Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26877.t1 | XP_018459315.1 | 46.8 | 340 | 156 | 6 | 1 | 338 | 1 | 317 | 7.00E-66 | 261.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26877.t1 | A0A2N9I863 | 41.5 | 354 | 173 | 8 | 1 | 339 | 1 | 335 | 9.9e-62 | 246.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene26877 | 0.822919 | 1.83E-53 | -1.69E-46 |
MS.gene050226 | MS.gene26877 | 0.803597 | 3.23E-49 | -1.69E-46 |
MS.gene050227 | MS.gene26877 | 0.806453 | 8.16E-50 | -1.69E-46 |
MS.gene050228 | MS.gene26877 | 0.820555 | 6.45E-53 | -1.69E-46 |
MS.gene055701 | MS.gene26877 | 0.814553 | 1.45E-51 | -1.69E-46 |
MS.gene05761 | MS.gene26877 | 0.800181 | 1.63E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26877.t1 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 1 | 146 | 1 | 142 | 5.14e-31 | 115 |
MS.gene26877.t1 | MTR_4g037355 | 40.441 | 136 | 61 | 4 | 155 | 290 | 1 | 116 | 1.16e-21 | 89.7 |
MS.gene26877.t1 | MTR_5g061150 | 35.354 | 99 | 64 | 0 | 52 | 150 | 38 | 136 | 4.20e-18 | 80.1 |
MS.gene26877.t1 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 143 | 211 | 2 | 69 | 7.91e-18 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 61 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGATCAATGGAACAAATTA+AGG | 0.196151 | 1.4:-80109125 | MS.gene26877:CDS |
AGTCTTATTGCCCTCATTAA+TGG | 0.201947 | 1.4:-80109145 | MS.gene26877:CDS |
AAAGTTGTGGCGTTTATTTC+AGG | 0.203868 | 1.4:+80108829 | None:intergenic |
CAAAAGATCCCAAGATCTTA+TGG | 0.237847 | 1.4:-80109203 | MS.gene26877:CDS |
GATTCTTGAGGGAGAAGATT+TGG | 0.253340 | 1.4:-80109322 | MS.gene26877:CDS |
GACAAAATTAAGGCAAGATT+TGG | 0.257188 | 1.4:-80109180 | MS.gene26877:CDS |
CTCAATTAAGTTGTTGTTCC+AGG | 0.274617 | 1.4:+80109371 | None:intergenic |
CACGACCTCCACCACGAAAA+TGG | 0.277262 | 1.4:+80108713 | None:intergenic |
GATCTTATGGGACAAAATTA+AGG | 0.310971 | 1.4:-80109190 | MS.gene26877:CDS |
ATTTACTGAATACTCTGATT+TGG | 0.313227 | 1.4:-80108935 | MS.gene26877:CDS |
ATTCTTGAGGGAGAAGATTT+GGG | 0.333151 | 1.4:-80109321 | MS.gene26877:CDS |
AGACAGGTAGTGTCATTCTT+TGG | 0.342502 | 1.4:+80108457 | None:intergenic |
GGGAGATGTCCCAGAGGAAT+TGG | 0.345733 | 1.4:-80109301 | MS.gene26877:CDS |
GAAGAGGTTATATGAATTAC+AGG | 0.363099 | 1.4:-80108690 | MS.gene26877:CDS |
GATTTCTAGAGGGACCTTCC+TGG | 0.373636 | 1.4:+80108614 | None:intergenic |
