Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012540.t1 | XP_003610300.1 | 96.6 | 377 | 7 | 2 | 1 | 375 | 1 | 373 | 6.20E-201 | 709.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012540.t1 | Q8GSJ1 | 81.9 | 359 | 64 | 1 | 18 | 375 | 55 | 413 | 1.9e-166 | 586.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012540.t1 | G7JFL4 | 96.6 | 377 | 7 | 2 | 1 | 375 | 1 | 373 | 4.5e-201 | 709.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33570 | MS.gene012540 | PPI |
| MS.gene26894 | MS.gene012540 | PPI |
| MS.gene80051 | MS.gene012540 | PPI |
| MS.gene006461 | MS.gene012540 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012540.t1 | MTR_4g130680 | 96.552 | 377 | 7 | 2 | 1 | 375 | 1 | 373 | 0.0 | 744 |
| MS.gene012540.t1 | MTR_2g006040 | 90.935 | 353 | 10 | 1 | 45 | 375 | 43 | 395 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012540.t1 | AT1G09795 | 81.894 | 359 | 64 | 1 | 18 | 375 | 55 | 413 | 0.0 | 612 |
| MS.gene012540.t1 | AT1G58080 | 82.789 | 337 | 58 | 0 | 39 | 375 | 75 | 411 | 0.0 | 592 |
Find 87 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAATTAACCTGAGGAATT+TGG | 0.106128 | 8.4:-3646463 | None:intergenic |
| CCATTATCTTTCATAAATTT+AGG | 0.185647 | 8.4:-3648532 | None:intergenic |
| TAACAATGTCTTTGGGTCTT+TGG | 0.196414 | 8.4:-3646590 | None:intergenic |
| CTCGATATACTCACTGAATT+TGG | 0.245090 | 8.4:+3646654 | MS.gene012540:CDS |
| AATTGAAGGTGGAACTGTTT+TGG | 0.258121 | 8.4:+3649739 | MS.gene012540:CDS |
| AGAAGACATACGACCTTTAC+TGG | 0.266634 | 8.4:-3646372 | None:intergenic |
| AATAGAGAGGTAAACGAATT+TGG | 0.271491 | 8.4:-3646250 | None:intergenic |
| TTGTTTCAGATTCCGCAATA+TGG | 0.287466 | 8.4:+3648299 | MS.gene012540:intron |
| CGTCAGCTCCTTTCTAAACT+TGG | 0.295403 | 8.4:+3651011 | MS.gene012540:CDS |
| TTAATTAACCTGAGGAATTT+GGG | 0.303133 | 8.4:-3646462 | None:intergenic |
| CCTAAATTTATGAAAGATAA+TGG | 0.327102 | 8.4:+3648532 | MS.gene012540:CDS |
| ATTGTTAGAAAATTGTTATC+TGG | 0.350355 | 8.4:+3646606 | MS.gene012540:CDS |
| AGACTTGTACAGTGCCTTCT+TGG | 0.359607 | 8.4:-3650470 | None:intergenic |
| TATCGTTGTCCACGAGGCTT+TGG | 0.367464 | 8.4:+3648156 | MS.gene012540:CDS |
| AGATTTCAAACTTGGAAGTC+TGG | 0.377840 | 8.4:+3646565 | MS.gene012540:intron |
| TTATCTGGAGATCTTGATCT+TGG | 0.378632 | 8.4:+3646621 | MS.gene012540:CDS |
| CCATCGCGCTTGCAGAAAAC+AGG | 0.381923 | 8.4:-3650406 | None:intergenic |
| CTTGGGCACACATATGACTA+TGG | 0.388474 | 8.4:-3650452 | None:intergenic |
| AAGCCTCTGCGAGTTGCAAC+TGG | 0.392840 | 8.4:+3648383 | MS.gene012540:CDS |
| TGAGATGCTTGAAAGATTAG+AGG | 0.394252 | 8.4:+3649988 | MS.gene012540:CDS |
| TACACTGCAGATTTCAAACT+TGG | 0.415322 | 8.4:+3646557 | MS.gene012540:intron |
| ACCATCGTTAGCTGGGTTGC+AGG | 0.420563 | 8.4:+3650185 | MS.gene012540:CDS |
| GGGGATTGCTGATGCTATCT+TGG | 0.420913 | 8.4:+3649670 | MS.gene012540:CDS |
| CTGAGCCAACCATCGTTAGC+TGG | 0.423235 | 8.4:+3650177 | MS.gene012540:CDS |
| GACTTGTACAGTGCCTTCTT+GGG | 0.445015 | 8.4:-3650469 | None:intergenic |
| GTCAGCTCCTTTCTAAACTT+GGG | 0.445359 | 8.4:+3651012 | MS.gene012540:CDS |
| GATCTTGATCTTGGTATTGT+CGG | 0.455049 | 8.4:+3646630 | MS.gene012540:CDS |
| GTTGAAAGAAAATAACTTGA+AGG | 0.459040 | 8.4:+3649715 | MS.gene012540:CDS |
| GAGGGCTATGGGGCAGTTCA+CGG | 0.460141 | 8.4:+3650018 | MS.gene012540:CDS |
| AGAGGCACATCTGAGGGCTA+TGG | 0.460886 | 8.4:+3650006 | MS.gene012540:CDS |
| TTCGACTGCTGACGGAGCAC+TGG | 0.466865 | 8.4:+3648573 | MS.gene012540:CDS |
| GTCCACGAGGCTTTGGAGTA+CGG | 0.469178 | 8.4:+3648163 | MS.gene012540:CDS |
| GATCTCTTGTCTTCTGCTGC+CGG | 0.470766 | 8.4:-3646336 | None:intergenic |
| AGGAAGTAGTGCAGAGGAAG+TGG | 0.471067 | 8.4:+3650143 | MS.gene012540:CDS |
| TTGACGAGGAAACTCCTAGA+TGG | 0.477208 | 8.4:+3650988 | MS.gene012540:CDS |
| AGGCTGCTCTTGTTGCAAGC+AGG | 0.487061 | 8.4:+3649924 | MS.gene012540:intron |
| ACGTTGTTCCACTACTTACA+AGG | 0.492916 | 8.4:-3649694 | None:intergenic |
| TTGTCAATTGTCAGTCAAGC+AGG | 0.495907 | 8.4:+3646418 | MS.gene012540:CDS |
| GAGGCACATCTGAGGGCTAT+GGG | 0.505249 | 8.4:+3650007 | MS.gene012540:CDS |
| AAATCATTGATCGGACGAAA+AGG | 0.506065 | 8.4:+3649947 | MS.gene012540:CDS |
| GAAAGGAGCTGACGCCATCT+AGG | 0.514685 | 8.4:-3651002 | None:intergenic |
| ATGAGTCTCGGAGGAGATTG+AGG | 0.524502 | 8.4:-3646282 | None:intergenic |
| CAGAAGACAAGAGATCCGTC+TGG | 0.525828 | 8.4:+3646343 | MS.gene012540:CDS |
| GTATGTTGCCCAAATTCCTC+AGG | 0.527688 | 8.4:+3646454 | MS.gene012540:CDS |
| ACTAAAGCCCAAGTTTAGAA+AGG | 0.532749 | 8.4:-3651019 | None:intergenic |
| AATAACTTGAAGGAAATTGA+AGG | 0.546732 | 8.4:+3649725 | MS.gene012540:CDS |
| TGATACACTCGACCTTCTCA+AGG | 0.552104 | 8.4:+3646394 | MS.gene012540:CDS |
| GGCTTATCTTCTGTCCATTG+AGG | 0.552577 | 8.4:-3648365 | None:intergenic |
| ATCTTGGACCTTGTAAGTAG+TGG | 0.552901 | 8.4:+3649686 | MS.gene012540:CDS |
| TGAGCCAACCATCGTTAGCT+GGG | 0.555529 | 8.4:+3650178 | MS.gene012540:CDS |
| GACTGCTGACGGAGCACTGG+AGG | 0.563946 | 8.4:+3648576 | MS.gene012540:CDS |
| AGTCATATGTGTGCCCAAGA+AGG | 0.572168 | 8.4:+3650456 | MS.gene012540:CDS |
| AATGACAACACAATCTCCTC+CGG | 0.573673 | 8.4:+3646317 | MS.gene012540:CDS |
