AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26610.t1 MTR_4g088005 95.798 119 5 0 1 119 1 119 4.06e-85 244
MS.gene26610.t1 MTR_2g015040 70.229 131 31 3 1 123 1 131 3.67e-59 180
MS.gene26610.t1 MTR_8g006840 48.276 145 46 5 9 124 52 196 9.47e-41 135
MS.gene26610.t1 MTR_4g100380 44.755 143 42 1 9 114 60 202 6.18e-37 127
MS.gene26610.t1 MTR_1g074370 52.033 123 52 2 11 133 28 143 1.78e-32 114
MS.gene26610.t1 MTR_1g070070 62.195 82 31 0 37 118 1 82 3.77e-32 111
MS.gene26610.t1 MTR_7g081805 59.223 103 33 4 16 115 23 119 3.80e-32 113
MS.gene26610.t1 MTR_7g096700 66.667 78 24 1 46 121 9 86 5.42e-32 110
MS.gene26610.t1 MTR_7g081795 49.138 116 54 1 13 128 21 131 1.02e-31 112
MS.gene26610.t1 MTR_2g015050 68.056 72 23 0 43 114 120 191 1.59e-31 113
MS.gene26610.t1 MTR_7g081815 71.642 67 19 0 55 121 59 125 2.50e-31 111
MS.gene26610.t1 MTR_8g006815 64.000 75 23 1 55 125 94 168 7.72e-31 109
MS.gene26610.t1 MTR_4g100450 68.116 69 22 0 46 114 143 211 1.09e-30 112
MS.gene26610.t1 MTR_7g021010 63.218 87 29 2 30 114 22 107 1.89e-30 108
MS.gene26610.t1 MTR_8g006825 73.770 61 16 0 55 115 94 154 4.21e-30 108
MS.gene26610.t1 MTR_7g020980 62.069 87 30 2 30 114 22 107 4.22e-30 107
MS.gene26610.t1 MTR_4g100420 62.162 74 28 0 46 119 146 219 1.69e-29 108
MS.gene26610.t1 MTR_7g096750 66.197 71 24 0 46 116 9 79 1.69e-29 104
MS.gene26610.t1 MTR_4g054360 52.830 106 28 2 11 116 100 183 2.43e-29 107
MS.gene26610.t1 MTR_1g070015 47.748 111 47 2 3 113 41 140 5.33e-29 105
MS.gene26610.t1 MTR_1g048610 70.769 65 19 0 55 119 87 151 1.07e-28 105
MS.gene26610.t1 MTR_1g074230 70.968 62 18 0 57 118 19 80 1.54e-28 102
MS.gene26610.t1 MTR_1g090290 58.537 82 29 1 33 114 94 170 1.88e-28 103
MS.gene26610.t1 MTR_7g021010 72.308 65 17 1 50 114 5 68 1.92e-28 101
MS.gene26610.t1 MTR_1g074310 56.471 85 35 1 40 122 2 86 2.43e-28 101
MS.gene26610.t1 MTR_4g054740 54.945 91 34 2 33 116 66 156 2.57e-28 104
MS.gene26610.t1 MTR_1g069985 48.077 104 53 1 10 113 29 131 1.76e-27 101
MS.gene26610.t1 MTR_4g054860 69.841 63 19 0 54 116 128 190 1.94e-27 102
MS.gene26610.t1 MTR_1g043350 49.123 114 56 2 1 113 26 138 2.10e-27 101
MS.gene26610.t1 MTR_1g070000 46.847 111 48 2 3 113 41 140 3.19e-27 101
MS.gene26610.t1 MTR_5g009620 61.538 78 26 2 51 125 106 182 1.99e-26 100
MS.gene26610.t1 MTR_1g070045 60.000 70 28 0 44 113 53 122 2.55e-26 97.4
MS.gene26610.t1 MTR_1g070035 43.333 120 58 2 7 116 17 136 3.89e-26 98.2
MS.gene26610.t1 MTR_1g070020 64.062 64 23 0 50 113 63 126 1.89e-25 96.3
MS.gene26610.t1 MTR_2g435590 70.769 65 18 1 50 114 89 152 4.55e-25 96.3
MS.gene26610.t1 MTR_2g438180 67.213 61 20 0 57 117 14 74 4.81e-25 93.2
MS.gene26610.t1 MTR_7g096810 64.103 78 23 1 57 129 13 90 1.12e-24 92.0
MS.gene26610.t1 MTR_2g105380 47.115 104 52 2 36 137 96 198 1.38e-24 97.1
MS.gene26610.t1 MTR_2g078680 57.143 84 34 2 31 114 6 87 3.69e-24 92.8
MS.gene26610.t1 MTR_1g074250 66.667 63 20 1 57 118 19 81 5.17e-24 90.5
MS.gene26610.t1 MTR_8g022820 60.000 75 29 1 42 116 109 182 1.05e-23 94.7
MS.gene26610.t1 MTR_8g022820 60.000 75 29 1 42 116 109 182 1.05e-23 94.7
MS.gene26610.t1 MTR_8g022820 60.000 75 29 1 42 116 108 181 1.09e-23 94.7
MS.gene26610.t1 MTR_4g086165 67.742 62 19 1 53 114 78 138 1.36e-23 91.3
MS.gene26610.t1 MTR_4g086160 70.690 58 16 1 57 114 96 152 2.29e-23 91.3