CATAGCCACCACGTCCTCTT+TGG | 0.374275 | 1.4:+80108779 | None:intergenic |
CGTGGTGGCTATGCTCGTTT+TGG | 0.395091 | 1.4:-80108769 | MS.gene26877:CDS |
ACAAAATTAAGGCAAGATTT+GGG | 0.416566 | 1.4:-80109179 | MS.gene26877:CDS |
TATAACTGAAAAGGAAAAGT+TGG | 0.422757 | 1.4:-80109022 | MS.gene26877:CDS |
TGCCCTCATTAATGGATCAA+TGG | 0.432677 | 1.4:-80109137 | MS.gene26877:CDS |
CGTGGTGGAGGTCGTGGAAG+AGG | 0.449888 | 1.4:-80108706 | MS.gene26877:CDS |
TCCTGCATGCTTTAGCCCAA+TGG | 0.457473 | 1.4:+80108557 | None:intergenic |
AAAAGATCCCAAGATCTTAT+GGG | 0.458748 | 1.4:-80109202 | MS.gene26877:CDS |
AACCATCAGTTGCGTCCTAC+AGG | 0.459311 | 1.4:-80108865 | MS.gene26877:CDS |
TGGCAAAACTATAACTGAAA+AGG | 0.467052 | 1.4:-80109031 | MS.gene26877:CDS |
ATCTGTGGATGGAAAGGAAA+GGG | 0.491819 | 1.4:-80108503 | MS.gene26877:CDS |
ATCAAGCACCACATTGATGA+TGG | 0.492315 | 1.4:-80109249 | MS.gene26877:CDS |
TGTTATAGATGCGGAAAGAA+AGG | 0.495634 | 1.4:-80108580 | MS.gene26877:CDS |
CTGGCGACAACTACATAACC+TGG | 0.502097 | 1.4:-80109389 | MS.gene26877:CDS |
GTTCCATTGATCCATTAATG+AGG | 0.509644 | 1.4:+80109134 | None:intergenic |
ATGCGGAAAGAAAGGCCATT+GGG | 0.516896 | 1.4:-80108572 | MS.gene26877:CDS |
TTTGATTGGTCATATTTGAG+AGG | 0.522357 | 1.4:+80108667 | None:intergenic |
CAAAGAATCTGTGGATGGAA+AGG | 0.532926 | 1.4:-80108509 | MS.gene26877:CDS |
TTCCATTGATCCATTAATGA+GGG | 0.533283 | 1.4:+80109135 | None:intergenic |
CGTGGACGAGGTAGAAATCA+TGG | 0.535808 | 1.4:-80108742 | MS.gene26877:CDS |
GGACTCGATAAGATTCTTGA+GGG | 0.539399 | 1.4:-80109333 | MS.gene26877:CDS |
GCCATTGGGCTAAAGCATGC+AGG | 0.539769 | 1.4:-80108558 | MS.gene26877:CDS |
CCCTCTAGAAATCATGATGA+TGG | 0.541875 | 1.4:-80108604 | MS.gene26877:CDS |
TTCCTGTAGGACGCAACTGA+TGG | 0.562606 | 1.4:+80108863 | None:intergenic |
AAAATCAGCAGCCTCAAGAC+AGG | 0.562896 | 1.4:+80108441 | None:intergenic |
AATTGAGTATCTTGCATGTG+AGG | 0.565013 | 1.4:-80109355 | MS.gene26877:CDS |
ATTGAGTATCTTGCATGTGA+GGG | 0.575966 | 1.4:-80109354 | MS.gene26877:CDS |
TTTGGTTGCAGCCCTTCTAG+TGG | 0.582793 | 1.4:-80108917 | MS.gene26877:CDS |
GATGCGGAAAGAAAGGCCAT+TGG | 0.583841 | 1.4:-80108573 | MS.gene26877:CDS |
TTGTGCAATAATTTGATGCA+TGG | 0.588693 | 1.4:+80109065 | None:intergenic |
TAAAAGATACAAAGAATCTG+TGG | 0.594054 | 1.4:-80108518 | MS.gene26877:CDS |
AGATACAAAGAATCTGTGGA+TGG | 0.602731 | 1.4:-80108514 | MS.gene26877:CDS |