| AGCACTGGAGGCAGCTCCTG+CGG | 0.577767 | 8.4:+3648588 | MS.gene012540:CDS |
| ATTCATGTGATGCAGATTGG+AGG | 0.578035 | 8.4:+3650930 | MS.gene012540:intron |
| GCAACCCAGCTAACGATGGT+TGG | 0.580333 | 8.4:-3650182 | None:intergenic |
| CGTCTGGGTTTACCCAGTAA+AGG | 0.581574 | 8.4:+3646359 | MS.gene012540:CDS |
| TGAAAATGTAAATTCACTAG+AGG | 0.584392 | 8.4:+3648328 | MS.gene012540:CDS |
| TTTCTGCAAGCGCGATGGAA+AGG | 0.585463 | 8.4:+3650411 | MS.gene012540:CDS |
| CTCTTGTCTTCTGCTGCCGG+AGG | 0.586047 | 8.4:-3646333 | None:intergenic |
| TATACTCACTGAATTTGGCC+AGG | 0.586920 | 8.4:+3646659 | MS.gene012540:CDS |
| AAGATTAGAGGCACATCTGA+GGG | 0.596395 | 8.4:+3650000 | MS.gene012540:CDS |
| GTGATGCAGATTGGAGGCAG+CGG | 0.598542 | 8.4:+3650936 | MS.gene012540:intron |
| GTAATTTCAACTCACCGCAA+TGG | 0.599912 | 8.4:-3648200 | None:intergenic |
| GTCTATACAGCAACTGAGAG+CGG | 0.600820 | 8.4:+3650489 | MS.gene012540:CDS |
| AAGAACTTGATGATGAGTCT+CGG | 0.602026 | 8.4:-3646294 | None:intergenic |
| GCAAGCAGGAAATCATTGAT+CGG | 0.612487 | 8.4:+3649938 | MS.gene012540:CDS |
| AAAGATTAGAGGCACATCTG+AGG | 0.618033 | 8.4:+3649999 | MS.gene012540:CDS |
| GAAGACATACGACCTTTACT+GGG | 0.626259 | 8.4:-3646371 | None:intergenic |
| AGAAGACAAGAGATCCGTCT+GGG | 0.626407 | 8.4:+3646344 | MS.gene012540:CDS |
| ACAATTGACAATCCTTGAGA+AGG | 0.631059 | 8.4:-3646406 | None:intergenic |
| TGATTGTCGTTTATCCATTG+CGG | 0.633490 | 8.4:+3648186 | MS.gene012540:CDS |
| AGATAATGGTATTAAGCATG+TGG | 0.634797 | 8.4:+3648546 | MS.gene012540:CDS |
| GAGGCGTAGCAGCAATAGAG+AGG | 0.638994 | 8.4:-3646263 | None:intergenic |
| CAGAAAACAGGACTTACTGT+GGG | 0.647329 | 8.4:-3650394 | None:intergenic |
| CAGGTTGTAGCAAACATGAG+AGG | 0.649585 | 8.4:+3650123 | MS.gene012540:intron |
| AACTTGAAGGAAATTGAAGG+TGG | 0.649831 | 8.4:+3649728 | MS.gene012540:CDS |
| GCAGAAAACAGGACTTACTG+TGG | 0.653659 | 8.4:-3650395 | None:intergenic |
| AATCCAGTTGCAACTCGCAG+AGG | 0.653851 | 8.4:-3648386 | None:intergenic |
| CATGAGAGGAAGTAGTGCAG+AGG | 0.654817 | 8.4:+3650137 | MS.gene012540:CDS |
| AGGCACATCTGAGGGCTATG+GGG | 0.661787 | 8.4:+3650008 | MS.gene012540:CDS |
| AGATCTTATCGTTGTCCACG+AGG | 0.663229 | 8.4:+3648150 | MS.gene012540:CDS |
| ACCTGCAACCCAGCTAACGA+TGG | 0.667474 | 8.4:-3650186 | None:intergenic |
| CACCGTACTCCAAAGCCTCG+TGG | 0.672065 | 8.4:-3648165 | None:intergenic |
| CTTTACTGGGTAAACCCAGA+CGG | 0.678884 | 8.4:-3646358 | None:intergenic |
| ATTTGGGCAACATACTGACG+TGG | 0.682664 | 8.4:-3646446 | None:intergenic |
| AACTTGATGATGAGTCTCGG+AGG | 0.694599 | 8.4:-3646291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCTAAATGAATAAAAA+AGG | - | chr8.4:3649626-3649645 | None:intergenic | 10.0% |
| !! | AAAAAACAATCACATTAATT+GGG | - | chr8.4:3646818-3646837 | None:intergenic | 15.0% |
| !! | AAGATAACAAAGAAATTATT+TGG | - | chr8.4:3646686-3646705 | None:intergenic | 15.0% |
| !! | ATATTATCTTCAAATTTCAT+AGG | + | chr8.4:3648870-3648889 | MS.gene012540:intron | 15.0% |
| !! | ATGTTAATTGTACTAAATAT+AGG | - | chr8.4:3647695-3647714 | None:intergenic | 15.0% |
| !! | GATAAAAAATATTGAGAAAA+AGG | - | chr8.4:3649516-3649535 | None:intergenic | 15.0% |
| !! | TAAATCAAATGATAGTTATT+GGG | + | chr8.4:3648707-3648726 | MS.gene012540:intron | 15.0% |
| !! | TTAAATCAAATGATAGTTAT+TGG | + | chr8.4:3648706-3648725 | MS.gene012540:intron | 15.0% |
| !! | TTATTATTATAATGAAGAGA+AGG | - | chr8.4:3646503-3646522 | None:intergenic | 15.0% |
| !!! | ATAAATTCTAAGAAAATAGA+AGG | - | chr8.4:3647051-3647070 | None:intergenic | 15.0% |
| !!! | TGTTTGAATTTTAAATTTAG+CGG | - | chr8.4:3647665-3647684 | None:intergenic | 15.0% |
| !!! | TTTTATATGTTTCAATGTAT+GGG | + | chr8.4:3646730-3646749 | MS.gene012540:intron | 15.0% |
| !! | AATTCCAAAACCAAAATTTA+TGG | - | chr8.4:3647244-3647263 | None:intergenic | 20.0% |
| !! | AGTCAAGAATTATAAATTGT+AGG | + | chr8.4:3648982-3649001 | MS.gene012540:intron | 20.0% |
| !! | ATAACAATTATCCTTTATCA+GGG | + | chr8.4:3648121-3648140 | MS.gene012540:intron | 20.0% |
| !! | ATTGTTAGAAAATTGTTATC+TGG | + | chr8.4:3646606-3646625 | MS.gene012540:CDS | 20.0% |
| !! | CCAGAAATTTATAATTAGAT+CGG | - | chr8.4:3649198-3649217 | None:intergenic | 20.0% |
| !! | CCATTATCTTTCATAAATTT+AGG | - | chr8.4:3648535-3648554 | None:intergenic | 20.0% |
| !! | CCTAAATTTATGAAAGATAA+TGG | + | chr8.4:3648532-3648551 | MS.gene012540:CDS | 20.0% |
| !! | GAAAAAACAATCACATTAAT+TGG | - | chr8.4:3646819-3646838 | None:intergenic | 20.0% |
| !! | TATAACAATTATCCTTTATC+AGG | + | chr8.4:3648120-3648139 | MS.gene012540:intron | 20.0% |
| !! | TGAAAGATATAATAAGCTTT+AGG | + | chr8.4:3649041-3649060 | MS.gene012540:intron | 20.0% |
| !!! | AATCGTTTTCTATAGAAAAA+AGG | + | chr8.4:3647538-3647557 | MS.gene012540:intron | 20.0% |
| !!! | AATTTCTTTGTTATCTTTTC+TGG | + | chr8.4:3646689-3646708 | MS.gene012540:intron | 20.0% |
| !!! | AATTTTCTAACAATGTCTTT+GGG | - | chr8.4:3646600-3646619 | None:intergenic | 20.0% |
| !!! | ATTAATGTGATTGTTTTTTC+CGG | + | chr8.4:3646819-3646838 | MS.gene012540:intron | 20.0% |
| !!! | ATTTCTTTGTTATCTTTTCT+GGG | + | chr8.4:3646690-3646709 | MS.gene012540:intron | 20.0% |