MS.gene26610.t1 MTR_8g092460 55.696 79 34 1 54 132 142 219 2.72e-23 92.8
MS.gene26610.t1 MTR_4g086190 70.690 58 16 1 57 114 96 152 4.11e-23 90.5
MS.gene26610.t1 MTR_1g087920 64.179 67 23 1 50 116 70 135 4.73e-23 92.0
MS.gene26610.t1 MTR_4g086220 70.690 58 16 1 57 114 96 152 5.45e-23 90.5
MS.gene26610.t1 MTR_2g014300 66.129 62 20 1 53 114 11 71 2.19e-22 87.4
MS.gene26610.t1 MTR_1g040430 45.946 111 59 1 4 114 59 168 2.46e-22 87.8
MS.gene26610.t1 MTR_2g014340 65.079 63 21 1 52 114 14 75 3.54e-22 87.4
MS.gene26610.t1 MTR_5g085070 57.971 69 28 1 46 114 40 107 4.69e-22 89.0
MS.gene26610.t1 MTR_1g069945 56.044 91 33 2 25 115 76 159 5.02e-22 88.2
MS.gene26610.t1 MTR_8g099215 45.045 111 54 2 23 127 67 176 5.23e-22 89.4
MS.gene26610.t1 MTR_5g085100 65.079 63 21 1 52 114 41 102 9.16e-22 88.2
MS.gene26610.t1 MTR_3g074130 56.627 83 33 2 33 115 128 207 1.06e-21 89.0
MS.gene26610.t1 MTR_1g069960 65.079 63 22 0 57 119 27 89 1.33e-21 84.7
MS.gene26610.t1 MTR_1g069940 56.044 91 33 2 25 115 70 153 1.59e-21 86.7
MS.gene26610.t1 MTR_4g078710 58.904 73 28 2 57 129 28 98 1.62e-21 86.3
MS.gene26610.t1 MTR_3g053690 65.079 63 21 1 52 114 22 83 1.67e-21 86.3
MS.gene26610.t1 MTR_3g090760 64.407 59 20 1 55 113 111 168 1.73e-21 88.2
MS.gene26610.t1 MTR_7g096830 65.672 67 23 0 50 116 91 157 2.16e-21 86.3
MS.gene26610.t1 MTR_1g028560 63.333 60 21 1 54 113 112 170 8.23e-21 86.3
MS.gene26610.t1 MTR_8g090350 65.574 61 20 1 55 115 111 170 8.76e-21 85.5
MS.gene26610.t1 MTR_5g062700 67.213 61 19 1 55 115 171 230 1.57e-20 85.9
MS.gene26610.t1 MTR_7g096780 68.852 61 19 0 53 113 81 141 2.23e-20 83.6
MS.gene26610.t1 MTR_8g069360 68.421 57 17 1 57 113 44 99 2.86e-20 85.5
MS.gene26610.t1 MTR_5g032820 61.972 71 26 1 57 127 46 115 2.92e-20 85.1
MS.gene26610.t1 MTR_1g090170 47.253 91 41 2 31 115 120 209 3.80e-20 84.3
MS.gene26610.t1 MTR_1g090170 47.253 91 41 2 31 115 207 296 4.64e-20 84.7
MS.gene26610.t1 MTR_7g092190 62.712 59 21 1 57 115 30 87 1.59e-19 82.0
MS.gene26610.t1 MTR_5g075570 56.250 64 27 1 51 114 118 180 2.31e-19 81.6
MS.gene26610.t1 MTR_2g090235 62.295 61 22 1 57 117 218 277 2.69e-19 82.8
MS.gene26610.t1 MTR_2g089170 58.065 62 25 1 54 115 62 122 5.36e-19 79.0
MS.gene26610.t1 MTR_7g084370 56.000 75 31 2 57 130 42 115 6.16e-19 80.5
MS.gene26610.t1 MTR_3g098580 56.977 86 36 1 29 114 48 132 6.75e-19 80.1
MS.gene26610.t1 MTR_6g088405 52.632 76 33 3 57 131 44 117 1.19e-18 78.6
MS.gene26610.t1 MTR_3g102100 41.489 94 51 2 25 115 10 102 2.58e-18 76.6
MS.gene26610.t1 MTR_5g083340 63.793 58 20 1 57 114 85 141 4.65e-18 79.3
MS.gene26610.t1 MTR_4g119270 50.667 75 36 1 57 131 53 126 4.69e-18 79.0
MS.gene26610.t1 MTR_5g083330 51.282 78 35 2 44 119 22 98 6.38e-18 78.2
MS.gene26610.t1 MTR_0939s0010 58.065 62 25 1 54 115 62 122 7.22e-18 76.3
MS.gene26610.t1 MTR_6g029180 48.837 86 43 1 50 135 26 110 7.70e-18 78.2
MS.gene26610.t1 MTR_3g110205 54.688 64 28 1 51 114 37 99 1.35e-17 75.1
MS.gene26610.t1 MTR_2g019750 56.250 64 27 1 57 120 50 112 2.14e-17 76.6
MS.gene26610.t1 MTR_8g013860 52.381 63 29 1 53 115 43 104 3.69e-17 74.3
MS.gene26610.t1 MTR_8g006410 49.333 75 37 1 57 131 52 125 4.15e-17 74.3
MS.gene26610.t1 MTR_4g114570 48.780 82 33 2 52 133 2 74 4.26e-17 74.3
MS.gene26610.t1 MTR_1g074280 49.333 75 38 0 57 131 17 91 4.42e-17 72.4
