Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26894.t1 | RHN82025.1 | 93.6 | 280 | 10 | 3 | 1 | 277 | 20 | 294 | 2.90E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26894.t1 | Q43072 | 75.5 | 269 | 58 | 5 | 16 | 277 | 14 | 281 | 2.5e-107 | 389.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26894.t1 | A0A072VQG6 | 93.6 | 280 | 10 | 3 | 1 | 277 | 1 | 275 | 2.1e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26894 | MS.gene012540 | PPI |
| MS.gene58078 | MS.gene26894 | PPI |
| MS.gene26894 | MS.gene035606 | PPI |
| MS.gene047205 | MS.gene26894 | PPI |
| MS.gene26894 | MS.gene002039 | PPI |
| MS.gene26894 | MS.gene00613 | PPI |
| MS.gene26894 | MS.gene072063 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26894.t1 | MTR_1g103820 | 93.571 | 280 | 10 | 3 | 1 | 277 | 1 | 275 | 0.0 | 516 |
| MS.gene26894.t1 | MTR_8g045710 | 81.356 | 59 | 8 | 1 | 146 | 201 | 8 | 66 | 2.57e-25 | 98.6 |
| MS.gene26894.t1 | MTR_1g071390 | 42.373 | 118 | 16 | 2 | 100 | 217 | 1 | 66 | 2.22e-18 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26894.t1 | AT4G14910 | 87.923 | 207 | 24 | 1 | 71 | 277 | 67 | 272 | 1.76e-130 | 371 |
| MS.gene26894.t1 | AT3G22425 | 89.899 | 198 | 20 | 0 | 80 | 277 | 73 | 270 | 2.35e-130 | 370 |
| MS.gene26894.t1 | AT4G14910 | 84.878 | 205 | 30 | 1 | 71 | 275 | 67 | 270 | 1.33e-124 | 356 |
| MS.gene26894.t1 | AT4G14910 | 87.374 | 198 | 24 | 1 | 71 | 268 | 67 | 263 | 4.99e-124 | 356 |
| MS.gene26894.t1 | AT3G22425 | 88.722 | 133 | 15 | 0 | 80 | 212 | 73 | 205 | 5.02e-84 | 253 |
Find 79 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCAGTTAAAATTAATT+TGG | 0.145809 | 1.4:-80285775 | MS.gene26894:CDS |
| AAAATTAATTTGGATGGAAA+TGG | 0.293645 | 1.4:-80285765 | MS.gene26894:CDS |
| GAACATCTCCGCCGCTGCTT+TGG | 0.321234 | 1.4:-80285970 | MS.gene26894:CDS |
| AAATTAATTTGGATGGAAAT+GGG | 0.326506 | 1.4:-80285764 | MS.gene26894:CDS |
| ATCATTTCAGGTGCTAGAAT+TGG | 0.340324 | 1.4:-80285828 | MS.gene26894:intron |
| CAGGCTTTGCTGCAGGCTCT+TGG | 0.348810 | 1.4:-80284720 | MS.gene26894:CDS |
| GAAGTAAAACCTGAGTCAAT+TGG | 0.354938 | 1.4:+80285915 | None:intergenic |
| GAAGACGTCGCTCTTGCTAT+TGG | 0.362088 | 1.4:-80285064 | MS.gene26894:CDS |
| CATCTCCGCCGCTGCTTTGG+TGG | 0.367364 | 1.4:-80285967 | MS.gene26894:CDS |
| GGGGTTGCTGACAATAGTTC+TGG | 0.372631 | 1.4:-80285744 | MS.gene26894:CDS |
| CCCCAAATATGCAGTTCAAA+AGG | 0.380345 | 1.4:-80282927 | MS.gene26894:intron |
| TTTGAGTGCAACTGAGTTTG+AGG | 0.380634 | 1.4:+80286122 | None:intergenic |
| AACTGATACATTCGTTTCCT+TGG | 0.395462 | 1.4:+80285788 | None:intergenic |
| TTCCGTCTCTGAAATCATCT+AGG | 0.399239 | 1.4:-80286088 | MS.gene26894:CDS |
| CCCAAATATGCAGTTCAAAA+GGG | 0.403925 | 1.4:-80282926 | MS.gene26894:intron |
| CAGTCATTGGTGAACACGTC+TGG | 0.411067 | 1.4:-80283918 | MS.gene26894:CDS |
| AGCCCTAGCAAATGCTTTGA+AGG | 0.411264 | 1.4:+80283610 | None:intergenic |
| AAAAGTGGGCATGTTGGGTT+GGG | 0.421518 | 1.4:+80286041 | None:intergenic |
| TCAGTTAAAATTAATTTGGA+TGG | 0.425680 | 1.4:-80285771 | MS.gene26894:CDS |
| GTCCTTGTCCAGGATTTGTC+TGG | 0.426181 | 1.4:-80284219 | MS.gene26894:intron |
| TGCTGCAGGCTCTTGGTGAT+AGG | 0.428704 | 1.4:-80284713 | MS.gene26894:CDS |
| TCGTCTCCAGGCTTTGCTGC+AGG | 0.430773 | 1.4:-80284727 | MS.gene26894:intron |
| ATCAAGCATATGATCAAGAA+AGG | 0.443469 | 1.4:+80285716 | None:intergenic |
| TCCGCCGCTGCTTTGGTGGA+TGG | 0.445471 | 1.4:-80285963 | MS.gene26894:CDS |