| !!! | CTTTTATATGTTTCAATGTA+TGG | + | chr8.4:3646729-3646748 | MS.gene012540:intron | 20.0% |
| !!! | GATAAAAATATTGATTCTCA+TGG | - | chr8.4:3648099-3648118 | None:intergenic | 20.0% |
| !!! | GTTTGAATTTTAAATTTAGC+GGG | - | chr8.4:3647664-3647683 | None:intergenic | 20.0% |
| !!! | TTTTCAAATATTCCATATTG+CGG | - | chr8.4:3648314-3648333 | None:intergenic | 20.0% |
| !!! | TTTTGCTTATCATATTCATA+TGG | + | chr8.4:3650750-3650769 | MS.gene012540:intron | 20.0% |
| ! | AAACAGGGAAATATCTTATA+CGG | - | chr8.4:3649492-3649511 | None:intergenic | 25.0% |
| ! | AAATGATAGTTATTGGGATT+TGG | + | chr8.4:3648713-3648732 | MS.gene012540:intron | 25.0% |
| ! | AAATTCTTTCAAATTTCGGA+GGG | - | chr8.4:3647272-3647291 | None:intergenic | 25.0% |
| ! | AATAACTTGAAGGAAATTGA+AGG | + | chr8.4:3649725-3649744 | MS.gene012540:CDS | 25.0% |
| ! | AGCATTGTTTGAGTAAATTA+AGG | + | chr8.4:3649152-3649171 | MS.gene012540:intron | 25.0% |
| ! | ATAGCTTAATACACTAATCA+TGG | + | chr8.4:3648782-3648801 | MS.gene012540:intron | 25.0% |
| ! | ATATTGAGAAAAAGGTAAAC+AGG | - | chr8.4:3649508-3649527 | None:intergenic | 25.0% |
| ! | ATTAATTAACCTGAGGAATT+TGG | - | chr8.4:3646466-3646485 | None:intergenic | 25.0% |
| ! | CCACAAATTCTTTCAAATTT+CGG | - | chr8.4:3647276-3647295 | None:intergenic | 25.0% |
| ! | CCGATCTAATTATAAATTTC+TGG | + | chr8.4:3649195-3649214 | MS.gene012540:intron | 25.0% |
| ! | GATACAAAATTACTAGGAAA+GGG | + | chr8.4:3646871-3646890 | MS.gene012540:intron | 25.0% |
| ! | GCAAATGATACAAAATTACT+AGG | + | chr8.4:3646865-3646884 | MS.gene012540:intron | 25.0% |
| ! | GTAAGTAATTAATTAACCTG+AGG | - | chr8.4:3646473-3646492 | None:intergenic | 25.0% |
| ! | GTTGAAAGAAAATAACTTGA+AGG | + | chr8.4:3649715-3649734 | MS.gene012540:CDS | 25.0% |
| ! | TAAATGTGAATCACATACAT+AGG | - | chr8.4:3648414-3648433 | None:intergenic | 25.0% |
| ! | TAGGAAAAAGAAATTAGACA+CGG | + | chr8.4:3650596-3650615 | MS.gene012540:intron | 25.0% |
| ! | TATGATAAGCAAAAATTGAG+AGG | - | chr8.4:3650744-3650763 | None:intergenic | 25.0% |
| ! | TATTGAGAAAAAGGTAAACA+GGG | - | chr8.4:3649507-3649526 | None:intergenic | 25.0% |
| ! | TGAAAATGTAAATTCACTAG+AGG | + | chr8.4:3648328-3648347 | MS.gene012540:CDS | 25.0% |
| ! | TGATACAAAATTACTAGGAA+AGG | + | chr8.4:3646870-3646889 | MS.gene012540:intron | 25.0% |
| ! | TTAATTAACCTGAGGAATTT+GGG | - | chr8.4:3646465-3646484 | None:intergenic | 25.0% |
| !! | CAATTTTCTAACAATGTCTT+TGG | - | chr8.4:3646601-3646620 | None:intergenic | 25.0% |
| !! | TGTCTTTTCTCTATTTAGAT+GGG | + | chr8.4:3649650-3649669 | MS.gene012540:intron | 25.0% |
| !! | TTGTCTTTTCTCTATTTAGA+TGG | + | chr8.4:3649649-3649668 | MS.gene012540:intron | 25.0% |
| !! | TTTAGAATCTGAAAACATAC+AGG | - | chr8.4:3648647-3648666 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAAGTTTTATCTG+TGG | + | chr8.4:3648438-3648457 | MS.gene012540:intron | 25.0% |
| !!! | ATTCTCATACCTATTTCTTT+TGG | + | chr8.4:3650903-3650922 | MS.gene012540:intron | 25.0% |
| !!! | CATGGTTATCTTTGATTTTT+GGG | - | chr8.4:3648826-3648845 | None:intergenic | 25.0% |
| !!! | TGATCTGCTGTTTTTTTAAA+AGG | + | chr8.4:3649806-3649825 | MS.gene012540:intron | 25.0% |
| AAAAAAGGAATAGCATATCC+CGG | + | chr8.4:3647553-3647572 | MS.gene012540:intron | 30.0% | |
| AAATCAAGAATCCATACAAC+TGG | - | chr8.4:3650650-3650669 | None:intergenic | 30.0% | |
| AACATTCCCAAAAAAATGCA+GGG | - | chr8.4:3647127-3647146 | None:intergenic | 30.0% | |
| AAGTTGGCATAATGGTTAAT+AGG | - | chr8.4:3647616-3647635 | None:intergenic | 30.0% | |
| AATAGAGAGGTAAACGAATT+TGG | - | chr8.4:3646253-3646272 | None:intergenic | 30.0% | |
| AATTCTTTCAAATTTCGGAG+GGG | - | chr8.4:3647271-3647290 | None:intergenic | 30.0% | |
| ACAAAGAAATTATTTGGACC+TGG | - | chr8.4:3646680-3646699 | None:intergenic | 30.0% | |
| ACAAAGAGAAAGGAAAAAAC+TGG | - | chr8.4:3650079-3650098 | None:intergenic | 30.0% | |
| ACAATCACATTAATTGGGAA+CGG | - | chr8.4:3646813-3646832 | None:intergenic | 30.0% | |
| AGAAAATGGAACAAAGAGAA+AGG | - | chr8.4:3650089-3650108 | None:intergenic | 30.0% | |
| AGAATAAACCACCTTGAAAT+TGG | + | chr8.4:3647410-3647429 | MS.gene012540:intron | 30.0% | |
| AGGAAAAAGAAATTAGACAC+GGG | + | chr8.4:3650597-3650616 | MS.gene012540:intron | 30.0% | |
| AGTTTCCTCGTCAAAAATAT+AGG | - | chr8.4:3650982-3651001 | None:intergenic | 30.0% | |
| ATTATAATGAAGAGAAGGTG+AGG | - | chr8.4:3646498-3646517 | None:intergenic | 30.0% | |
| ATTCAGATATTTGGTATTGC+AGG | - | chr8.4:3647358-3647377 | None:intergenic | 30.0% | |
| CAAACAATGCTACTAAAATC+AGG | - | chr8.4:3649143-3649162 | None:intergenic | 30.0% | |
| CAAATTCTTTCAAATTTCGG+AGG | - | chr8.4:3647273-3647292 | None:intergenic | 30.0% | |
| CAAGCATGACTATAAGTTAT+TGG | + | chr8.4:3650715-3650734 | MS.gene012540:intron | 30.0% | |
| CACAAAACAATGAAATCGAT+AGG | - | chr8.4:3648253-3648272 | None:intergenic | 30.0% | |
| CCGAAATTTGAAAGAATTTG+TGG | + | chr8.4:3647273-3647292 | MS.gene012540:intron | 30.0% | |
| GAAATATCTTATACGGAAAG+AGG | - | chr8.4:3649485-3649504 | None:intergenic | 30.0% | |