GGGACTCGATAAGATTCTTG+AGG | 0.606176 | 1.4:-80109334 | MS.gene26877:CDS |
ACGCCCTTGATTAAAAGTTG+TGG | 0.608515 | 1.4:+80108816 | None:intergenic |
GCAATATCACTTGAGATGCA+TGG | 0.608661 | 1.4:+80108980 | None:intergenic |
TATAATCGCCAAAGAGGACG+TGG | 0.608957 | 1.4:-80108787 | MS.gene26877:CDS |
ACCATCATCATGATTTCTAG+AGG | 0.616492 | 1.4:+80108603 | None:intergenic |
GGATACGACATTGTTCCTGT+AGG | 0.627452 | 1.4:+80108850 | None:intergenic |
GGTGGTTATAATCGCCAAAG+AGG | 0.642086 | 1.4:-80108793 | MS.gene26877:CDS |
CCATCATCATGATTTCTAGA+GGG | 0.647682 | 1.4:+80108604 | None:intergenic |
GAATGACACTACCTGTCTTG+AGG | 0.649563 | 1.4:-80108452 | MS.gene26877:CDS |
AATCTGTGGATGGAAAGGAA+AGG | 0.653361 | 1.4:-80108504 | MS.gene26877:CDS |
GATGATGGTTGTTATAGATG+CGG | 0.696569 | 1.4:-80108589 | MS.gene26877:CDS |
AATCGCCAAAGAGGACGTGG+TGG | 0.698905 | 1.4:-80108784 | MS.gene26877:CDS |
TTTGTAATCCATCATCAATG+TGG | 0.715751 | 1.4:+80109241 | None:intergenic |
AGATTTGGGAGATGTCCCAG+AGG | 0.741186 | 1.4:-80109307 | MS.gene26877:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCAAAATTTTAAGCATAAC+TGG | - | chr1.4:80108435-80108454 | MS.gene26877:CDS | 20.0% |
! | ACAAAATTAAGGCAAGATTT+GGG | - | chr1.4:80108664-80108683 | MS.gene26877:CDS | 25.0% |
! | ATTTACTGAATACTCTGATT+TGG | - | chr1.4:80108908-80108927 | MS.gene26877:CDS | 25.0% |
! | CAATCAAACAAAAATCATCA+GGG | - | chr1.4:80109191-80109210 | MS.gene26877:CDS | 25.0% |
! | TAAAAGATACAAAGAATCTG+TGG | - | chr1.4:80109325-80109344 | MS.gene26877:CDS | 25.0% |
! | TATAACTGAAAAGGAAAAGT+TGG | - | chr1.4:80108821-80108840 | MS.gene26877:CDS | 25.0% |
!! | ATTGCACAATTAGAATTTTG+TGG | - | chr1.4:80108792-80108811 | MS.gene26877:CDS | 25.0% |
!! | TATCTTTTACATAGATACTC+TGG | + | chr1.4:80109314-80109333 | None:intergenic | 25.0% |
!!! | CAACAACAGTTTTATAATCT+TGG | + | chr1.4:80108746-80108765 | None:intergenic | 25.0% |
!!! | TGTTGAAGGAGATTTTAATA+TGG | - | chr1.4:80109424-80109443 | MS.gene26877:CDS | 25.0% |
AAAAGATCCCAAGATCTTAT+GGG | - | chr1.4:80108641-80108660 | MS.gene26877:CDS | 30.0% | |
AACAAAAATCATCAGGGTAA+AGG | - | chr1.4:80109197-80109216 | MS.gene26877:CDS | 30.0% | |
CCAATCAAACAAAAATCATC+AGG | - | chr1.4:80109190-80109209 | MS.gene26877:CDS | 30.0% | |
GAAGAGGTTATATGAATTAC+AGG | - | chr1.4:80109153-80109172 | MS.gene26877:CDS | 30.0% | |
GACAAAATTAAGGCAAGATT+TGG | - | chr1.4:80108663-80108682 | MS.gene26877:CDS | 30.0% | |