MS.gene26610.t1 MTR_4g010640 54.286 70 31 1 52 121 2 70 5.11e-17 74.3
MS.gene26610.t1 MTR_7g046260 42.708 96 47 2 43 131 40 134 5.47e-17 74.7
MS.gene26610.t1 MTR_3g095190 67.692 65 20 1 54 118 167 230 6.64e-17 75.9
MS.gene26610.t1 MTR_4g008860 45.882 85 45 1 54 138 5 88 8.02e-17 73.6
MS.gene26610.t1 MTR_4g035430 46.753 77 40 1 57 133 32 107 8.12e-17 73.9
MS.gene26610.t1 MTR_7g011630 42.574 101 48 3 13 113 7 97 1.37e-16 75.1
MS.gene26610.t1 MTR_6g033255 75.806 62 14 1 53 114 16 76 1.71e-16 72.8
MS.gene26610.t1 MTR_7g117690 47.945 73 36 2 57 129 28 98 1.85e-16 72.0
MS.gene26610.t1 MTR_2g016730 50.633 79 36 2 37 113 1 78 2.42e-16 73.9
MS.gene26610.t1 MTR_7g085810 47.561 82 42 1 57 138 30 110 2.56e-16 73.2
MS.gene26610.t1 MTR_2g043050 54.839 62 23 2 57 116 19 77 2.59e-16 72.4
MS.gene26610.t1 MTR_4g111915 53.623 69 27 2 54 118 50 117 2.79e-16 70.9
MS.gene26610.t1 MTR_1g074290 49.333 75 38 0 57 131 17 91 2.95e-16 71.2
MS.gene26610.t1 MTR_2g103700 55.556 63 27 1 52 114 2 63 3.21e-16 71.2
MS.gene26610.t1 MTR_3g106290 52.381 63 29 1 54 116 5 66 4.02e-16 71.6
MS.gene26610.t1 MTR_8g102800 46.667 75 39 1 57 131 37 110 4.31e-16 72.4
MS.gene26610.t1 MTR_6g012970 58.333 60 24 1 54 113 35 93 4.71e-16 73.6
MS.gene26610.t1 MTR_4g112490 53.623 69 27 2 54 118 50 117 6.97e-16 71.2
MS.gene26610.t1 MTR_2g101340 44.000 75 41 1 57 131 41 114 7.44e-16 71.2
MS.gene26610.t1 MTR_5g012910 46.667 75 39 1 57 131 28 101 9.75e-16 70.1
MS.gene26610.t1 MTR_2g043030 53.226 62 24 2 57 116 19 77 1.20e-15 70.5
MS.gene26610.t1 MTR_5g008540 43.011 93 48 4 32 124 2 89 1.20e-15 67.8
MS.gene26610.t1 MTR_1g019110 52.459 61 28 1 55 115 42 101 1.22e-15 70.1
MS.gene26610.t1 MTR_4g100650 44.156 77 42 1 55 131 72 147 1.22e-15 71.2
MS.gene26610.t1 MTR_8g085960 57.895 57 23 1 57 113 25 80 1.30e-15 70.9
MS.gene26610.t1 MTR_1g097190 53.731 67 29 2 57 122 23 88 1.77e-15 68.6
MS.gene26610.t1 MTR_8g032610 50.000 70 34 1 44 113 14 82 2.31e-15 71.2
MS.gene26610.t1 MTR_8g027465 50.000 60 29 1 57 116 39 97 3.62e-15 68.6
MS.gene26610.t1 MTR_7g070220 54.688 64 23 1 56 113 77 140 4.10e-15 71.2
MS.gene26610.t1 MTR_5g082950 56.667 60 25 1 54 113 63 121 4.49e-15 70.5
MS.gene26610.t1 MTR_5g008470 35.780 109 52 4 9 114 38 131 8.48e-15 67.8
MS.gene26610.t1 MTR_5g016750 38.384 99 58 3 40 138 9 104 9.94e-15 67.8
MS.gene26610.t1 MTR_3g017420 58.824 51 20 1 64 114 2 51 1.16e-14 64.7
MS.gene26610.t1 MTR_2g043040 51.613 62 25 2 57 116 19 77 1.35e-14 68.2
MS.gene26610.t1 MTR_4g082345 55.000 60 26 1 54 113 45 103 2.11e-14 68.6
MS.gene26610.t1 MTR_1g014800 39.000 100 51 5 42 136 17 111 3.82e-14 66.6
MS.gene26610.t1 MTR_4g102670 41.975 81 45 2 53 133 11 89 3.90e-14 65.9
MS.gene26610.t1 MTR_1g014860 49.206 63 27 2 55 115 20 79 5.32e-14 66.2
MS.gene26610.t1 MTR_1g014820 49.206 63 27 2 55 115 25 84 5.83e-14 67.0
MS.gene26610.t1 MTR_1g014780 48.438 64 28 2 54 115 35 95 7.35e-14 66.2
MS.gene26610.t1 MTR_1g101600 39.175 97 55 3 33 129 19 111 1.39e-13 65.1
MS.gene26610.t1 MTR_1g006660 57.627 59 24 1 57 115 47 104 1.62e-13 65.5
MS.gene26610.t1 MTR_8g023680 66.667 42 13 1 57 98 116 156 2.59e-13 65.9
MS.gene26610.t1 MTR_2g043020 50.000 62 26 2 57 116 19 77 2.72e-13 64.3
MS.gene26610.t1 MTR_2g085015 40.789 76 44 1 57 131 47 122 3.29e-13 64.3