| GAATAAACCACCTTGAAATT+GGG | + | chr8.4:3647411-3647430 | MS.gene012540:intron | 30.0% | |
| TCGGATTTAGCATTAGAAAA+TGG | - | chr8.4:3650103-3650122 | None:intergenic | 30.0% | |
| TCGTCAAAAATATAGGTCAA+GGG | - | chr8.4:3650975-3650994 | None:intergenic | 30.0% | |
| TGAATGTAGCCAAAAGAAAT+AGG | - | chr8.4:3650915-3650934 | None:intergenic | 30.0% | |
| TGCTTCTCTGAATAAATTGA+AGG | - | chr8.4:3646950-3646969 | None:intergenic | 30.0% | |
| TTCAGATATTTGGTATTGCA+GGG | - | chr8.4:3647357-3647376 | None:intergenic | 30.0% | |
| TTTCTATAAGCATGTGAAGA+TGG | + | chr8.4:3650551-3650570 | MS.gene012540:intron | 30.0% | |
| ! | AGATAATGGTATTAAGCATG+TGG | + | chr8.4:3648546-3648565 | MS.gene012540:CDS | 30.0% |
| ! | CAACTAGAGTCCATAAATTT+TGG | + | chr8.4:3647231-3647250 | MS.gene012540:intron | 30.0% |
| ! | CTGATAATTGAACACTTTTC+AGG | + | chr8.4:3649904-3649923 | MS.gene012540:intron | 30.0% |
| ! | CTTTTACCTGTGGTTAAATT+GGG | - | chr8.4:3647104-3647123 | None:intergenic | 30.0% |
| ! | GTCTTTTCTCTATTTAGATG+GGG | + | chr8.4:3649651-3649670 | MS.gene012540:intron | 30.0% |
| ! | TTTTACCTGTGGTTAAATTG+GGG | - | chr8.4:3647103-3647122 | None:intergenic | 30.0% |
| !! | GAAATGAAGCTATTTCTACT+AGG | - | chr8.4:3647080-3647099 | None:intergenic | 30.0% |
| !! | GCATGGTTATCTTTGATTTT+TGG | - | chr8.4:3648827-3648846 | None:intergenic | 30.0% |
| !! | TATATGTGACTTGTTACTGA+TGG | + | chr8.4:3647184-3647203 | MS.gene012540:intron | 30.0% |
| !! | TTCTTTGAAACATCTATCTC+TGG | + | chr8.4:3647870-3647889 | MS.gene012540:intron | 30.0% |
| !!! | ATCGAATTGCAGTTAGTTTT+AGG | - | chr8.4:3647586-3647605 | None:intergenic | 30.0% |
| !!! | CTCTTTTTTTCTGGTTTATG+TGG | + | chr8.4:3649288-3649307 | MS.gene012540:intron | 30.0% |
| !!! | GAGTCCATAAATTTTGGTTT+TGG | + | chr8.4:3647237-3647256 | MS.gene012540:intron | 30.0% |
| !!! | TAAAAGCCCTGCATTTTTTT+GGG | + | chr8.4:3647118-3647137 | MS.gene012540:intron | 30.0% |
| !!! | TTTTTTCTGGTTTATGTGGA+GGG | + | chr8.4:3649292-3649311 | MS.gene012540:intron | 30.0% |
| !!! | TTTTTTGTGTGAAGAAGTTC+TGG | + | chr8.4:3649250-3649269 | MS.gene012540:intron | 30.0% |
| !!! | TTTTTTTCTGGTTTATGTGG+AGG | + | chr8.4:3649291-3649310 | MS.gene012540:intron | 30.0% |
| AAAAGCAAAGTTGCATGATC+AGG | - | chr8.4:3648034-3648053 | None:intergenic | 35.0% | |
| AAAAGGTCATCTCCAACATA+TGG | - | chr8.4:3649609-3649628 | None:intergenic | 35.0% | |
| AAACCATGATAAGCTTCAAG+TGG | - | chr8.4:3647495-3647514 | None:intergenic | 35.0% | |
| AAAGCAAAGTTGCATGATCA+GGG | - | chr8.4:3648033-3648052 | None:intergenic | 35.0% | |
| AAATCATTGATCGGACGAAA+AGG | + | chr8.4:3649947-3649966 | MS.gene012540:CDS | 35.0% | |
| AACTACAACAACAACAACCA+AGG | + | chr8.4:3650779-3650798 | MS.gene012540:intron | 35.0% | |
| AACTTGAAGGAAATTGAAGG+TGG | + | chr8.4:3649728-3649747 | MS.gene012540:CDS | 35.0% | |
| ACAATTGACAATCCTTGAGA+AGG | - | chr8.4:3646409-3646428 | None:intergenic | 35.0% | |
| AGATTTCAAACTTGGAAGTC+TGG | + | chr8.4:3646565-3646584 | MS.gene012540:intron | 35.0% | |
| AGGGCATACAAAAAAGATTG+TGG | - | chr8.4:3648014-3648033 | None:intergenic | 35.0% | |
| ATATGATACTGCTGCTAATG+CGG | - | chr8.4:3647018-3647037 | None:intergenic | 35.0% | |
| ATCCTCCCCTAAAATGAATT+AGG | - | chr8.4:3650241-3650260 | None:intergenic | 35.0% | |
| ATCGGACTTCTCAATTCAAT+GGG | - | chr8.4:3649180-3649199 | None:intergenic | 35.0% | |
| ATGCAAAGAAACCAGTTGTA+TGG | + | chr8.4:3650636-3650655 | MS.gene012540:intron | 35.0% | |
| ATTCTTTCAAATTTCGGAGG+GGG | - | chr8.4:3647270-3647289 | None:intergenic | 35.0% | |
| CAAAGAAGACTGTGAAGAAA+CGG | - | chr8.4:3646992-3647011 | None:intergenic | 35.0% | |
| CAAGGGAGACTCTTAAAATT+AGG | - | chr8.4:3650356-3650375 | None:intergenic | 35.0% | |
| CAATTGCAGAACAATGTTCT+GGG | + | chr8.4:3648069-3648088 | MS.gene012540:intron | 35.0% | |
| CAGTAACAAGTCACATATAG+AGG | - | chr8.4:3647183-3647202 | None:intergenic | 35.0% | |
| CTCGATATACTCACTGAATT+TGG | + | chr8.4:3646654-3646673 | MS.gene012540:CDS | 35.0% | |
| CTCGTCAAAAATATAGGTCA+AGG | - | chr8.4:3650976-3650995 | None:intergenic | 35.0% | |
| GAACATTCCCAAAAAAATGC+AGG | - | chr8.4:3647128-3647147 | None:intergenic | 35.0% | |
| GAAGATACATTCTACCTTGT+TGG | + | chr8.4:3648903-3648922 | MS.gene012540:intron | 35.0% | |
| GAGACTCTTAAAATTAGGAG+TGG | - | chr8.4:3650351-3650370 | None:intergenic | 35.0% | |
| GAGTGAAACTAAAAACGACA+AGG | - | chr8.4:3649885-3649904 | None:intergenic | 35.0% | |
| GATAGTTATTGGGATTTGGA+AGG | + | chr8.4:3648717-3648736 | MS.gene012540:intron | 35.0% | |
| GATCTTGATCTTGGTATTGT+CGG | + | chr8.4:3646630-3646649 | MS.gene012540:CDS | 35.0% | |
| GCAGAAAGCAAATACAGAAA+GGG | - | chr8.4:3650269-3650288 | None:intergenic | 35.0% | |
| GTGAGGCAAATTCAGATATT+TGG | - | chr8.4:3647367-3647386 | None:intergenic | 35.0% | |
| TAACAATGTCTTTGGGTCTT+TGG | - | chr8.4:3646593-3646612 | None:intergenic | 35.0% | |
| TACACTGCAGATTTCAAACT+TGG | + | chr8.4:3646557-3646576 | MS.gene012540:intron | 35.0% | |
| TACATTCATGTGATGCAGAT+TGG | + | chr8.4:3650927-3650946 | MS.gene012540:intron | 35.0% | |
| TAGCCACAAATTAACCAACA+AGG | - | chr8.4:3648920-3648939 | None:intergenic | 35.0% | |