| TTGTCTGGCCGACCGCATCT+TGG | 0.446149 | 1.4:-80284204 | MS.gene26894:CDS |
| AAGCATTTGCTAGGGCTCTT+CGG | 0.447166 | 1.4:-80283604 | MS.gene26894:CDS |
| GATGATTTCAGAGACGGAAA+TGG | 0.447710 | 1.4:+80286092 | None:intergenic |
| ATTCAGTGAGGTGAGATTGC+GGG | 0.447732 | 1.4:+80286001 | None:intergenic |
| AGCATTAGTTCACGTTTCTC+TGG | 0.449545 | 1.4:-80284646 | MS.gene26894:intron |
| AAGTAAAACCTGAGTCAATT+GGG | 0.453277 | 1.4:+80285916 | None:intergenic |
| GTGATAGGAAGGGTATTAAC+CGG | 0.453455 | 1.4:-80284698 | MS.gene26894:CDS |
| AGGAAGGGTATTAACCGGTT+TGG | 0.454615 | 1.4:-80284693 | MS.gene26894:CDS |
| AGCAGCGGCGGAGATGTTCC+TGG | 0.459063 | 1.4:+80285974 | None:intergenic |
| CTAGAATTGGAGAGGTGAAA+AGG | 0.463775 | 1.4:-80285815 | MS.gene26894:CDS |
| CAACCTTCAAAGCATTTGCT+AGG | 0.466744 | 1.4:-80283613 | MS.gene26894:CDS |
| AATTAATTTGGATGGAAATG+GGG | 0.492287 | 1.4:-80285763 | MS.gene26894:CDS |
| TCCGTCTCTGAAATCATCTA+GGG | 0.497267 | 1.4:-80286087 | MS.gene26894:CDS |
| GATGTACATGTAAAGGCTAC+AGG | 0.514409 | 1.4:-80285118 | MS.gene26894:CDS |
| AAATTCCCATCATATTATTG+AGG | 0.526922 | 1.4:-80283636 | MS.gene26894:CDS |
| TCAACTTTCCCAATTGACTC+AGG | 0.527990 | 1.4:-80285924 | MS.gene26894:intron |
| GCAGGCTCTTGGTGATAGGA+AGG | 0.531782 | 1.4:-80284709 | MS.gene26894:CDS |
| AGGTTGCCTCAATAATATGA+TGG | 0.535692 | 1.4:+80283630 | None:intergenic |
| GCTGCTTTGGTGGATGGCAA+TGG | 0.538954 | 1.4:-80285957 | MS.gene26894:CDS |
| AACATACCTACTCAGAGGGT+CGG | 0.540256 | 1.4:-80284171 | MS.gene26894:CDS |
| CGACGTCTTCATTTGTGTGA+TGG | 0.540321 | 1.4:+80285077 | None:intergenic |
| ACATACCTACTCAGAGGGTC+GGG | 0.541070 | 1.4:-80284170 | MS.gene26894:CDS |
| ACTGTTCGATGTACATGTAA+AGG | 0.547472 | 1.4:-80285125 | MS.gene26894:CDS |
| TTTCAGCAACTTGCTTCACA+TGG | 0.548570 | 1.4:-80285148 | MS.gene26894:intron |
| TGAACTAATGCTTCATCAAG+TGG | 0.551680 | 1.4:+80284657 | None:intergenic |
| GCCATCCACCAAAGCAGCGG+CGG | 0.554726 | 1.4:+80285962 | None:intergenic |
| GATTCAGTGAGGTGAGATTG+CGG | 0.555231 | 1.4:+80286000 | None:intergenic |
| GAGCAGAGAAGTTACCAAAC+CGG | 0.559283 | 1.4:+80284679 | None:intergenic |
| ACCCTAGATGATTTCAGAGA+CGG | 0.560120 | 1.4:+80286086 | None:intergenic |
| AACCTTCAAAGCATTTGCTA+GGG | 0.561828 | 1.4:-80283612 | MS.gene26894:CDS |
| TCAAGCATATGATCAAGAAA+GGG | 0.563364 | 1.4:+80285717 | None:intergenic |
| CCAAATATGCAGTTCAAAAG+GGG | 0.563559 | 1.4:-80282925 | MS.gene26894:intron |
| GGTTGCCTCAATAATATGAT+GGG | 0.565515 | 1.4:+80283631 | None:intergenic |
| TAGAATTGGAGAGGTGAAAA+GGG | 0.571453 | 1.4:-80285814 | MS.gene26894:CDS |
| GCAGCGGCGGAGATGTTCCT+GGG | 0.571795 | 1.4:+80285975 | None:intergenic |
| CAGACGTGTTCACCAATGAC+TGG | 0.584195 | 1.4:+80283919 | None:intergenic |
| TATGACTCTTCACATTCGAC+AGG | 0.595535 | 1.4:-80283895 | MS.gene26894:intron |
| ATTGCCATCCACCAAAGCAG+CGG | 0.599331 | 1.4:+80285959 | None:intergenic |
| TCACCTCACTGAATCCTCCC+AGG | 0.604648 | 1.4:-80285992 | MS.gene26894:CDS |
| GGTCGGGACGTATGACACTC+AGG | 0.607780 | 1.4:-80284154 | MS.gene26894:intron |
| GAGTATGATACACGCCGCCG+TGG | 0.612129 | 1.4:-80283572 | MS.gene26894:CDS |
| TTCAGGTGCTAGAATTGGAG+AGG | 0.615450 | 1.4:-80285823 | MS.gene26894:intron |
| TAGACCTTGGTATTGTTCCA+CGG | 0.621082 | 1.4:+80283555 | None:intergenic |
| CAGGCTCTTGGTGATAGGAA+GGG | 0.631297 | 1.4:-80284708 | MS.gene26894:CDS |
| TTTAAACATACCTACTCAGA+GGG | 0.645824 | 1.4:-80284175 | MS.gene26894:CDS |
| CGTCGCTCTTGCTATTGGAA+CGG | 0.654834 | 1.4:-80285059 | MS.gene26894:intron |
