 0.259049 8.1:+19949494 MS.gene059953:CDS
AGTCATTAAGGCCTTGTTAT+TGG 0.264045 8.1:+19950276 MS.gene059953:CDS
GATGGAGATTTCCTATTATA+GGG 0.269306 8.1:-19949505 None:intergenic
ACTATGTTCCTTGGCTTGAT+TGG 0.284214 8.1:+19950041 MS.gene059953:CDS
TAAACAGTTTGATGATCTTT+TGG 0.292425 8.1:+19950108 MS.gene059953:CDS
TATATTCACCGGTAAAGATT+TGG 0.302984 8.1:-19949879 None:intergenic
TGATGGAGATTTCCTATTAT+AGG 0.316077 8.1:-19949506 None:intergenic
TACAATCATATAAAAGTATA+TGG 0.328580 8.1:-19949703 None:intergenic
ATTATCTCACTTGCTGCTTC+AGG 0.349803 8.1:-19949632 None:intergenic
TATTGACAGAACAGTCATTA+AGG 0.354605 8.1:+19950264 MS.gene059953:CDS
CAATCTCTAGCTAAAGAATA+TGG 0.361893 8.1:+19949557 MS.gene059953:CDS
CCTTTAATGCAACTCCATCT+TGG 0.369942 8.1:+19949581 MS.gene059953:CDS
TTAATGACTGTTCTGTCAAT+AGG 0.371315 8.1:-19950262 None:intergenic
TTGTTGTTCCAAATCTTTAC+CGG 0.379734 8.1:+19949871 MS.gene059953:CDS
TATTGTTTGTAGGGTTGCTT+TGG 0.383227 8.1:+19949931 MS.gene059953:CDS
GCCGTTAGAGAGGAAGAAAT+TGG 0.388876 8.1:+19949824 MS.gene059953:CDS
AACCTAGGGATTCTGTCCTT+TGG 0.396509 8.1:-19950237 None:intergenic
CTATCAATGATATTGTTTGT+AGG 0.402540 8.1:+19949921 MS.gene059953:CDS
ATTGTTTGTAGGGTTGCTTT+GGG 0.403402 8.1:+19949932 MS.gene059953:CDS
CTTTAATGCAACTCCATCTT+GGG 0.405656 8.1:+19949582 MS.gene059953:CDS
TATCAATGATATTGTTTGTA+GGG 0.406629 8.1:+19949922 MS.gene059953:CDS
GGAAGAAATTGGTTTAATGA+TGG 0.426687 8.1:+19949835 MS.gene059953:CDS
AGAAAGTATAGTGGTGAAAG+TGG 0.435166 8.1:+19949956 MS.gene059953:CDS
ACCAATTTCTTCCTCTCTAA+CGG 0.458178 8.1:-19949825 None:intergenic
TGTCTCCAATACTCTCCATA+TGG 0.463829 8.1:-19949743 None:intergenic
CAAGATGGAGTTGCATTAAA+GGG 0.473288 8.1:-19949580 None:intergenic
CTGCTCCATATGGAGAGTAT+TGG 0.474577 8.1:+19949738 MS.gene059953:CDS
GATGTTTCAACTGCTCCATA+TGG 0.475946 8.1:+19949728 MS.gene059953:CDS
GGTGATGAGATTATAAGAAC+TGG 0.479349 8.1:-19949611 None:intergenic
TTGTTGGTGACTATGTTCCT+TGG 0.479480 8.1:+19950032 MS.gene059953:CDS
GAAATGTGCGGTGAGGGAAT+AGG 0.481336 8.1:-19949535 None:intergenic
ATATGGTAAAGTTTAGTTTG+AGG 0.502054 8.1:-19949686 None:intergenic
GATCATATCAATCGTCAGAA+AGG 0.507553 8.1:+19950145 MS.gene059953:CDS
GAGGGAATAGGCCAAGTTGA+TGG 0.509662 8.1:-19949523 None:intergenic
TGCATAAAATCCAGAAACAT+TGG 0.523487 8.1:-19950068 None:intergenic
AACAATATCATTGATAGTTG+TGG 0.539283 8.1:-19949915 None:intergenic
GAGATTGAAATGTGCGGTGA+GGG 0.557035 8.1:-19949541 None:intergenic
GAAAGTATAGTGGTGAAAGT+GGG 0.558562 8.1:+19949957 MS.gene059953:CDS
AGAAAATCACTTATATTCAC+CGG 0.563419 8.1:-19949890 None:intergenic
TATAGTGGTGAAAGTGGGAA+GGG 0.564843 8.1:+19949962 MS.gene059953:CDS
TTGTTTGTAGGGTTGCTTTG+GGG 0.567701 8.1:+19949933 MS.gene059953:CDS