MS.gene26610.t1 MTR_1g074270 60.417 48 18 1 72 118 22 69 5.20e-13 61.6
MS.gene26610.t1 MTR_6g088425 52.174 69 31 2 53 121 45 111 5.50e-13 63.9
MS.gene26610.t1 MTR_3g105510 39.362 94 49 4 45 136 27 114 6.72e-13 63.9
MS.gene26610.t1 MTR_6g465690 39.815 108 58 4 6 113 18 118 2.36e-12 62.4
MS.gene26610.t1 MTR_5g085125 41.975 81 46 1 53 133 12 91 3.95e-12 60.5
MS.gene26610.t1 MTR_6g466130 38.824 85 50 2 45 129 54 136 4.52e-12 61.2
MS.gene26610.t1 MTR_8g023700 66.667 42 13 1 57 98 117 157 5.28e-12 62.0
MS.gene26610.t1 MTR_6g465510 46.377 69 36 1 45 113 21 88 5.31e-12 60.8
MS.gene26610.t1 MTR_1g105400 61.905 42 15 1 57 98 115 155 8.61e-12 61.6
MS.gene26610.t1 MTR_1g023170 49.333 75 33 2 41 115 28 97 9.02e-12 60.8
MS.gene26610.t1 MTR_6g465530 46.377 69 36 1 45 113 21 88 1.44e-11 59.7
MS.gene26610.t1 MTR_6g466000 40.909 88 49 2 26 113 28 112 1.49e-11 60.1
MS.gene26610.t1 MTR_5g008790 44.776 67 34 2 55 119 16 81 1.64e-11 58.9
MS.gene26610.t1 MTR_6g465850 42.466 73 40 2 57 129 63 133 1.80e-11 60.1
MS.gene26610.t1 MTR_6g465430 46.377 69 36 1 45 113 42 109 1.82e-11 60.1
MS.gene26610.t1 MTR_1g098460 66.667 57 18 1 64 120 146 201 2.76e-11 60.1
MS.gene26610.t1 MTR_4g009260 57.534 73 30 1 54 126 74 145 3.12e-11 58.9
MS.gene26610.t1 MTR_6g465460 46.377 69 36 1 45 113 42 109 3.31e-11 59.3
MS.gene26610.t1 MTR_5g008550 38.384 99 53 3 32 130 2 92 3.40e-11 58.5
MS.gene26610.t1 MTR_5g053920 44.928 69 35 1 45 113 54 119 3.43e-11 59.7
MS.gene26610.t1 MTR_3g105480 38.750 80 43 3 59 136 33 108 7.08e-11 58.2
MS.gene26610.t1 MTR_6g465420 50.877 57 27 1 57 113 54 109 8.27e-11 58.2
MS.gene26610.t1 MTR_1g093600 43.478 69 36 1 44 112 51 116 9.09e-11 58.5
MS.gene26610.t1 MTR_5g009410 64.062 64 22 1 52 115 112 174 9.32e-11 58.5
MS.gene26610.t1 MTR_5g008590 56.897 58 24 1 57 114 11 67 9.68e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26610.t1 AT5G47220 52.756 127 37 3 11 114 48 174 1.97e-40 135
MS.gene26610.t1 AT2G44840 52.941 119 44 1 9 115 32 150 9.40e-38 128
MS.gene26610.t1 AT4G17500 46.763 139 43 2 7 114 67 205 2.60e-37 128
MS.gene26610.t1 AT3G23240 55.238 105 43 2 11 113 36 138 1.65e-36 124
MS.gene26610.t1 AT5G43410 74.194 62 16 0 57 118 15 76 2.31e-30 106
MS.gene26610.t1 AT5G47230 74.194 62 16 0 53 114 152 213 4.88e-29 107
MS.gene26610.t1 AT3G23230 67.692 65 21 0 53 117 16 80 7.56e-29 102
MS.gene26610.t1 AT5G51190 72.131 61 17 0 54 114 69 129 9.42e-29 105
MS.gene26610.t1 AT4G17490 72.581 62 17 0 53 114 133 194 2.70e-28 105
MS.gene26610.t1 AT2G33710 68.116 69 21 1 46 114 59 126 4.45e-28 103
MS.gene26610.t1 AT2G33710 68.116 69 21 1 46 114 59 126 4.98e-28 103
MS.gene26610.t1 AT2G31230 55.556 90 33 1 32 114 54 143 6.68e-28 103
MS.gene26610.t1 AT5G13330 54.545 88 36 2 40 127 25 108 1.20e-27 102
MS.gene26610.t1 AT4G18450 73.438 64 16 1 51 113 104 167 2.90e-27 103
MS.gene26610.t1 AT5G61600 60.563 71 28 0 55 125 86 156 3.35e-27 101
MS.gene26610.t1 AT5G61890 53.763 93 34 3 35 127 72 155 6.89e-26 98.2
MS.gene26610.t1 AT3G61630 55.952 84 34 2 49 130 97 179 7.03e-26 99.8
MS.gene26610.t1 AT5G07580 61.538 65 25 0 52 116 105 169 8.43e-26 97.1
MS.gene26610.t1 AT3G23220 68.571 70 22 0 48 117 5 74 5.54e-25 93.2
MS.gene26610.t1 AT3G16770 62.667 75 26 2 41 114 62 135 9.83e-25 95.1