| TCCGGTGAGAAAATATAGAT+GGG | - | chr8.4:3649081-3649100 | None:intergenic | 35.0% | |
| TCCTCCCCTAAAATGAATTA+GGG | - | chr8.4:3650240-3650259 | None:intergenic | 35.0% | |
| TGAGATGCTTGAAAGATTAG+AGG | + | chr8.4:3649988-3650007 | MS.gene012540:CDS | 35.0% | |
| TGCAGAAAGCAAATACAGAA+AGG | - | chr8.4:3650270-3650289 | None:intergenic | 35.0% | |
| TGTGAATAGTCACTACTTAC+TGG | - | chr8.4:3647750-3647769 | None:intergenic | 35.0% | |
| TTATCTGGAGATCTTGATCT+TGG | + | chr8.4:3646621-3646640 | MS.gene012540:CDS | 35.0% | |
| TTCCGGTGAGAAAATATAGA+TGG | - | chr8.4:3649082-3649101 | None:intergenic | 35.0% | |
| TTGTTTCAGATTCCGCAATA+TGG | + | chr8.4:3648299-3648318 | MS.gene012540:intron | 35.0% | |
| TTTACCTGTGGTTAAATTGG+GGG | - | chr8.4:3647102-3647121 | None:intergenic | 35.0% | |
| TTTCAGCCGTTAGACATTAA+CGG | - | chr8.4:3648849-3648868 | None:intergenic | 35.0% | |
| TTTCTAATGCTAAATCCGAC+AGG | + | chr8.4:3650104-3650123 | MS.gene012540:intron | 35.0% | |
| ! | AATTGAAGGTGGAACTGTTT+TGG | + | chr8.4:3649739-3649758 | MS.gene012540:CDS | 35.0% |
| ! | ATGTTTCAATGTATGGGCTA+AGG | + | chr8.4:3646736-3646755 | MS.gene012540:intron | 35.0% |
| ! | CCAACCCTAATTCATTTTAG+GGG | + | chr8.4:3650233-3650252 | MS.gene012540:intron | 35.0% |
| ! | CTACCTTGTTGGTTAATTTG+TGG | + | chr8.4:3648914-3648933 | MS.gene012540:intron | 35.0% |
| ! | GATGGTGAAGCAATTTTCAT+CGG | + | chr8.4:3647202-3647221 | MS.gene012540:intron | 35.0% |
| ! | GCTTTTACCTGTGGTTAAAT+TGG | - | chr8.4:3647105-3647124 | None:intergenic | 35.0% |
| ! | TCCCATCTATATTTTCTCAC+CGG | + | chr8.4:3649077-3649096 | MS.gene012540:intron | 35.0% |
| ! | TGAGTCTGTGTTTTACGATT+GGG | + | chr8.4:3649331-3649350 | MS.gene012540:intron | 35.0% |
| ! | TGATTGTCGTTTATCCATTG+CGG | + | chr8.4:3648186-3648205 | MS.gene012540:CDS | 35.0% |
| ! | TGTTTCAATGTATGGGCTAA+GGG | + | chr8.4:3646737-3646756 | MS.gene012540:intron | 35.0% |
| ! | TTGAGTCTGTGTTTTACGAT+TGG | + | chr8.4:3649330-3649349 | MS.gene012540:intron | 35.0% |
| !! | AAGAACTTGATGATGAGTCT+CGG | - | chr8.4:3646297-3646316 | None:intergenic | 35.0% |
| !! | CTTGACCTATATTTTTGACG+AGG | + | chr8.4:3650974-3650993 | MS.gene012540:CDS | 35.0% |
| !!! | GTAAAAGCCCTGCATTTTTT+TGG | + | chr8.4:3647117-3647136 | MS.gene012540:intron | 35.0% |
| !!! | TTTTTCTGGTTTATGTGGAG+GGG | + | chr8.4:3649293-3649312 | MS.gene012540:intron | 35.0% |
| AACAGCAGATCATGCTAGTT+AGG | - | chr8.4:3649798-3649817 | None:intergenic | 40.0% | |
| AAGATGGTTGTGAGCTAATG+GGG | + | chr8.4:3650567-3650586 | MS.gene012540:intron | 40.0% | |
| AAGGTGGTTTATTCTTCGTG+TGG | - | chr8.4:3647405-3647424 | None:intergenic | 40.0% | |
| AATCTTCCGATGCTTTGACA+AGG | + | chr8.4:3647461-3647480 | MS.gene012540:intron | 40.0% | |
| AATGACAACACAATCTCCTC+CGG | + | chr8.4:3646317-3646336 | MS.gene012540:CDS | 40.0% | |
| ACAGCAGATCATGCTAGTTA+GGG | - | chr8.4:3649797-3649816 | None:intergenic | 40.0% | |
| ACATCTATCTCTGGTCATCA+TGG | + | chr8.4:3647879-3647898 | MS.gene012540:intron | 40.0% | |
| ACATGGCACATAAAGCTTTC+CGG | - | chr8.4:3649099-3649118 | None:intergenic | 40.0% | |
| ACCATGCCGTTAATGTCTAA+CGG | + | chr8.4:3648840-3648859 | MS.gene012540:intron | 40.0% | |
| ACGACTAGCATCCTCAATTT+CGG | - | chr8.4:3647812-3647831 | None:intergenic | 40.0% | |
| ACGTTGTTCCACTACTTACA+AGG | - | chr8.4:3649697-3649716 | None:intergenic | 40.0% | |
| ACTCCACTTGAAGCTTATCA+TGG | + | chr8.4:3647489-3647508 | MS.gene012540:intron | 40.0% | |
| AGAAGACATACGACCTTTAC+TGG | - | chr8.4:3646375-3646394 | None:intergenic | 40.0% | |
| AGCTAGCAAAAATGCCTCAA+TGG | + | chr8.4:3648351-3648370 | MS.gene012540:CDS | 40.0% | |
| ATCTTGGACCTTGTAAGTAG+TGG | + | chr8.4:3649686-3649705 | MS.gene012540:CDS | 40.0% | |
| ATTAGACACGGGTGTTTGAA+TGG | + | chr8.4:3650608-3650627 | MS.gene012540:intron | 40.0% | |
| ATTCATGTGATGCAGATTGG+AGG | + | chr8.4:3650930-3650949 | MS.gene012540:intron | 40.0% | |
| ATTTCCCCCAATTTAACCAC+AGG | + | chr8.4:3647095-3647114 | MS.gene012540:intron | 40.0% | |
| CAGAAAACAGGACTTACTGT+GGG | - | chr8.4:3650397-3650416 | None:intergenic | 40.0% | |
| CATCGGAAGATTCATGTTTG+CGG | - | chr8.4:3647453-3647472 | None:intergenic | 40.0% | |
| CCCCTAAAATGAATTAGGGT+TGG | - | chr8.4:3650236-3650255 | None:intergenic | 40.0% | |
| CCCTGTAGATAGACAATCAA+GGG | - | chr8.4:3650373-3650392 | None:intergenic | 40.0% | |
| CCCTTGATTGTCTATCTACA+GGG | + | chr8.4:3650370-3650389 | MS.gene012540:intron | 40.0% | |
| CTACTCACTATCACAATGCA+TGG | - | chr8.4:3650312-3650331 | None:intergenic | 40.0% | |
| GAAGACATACGACCTTTACT+GGG | - | chr8.4:3646374-3646393 | None:intergenic | 40.0% | |
| GAAGATGGTTGTGAGCTAAT+GGG | + | chr8.4:3650566-3650585 | MS.gene012540:intron | 40.0% | |
| GAAGATTCATGTTTGCGGTT+GGG | - | chr8.4:3647448-3647467 | None:intergenic | 40.0% | |
| GAGAAAGGAAAAAACTGGTG+AGG | - | chr8.4:3650074-3650093 | None:intergenic | 40.0% | |
| GATCGGACTTCTCAATTCAA+TGG | - | chr8.4:3649181-3649200 | None:intergenic | 40.0% | |
| GATCTTCATTGCCCTGATAA+AGG | - | chr8.4:3648135-3648154 | None:intergenic | 40.0% | |