GCTTTGGGGAGAAAGTATAG+TGG 0.570317 8.1:+19949947 MS.gene059953:CDS
TTCTGTCAATAGGAAAACCT+AGG 0.583897 8.1:-19950252 None:intergenic
ATAGGAAATCTCCATCAACT+TGG 0.584691 8.1:+19949512 MS.gene059953:CDS
GTAAAGATTTGGAACAACAA+TGG 0.590374 8.1:-19949868 None:intergenic
GAACTGGTACACTCCCAAGA+TGG 0.593068 8.1:-19949595 None:intergenic
GTATAGTGGTGAAAGTGGGA+AGG 0.596303 8.1:+19949961 MS.gene059953:CDS
ATCTCTTCGAGCCGTTAGAG+AGG 0.607997 8.1:+19949814 MS.gene059953:CDS
TTGGTCATCCAATCAAGCCA+AGG 0.637668 8.1:-19950049 None:intergenic
AGAGATTGAAATGTGCGGTG+AGG 0.657309 8.1:-19949542 None:intergenic
TCTGTCAATAGGAAAACCTA+GGG 0.657959 8.1:-19950251 None:intergenic
ATCCAAAGGACAGAATCCCT+AGG 0.678330 8.1:+19950235 MS.gene059953:CDS
TAGCTAGAGATTGAAATGTG+CGG 0.682083 8.1:-19949547 None:intergenic
AAACATCAACAAAGTCACGT+TGG 0.706566 8.1:-19950204 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACAATCATATAAAAGTATA+TGG - chr8.1:19949706-19949725 None:intergenic 15.0%
!! GGGATTTAAAAAGTTATTAA+TGG + chr8.1:19949982-19950001 MS.gene059953:CDS 20.0%
!! TATCAATGATATTGTTTGTA+GGG + chr8.1:19949922-19949941 MS.gene059953:CDS 20.0%
! AGAAAATCACTTATATTCAC+CGG - chr8.1:19949893-19949912 None:intergenic 25.0%
! CTATCAATGATATTGTTTGT+AGG + chr8.1:19949921-19949940 MS.gene059953:CDS 25.0%
!! AACAATATCATTGATAGTTG+TGG - chr8.1:19949918-19949937 None:intergenic 25.0%
!! AATCTCTATATTTTGCTTTG+TGG + chr8.1:19950314-19950333 MS.gene059953:CDS 25.0%
!! TTGAGATACCATTTTATTAG+CGG - chr8.1:19949443-19949462 None:intergenic 25.0%
!! TTTCCTATTATAGGGAATTT+TGG - chr8.1:19949500-19949519 None:intergenic 25.0%
!! TTTTACACTTACCAATAACA+AGG - chr8.1:19950290-19950309 None:intergenic 25.0%
!!! ATATGGTAAAGTTTAGTTTG+AGG - chr8.1:19949689-19949708 None:intergenic 25.0%
!!! TAAACAGTTTGATGATCTTT+TGG + chr8.1:19950108-19950127 MS.gene059953:CDS 25.0%
CAATCTCTAGCTAAAGAATA+TGG + chr8.1:19949557-19949576 MS.gene059953:CDS 30.0%
CTTCCAAAATTCCCTATAAT+AGG + chr8.1:19949494-19949513 MS.gene059953:CDS 30.0%
GATGGAGATTTCCTATTATA+GGG - chr8.1:19949508-19949527 None:intergenic 30.0%
TATATTCACCGGTAAAGATT+TGG - chr8.1:19949882-19949901 None:intergenic 30.0%
TATTGACAGAACAGTCATTA+AGG + chr8.1:19950264-19950283 MS.gene059953:CDS 30.0%
TGATGGAGATTTCCTATTAT+AGG - chr8.1:19949509-19949528 None:intergenic 30.0%
TGCATAAAATCCAGAAACAT+TGG - chr8.1:19950071-19950090 None:intergenic 30.0%
TTAATGACTGTTCTGTCAAT+AGG - chr8.1:19950265-19950284 None:intergenic 30.0%
! ACCATTTTATTAGCGGAAAA+AGG - chr8.1:19949436-19949455 None:intergenic 30.0%
! ACTTTGTTGATGTTTTGCTT+TGG + chr8.1:19950212-19950231 MS.gene059953:CDS 30.0%
! ATGGATTTTACTGAGTTACT+TGG + chr8.1:19950001-19950020 MS.gene059953:CDS 30.0%