MS.gene26610.t1 AT2G47520 66.667 63 20 1 53 115 46 107 2.16e-24 92.4
MS.gene26610.t1 AT5G53290 61.333 75 26 2 39 113 109 180 3.91e-24 95.5
MS.gene26610.t1 AT1G03800 46.296 108 46 3 15 114 6 109 5.13e-24 93.2
MS.gene26610.t1 AT4G27950 66.667 60 19 1 54 113 115 173 2.34e-23 93.2
MS.gene26610.t1 AT1G72360 48.571 105 48 3 20 119 32 135 3.79e-23 91.3
MS.gene26610.t1 AT1G04370 72.581 62 17 0 57 118 20 81 3.89e-23 88.2
MS.gene26610.t1 AT1G72360 66.667 63 20 1 57 119 25 86 4.52e-23 90.1
MS.gene26610.t1 AT1G72360 46.729 107 49 3 20 119 32 137 6.30e-23 90.9
MS.gene26610.t1 AT2G22200 46.789 109 53 2 11 115 21 128 9.35e-23 90.5
MS.gene26610.t1 AT3G15210 62.162 74 27 1 53 126 21 93 2.20e-22 88.6
MS.gene26610.t1 AT4G11140 65.000 60 20 1 55 114 85 143 2.58e-22 89.7
MS.gene26610.t1 AT1G28370 70.690 58 16 1 57 114 20 76 5.76e-22 86.3
MS.gene26610.t1 AT4G28140 62.121 66 24 1 52 117 138 202 6.13e-22 89.0
MS.gene26610.t1 AT3G20310 57.534 73 30 1 51 123 21 92 7.30e-22 87.8
MS.gene26610.t1 AT1G28370 70.690 58 16 1 57 114 58 114 8.18e-22 86.7
MS.gene26610.t1 AT5G44210 66.129 62 20 1 53 114 29 89 1.25e-21 86.3
MS.gene26610.t1 AT1G28360 53.947 76 34 1 46 121 1 75 1.29e-21 85.9
MS.gene26610.t1 AT2G46310 57.746 71 27 2 43 113 87 154 1.59e-21 87.8
MS.gene26610.t1 AT1G06160 70.968 62 18 0 55 116 80 141 1.83e-21 86.7
MS.gene26610.t1 AT1G50640 62.121 66 24 1 51 116 22 86 2.38e-21 85.9
MS.gene26610.t1 AT4G39780 48.387 93 47 1 23 115 59 150 2.87e-21 86.7
MS.gene26610.t1 AT1G22190 59.722 72 26 2 43 114 71 139 7.49e-21 85.5
MS.gene26610.t1 AT1G22985 48.889 90 42 2 51 136 69 158 1.08e-20 82.8
MS.gene26610.t1 AT4G23750 58.462 65 26 1 49 113 114 177 1.46e-20 85.9
MS.gene26610.t1 AT4G23750 58.462 65 26 1 49 113 114 177 1.46e-20 85.9
MS.gene26610.t1 AT1G36060 56.410 78 30 2 37 114 126 199 2.14e-20 85.1
MS.gene26610.t1 AT2G20880 63.492 63 22 1 55 117 185 246 2.29e-20 85.1
MS.gene26610.t1 AT1G78080 66.667 60 19 1 55 114 150 208 5.20e-20 84.3
MS.gene26610.t1 AT4G13620 62.500 64 23 1 51 114 226 288 5.75e-20 84.7
MS.gene26610.t1 AT5G65130 65.000 60 20 1 55 114 109 167 6.77e-20 83.2
MS.gene26610.t1 AT5G65130 65.000 60 20 1 55 114 111 169 7.18e-20 83.2
MS.gene26610.t1 AT5G61590 64.516 62 22 0 55 116 105 166 7.83e-20 81.6
MS.gene26610.t1 AT3G57600 62.712 59 21 1 57 115 28 85 8.96e-20 82.8
MS.gene26610.t1 AT5G13910 53.571 84 31 3 49 125 6 88 1.71e-19 80.9
MS.gene26610.t1 AT5G07310 49.505 101 45 2 14 114 54 148 2.22e-19 81.6
MS.gene26610.t1 AT1G24590 71.186 59 12 2 57 113 58 113 2.46e-19 82.0
MS.gene26610.t1 AT1G12980 66.102 59 19 1 57 115 57 114 2.90e-19 82.0
MS.gene26610.t1 AT5G50080 57.831 83 34 1 34 116 54 135 4.69e-19 79.7
MS.gene26610.t1 AT5G50080 57.831 83 34 1 34 116 63 144 5.79e-19 79.7
MS.gene26610.t1 AT5G18560 57.576 66 27 1 48 113 46 110 1.01e-18 80.9
MS.gene26610.t1 AT3G11020 58.333 72 27 2 56 127 77 145 1.02e-18 80.5
MS.gene26610.t1 AT1G28160 50.000 88 42 2 52 138 34 120 1.04e-18 79.3
MS.gene26610.t1 AT1G71450 51.351 74 34 2 57 130 24 95 2.37e-18 77.0
MS.gene26610.t1 AT5G05410 56.944 72 28 2 56 127 78 146 2.58e-18 79.3
MS.gene26610.t1 AT5G25810 44.000 100 46 4 41 136 16 109 3.12e-18 77.8
MS.gene26610.t1 AT5G05410 56.944 72 28 2 56 127 78 146 3.16e-18 79.3
MS.gene26610.t1 AT4G06746 42.857 84 47 1 55 138 34 116 4.63e-18 75.5