| AATCATAACCAAGATGCGGT+CGG | 0.655326 | 1.4:+80284196 | None:intergenic |
| TTTAAATCATAACCAAGATG+CGG | 0.660391 | 1.4:+80284192 | None:intergenic |
| TACGTCCCGACCCTCTGAGT+AGG | 0.691428 | 1.4:+80284165 | None:intergenic |
| ATTTAAACATACCTACTCAG+AGG | 0.696859 | 1.4:-80284176 | MS.gene26894:CDS |
| AGAGGTGAAAAGGGTCACCA+AGG | 0.711904 | 1.4:-80285805 | MS.gene26894:CDS |
| GCGGCGGAGATGTTCCTGGG+AGG | 0.718744 | 1.4:+80285978 | None:intergenic |
| GCCGCCGTGGAACAATACCA+AGG | 0.723313 | 1.4:-80283559 | MS.gene26894:intron |
| ACCTTGGTATTGTTCCACGG+CGG | 0.793221 | 1.4:+80283558 | None:intergenic |
| GTTCCTGGGAGGATTCAGTG+AGG | 0.795914 | 1.4:+80285989 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATATTTAAAAAGCA+TGG | + | chr1.4:80285350-80285369 | None:intergenic | 10.0% |
| !! | AATTGTAAATTAAAAAATCA+GGG | - | chr1.4:80286041-80286060 | MS.gene26894:CDS | 10.0% |
| !! | TAAGAAATACAAAAAAAAAA+TGG | + | chr1.4:80285528-80285547 | None:intergenic | 10.0% |
| !! | TAATTGTAAATTAAAAAATC+AGG | - | chr1.4:80286040-80286059 | MS.gene26894:CDS | 10.0% |
| !! | TTAAAGTTAAAATTATTGAA+TGG | - | chr1.4:80283836-80283855 | MS.gene26894:intron | 10.0% |
| !! | AAAAATCGAAAATCTTAAAA+GGG | + | chr1.4:80283173-80283192 | None:intergenic | 15.0% |
| !! | ATCTATAAAAGAATTTATCT+AGG | - | chr1.4:80283696-80283715 | MS.gene26894:intron | 15.0% |
| !! | ATGATTGTAATTAGATTATA+TGG | - | chr1.4:80285565-80285584 | MS.gene26894:intron | 15.0% |
| !! | TGATAATCCTTAATTTATAT+TGG | + | chr1.4:80285989-80286008 | None:intergenic | 15.0% |
| !! | TGTATCAGTTAAAATTAATT+TGG | - | chr1.4:80283270-80283289 | MS.gene26894:intron | 15.0% |
| !! | AAAATCGAAAATCTTAAAAG+GGG | + | chr1.4:80283172-80283191 | None:intergenic | 20.0% |
| !! | AAATATGGTAAATCTGTAAA+TGG | - | chr1.4:80284516-80284535 | MS.gene26894:intron | 20.0% |
| !! | AAGATTATAATCATTGTTAG+AGG | + | chr1.4:80284205-80284224 | None:intergenic | 20.0% |
| !! | AATTAGTCATTAATAGTGTT+AGG | - | chr1.4:80283810-80283829 | MS.gene26894:intron | 20.0% |
| !! | ATTAGTCATTAATAGTGTTA+GGG | - | chr1.4:80283811-80283830 | MS.gene26894:intron | 20.0% |
| !! | ATTGTAATGATAACTGATTA+GGG | - | chr1.4:80283751-80283770 | MS.gene26894:intron | 20.0% |
| !! | GAAAAATCGAAAATCTTAAA+AGG | + | chr1.4:80283174-80283193 | None:intergenic | 20.0% |
| !! | TCAATTAGTTAAATTGCATT+TGG | + | chr1.4:80284174-80284193 | None:intergenic | 20.0% |
| !!! | AAAATTAATTTGGATGGAAA+TGG | - | chr1.4:80283280-80283299 | MS.gene26894:intron | 20.0% |
| !!! | AAATTAATTTGGATGGAAAT+GGG | - | chr1.4:80283281-80283300 | MS.gene26894:intron | 20.0% |
| !!! | ATTACGTTTTTTATCATTTC+AGG | - | chr1.4:80283205-80283224 | MS.gene26894:intron | 20.0% |
| !!! | ATTTTATTTAAACATGACTG+TGG | + | chr1.4:80285753-80285772 | None:intergenic | 20.0% |
| !!! | CTGTTTATTTCTTTTCTTTT+TGG | - | chr1.4:80284030-80284049 | MS.gene26894:intron | 20.0% |
| !!! | TCAGTTAAAATTAATTTGGA+TGG | - | chr1.4:80283274-80283293 | MS.gene26894:intron | 20.0% |
| !!! | TTCAAATAAGTTTTCAATCA+CGG | - | chr1.4:80285793-80285812 | MS.gene26894:CDS | 20.0% |
| !!! | TTTTATTTAAACATGACTGT+GGG | + | chr1.4:80285752-80285771 | None:intergenic | 20.0% |
| ! | AAATTCCCATCATATTATTG+AGG | - | chr1.4:80285409-80285428 | MS.gene26894:intron | 25.0% |
| ! | AAGGTTTCTGAATTGAAATT+CGG | - | chr1.4:80284716-80284735 | MS.gene26894:CDS | 25.0% |
| ! | AATGGATGATACATCATTTA+TGG | - | chr1.4:80283854-80283873 | MS.gene26894:intron | 25.0% |