! GGAAGAAATTGGTTTAATGA+TGG + chr8.1:19949835-19949854 MS.gene059953:CDS 30.0%
! GTAAAGATTTGGAACAACAA+TGG - chr8.1:19949871-19949890 None:intergenic 30.0%
! TCCTTTTTCCGCTAATAAAA+TGG + chr8.1:19949432-19949451 MS.gene059953:CDS 30.0%
! TTGTTGTTCCAAATCTTTAC+CGG + chr8.1:19949871-19949890 MS.gene059953:CDS 30.0%
!! TTACTTGGTACTTTTGTTGT+TGG + chr8.1:19950016-19950035 MS.gene059953:CDS 30.0%
AAACATCAACAAAGTCACGT+TGG - chr8.1:19950207-19950226 None:intergenic 35.0%
ACCAATTTCTTCCTCTCTAA+CGG - chr8.1:19949828-19949847 None:intergenic 35.0%
ATAGGAAATCTCCATCAACT+TGG + chr8.1:19949512-19949531 MS.gene059953:CDS 35.0%
CAAGATGGAGTTGCATTAAA+GGG - chr8.1:19949583-19949602 None:intergenic 35.0%
CTTTAATGCAACTCCATCTT+GGG + chr8.1:19949582-19949601 MS.gene059953:CDS 35.0%
GATCATATCAATCGTCAGAA+AGG + chr8.1:19950145-19950164 MS.gene059953:CDS 35.0%
GGTGATGAGATTATAAGAAC+TGG - chr8.1:19949614-19949633 None:intergenic 35.0%
TAGCTAGAGATTGAAATGTG+CGG - chr8.1:19949550-19949569 None:intergenic 35.0%
TATTGTTTGTAGGGTTGCTT+TGG + chr8.1:19949931-19949950 MS.gene059953:CDS 35.0%
TCTGTCAATAGGAAAACCTA+GGG - chr8.1:19950254-19950273 None:intergenic 35.0%
TTCTGTCAATAGGAAAACCT+AGG - chr8.1:19950255-19950274 None:intergenic 35.0%
! AAGAGAAGGTGGTAAGTTTT+TGG - chr8.1:19949477-19949496 None:intergenic 35.0%
! AGAAAGTATAGTGGTGAAAG+TGG + chr8.1:19949956-19949975 MS.gene059953:CDS 35.0%
! ATTGTTTGTAGGGTTGCTTT+GGG + chr8.1:19949932-19949951 MS.gene059953:CDS 35.0%
! GAAAGTATAGTGGTGAAAGT+GGG + chr8.1:19949957-19949976 MS.gene059953:CDS 35.0%
!! ACAGTTTGATGATCTTTTGG+AGG + chr8.1:19950111-19950130 MS.gene059953:CDS 35.0%
!! AGTCATTAAGGCCTTGTTAT+TGG + chr8.1:19950276-19950295 MS.gene059953:CDS 35.0%
!! ATAGGGAATTTTGGAAGAGA+AGG - chr8.1:19949491-19949510 None:intergenic 35.0%
!! ATGTTTTGCTTTGGATCCAA+AGG + chr8.1:19950221-19950240 MS.gene059953:CDS 35.0%
CCAAGATGGAGTTGCATTAA+AGG - chr8.1:19949584-19949603 None:intergenic 40.0%
CCTTTAATGCAACTCCATCT+TGG + chr8.1:19949581-19949600 MS.gene059953:CDS 40.0%
GATGTTTCAACTGCTCCATA+TGG + chr8.1:19949728-19949747 MS.gene059953:CDS 40.0%
GATTGGATGACCAATGTTTC+TGG + chr8.1:19950058-19950077 MS.gene059953:CDS 40.0%
TATAGTGGTGAAAGTGGGAA+GGG + chr8.1:19949962-19949981 MS.gene059953:CDS 40.0%
TGTCTCCAATACTCTCCATA+TGG - chr8.1:19949746-19949765 None:intergenic 40.0%
! ACTATGTTCCTTGGCTTGAT+TGG + chr8.1:19950041-19950060 MS.gene059953:CDS 40.0%
! ATTATCTCACTTGCTGCTTC+AGG - chr8.1:19949635-19949654 None:intergenic 40.0%
! TTGTTTGTAGGGTTGCTTTG+GGG + chr8.1:19949933-19949952 MS.gene059953:CDS 40.0%
!! TTGTTGGTGACTATGTTCCT+TGG + chr8.1:19950032-19950051 MS.gene059953:CDS 40.0%
AACCTAGGGATTCTGTCCTT+TGG - chr8.1:19950240-19950259 None:intergenic 45.0%