| GCAAGCAGGAAATCATTGAT+CGG | + | chr8.4:3649938-3649957 | MS.gene012540:CDS | 40.0% | |
| GCAATTGCAGAACAATGTTC+TGG | + | chr8.4:3648068-3648087 | MS.gene012540:intron | 40.0% | |
| GTAATTTCAACTCACCGCAA+TGG | - | chr8.4:3648203-3648222 | None:intergenic | 40.0% | |
| GTCAGCTCCTTTCTAAACTT+GGG | + | chr8.4:3651012-3651031 | MS.gene012540:CDS | 40.0% | |
| TATACTCACTGAATTTGGCC+AGG | + | chr8.4:3646659-3646678 | MS.gene012540:CDS | 40.0% | |
| TCACTAAGAGCAGAGTTCAA+TGG | - | chr8.4:3649372-3649391 | None:intergenic | 40.0% | |
| TCCCTGTAGATAGACAATCA+AGG | - | chr8.4:3650374-3650393 | None:intergenic | 40.0% | |
| TCCCTTGATTGTCTATCTAC+AGG | + | chr8.4:3650369-3650388 | MS.gene012540:intron | 40.0% | |
| TCGGACTTCTCAATTCAATG+GGG | - | chr8.4:3649179-3649198 | None:intergenic | 40.0% | |
| TGAAGATGGTTGTGAGCTAA+TGG | + | chr8.4:3650565-3650584 | MS.gene012540:intron | 40.0% | |
| TGCAATTGCATTTAAGCCGA+GGG | - | chr8.4:3648057-3648076 | None:intergenic | 40.0% | |
| TTAGACACGGGTGTTTGAAT+GGG | + | chr8.4:3650609-3650628 | MS.gene012540:intron | 40.0% | |
| TTCCTTCTTACTCTTCAGCT+GGG | + | chr8.4:3648508-3648527 | MS.gene012540:intron | 40.0% | |
| TTGTCAATTGTCAGTCAAGC+AGG | + | chr8.4:3646418-3646437 | MS.gene012540:CDS | 40.0% | |
| TTTCCTTCTTACTCTTCAGC+TGG | + | chr8.4:3648507-3648526 | MS.gene012540:intron | 40.0% | |
| ! | AAAGATTAGAGGCACATCTG+AGG | + | chr8.4:3649999-3650018 | MS.gene012540:CDS | 40.0% |
| ! | AAGATTAGAGGCACATCTGA+GGG | + | chr8.4:3650000-3650019 | MS.gene012540:CDS | 40.0% |
| ! | AATGTTTGATGTCGCTTCAC+TGG | - | chr8.4:3647641-3647660 | None:intergenic | 40.0% |
| ! | ATGTTTGATGTCGCTTCACT+GGG | - | chr8.4:3647640-3647659 | None:intergenic | 40.0% |
| ! | ATTGCGGAATCTGAAACAAC+AGG | - | chr8.4:3648298-3648317 | None:intergenic | 40.0% |
| ! | GTTTCAATGTATGGGCTAAG+GGG | + | chr8.4:3646738-3646757 | MS.gene012540:intron | 40.0% |
| ! | TCATGTTTGCTACAACCTGT+CGG | - | chr8.4:3650122-3650141 | None:intergenic | 40.0% |
| ! | TTGCGGAATCTGAAACAACA+GGG | - | chr8.4:3648297-3648316 | None:intergenic | 40.0% |
| !! | ACCCTAATTCATTTTAGGGG+AGG | + | chr8.4:3650236-3650255 | MS.gene012540:intron | 40.0% |
| !! | ATGCAACTTTGCTTTTCCCT+CGG | + | chr8.4:3648038-3648057 | MS.gene012540:intron | 40.0% |
| !! | GTGAAGAAGTTCTGGTTTCT+TGG | + | chr8.4:3649258-3649277 | MS.gene012540:intron | 40.0% |
| !!! | CTGTTTTTTTAAAAGGCGCC+TGG | + | chr8.4:3649813-3649832 | MS.gene012540:intron | 40.0% |
| !!! | GGCATTGTGCTCTTTTTTTC+TGG | + | chr8.4:3649279-3649298 | MS.gene012540:intron | 40.0% |
| !!! | GTTAGTTTTAGGTGCAGAAC+CGG | - | chr8.4:3647575-3647594 | None:intergenic | 40.0% |
| !!! | TGGAACTGTTTTGGAAAGTC+AGG | + | chr8.4:3649748-3649767 | MS.gene012540:CDS | 40.0% |
| !!! | TTAGTTTTAGGTGCAGAACC+GGG | - | chr8.4:3647574-3647593 | None:intergenic | 40.0% |
| !!! | TTTTCTGGTTTATGTGGAGG+GGG | + | chr8.4:3649294-3649313 | MS.gene012540:intron | 40.0% |
| AAAAAACTGGTGAGGAGACG+AGG | - | chr8.4:3650066-3650085 | None:intergenic | 45.0% | |
| AAGGCTTATCCCACTAAGTG+GGG | + | chr8.4:3650798-3650817 | MS.gene012540:intron | 45.0% | |
| AGAAGACAAGAGATCCGTCT+GGG | + | chr8.4:3646344-3646363 | MS.gene012540:CDS | 45.0% | |
| AGACTTGTACAGTGCCTTCT+TGG | - | chr8.4:3650473-3650492 | None:intergenic | 45.0% | |
| AGATCTTATCGTTGTCCACG+AGG | + | chr8.4:3648150-3648169 | MS.gene012540:CDS | 45.0% | |
| AGTCATATGTGTGCCCAAGA+AGG | + | chr8.4:3650456-3650475 | MS.gene012540:CDS | 45.0% | |
| ATTTGGGCAACATACTGACG+TGG | - | chr8.4:3646449-3646468 | None:intergenic | 45.0% | |
| CAAACACTATCTCTTACCGC+AGG | - | chr8.4:3648607-3648626 | None:intergenic | 45.0% | |
| CAAGGCTTATCCCACTAAGT+GGG | + | chr8.4:3650797-3650816 | MS.gene012540:intron | 45.0% | |
| CACTGGGAAAGTTGGCATAA+TGG | - | chr8.4:3647624-3647643 | None:intergenic | 45.0% | |
| CAGCATCAATGAGATGGTGA+CGG | - | chr8.4:3649583-3649602 | None:intergenic | 45.0% | |
| CAGGTTGTAGCAAACATGAG+AGG | + | chr8.4:3650123-3650142 | MS.gene012540:intron | 45.0% | |
| CGTCAGCTCCTTTCTAAACT+TGG | + | chr8.4:3651011-3651030 | MS.gene012540:CDS | 45.0% | |
| CTAGAGGTCTCCCAATTTCA+AGG | - | chr8.4:3647424-3647443 | None:intergenic | 45.0% | |
| CTCTGATGAGTCCGAAATTG+AGG | + | chr8.4:3647798-3647817 | MS.gene012540:intron | 45.0% | |
| CTGCAATTGCATTTAAGCCG+AGG | - | chr8.4:3648058-3648077 | None:intergenic | 45.0% | |
| CTTGGGCACACATATGACTA+TGG | - | chr8.4:3650455-3650474 | None:intergenic | 45.0% | |
| CTTTACTGGGTAAACCCAGA+CGG | - | chr8.4:3646361-3646380 | None:intergenic | 45.0% | |
| GAAGGAGGAGATTCATAGCA+GGG | + | chr8.4:3646760-3646779 | MS.gene012540:intron | 45.0% | |
| GACTTGTACAGTGCCTTCTT+GGG | - | chr8.4:3650472-3650491 | None:intergenic | 45.0% | |
| GCAGAAAACAGGACTTACTG+TGG | - | chr8.4:3650398-3650417 | None:intergenic | 45.0% | |
| GCTTTATGTGCCATGTTGAC+CGG | + | chr8.4:3649103-3649122 | MS.gene012540:intron | 45.0% | |
| GGAAGATTCATGTTTGCGGT+TGG | - | chr8.4:3647449-3647468 | None:intergenic | 45.0% | |
| GGCTTATCTTCTGTCCATTG+AGG | - | chr8.4:3648368-3648387 | None:intergenic | 45.0% | |
| GGTTTCGAGCTAAGATAGTG+AGG | - | chr8.4:3647384-3647403 | None:intergenic | 45.0% | |