| ! | ACTATAACAAAAACTCACAA+CGG | + | chr1.4:80283595-80283614 | None:intergenic | 25.0% |
| ! | ATCCTTAATTTATATTGGTG+AGG | + | chr1.4:80285984-80286003 | None:intergenic | 25.0% |
| ! | ATGGATGATACATCATTTAT+GGG | - | chr1.4:80283855-80283874 | MS.gene26894:intron | 25.0% |
| ! | ATTTACCATATTTGTAAGCA+AGG | + | chr1.4:80284509-80284528 | None:intergenic | 25.0% |
| ! | GAGAAAGCAAAAATAATGAA+GGG | + | chr1.4:80285060-80285079 | None:intergenic | 25.0% |
| ! | GATTGTAATGATAACTGATT+AGG | - | chr1.4:80283750-80283769 | MS.gene26894:intron | 25.0% |
| ! | GCACAAAATAGAAATTATAG+TGG | + | chr1.4:80284785-80284804 | None:intergenic | 25.0% |
| ! | GCATATTTCTTTCATATGAA+AGG | + | chr1.4:80285242-80285261 | None:intergenic | 25.0% |
| ! | GCTTATAAATGTGATTAAGA+TGG | + | chr1.4:80284754-80284773 | None:intergenic | 25.0% |
| ! | GTCTGTTTAAATATACTTCA+TGG | - | chr1.4:80284922-80284941 | MS.gene26894:intron | 25.0% |
| ! | TAGATATTAGATAATGAGCT+AGG | - | chr1.4:80283648-80283667 | MS.gene26894:CDS | 25.0% |
| ! | TCCTTAATTTATATTGGTGA+GGG | + | chr1.4:80285983-80286002 | None:intergenic | 25.0% |
| ! | TGAGAAAGCAAAAATAATGA+AGG | + | chr1.4:80285061-80285080 | None:intergenic | 25.0% |
| ! | TGCACAAATGAATTCAAAAT+TGG | + | chr1.4:80285377-80285396 | None:intergenic | 25.0% |
| ! | TTTAAATCATAACCAAGATG+CGG | + | chr1.4:80284856-80284875 | None:intergenic | 25.0% |
| !! | AATTAATTTGGATGGAAATG+GGG | - | chr1.4:80283282-80283301 | MS.gene26894:intron | 25.0% |
| !! | ATTTAAGTTAACGTGTGTTA+GGG | - | chr1.4:80284469-80284488 | MS.gene26894:intron | 25.0% |
| !!! | GAAACTTTGAAACTATGTAA+TGG | - | chr1.4:80284544-80284563 | MS.gene26894:intron | 25.0% |
| AAGAAATATGCTGAATGCTA+TGG | - | chr1.4:80285251-80285270 | MS.gene26894:intron | 30.0% | |
| AAGATTGAAGCTTGAAAAAG+TGG | + | chr1.4:80283022-80283041 | None:intergenic | 30.0% | |
| AAGTAAAACCTGAGTCAATT+GGG | + | chr1.4:80283132-80283151 | None:intergenic | 30.0% | |
| ACCCTCACCAATATAAATTA+AGG | - | chr1.4:80285979-80285998 | MS.gene26894:CDS | 30.0% | |
| AGATTGAAGCTTGAAAAAGT+GGG | + | chr1.4:80283021-80283040 | None:intergenic | 30.0% | |
| AGGAATTGAACATTCAATAC+AGG | + | chr1.4:80285671-80285690 | None:intergenic | 30.0% | |
| AGTCGCAAAATTTATTGATG+TGG | + | chr1.4:80284616-80284635 | None:intergenic | 30.0% | |
| ATCAAGCATATGATCAAGAA+AGG | + | chr1.4:80283332-80283351 | None:intergenic | 30.0% | |
| ATCATTTATGGGAACAAACT+TGG | - | chr1.4:80283866-80283885 | MS.gene26894:intron | 30.0% | |
| ATTTAAACATACCTACTCAG+AGG | - | chr1.4:80284869-80284888 | MS.gene26894:intron | 30.0% | |
| CAACAATACTTTAGATTGAC+TGG | + | chr1.4:80283533-80283552 | None:intergenic | 30.0% | |
| GATTATAATCTTATCACCGT+GGG | - | chr1.4:80284213-80284232 | MS.gene26894:intron | 30.0% | |
| GCAAAAATAATGAAGGGTAA+AGG | + | chr1.4:80285054-80285073 | None:intergenic | 30.0% | |
| GTGAAGTTAAATCTTTGCAT+TGG | - | chr1.4:80284131-80284150 | MS.gene26894:intron | 30.0% | |
| TCAAGCATATGATCAAGAAA+GGG | + | chr1.4:80283331-80283350 | None:intergenic | 30.0% | |
| TGAGGATATTGCTTAAAGAT+AGG | - | chr1.4:80284107-80284126 | MS.gene26894:intron | 30.0% | |
| TGATTATAATCTTATCACCG+TGG | - | chr1.4:80284212-80284231 | MS.gene26894:intron | 30.0% | |
| TTCAATCCAGAGTATAAACA+AGG | + | chr1.4:80285691-80285710 | None:intergenic | 30.0% | |
| TTTAAACATACCTACTCAGA+GGG | - | chr1.4:80284870-80284889 | MS.gene26894:intron | 30.0% | |
| TTTGACTATTGAGCTTCAAA+TGG | - | chr1.4:80284973-80284992 | MS.gene26894:intron | 30.0% | |