AGAGATTGAAATGTGCGGTG+AGG - chr8.1:19949545-19949564 None:intergenic 45.0%
ATCCAAAGGACAGAATCCCT+AGG + chr8.1:19950235-19950254 MS.gene059953:CDS 45.0%
GAGATTGAAATGTGCGGTGA+GGG - chr8.1:19949544-19949563 None:intergenic 45.0%
GCCGTTAGAGAGGAAGAAAT+TGG + chr8.1:19949824-19949843 MS.gene059953:CDS 45.0%
GTATAGTGGTGAAAGTGGGA+AGG + chr8.1:19949961-19949980 MS.gene059953:CDS 45.0%
TTGGTCATCCAATCAAGCCA+AGG - chr8.1:19950052-19950071 None:intergenic 45.0%
! CTGCTCCATATGGAGAGTAT+TGG + chr8.1:19949738-19949757 MS.gene059953:CDS 45.0%
!! GCTTTGGGGAGAAAGTATAG+TGG + chr8.1:19949947-19949966 MS.gene059953:CDS 45.0%
!! GGGAATTTTGGAAGAGAAGG+TGG - chr8.1:19949488-19949507 None:intergenic 45.0%
ATCTCTTCGAGCCGTTAGAG+AGG + chr8.1:19949814-19949833 MS.gene059953:CDS 50.0%
GAAATGTGCGGTGAGGGAAT+AGG - chr8.1:19949538-19949557 None:intergenic 50.0%
GAACTGGTACACTCCCAAGA+TGG - chr8.1:19949598-19949617 None:intergenic 50.0%
! GAGGGAATAGGCCAAGTTGA+TGG - chr8.1:19949526-19949545 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 19949401 19950342 19949401 ID=MS.gene059953
chr8.1 mRNA 19949401 19950342 19949401 ID=MS.gene059953.t1;Parent=MS.gene059953
chr8.1 exon 19949401 19950342 19949401 ID=MS.gene059953.t1.exon1;Parent=MS.gene059953.t1
chr8.1 CDS 19949401 19950342 19949401 ID=cds.MS.gene059953.t1;Parent=MS.gene059953.t1
Gene Sequence

>MS.gene059953

ATGCTTCTCATAATCTCTTCAATCTTTCTCGTCCTTTTTCCGCTAATAAAATGGTATCTCAATTCTACAAAAACCAAAAACTTACCACCTTCTCTTCCAAAATTCCCTATAATAGGAAATCTCCATCAACTTGGCCTATTCCCTCACCGCACATTTCAATCTCTAGCTAAAGAATATGGCCCTTTAATGCAACTCCATCTTGGGAGTGTACCAGTTCTTATAATCTCATCACCTGAAGCAGCAAGTGAGATAATGAAAACTCATGATCGTGTTTTTGCAAACAGACCTCAAACTAAACTTTACCATATACTTTTATATGATTGTAAAGATGTTTCAACTGCTCCATATGGAGAGTATTGGAGACAGATAAGAAGCATCTCAGTTTTACATCTTCTCAGTGCTAAAAGAGTTCAATCTCTTCGAGCCGTTAGAGAGGAAGAAATTGGTTTAATGATGGAGAAAATAAACCATTGTTGTTCCAAATCTTTACCGGTGAATATAAGTGATTTTCTCGCCACAACTATCAATGATATTGTTTGTAGGGTTGCTTTGGGGAGAAAGTATAGTGGTGAAAGTGGGAAGGGATTTAAAAAGTTATTAATGGATTTTACTGAGTTACTTGGTACTTTTGTTGTTGGTGACTATGTTCCTTGGCTTGATTGGATGACCAATGTTTCTGGATTTTATGCAAGAGCAAAAAAAGTTGCTAAACAGTTTGATGATCTTTTGGAGGATGTAGTTGAAGATCATATCAATCGTCAGAAAGGAGCTAGTGATGAGCAAGTTTGTTTAGATACTGAAGACCAACGTGACTTTGTTGATGTTTTGCTTTGGATCCAAAGGACAGAATCCCTAGGTTTTCCTATTGACAGAACAGTCATTAAGGCCTTGTTATTGGTAAGTGTAAAACTAAAATCTCTATATTTTGCTTTGTGGAGCTAA

Protein sequence

>MS.gene059953.t1

MLLIISSIFLVLFPLIKWYLNSTKTKNLPPSLPKFPIIGNLHQLGLFPHRTFQSLAKEYGPLMQLHLGSVPVLIISSPEAASEIMKTHDRVFANRPQTKLYHILLYDCKDVSTAPYGEYWRQIRSISVLHLLSAKRVQSLRAVREEEIGLMMEKINHCCSKSLPVNISDFLATTINDIVCRVALGRKYSGESGKGFKKLLMDFTELLGTFVVGDYVPWLDWMTNVSGFYARAKKVAKQFDDLLEDVVEDHINRQKGASDEQVCLDTEDQRDFVDVLLWIQRTESLGFPIDRTVIKALLLVSVKLKSLYFALWS