GATCTTATGGGACAAAATTA+AGG | - | chr1.4:80108653-80108672 | MS.gene26877:CDS | 30.0% | |
TGGATCAATGGAACAAATTA+AGG | - | chr1.4:80108718-80108737 | MS.gene26877:CDS | 30.0% | |
TGGCAAAACTATAACTGAAA+AGG | - | chr1.4:80108812-80108831 | MS.gene26877:CDS | 30.0% | |
TTCCATTGATCCATTAATGA+GGG | + | chr1.4:80108711-80108730 | None:intergenic | 30.0% | |
TTGTGCAATAATTTGATGCA+TGG | + | chr1.4:80108781-80108800 | None:intergenic | 30.0% | |
TTTGTAATCCATCATCAATG+TGG | + | chr1.4:80108605-80108624 | None:intergenic | 30.0% | |
! | AATTTTGTCCCATAAGATCT+TGG | + | chr1.4:80108652-80108671 | None:intergenic | 30.0% |
! | ATTTTGTCCCATAAGATCTT+GGG | + | chr1.4:80108651-80108670 | None:intergenic | 30.0% |
! | TTTGATTGGTCATATTTGAG+AGG | + | chr1.4:80109179-80109198 | None:intergenic | 30.0% |
!! | CCTGATGATTTTTGTTTGAT+TGG | + | chr1.4:80109193-80109212 | None:intergenic | 30.0% |
AAAGGTAAAAACATCCAGGA+AGG | - | chr1.4:80109215-80109234 | MS.gene26877:CDS | 35.0% | |
AAAGTTGTGGCGTTTATTTC+AGG | + | chr1.4:80109017-80109036 | None:intergenic | 35.0% | |
AATTGAGTATCTTGCATGTG+AGG | - | chr1.4:80108488-80108507 | MS.gene26877:CDS | 35.0% | |
AGATACAAAGAATCTGTGGA+TGG | - | chr1.4:80109329-80109348 | MS.gene26877:CDS | 35.0% | |
ATTCTTGAGGGAGAAGATTT+GGG | - | chr1.4:80108522-80108541 | MS.gene26877:CDS | 35.0% | |
ATTGAGTATCTTGCATGTGA+GGG | - | chr1.4:80108489-80108508 | MS.gene26877:CDS | 35.0% | |
CAAAAGATCCCAAGATCTTA+TGG | - | chr1.4:80108640-80108659 | MS.gene26877:CDS | 35.0% | |
GTTCCATTGATCCATTAATG+AGG | + | chr1.4:80108712-80108731 | None:intergenic | 35.0% | |
TGTTATAGATGCGGAAAGAA+AGG | - | chr1.4:80109263-80109282 | MS.gene26877:CDS | 35.0% | |
! | AACGCCACAACTTTTAATCA+AGG | - | chr1.4:80109023-80109042 | MS.gene26877:CDS | 35.0% |
! | ACCATCATCATGATTTCTAG+AGG | + | chr1.4:80109243-80109262 | None:intergenic | 35.0% |
! | ACGCCACAACTTTTAATCAA+GGG | - | chr1.4:80109024-80109043 | MS.gene26877:CDS | 35.0% |
! | ATTTTGTTCAGCCACTAGAA+GGG | + | chr1.4:80108940-80108959 | None:intergenic | 35.0% |
! | CCATCATCATGATTTCTAGA+GGG | + | chr1.4:80109242-80109261 | None:intergenic | 35.0% |
! | CTCAATTAAGTTGTTGTTCC+AGG | + | chr1.4:80108475-80108494 | None:intergenic | 35.0% |
! | GATGATGGTTGTTATAGATG+CGG | - | chr1.4:80109254-80109273 | MS.gene26877:CDS | 35.0% |