MS.gene26610.t1 AT4G31060 54.688 64 28 1 53 116 23 85 5.96e-18 76.3
MS.gene26610.t1 AT1G43160 67.188 64 20 1 53 116 57 119 7.32e-18 76.3
MS.gene26610.t1 AT3G50260 42.697 89 44 2 50 138 14 95 7.37e-18 75.1
MS.gene26610.t1 AT2G35700 56.452 62 26 1 53 114 41 101 1.09e-17 75.9
MS.gene26610.t1 AT1G75490 49.315 73 36 1 57 129 42 113 1.14e-17 75.9
MS.gene26610.t1 AT1G71130 55.556 72 26 2 46 113 70 139 1.26e-17 74.7
MS.gene26610.t1 AT4G34410 64.179 67 22 2 56 121 135 200 1.34e-17 76.6
MS.gene26610.t1 AT4G16750 51.471 68 32 1 47 114 30 96 1.92e-17 74.7
MS.gene26610.t1 AT4G32800 49.275 69 34 1 47 115 9 76 3.36e-17 75.1
MS.gene26610.t1 AT5G19790 52.564 78 35 2 47 124 13 88 3.36e-17 75.5
MS.gene26610.t1 AT1G01250 42.169 83 47 1 49 131 37 118 3.67e-17 74.3
MS.gene26610.t1 AT1G15360 55.556 63 27 1 52 114 2 63 8.75e-17 73.6
MS.gene26610.t1 AT1G15360 55.556 63 27 1 52 114 2 63 8.75e-17 73.6
MS.gene26610.t1 AT2G25820 55.172 58 25 1 57 114 26 82 1.07e-16 73.6
MS.gene26610.t1 AT1G12890 48.052 77 39 1 37 113 1 76 1.43e-16 73.2
MS.gene26610.t1 AT4G36900 50.794 63 30 1 53 115 26 87 1.45e-16 72.8
MS.gene26610.t1 AT5G64750 70.588 51 14 1 64 114 192 241 1.48e-16 75.1
MS.gene26610.t1 AT2G23340 42.353 85 47 2 55 138 26 109 1.68e-16 72.0
MS.gene26610.t1 AT3G16280 48.000 75 38 1 57 131 61 134 1.83e-16 73.2
MS.gene26610.t1 AT3G16280 48.000 75 38 1 57 131 79 152 2.13e-16 73.6
MS.gene26610.t1 AT5G11590 45.570 79 42 1 53 131 47 124 2.90e-16 72.8
MS.gene26610.t1 AT3G60490 37.624 101 57 2 36 131 45 144 3.48e-16 72.8
MS.gene26610.t1 AT2G44940 53.226 62 28 1 53 114 96 156 4.27e-16 73.2
MS.gene26610.t1 AT1G53910 66.197 71 22 2 47 116 112 181 4.29e-16 73.6
MS.gene26610.t1 AT1G53910 66.197 71 22 2 47 116 114 183 4.33e-16 73.6
MS.gene26610.t1 AT1G53910 66.197 71 22 2 47 116 114 183 4.33e-16 73.6
MS.gene26610.t1 AT2G40340 56.667 60 25 1 56 115 13 71 4.91e-16 72.8
MS.gene26610.t1 AT2G40340 56.667 60 25 1 56 115 13 71 4.91e-16 72.8
MS.gene26610.t1 AT2G40340 56.667 60 25 1 56 115 13 71 4.91e-16 72.8
MS.gene26610.t1 AT2G40340 47.500 80 39 2 56 133 71 149 7.51e-16 72.4
MS.gene26610.t1 AT2G40340 52.055 73 32 2 56 126 71 142 7.59e-16 72.8
MS.gene26610.t1 AT2G40340 47.500 80 39 2 56 133 78 156 8.20e-16 72.8
MS.gene26610.t1 AT1G46768 52.459 61 28 1 54 114 28 87 9.25e-16 69.7
MS.gene26610.t1 AT1G46768 52.459 61 28 1 54 114 28 87 9.25e-16 69.7
MS.gene26610.t1 AT1G46768 42.353 85 46 2 32 114 4 87 9.38e-16 69.3
MS.gene26610.t1 AT5G25190 49.333 75 35 2 54 128 5 76 9.79e-16 70.5
MS.gene26610.t1 AT5G18450 55.932 59 25 1 57 115 34 91 1.29e-15 72.0
MS.gene26610.t1 AT5G67190 50.000 62 30 1 53 114 17 77 1.65e-15 69.7
MS.gene26610.t1 AT5G25390 46.914 81 39 2 52 129 2 81 3.23e-15 68.9
MS.gene26610.t1 AT3G14230 61.842 76 27 2 47 121 112 186 6.93e-15 70.5
MS.gene26610.t1 AT3G14230 61.842 76 27 2 47 121 113 187 7.09e-15 70.1
MS.gene26610.t1 AT3G14230 61.842 76 27 2 47 121 117 191 7.61e-15 70.1
MS.gene26610.t1 AT5G25390 45.679 81 37 2 52 129 2 78 9.85e-15 67.8
MS.gene26610.t1 AT2G40350 52.542 59 27 1 56 114 73 130 2.03e-14 66.6
MS.gene26610.t1 AT1G74930 40.000 80 47 1 37 116 1 79 2.05e-14 67.0
MS.gene26610.t1 AT2G40350 52.542 59 27 1 56 114 66 123 2.37e-14 66.2
MS.gene26610.t1 AT1G21910 51.724 58 27 1 57 114 50 106 3.65e-14 67.0