| GTATGTTGCCCAAATTCCTC+AGG | + | chr8.4:3646454-3646473 | MS.gene012540:CDS | 45.0% | |
| GTCTATACAGCAACTGAGAG+CGG | + | chr8.4:3650489-3650508 | MS.gene012540:CDS | 45.0% | |
| GTGAAGAAACGGAAACGAGA+AGG | - | chr8.4:3646981-3647000 | None:intergenic | 45.0% | |
| TACATAGCCTACGCTACATG+TGG | + | chr8.4:3646843-3646862 | MS.gene012540:intron | 45.0% | |
| TCAGGAACGTTCACAAATGC+CGG | - | chr8.4:3649125-3649144 | None:intergenic | 45.0% | |
| TCATTTGCCACATGTAGCGT+AGG | - | chr8.4:3646853-3646872 | None:intergenic | 45.0% | |
| TGAGCTAATGGGGCTAACTT+AGG | + | chr8.4:3650577-3650596 | MS.gene012540:intron | 45.0% | |
| TGATACACTCGACCTTCTCA+AGG | + | chr8.4:3646394-3646413 | MS.gene012540:CDS | 45.0% | |
| TGTAGCGTAGGCTATGTAAC+CGG | - | chr8.4:3646841-3646860 | None:intergenic | 45.0% | |
| TTACCGCCTTGTCAAAGCAT+CGG | - | chr8.4:3647470-3647489 | None:intergenic | 45.0% | |
| TTCACAAATGCCGGTCAACA+TGG | - | chr8.4:3649116-3649135 | None:intergenic | 45.0% | |
| TTGACGAGGAAACTCCTAGA+TGG | + | chr8.4:3650988-3651007 | MS.gene012540:CDS | 45.0% | |
| TTGATGCTGCTGCCATATGT+TGG | + | chr8.4:3649594-3649613 | MS.gene012540:intron | 45.0% | |
| TTGTGTGCTTTAGCCCTGAT+CGG | + | chr8.4:3647938-3647957 | MS.gene012540:intron | 45.0% | |
| ! | AAATGCAGGGCTTTTACCTG+TGG | - | chr8.4:3647114-3647133 | None:intergenic | 45.0% |
| ! | CACTACTTACTGGTCTCAGT+AGG | - | chr8.4:3647740-3647759 | None:intergenic | 45.0% |
| ! | CATGAGAAGCAGCATTTTCC+AGG | - | chr8.4:3649834-3649853 | None:intergenic | 45.0% |
| ! | GGCTATAGTATCTGAGACGT+CGG | - | chr8.4:3647162-3647181 | None:intergenic | 45.0% |
| ! | TGCGGAATCTGAAACAACAG+GGG | - | chr8.4:3648296-3648315 | None:intergenic | 45.0% |
| ! | TGCTGCTTCTCATGTCTTGT+TGG | + | chr8.4:3649840-3649859 | MS.gene012540:intron | 45.0% |
| ! | TGTTTTACGATTGGGTCCCA+AGG | + | chr8.4:3649339-3649358 | MS.gene012540:intron | 45.0% |
| !! | AACTTGATGATGAGTCTCGG+AGG | - | chr8.4:3646294-3646313 | None:intergenic | 45.0% |
| !! | TTTCTGGTTTATGTGGAGGG+GGG | + | chr8.4:3649295-3649314 | MS.gene012540:intron | 45.0% |
| AAGTGGGGTCGGCATTCAAA+TGG | + | chr8.4:3650813-3650832 | MS.gene012540:intron | 50.0% | |
| AATCCAGTTGCAACTCGCAG+AGG | - | chr8.4:3648389-3648408 | None:intergenic | 50.0% | |
| AGGAAGTAGTGCAGAGGAAG+TGG | + | chr8.4:3650143-3650162 | MS.gene012540:CDS | 50.0% | |
| AGTTCAATGGCAACAGGCCT+TGG | - | chr8.4:3649359-3649378 | None:intergenic | 50.0% | |
| ATGAGTCTCGGAGGAGATTG+AGG | - | chr8.4:3646285-3646304 | None:intergenic | 50.0% | |
| ATGTTTGCGGTTGGGTCTAG+AGG | - | chr8.4:3647440-3647459 | None:intergenic | 50.0% | |
| CAGAAGACAAGAGATCCGTC+TGG | + | chr8.4:3646343-3646362 | MS.gene012540:CDS | 50.0% | |
| CATGAGAGGAAGTAGTGCAG+AGG | + | chr8.4:3650137-3650156 | MS.gene012540:CDS | 50.0% | |
| CCAAGGCTTATCCCACTAAG+TGG | + | chr8.4:3650796-3650815 | MS.gene012540:intron | 50.0% | |
| CCACTTAGTGGGATAAGCCT+TGG | - | chr8.4:3650799-3650818 | None:intergenic | 50.0% | |
| CGTCTGGGTTTACCCAGTAA+AGG | + | chr8.4:3646359-3646378 | MS.gene012540:CDS | 50.0% | |
| CTGGGTTGCAGGTGTGATAT+GGG | + | chr8.4:3650196-3650215 | MS.gene012540:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8.4:3650802-3650821 | MS.gene012540:intron | 50.0% | |
| CTTCCGATGCTTTGACAAGG+CGG | + | chr8.4:3647464-3647483 | MS.gene012540:intron | 50.0% | |
| GACCCAGCTGAAGAGTAAGA+AGG | - | chr8.4:3648513-3648532 | None:intergenic | 50.0% | |
| GAGCAGAGTTCAATGGCAAC+AGG | - | chr8.4:3649365-3649384 | None:intergenic | 50.0% | |
| GAGGTCTCCCAATTTCAAGG+TGG | - | chr8.4:3647421-3647440 | None:intergenic | 50.0% | |
| GATCTCTTGTCTTCTGCTGC+CGG | - | chr8.4:3646339-3646358 | None:intergenic | 50.0% | |
| GCCGTTAGACATTAACGGCA+TGG | - | chr8.4:3648844-3648863 | None:intergenic | 50.0% | |
| GGAAGGAGGAGATTCATAGC+AGG | + | chr8.4:3646759-3646778 | MS.gene012540:intron | 50.0% | |
| GGGGATTGCTGATGCTATCT+TGG | + | chr8.4:3649670-3649689 | MS.gene012540:CDS | 50.0% | |
| GTTCAATGGCAACAGGCCTT+GGG | - | chr8.4:3649358-3649377 | None:intergenic | 50.0% | |
| TATCGTTGTCCACGAGGCTT+TGG | + | chr8.4:3648156-3648175 | MS.gene012540:CDS | 50.0% | |
| TGAGCCAACCATCGTTAGCT+GGG | + | chr8.4:3650178-3650197 | MS.gene012540:CDS | 50.0% | |
| TGGCAGCAGCATCAATGAGA+TGG | - | chr8.4:3649589-3649608 | None:intergenic | 50.0% | |
| TTCGGACTCATCAGAGCTGT+GGG | - | chr8.4:3647794-3647813 | None:intergenic | 50.0% | |
| TTTCGGACTCATCAGAGCTG+TGG | - | chr8.4:3647795-3647814 | None:intergenic | 50.0% | |
| TTTCTGCAAGCGCGATGGAA+AGG | + | chr8.4:3650411-3650430 | MS.gene012540:CDS | 50.0% | |
| ! | CAATGTATGGGCTAAGGGGA+AGG | + | chr8.4:3646742-3646761 | MS.gene012540:intron | 50.0% |
| ! | GTGGCATTTTCGACTGCTGA+CGG | + | chr8.4:3648565-3648584 | MS.gene012540:CDS | 50.0% |
| ! | TGTCGCTTCACTGGGAAAGT+TGG | - | chr8.4:3647632-3647651 | None:intergenic | 50.0% |
| AAGCCTCTGCGAGTTGCAAC+TGG | + | chr8.4:3648383-3648402 | MS.gene012540:CDS | 55.0% | |
| ACCATCGTTAGCTGGGTTGC+AGG | + | chr8.4:3650185-3650204 | MS.gene012540:CDS | 55.0% | |