! | TATTTTGTTCAGCCACTAGA+AGG | + | chr1.4:80108941-80108960 | None:intergenic | 35.0% |
! | TTTTCTTTGCCAATTCCTCT+GGG | + | chr1.4:80108554-80108573 | None:intergenic | 35.0% |
! | TTTTTCTTTGCCAATTCCTC+TGG | + | chr1.4:80108555-80108574 | None:intergenic | 35.0% |
!! | AGTCTTATTGCCCTCATTAA+TGG | - | chr1.4:80108698-80108717 | MS.gene26877:CDS | 35.0% |
AATCTGTGGATGGAAAGGAA+AGG | - | chr1.4:80109339-80109358 | MS.gene26877:CDS | 40.0% | |
ACGCCCTTGATTAAAAGTTG+TGG | + | chr1.4:80109030-80109049 | None:intergenic | 40.0% | |
ATCAAGCACCACATTGATGA+TGG | - | chr1.4:80108594-80108613 | MS.gene26877:CDS | 40.0% | |
ATCTGTGGATGGAAAGGAAA+GGG | - | chr1.4:80109340-80109359 | MS.gene26877:CDS | 40.0% | |
CAAAGAATCTGTGGATGGAA+AGG | - | chr1.4:80109334-80109353 | MS.gene26877:CDS | 40.0% | |
GATTCTTGAGGGAGAAGATT+TGG | - | chr1.4:80108521-80108540 | MS.gene26877:CDS | 40.0% | |
GCAATATCACTTGAGATGCA+TGG | + | chr1.4:80108866-80108885 | None:intergenic | 40.0% | |
GGACTCGATAAGATTCTTGA+GGG | - | chr1.4:80108510-80108529 | MS.gene26877:CDS | 40.0% | |
GGGTAAAGGTAAAAACATCC+AGG | - | chr1.4:80109211-80109230 | MS.gene26877:CDS | 40.0% | |
! | ACAACTTTTAATCAAGGGCG+TGG | - | chr1.4:80109029-80109048 | MS.gene26877:CDS | 40.0% |
! | AGACAGGTAGTGTCATTCTT+TGG | + | chr1.4:80109389-80109408 | None:intergenic | 40.0% |
! | CCCTCTAGAAATCATGATGA+TGG | - | chr1.4:80109239-80109258 | MS.gene26877:CDS | 40.0% |
! | TGCCCTCATTAATGGATCAA+TGG | - | chr1.4:80108706-80108725 | MS.gene26877:CDS | 40.0% |
AAAATCAGCAGCCTCAAGAC+AGG | + | chr1.4:80109405-80109424 | None:intergenic | 45.0% | |
ATGCGGAAAGAAAGGCCATT+GGG | - | chr1.4:80109271-80109290 | MS.gene26877:CDS | 45.0% | |
GAATGACACTACCTGTCTTG+AGG | - | chr1.4:80109391-80109410 | MS.gene26877:CDS | 45.0% | |
GGATACGACATTGTTCCTGT+AGG | + | chr1.4:80108996-80109015 | None:intergenic | 45.0% | |
GGGACTCGATAAGATTCTTG+AGG | - | chr1.4:80108509-80108528 | MS.gene26877:CDS | 45.0% | |
GGTGGTTATAATCGCCAAAG+AGG | - | chr1.4:80109050-80109069 | MS.gene26877:CDS | 45.0% | |
TATAATCGCCAAAGAGGACG+TGG | - | chr1.4:80109056-80109075 | MS.gene26877:CDS | 45.0% | |
! | CATGGTCGAAACCATTTTCG+TGG | - | chr1.4:80109119-80109138 | MS.gene26877:CDS | 45.0% |
!! | ACTTTTAATCAAGGGCGTGG+TGG | - | chr1.4:80109032-80109051 | MS.gene26877:CDS | 45.0% |
!!! | GAGGCTGCTGATTTTGTTGA+AGG | - | chr1.4:80109410-80109429 | MS.gene26877:CDS | 45.0% |