MS.gene26610.t1 AT2G36450 47.945 73 36 2 57 128 15 86 4.24e-14 66.2
MS.gene26610.t1 AT1G22810 41.758 91 44 3 41 129 4 87 9.53e-14 64.3
MS.gene26610.t1 AT4G25480 47.826 69 35 1 45 113 39 106 9.56e-14 65.9
MS.gene26610.t1 AT4G25490 47.826 69 35 1 45 113 36 103 1.12e-13 65.5
MS.gene26610.t1 AT1G53170 60.606 66 25 1 48 113 22 86 1.18e-13 65.1
MS.gene26610.t1 AT1G19210 42.466 73 37 2 46 116 1 70 1.26e-13 64.7
MS.gene26610.t1 AT4G25470 47.826 69 35 1 45 113 39 106 1.51e-13 65.1
MS.gene26610.t1 AT1G68840 47.222 72 34 2 43 113 50 118 5.01e-13 65.1
MS.gene26610.t1 AT1G68840 47.222 72 34 2 43 113 50 118 5.01e-13 65.1
MS.gene26610.t1 AT5G21960 51.724 58 27 1 57 114 7 63 5.12e-13 63.9
MS.gene26610.t1 AT5G51990 44.928 69 37 1 45 113 42 109 1.79e-12 62.4
MS.gene26610.t1 AT1G77200 52.459 61 28 1 55 115 41 100 2.27e-12 62.4
MS.gene26610.t1 AT1G64380 58.750 80 30 2 51 128 130 208 9.32e-12 61.2
MS.gene26610.t1 AT2G38340 53.521 71 26 2 57 120 70 140 1.11e-11 60.5
MS.gene26610.t1 AT1G25560 44.444 72 36 2 43 113 57 125 1.14e-11 61.2
MS.gene26610.t1 AT3G25730 41.176 85 42 2 34 113 34 115 1.31e-11 60.8
MS.gene26610.t1 AT1G49120 61.364 44 16 1 57 100 87 129 3.58e-11 59.7
MS.gene26610.t1 AT1G63030 36.471 85 53 1 29 113 2 85 7.33e-11 57.4
MS.gene26610.t1 AT1G63030 36.471 85 53 1 29 113 2 85 7.33e-11 57.4

Find 26 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTAGCTTCCTTAAGAATT+TGG 0.176380 4.1:-22357141 None:intergenic
TGAAAATGATTCACAAGATA+TGG 0.288759 4.1:+22357111 MS.gene26610:CDS
CCTTGAACTCAAATCACTCT+TGG 0.339899 4.1:-22357449 None:intergenic
TCAAGGAAAATAAACAAATA+AGG 0.346845 4.1:+22357466 MS.gene26610:CDS
ATTCGTGACTCGAAGCAAAA+TGG 0.384421 4.1:+22357283 MS.gene26610:CDS
GGTTATATACCAAATTCTTA+AGG 0.414912 4.1:+22357132 MS.gene26610:CDS
CCAAGAGTGATTTGAGTTCA+AGG 0.429785 4.1:+22357449 MS.gene26610:CDS
GTGCAAGAGAGGCATCAAAA+TGG 0.442976 4.1:+22357181 MS.gene26610:CDS
AGCAAAATGGAGCTAGGGTA+TGG 0.479507 4.1:+22357296 MS.gene26610:CDS
TGAGATTAAATTTAAAGCCA+TGG 0.483707 4.1:-22357068 None:intergenic
ATAAAGCTGCTTTCAGAATG+AGG 0.517117 4.1:+22357362 MS.gene26610:CDS
ACTCGAAGCAAAATGGAGCT+AGG 0.518024 4.1:+22357290 MS.gene26610:CDS
AGGCGTAAGGCATCGACCGT+GGG 0.533824 4.1:+22357243 MS.gene26610:CDS
TTTCAGAATGAGGGGTGCTA+AGG 0.550876 4.1:+22357372 MS.gene26610:CDS
TACATTTCAAACAGCTGAAG+AGG 0.558185 4.1:+22357324 MS.gene26610:CDS
TAAAGCTGCTTTCAGAATGA+GGG 0.568686 4.1:+22357363 MS.gene26610:CDS
CTCGAAGCAAAATGGAGCTA+GGG 0.572765 4.1:+22357291 MS.gene26610:CDS
GAGGCGTAAGGCATCGACCG+TGG 0.590869 4.1:+22357242 MS.gene26610:CDS
GCAACACAATGGTGCAAGAG+AGG 0.592167 4.1:+22357170 MS.gene26610:CDS
AATGGAGCTAGGGTATGGCT+TGG 0.594507 4.1:+22357301 MS.gene26610:CDS
AGAAGAACTACAGAGGCGTA+AGG 0.610848 4.1:+22357230 MS.gene26610:CDS
GGCGTAAGGCATCGACCGTG+GGG 0.632903 4.1:+22357244 MS.gene26610:CDS
AAAGCTGCTTTCAGAATGAG+GGG 0.658658 4.1:+22357364 MS.gene26610:CDS
GCGTAAGGCATCGACCGTGG+GGG 0.697991 4.1:+22357245 MS.gene26610:CDS
ATCATGTGGGAAATTCAACA+AGG 0.698701 4.1:-22357395 None:intergenic
TAATGAACTTAGCAACACAA+TGG 0.708706 4.1:+22357159 MS.gene26610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTGAATCATTTTCATTAA+GGG - chr4.1:22357107-22357126 None:intergenic 20.0%
! ATTAAAAAGAAGAACTACAG+AGG + chr4.1:22357223-22357242 MS.gene26610:CDS 25.0%