| TTTGTCCTTGCTTACAAATA+TGG | - | chr1.4:80284501-80284520 | MS.gene26894:intron | 30.0% | |
| ! | AAGTTGATTGAAAATTCCCA+CGG | + | chr1.4:80284232-80284251 | None:intergenic | 30.0% |
| ! | AATTCATTTGTGCAGTTTTC+TGG | - | chr1.4:80285383-80285402 | MS.gene26894:intron | 30.0% |
| ! | CGAACATGCTTCATTATTTT+AGG | - | chr1.4:80284083-80284102 | MS.gene26894:intron | 30.0% |
| ! | CTTGTTGTAATAAAGTAACG+AGG | + | chr1.4:80285634-80285653 | None:intergenic | 30.0% |
| ! | GATTTAAGTTAACGTGTGTT+AGG | - | chr1.4:80284468-80284487 | MS.gene26894:intron | 30.0% |
| ! | TCAATTCCTTGTTTATACTC+TGG | - | chr1.4:80285682-80285701 | MS.gene26894:intron | 30.0% |
| !! | AACAGAGAGTTGATGATTAT+TGG | + | chr1.4:80284445-80284464 | None:intergenic | 30.0% |
| !! | AATCATTGTTAGAGGTATTG+TGG | + | chr1.4:80284197-80284216 | None:intergenic | 30.0% |
| !! | GGTACTGATACATAGAATAT+AGG | - | chr1.4:80285171-80285190 | MS.gene26894:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+TGG | + | chr1.4:80285881-80285900 | None:intergenic | 30.0% |
| !!! | GACTAATTTTCGAGTTAGAA+AGG | + | chr1.4:80283798-80283817 | None:intergenic | 30.0% |
| !!! | TGCTTCATTATTTTAGGTTG+AGG | - | chr1.4:80284089-80284108 | MS.gene26894:intron | 30.0% |
| AACTGATACATTCGTTTCCT+TGG | + | chr1.4:80283260-80283279 | None:intergenic | 35.0% | |
| ACTGTTCGATGTACATGTAA+AGG | - | chr1.4:80283920-80283939 | MS.gene26894:CDS | 35.0% | |
| AGGTTGCCTCAATAATATGA+TGG | + | chr1.4:80285418-80285437 | None:intergenic | 35.0% | |
| ATTTATAGGTGACCAAGTGT+CGG | + | chr1.4:80283441-80283460 | None:intergenic | 35.0% | |
| CAACGGAATAATACACATTC+TGG | + | chr1.4:80283578-80283597 | None:intergenic | 35.0% | |
| CATAGAATATAGGTCAGAGT+CGG | - | chr1.4:80285181-80285200 | MS.gene26894:intron | 35.0% | |
| CCAAATATGCAGTTCAAAAG+GGG | - | chr1.4:80286120-80286139 | MS.gene26894:CDS | 35.0% | |
| CCCAAATATGCAGTTCAAAA+GGG | - | chr1.4:80286119-80286138 | MS.gene26894:CDS | 35.0% | |
| GAAGTAAAACCTGAGTCAAT+TGG | + | chr1.4:80283133-80283152 | None:intergenic | 35.0% | |
| GGTTGCCTCAATAATATGAT+GGG | + | chr1.4:80285417-80285436 | None:intergenic | 35.0% | |
| GTTGTAATAAAGTAACGAGG+AGG | + | chr1.4:80285631-80285650 | None:intergenic | 35.0% | |
| TAATGAAGGGTAAAGGTGAA+AGG | + | chr1.4:80285047-80285066 | None:intergenic | 35.0% | |
| TAGAATTGGAGAGGTGAAAA+GGG | - | chr1.4:80283231-80283250 | MS.gene26894:intron | 35.0% | |
| TGAACTAATGCTTCATCAAG+TGG | + | chr1.4:80284391-80284410 | None:intergenic | 35.0% | |
| ! | AACCTTCAAAGCATTTGCTA+GGG | - | chr1.4:80285433-80285452 | MS.gene26894:intron | 35.0% |
| ! | AATGCTATGGATGTTTTACC+AGG | - | chr1.4:80285264-80285283 | MS.gene26894:intron | 35.0% |
| ! | ATCATTTCAGGTGCTAGAAT+TGG | - | chr1.4:80283217-80283236 | MS.gene26894:intron | 35.0% |
| ! | CCCTTTTGAACTGCATATTT+GGG | + | chr1.4:80286122-80286141 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTGCATATTTG+GGG | + | chr1.4:80286121-80286140 | None:intergenic | 35.0% |
| AATCATAACCAAGATGCGGT+CGG | + | chr1.4:80284852-80284871 | None:intergenic | 40.0% | |
| ACCCTAGATGATTTCAGAGA+CGG | + | chr1.4:80282962-80282981 | None:intergenic | 40.0% | |
| AGCATTAGTTCACGTTTCTC+TGG | - | chr1.4:80284399-80284418 | MS.gene26894:intron | 40.0% | |
| ATAATGAGCTAGGTGCACAT+GGG | - | chr1.4:80283658-80283677 | MS.gene26894:intron | 40.0% | |
| ATATCCTTGTCTGTAGTTGG+TGG | - | chr1.4:80285093-80285112 | MS.gene26894:CDS | 40.0% | |