AACCATCAGTTGCGTCCTAC+AGG | - | chr1.4:80108978-80108997 | MS.gene26877:CDS | 50.0% | |
AGATTTGGGAGATGTCCCAG+AGG | - | chr1.4:80108536-80108555 | MS.gene26877:CDS | 50.0% | |
CGTGGACGAGGTAGAAATCA+TGG | - | chr1.4:80109101-80109120 | MS.gene26877:CDS | 50.0% | |
CTGGCGACAACTACATAACC+TGG | - | chr1.4:80108454-80108473 | MS.gene26877:CDS | 50.0% | |
GATGCGGAAAGAAAGGCCAT+TGG | - | chr1.4:80109270-80109289 | MS.gene26877:CDS | 50.0% | |
TCCTGCATGCTTTAGCCCAA+TGG | + | chr1.4:80109289-80109308 | None:intergenic | 50.0% | |
TTCCTGTAGGACGCAACTGA+TGG | + | chr1.4:80108983-80109002 | None:intergenic | 50.0% | |
TTTGGTTGCAGCCCTTCTAG+TGG | - | chr1.4:80108926-80108945 | MS.gene26877:CDS | 50.0% | |
! | CGAAACCATTTTCGTGGTGG+AGG | - | chr1.4:80109125-80109144 | MS.gene26877:CDS | 50.0% |
! | GATTTCTAGAGGGACCTTCC+TGG | + | chr1.4:80109232-80109251 | None:intergenic | 50.0% |
! | GGTCGAAACCATTTTCGTGG+TGG | - | chr1.4:80109122-80109141 | MS.gene26877:CDS | 50.0% |
!! | TATGCTCGTTTTGGTGGTCG+TGG | - | chr1.4:80109083-80109102 | MS.gene26877:CDS | 50.0% |
AATCGCCAAAGAGGACGTGG+TGG | - | chr1.4:80109059-80109078 | MS.gene26877:CDS | 55.0% | |
CACGACCTCCACCACGAAAA+TGG | + | chr1.4:80109133-80109152 | None:intergenic | 55.0% | |
CATAGCCACCACGTCCTCTT+TGG | + | chr1.4:80109067-80109086 | None:intergenic | 55.0% | |
GCCATTGGGCTAAAGCATGC+AGG | - | chr1.4:80109285-80109304 | MS.gene26877:CDS | 55.0% | |
GGGAGATGTCCCAGAGGAAT+TGG | - | chr1.4:80108542-80108561 | MS.gene26877:CDS | 55.0% | |
! | CGTGGTGGCTATGCTCGTTT+TGG | - | chr1.4:80109074-80109093 | MS.gene26877:CDS | 55.0% |
! | GGTGGCTATGCTCGTTTTGG+TGG | - | chr1.4:80109077-80109096 | MS.gene26877:CDS | 55.0% |
!! | CATTTTCGTGGTGGAGGTCG+TGG | - | chr1.4:80109131-80109150 | MS.gene26877:CDS | 55.0% |
!! | CGTTTTGGTGGTCGTGGACG+AGG | - | chr1.4:80109089-80109108 | MS.gene26877:CDS | 60.0% |
! | CGTGGTGGAGGTCGTGGAAG+AGG | - | chr1.4:80109137-80109156 | MS.gene26877:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 80108414 | 80109451 | 80108414 | ID=MS.gene26877 |
chr1.4 | mRNA | 80108414 | 80109451 | 80108414 | ID=MS.gene26877.t1;Parent=MS.gene26877 |
chr1.4 | exon | 80108414 | 80109451 | 80108414 | ID=MS.gene26877.t1.exon1;Parent=MS.gene26877.t1 |
chr1.4 | CDS | 80108414 | 80109451 | 80108414 | ID=cds.MS.gene26877.t1;Parent=MS.gene26877.t1 |
Gene Sequence |
Protein sequence |