! GGTTATATACCAAATTCTTA+AGG + chr4.1:22357132-22357151 MS.gene26610:CDS 25.0%
! TGAAAATGATTCACAAGATA+TGG + chr4.1:22357111-22357130 MS.gene26610:CDS 25.0%
!! CTTGTGAATCATTTTCATTA+AGG - chr4.1:22357108-22357127 None:intergenic 25.0%
!! TCTGTAGTTCTTCTTTTTAA+TGG - chr4.1:22357224-22357243 None:intergenic 25.0%
!! TGTGAATCATTTTCATTAAG+GGG - chr4.1:22357106-22357125 None:intergenic 25.0%
ATAGAAGCAGAAAAATCATG+TGG - chr4.1:22357412-22357431 None:intergenic 30.0%
TAATGAACTTAGCAACACAA+TGG + chr4.1:22357159-22357178 MS.gene26610:CDS 30.0%
TAGAAGCAGAAAAATCATGT+GGG - chr4.1:22357411-22357430 None:intergenic 30.0%
! CATTAGCTTCCTTAAGAATT+TGG - chr4.1:22357144-22357163 None:intergenic 30.0%
ATCATGTGGGAAATTCAACA+AGG - chr4.1:22357398-22357417 None:intergenic 35.0%
TACATTTCAAACAGCTGAAG+AGG + chr4.1:22357324-22357343 MS.gene26610:CDS 35.0%
! ATAAAGCTGCTTTCAGAATG+AGG + chr4.1:22357362-22357381 MS.gene26610:CDS 35.0%
! TAAAGCTGCTTTCAGAATGA+GGG + chr4.1:22357363-22357382 MS.gene26610:CDS 35.0%
ATTCGTGACTCGAAGCAAAA+TGG + chr4.1:22357283-22357302 MS.gene26610:CDS 40.0%
CCTTGAACTCAAATCACTCT+TGG - chr4.1:22357452-22357471 None:intergenic 40.0%
! AAAGCTGCTTTCAGAATGAG+GGG + chr4.1:22357364-22357383 MS.gene26610:CDS 40.0%
! CCAAGAGTGATTTGAGTTCA+AGG + chr4.1:22357449-22357468 MS.gene26610:CDS 40.0%
ACTCGAAGCAAAATGGAGCT+AGG + chr4.1:22357290-22357309 MS.gene26610:CDS 45.0%
AGCAAAATGGAGCTAGGGTA+TGG + chr4.1:22357296-22357315 MS.gene26610:CDS 45.0%
CTCGAAGCAAAATGGAGCTA+GGG + chr4.1:22357291-22357310 MS.gene26610:CDS 45.0%
! AGAAGAACTACAGAGGCGTA+AGG + chr4.1:22357230-22357249 MS.gene26610:CDS 45.0%
!! GTGCAAGAGAGGCATCAAAA+TGG + chr4.1:22357181-22357200 MS.gene26610:CDS 45.0%
!! TTTCAGAATGAGGGGTGCTA+AGG + chr4.1:22357372-22357391 MS.gene26610:CDS 45.0%
AATGGAGCTAGGGTATGGCT+TGG + chr4.1:22357301-22357320 MS.gene26610:CDS 50.0%
GCAACACAATGGTGCAAGAG+AGG + chr4.1:22357170-22357189 MS.gene26610:CDS 50.0%
TCTGCTGCATATTTCCCCCA+CGG - chr4.1:22357262-22357281 None:intergenic 50.0%
!! AGGCGTAAGGCATCGACCGT+GGG + chr4.1:22357243-22357262 MS.gene26610:CDS 60.0%
!! GAGGCGTAAGGCATCGACCG+TGG + chr4.1:22357242-22357261 MS.gene26610:CDS 65.0%
!! GCGTAAGGCATCGACCGTGG+GGG + chr4.1:22357245-22357264 MS.gene26610:CDS 65.0%
!! GGCGTAAGGCATCGACCGTG+GGG + chr4.1:22357244-22357263 MS.gene26610:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 22357070 22357486 22357070 ID=MS.gene26610
chr4.1 mRNA 22357070 22357486 22357070 ID=MS.gene26610.t1;Parent=MS.gene26610
chr4.1 exon 22357070 22357486 22357070 ID=MS.gene26610.t1.exon1;Parent=MS.gene26610.t1
chr4.1 CDS 22357070 22357486 22357070 ID=cds.MS.gene26610.t1;Parent=MS.gene26610.t1
Gene Sequence

>MS.gene26610

ATGGCTTTAAATTTAATCTCACAAAGTGAGTTACCCCTTAATGAAAATGATTCACAAGATATGGTTATATACCAAATTCTTAAGGAAGCTAATGAACTTAGCAACACAATGGTGCAAGAGAGGCATCAAAATGGCTTAGAACAGAGCAAGACCATTAAAAAGAAGAACTACAGAGGCGTAAGGCATCGACCGTGGGGGAAATATGCAGCAGAGATTCGTGACTCGAAGCAAAATGGAGCTAGGGTATGGCTTGGTACATTTCAAACAGCTGAAGAGGCTGCAGTTGCTTATGATAAAGCTGCTTTCAGAATGAGGGGTGCTAAGGCCTTGTTGAATTTCCCACATGATTTTTCTGCTTCTATACAATTGACTTCAACGTCCAAGAGTGATTTGAGTTCAAGGAAAATAAACAAATAA
Protein sequence

>MS.gene26610.t1

MALNLISQSELPLNENDSQDMVIYQILKEANELSNTMVQERHQNGLEQSKTIKKKNYRGVRHRPWGKYAAEIRDSKQNGARVWLGTFQTAEEAAVAYDKAAFRMRGAKALLNFPHDFSASIQLTSTSKSDLSSRKINK