| CCCCAAATATGCAGTTCAAA+AGG | - | chr1.4:80286118-80286137 | MS.gene26894:CDS | 40.0% | |
| CGAAAATCTTAAAAGGGGCA+GGG | + | chr1.4:80283167-80283186 | None:intergenic | 40.0% | |
| CTAGAATTGGAGAGGTGAAA+AGG | - | chr1.4:80283230-80283249 | MS.gene26894:intron | 40.0% | |
| CTTGAAAAAGTGGGCATGTT+GGG | + | chr1.4:80283012-80283031 | None:intergenic | 40.0% | |
| GAAAATCTTAAAAGGGGCAG+GGG | + | chr1.4:80283166-80283185 | None:intergenic | 40.0% | |
| GATGATTTCAGAGACGGAAA+TGG | + | chr1.4:80282956-80282975 | None:intergenic | 40.0% | |
| GATGTACATGTAAAGGCTAC+AGG | - | chr1.4:80283927-80283946 | MS.gene26894:CDS | 40.0% | |
| GTTTGAGAGATACTAGACCT+TGG | + | chr1.4:80285506-80285525 | None:intergenic | 40.0% | |
| TAGACCTTGGTATTGTTCCA+CGG | + | chr1.4:80285493-80285512 | None:intergenic | 40.0% | |
| TAGATTGACTGGACAAGTGT+TGG | + | chr1.4:80283522-80283541 | None:intergenic | 40.0% | |
| TATGACTCTTCACATTCGAC+AGG | - | chr1.4:80285150-80285169 | MS.gene26894:intron | 40.0% | |
| TCGAAAATCTTAAAAGGGGC+AGG | + | chr1.4:80283168-80283187 | None:intergenic | 40.0% | |
| TCTAGCAGTACTTGTTCACA+AGG | - | chr1.4:80284697-80284716 | MS.gene26894:CDS | 40.0% | |
| TGAAGCATGTTCGACATTTC+AGG | + | chr1.4:80284076-80284095 | None:intergenic | 40.0% | |
| TGCATATCCTTGTCTGTAGT+TGG | - | chr1.4:80285090-80285109 | MS.gene26894:CDS | 40.0% | |
| TTCGTTACACTAGACAACAC+TGG | - | chr1.4:80285941-80285960 | MS.gene26894:CDS | 40.0% | |
| TTTGAGTGCAACTGAGTTTG+AGG | + | chr1.4:80282926-80282945 | None:intergenic | 40.0% | |
| ! | AAGTTTTCAATCACGGATCG+CGG | - | chr1.4:80285800-80285819 | MS.gene26894:CDS | 40.0% |
| ! | ATTTCTGTTACTTCGTCTCC+AGG | - | chr1.4:80284306-80284325 | MS.gene26894:intron | 40.0% |
| ! | CAACCTTCAAAGCATTTGCT+AGG | - | chr1.4:80285432-80285451 | MS.gene26894:intron | 40.0% |
| ! | CCCCTTTTGAACTGCATATT+TGG | + | chr1.4:80286123-80286142 | None:intergenic | 40.0% |
| ! | TCAACTTTCCCAATTGACTC+AGG | - | chr1.4:80283121-80283140 | MS.gene26894:intron | 40.0% |
| ! | TTTCAGCAACTTGCTTCACA+TGG | - | chr1.4:80283897-80283916 | MS.gene26894:CDS | 40.0% |
| !! | GTGATAGGAAGGGTATTAAC+CGG | - | chr1.4:80284347-80284366 | MS.gene26894:intron | 40.0% |
| !! | TCCGTCTCTGAAATCATCTA+GGG | - | chr1.4:80282958-80282977 | MS.gene26894:intron | 40.0% |
| !! | TTCCGTCTCTGAAATCATCT+AGG | - | chr1.4:80282957-80282976 | MS.gene26894:intron | 40.0% |
| !!! | GGAGCATTTTTTCCAGTCAT+TGG | - | chr1.4:80285114-80285133 | MS.gene26894:CDS | 40.0% |
| AAAAAGTGGGCATGTTGGGT+TGG | + | chr1.4:80283008-80283027 | None:intergenic | 45.0% | |
| AAAAGTGGGCATGTTGGGTT+GGG | + | chr1.4:80283007-80283026 | None:intergenic | 45.0% | |
| AACATACCTACTCAGAGGGT+CGG | - | chr1.4:80284874-80284893 | MS.gene26894:intron | 45.0% | |
| AACGAGAAAGCCATGACACA+GGG | + | chr1.4:80284674-80284693 | None:intergenic | 45.0% | |
| ACAAATCCTGGACAAGGACA+GGG | + | chr1.4:80284825-80284844 | None:intergenic | 45.0% | |
| AGCCCTAGCAAATGCTTTGA+AGG | + | chr1.4:80285438-80285457 | None:intergenic | 45.0% | |
| ATTCAGTGAGGTGAGATTGC+GGG | + | chr1.4:80283047-80283066 | None:intergenic | 45.0% | |
| CGACGTCTTCATTTGTGTGA+TGG | + | chr1.4:80283971-80283990 | None:intergenic | 45.0% | |
| CTACAGACAAGGATATGCAG+AGG | + | chr1.4:80285089-80285108 | None:intergenic | 45.0% | |
| GAGCAGAGAAGTTACCAAAC+CGG | + | chr1.4:80284369-80284388 | None:intergenic | 45.0% | |
| GATAATGAGCTAGGTGCACA+TGG | - | chr1.4:80283657-80283676 | MS.gene26894:intron | 45.0% | |
| GATTCAGTGAGGTGAGATTG+CGG | + | chr1.4:80283048-80283067 | None:intergenic | 45.0% | |