| ACCTGCAACCCAGCTAACGA+TGG | - | chr8.4:3650189-3650208 | None:intergenic | 55.0% | |
| AGGCACATCTGAGGGCTATG+GGG | + | chr8.4:3650008-3650027 | MS.gene012540:CDS | 55.0% | |
| AGGCTGCTCTTGTTGCAAGC+AGG | + | chr8.4:3649924-3649943 | MS.gene012540:intron | 55.0% | |
| AGTCATGCTTGCCATCGCCA+AGG | - | chr8.4:3650706-3650725 | None:intergenic | 55.0% | |
| CCATCGCGCTTGCAGAAAAC+AGG | - | chr8.4:3650409-3650428 | None:intergenic | 55.0% | |
| CTGAGCCAACCATCGTTAGC+TGG | + | chr8.4:3650177-3650196 | MS.gene012540:CDS | 55.0% | |
| GAAAGGAGCTGACGCCATCT+AGG | - | chr8.4:3651005-3651024 | None:intergenic | 55.0% | |
| GAATGCCGACCCCACTTAGT+GGG | - | chr8.4:3650810-3650829 | None:intergenic | 55.0% | |
| GAGGCACATCTGAGGGCTAT+GGG | + | chr8.4:3650007-3650026 | MS.gene012540:CDS | 55.0% | |
| GAGGCGTAGCAGCAATAGAG+AGG | - | chr8.4:3646266-3646285 | None:intergenic | 55.0% | |
| GCAACCCAGCTAACGATGGT+TGG | - | chr8.4:3650185-3650204 | None:intergenic | 55.0% | |
| GCAAGTAGAACCGCCGATCA+GGG | - | chr8.4:3647954-3647973 | None:intergenic | 55.0% | |
| GCTGGGTTGCAGGTGTGATA+TGG | + | chr8.4:3650195-3650214 | MS.gene012540:intron | 55.0% | |
| GTCATGCTTGCCATCGCCAA+GGG | - | chr8.4:3650705-3650724 | None:intergenic | 55.0% | |
| GTGATGCAGATTGGAGGCAG+CGG | + | chr8.4:3650936-3650955 | MS.gene012540:intron | 55.0% | |
| TGAATGCCGACCCCACTTAG+TGG | - | chr8.4:3650811-3650830 | None:intergenic | 55.0% | |
| TGTGCTTTAGCCCTGATCGG+CGG | + | chr8.4:3647941-3647960 | MS.gene012540:intron | 55.0% | |
| ! | AGAGGCACATCTGAGGGCTA+TGG | + | chr8.4:3650006-3650025 | MS.gene012540:CDS | 55.0% |
| ! | CCTGTTTTCTGCAAGCGCGA+TGG | + | chr8.4:3650406-3650425 | MS.gene012540:CDS | 55.0% |
| ! | TGTATGGGCTAAGGGGAAGG+AGG | + | chr8.4:3646745-3646764 | MS.gene012540:intron | 55.0% |
| !! | GTCCACGAGGCTTTGGAGTA+CGG | + | chr8.4:3648163-3648182 | MS.gene012540:CDS | 55.0% |
| ACTCCCTGACCTGTTGCCCT+TGG | + | chr8.4:3650686-3650705 | MS.gene012540:intron | 60.0% | |
| ATCGCCAAGGGCAACAGGTC+AGG | - | chr8.4:3650693-3650712 | None:intergenic | 60.0% | |
| CACCGTACTCCAAAGCCTCG+TGG | - | chr8.4:3648168-3648187 | None:intergenic | 60.0% | |
| CGCAAGTAGAACCGCCGATC+AGG | - | chr8.4:3647955-3647974 | None:intergenic | 60.0% | |
| CTCTTGTCTTCTGCTGCCGG+AGG | - | chr8.4:3646336-3646355 | None:intergenic | 60.0% | |
| GAGGGCTATGGGGCAGTTCA+CGG | + | chr8.4:3650018-3650037 | MS.gene012540:CDS | 60.0% | |
| TCGCCAAGGGCAACAGGTCA+GGG | - | chr8.4:3650692-3650711 | None:intergenic | 60.0% | |
| TGACCTGTTGCCCTTGGCGA+TGG | + | chr8.4:3650692-3650711 | MS.gene012540:intron | 60.0% | |
| TTCGACTGCTGACGGAGCAC+TGG | + | chr8.4:3648573-3648592 | MS.gene012540:CDS | 60.0% | |
| TTGCCATCGCCAAGGGCAAC+AGG | - | chr8.4:3650698-3650717 | None:intergenic | 60.0% | |
| ! | AGCACTGGAGGCAGCTCCTG+CGG | + | chr8.4:3648588-3648607 | MS.gene012540:CDS | 65.0% |
| !! | GACTGCTGACGGAGCACTGG+AGG | + | chr8.4:3648576-3648595 | MS.gene012540:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 3646233 | 3651040 | 3646233 | ID=MS.gene012540 |
| chr8.4 | mRNA | 3646233 | 3651040 | 3646233 | ID=MS.gene012540.t1;Parent=MS.gene012540 |
| chr8.4 | exon | 3646233 | 3646475 | 3646233 | ID=MS.gene012540.t1.exon1;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3646233 | 3646475 | 3646233 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3646567 | 3646680 | 3646567 | ID=MS.gene012540.t1.exon2;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3646567 | 3646680 | 3646567 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3648142 | 3648207 | 3648142 | ID=MS.gene012540.t1.exon3;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3648142 | 3648207 | 3648142 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3648308 | 3648415 | 3648308 | ID=MS.gene012540.t1.exon4;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3648308 | 3648415 | 3648308 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3648526 | 3648609 | 3648526 | ID=MS.gene012540.t1.exon5;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3648526 | 3648609 | 3648526 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3649668 | 3649769 | 3649668 | ID=MS.gene012540.t1.exon6;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3649668 | 3649769 | 3649668 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3649926 | 3650039 | 3649926 | ID=MS.gene012540.t1.exon7;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3649926 | 3650039 | 3649926 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3650126 | 3650206 | 3650126 | ID=MS.gene012540.t1.exon8;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3650126 | 3650206 | 3650126 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3650391 | 3650510 | 3650391 | ID=MS.gene012540.t1.exon9;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3650391 | 3650510 | 3650391 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| chr8.4 | exon | 3650945 | 3651040 | 3650945 | ID=MS.gene012540.t1.exon10;Parent=MS.gene012540.t1 |
| chr8.4 | CDS | 3650945 | 3651040 | 3650945 | ID=cds.MS.gene012540.t1;Parent=MS.gene012540.t1 |
| Gene Sequence |
| Protein sequence |