| GCTTGAAAAAGTGGGCATGT+TGG | + | chr1.4:80283013-80283032 | None:intergenic | 45.0% | |
| TGCGACTCAGAAAGTTCAGT+TGG | - | chr1.4:80284629-80284648 | MS.gene26894:intron | 45.0% | |
| TTCAGGTGCTAGAATTGGAG+AGG | - | chr1.4:80283222-80283241 | MS.gene26894:intron | 45.0% | |
| ! | AAGCATTTGCTAGGGCTCTT+CGG | - | chr1.4:80285441-80285460 | MS.gene26894:intron | 45.0% |
| ! | AGCATGGTCTCTGAAAACTG+AGG | + | chr1.4:80285334-80285353 | None:intergenic | 45.0% |
| !! | AATGTAGAGAGCATCTAGCC+TGG | + | chr1.4:80285285-80285304 | None:intergenic | 45.0% |
| !! | AGGAAGGGTATTAACCGGTT+TGG | - | chr1.4:80284352-80284371 | MS.gene26894:intron | 45.0% |
| !!! | CATTTATTTTAAATATTTAT+AGG | + | chr1.4:80283455-80283474 | None:intergenic | 5.0% |
| !!! | CTATAAATATTTAAAATAAA+TGG | - | chr1.4:80283453-80283472 | MS.gene26894:intron | 5.0% |
| ACATACCTACTCAGAGGGTC+GGG | - | chr1.4:80284875-80284894 | MS.gene26894:intron | 50.0% | |
| ACCTTGGTATTGTTCCACGG+CGG | + | chr1.4:80285490-80285509 | None:intergenic | 50.0% | |
| AGAGGTGAAAAGGGTCACCA+AGG | - | chr1.4:80283240-80283259 | MS.gene26894:intron | 50.0% | |
| ATACACCGAACACCGACACT+TGG | - | chr1.4:80283426-80283445 | MS.gene26894:intron | 50.0% | |
| ATTGCCATCCACCAAAGCAG+CGG | + | chr1.4:80283089-80283108 | None:intergenic | 50.0% | |
| CAGACGTGTTCACCAATGAC+TGG | + | chr1.4:80285129-80285148 | None:intergenic | 50.0% | |
| CAGTCATTGGTGAACACGTC+TGG | - | chr1.4:80285127-80285146 | MS.gene26894:CDS | 50.0% | |
| CTAGGTGCACATGGGATGAA+TGG | - | chr1.4:80283666-80283685 | MS.gene26894:intron | 50.0% | |
| GAACGAGAAAGCCATGACAC+AGG | + | chr1.4:80284675-80284694 | None:intergenic | 50.0% | |
| GACAAATCCTGGACAAGGAC+AGG | + | chr1.4:80284826-80284845 | None:intergenic | 50.0% | |
| GGGGTTGCTGACAATAGTTC+TGG | - | chr1.4:80283301-80283320 | MS.gene26894:intron | 50.0% | |
| GTCCTTGTCCAGGATTTGTC+TGG | - | chr1.4:80284826-80284845 | MS.gene26894:intron | 50.0% | |
| TGCTCCACCAACTACAGACA+AGG | + | chr1.4:80285100-80285119 | None:intergenic | 50.0% | |
| ! | CAGGCTCTTGGTGATAGGAA+GGG | - | chr1.4:80284337-80284356 | MS.gene26894:intron | 50.0% |
| ! | GAAGACGTCGCTCTTGCTAT+TGG | - | chr1.4:80283981-80284000 | MS.gene26894:intron | 50.0% |
| !! | CGTCGCTCTTGCTATTGGAA+CGG | - | chr1.4:80283986-80284005 | MS.gene26894:intron | 50.0% |
| !! | GACTGGACAAGTGTTGGAGT+CGG | + | chr1.4:80283516-80283535 | None:intergenic | 50.0% |
| AATCCTGGACAAGGACAGGG+AGG | + | chr1.4:80284822-80284841 | None:intergenic | 55.0% | |
| ACACAGGGCAACAAGCTCAC+TGG | + | chr1.4:80284659-80284678 | None:intergenic | 55.0% | |
| GGCCAGACAAATCCTGGACA+AGG | + | chr1.4:80284831-80284850 | None:intergenic | 55.0% | |
| GTTCCTGGGAGGATTCAGTG+AGG | + | chr1.4:80283059-80283078 | None:intergenic | 55.0% | |
| TCACCTCACTGAATCCTCCC+AGG | - | chr1.4:80283053-80283072 | MS.gene26894:intron | 55.0% | |
| TCTTAAAAGGGGCAGGGGTG+AGG | + | chr1.4:80283161-80283180 | None:intergenic | 55.0% | |
| ! | GCAGGCTCTTGGTGATAGGA+AGG | - | chr1.4:80284336-80284355 | MS.gene26894:intron | 55.0% |
| ! | GCTGCTTTGGTGGATGGCAA+TGG | - | chr1.4:80283088-80283107 | MS.gene26894:intron | 55.0% |
| ! | TGCTGCAGGCTCTTGGTGAT+AGG | - | chr1.4:80284332-80284351 | MS.gene26894:intron | 55.0% |
| !! | GAGCTTGTTGCCCTGTGTCA+TGG | - | chr1.4:80284661-80284680 | MS.gene26894:CDS | 55.0% |
| !! | GGTGACCAAGTGTCGGTGTT+CGG | + | chr1.4:80283434-80283453 | None:intergenic | 55.0% |
| CAAGAGCCTGCAGCAAAGCC+TGG | + | chr1.4:80284327-80284346 | None:intergenic | 60.0% | |
| CAGGCTTTGCTGCAGGCTCT+TGG | - | chr1.4:80284325-80284344 | MS.gene26894:intron | 60.0% | |
| GAACATCTCCGCCGCTGCTT+TGG | - | chr1.4:80283075-80283094 | MS.gene26894:intron | 60.0% | |
| GAGTATGATACACGCCGCCG+TGG | - | chr1.4:80285473-80285492 | MS.gene26894:intron | 60.0% | |
| GCCGCCGTGGAACAATACCA+AGG | - | chr1.4:80285486-80285505 | MS.gene26894:intron | 60.0% | |
| GGTCGGGACGTATGACACTC+AGG | - | chr1.4:80284891-80284910 | MS.gene26894:intron | 60.0% | |
| GTTCCTCCCTGTCCTTGTCC+AGG | - | chr1.4:80284816-80284835 | MS.gene26894:intron | 60.0% | |
| TACGTCCCGACCCTCTGAGT+AGG | + | chr1.4:80284883-80284902 | None:intergenic | 60.0% | |
| TCGTCTCCAGGCTTTGCTGC+AGG | - | chr1.4:80284318-80284337 | MS.gene26894:intron | 60.0% | |
| TTGTCTGGCCGACCGCATCT+TGG | - | chr1.4:80284841-80284860 | MS.gene26894:intron | 60.0% | |
| AGCAGCGGCGGAGATGTTCC+TGG | + | chr1.4:80283074-80283093 | None:intergenic | 65.0% | |
| GCAGCGGCGGAGATGTTCCT+GGG | + | chr1.4:80283073-80283092 | None:intergenic | 65.0% | |
| GCCATCCACCAAAGCAGCGG+CGG | + | chr1.4:80283086-80283105 | None:intergenic | 65.0% | |
| GCGGTCGGCCAGACAAATCC+TGG | + | chr1.4:80284837-80284856 | None:intergenic | 65.0% | |
| ! | CATCTCCGCCGCTGCTTTGG+TGG | - | chr1.4:80283078-80283097 | MS.gene26894:intron | 65.0% |
| ! | TCCGCCGCTGCTTTGGTGGA+TGG | - | chr1.4:80283082-80283101 | MS.gene26894:intron | 65.0% |
| GCGGCGGAGATGTTCCTGGG+AGG | + | chr1.4:80283070-80283089 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80282908 | 80286159 | 80282908 | ID=MS.gene26894 |
| chr1.4 | mRNA | 80282908 | 80286159 | 80282908 | ID=MS.gene26894.t1;Parent=MS.gene26894 |
| chr1.4 | exon | 80285925 | 80286159 | 80285925 | ID=MS.gene26894.t1.exon1;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80285925 | 80286159 | 80285925 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| chr1.4 | exon | 80285716 | 80285840 | 80285716 | ID=MS.gene26894.t1.exon2;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80285716 | 80285840 | 80285716 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| chr1.4 | exon | 80285060 | 80285164 | 80285060 | ID=MS.gene26894.t1.exon3;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80285060 | 80285164 | 80285060 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| chr1.4 | exon | 80284647 | 80284739 | 80284647 | ID=MS.gene26894.t1.exon4;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80284647 | 80284739 | 80284647 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| chr1.4 | exon | 80284155 | 80284229 | 80284155 | ID=MS.gene26894.t1.exon5;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80284155 | 80284229 | 80284155 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| chr1.4 | exon | 80283896 | 80283958 | 80283896 | ID=MS.gene26894.t1.exon6;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80283896 | 80283958 | 80283896 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| chr1.4 | exon | 80283560 | 80283669 | 80283560 | ID=MS.gene26894.t1.exon7;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80283560 | 80283669 | 80283560 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| chr1.4 | exon | 80282908 | 80282935 | 80282908 | ID=MS.gene26894.t1.exon8;Parent=MS.gene26894.t1 |
| chr1.4 | CDS | 80282908 | 80282935 | 80282908 | ID=cds.MS.gene26894.t1;Parent=MS.gene26894.t1 |
| Gene Sequence |
| Protein sequence |
