AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27039

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27039.t1 MTR_1g023760 96.401 778 28 0 1 778 1 778 0.0 1529
MS.gene27039.t1 MTR_8g466020 73.485 132 25 1 48 179 19 140 1.59e-53 187
MS.gene27039.t1 MTR_7g007170 79.592 98 20 0 84 181 11 108 4.36e-46 164
MS.gene27039.t1 MTR_1g023925 44.706 170 20 3 557 724 1 98 7.93e-28 108
MS.gene27039.t1 MTR_5g038620 37.313 134 83 1 126 259 121 253 8.40e-17 85.5
MS.gene27039.t1 MTR_4g108140 35.714 140 84 2 124 259 99 236 4.51e-16 82.8
MS.gene27039.t1 MTR_4g108140 35.714 140 84 2 124 259 100 237 4.85e-16 82.8
MS.gene27039.t1 MTR_3g091560 36.047 172 66 6 124 261 112 273 5.66e-15 78.6
MS.gene27039.t1 MTR_4g050480 32.121 165 82 4 124 262 96 256 5.33e-14 75.5
MS.gene27039.t1 MTR_4g050480 32.121 165 82 4 124 262 97 257 5.60e-14 75.5
MS.gene27039.t1 MTR_8g024540 59.649 57 23 0 126 182 129 185 6.29e-14 75.9
MS.gene27039.t1 MTR_0019s0070 33.333 156 88 7 107 260 106 247 1.58e-12 70.9
MS.gene27039.t1 MTR_1g101330 28.631 241 143 8 30 260 25 246 2.32e-12 70.5
MS.gene27039.t1 MTR_8g014580 49.254 67 34 0 126 192 128 194 2.69e-12 70.1
MS.gene27039.t1 MTR_1g041430 56.604 53 23 0 124 176 111 163 5.13e-12 69.3
MS.gene27039.t1 MTR_7g114700 50.769 65 32 0 124 188 135 199 6.99e-12 68.9
MS.gene27039.t1 MTR_1g095740 28.834 163 90 3 124 260 141 303 1.34e-11 68.2
MS.gene27039.t1 MTR_1g007920 56.364 55 24 0 121 175 94 148 2.47e-11 67.0
MS.gene27039.t1 MTR_0047s0040 43.210 81 44 1 117 197 94 172 2.79e-11 67.0
MS.gene27039.t1 MTR_1g007920 56.364 55 24 0 121 175 119 173 3.29e-11 67.0
MS.gene27039.t1 MTR_1g066800 28.302 159 92 2 124 260 116 274 5.53e-11 66.2
MS.gene27039.t1 MTR_1g066800 28.302 159 92 2 124 260 121 279 5.70e-11 66.2
MS.gene27039.t1 MTR_1g103070 44.444 72 39 1 124 195 136 206 6.78e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27039.t1 AT1G19870 36.827 706 286 29 110 773 18 605 9.13e-95 308
MS.gene27039.t1 AT1G19870 36.984 703 283 29 113 773 204 788 8.50e-93 308
MS.gene27039.t1 AT1G18840 36.364 176 94 6 91 259 81 245 8.43e-22 100
MS.gene27039.t1 AT1G18840 36.364 176 94 6 91 259 81 245 8.43e-22 100
MS.gene27039.t1 AT1G18840 36.364 176 94 6 91 259 81 245 8.43e-22 100
MS.gene27039.t1 AT1G74690 37.838 148 69 3 124 259 113 249 1.08e-20 97.4
MS.gene27039.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.34e-20 97.4
MS.gene27039.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.34e-20 97.4
MS.gene27039.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.34e-20 97.4
MS.gene27039.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.69e-20 97.1
MS.gene27039.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.69e-20 97.1
MS.gene27039.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.69e-20 97.1
MS.gene27039.t1 AT1G14380 37.589 141 77 3 124 259 94 228 1.84e-20 96.7
MS.gene27039.t1 AT5G03040 29.630 162 87 4 124 260 115 274 5.61e-15 78.6
MS.gene27039.t1 AT5G03040 29.630 162 87 4 124 260 115 274 5.61e-15 78.6
MS.gene27039.t1 AT5G03040 29.630 162 87 4 124 260 115 274 5.61e-15 78.6
MS.gene27039.t1 AT3G49260 51.471 68 33 0 124 191 120 187 7.85e-15 78.2
MS.gene27039.t1 AT3G49260 51.471 68 33 0 124 191 120 187 7.85e-15 78.2
MS.gene27039.t1 AT3G49260 51.471 68 33 0 124 191 120 187 7.85e-15 78.2
MS.gene27039.t1 AT3G49260 51.471 68 33 0 124 191 120 187 8.24e-15 78.2
MS.gene27039.t1 AT4G14750 31.111 225 118 6 1 214 1 199 1.31e-14 77.0
MS.gene27039.t1 AT3G52290 31.875 160 84 4 124 260 108 265 1.75e-14 77.0
MS.gene27039.t1 AT2G02790 28.497 193 134 2 67 259 53 241 1.96e-14 77.8
MS.gene27039.t1 AT2G02790 28.497 193 134 2 67 259 53 241 2.15e-14 77.4
MS.gene27039.t1 AT2G02790 28.497 193 134 2 67 259 53 241 2.15e-14 77.4
MS.gene27039.t1 AT1G01110 55.072 69 30 1 126 194 123 190 2.93e-14 76.6
MS.gene27039.t1 AT4G14750 31.111 225 118 6 1 214 60 258 4.04e-14 75.9
MS.gene27039.t1 AT4G14750 31.111 225 118 6 1 214 60 258 4.53e-14 75.9
MS.gene27039.t1 AT4G00820 53.623 69 31 1 126 194 134 201 1.13e-13 75.1
MS.gene27039.t1 AT3G51380 53.968 63 29 0 124 186 37 99 4.28e-13 66.6
MS.gene27039.t1 AT4G10640 35.260 173 76 6 19 189 27 165 4.63e-13 72.4
MS.gene27039.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.09e-12 71.2
MS.gene27039.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.09e-12 71.2
MS.gene27039.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.09e-12 71.2
MS.gene27039.t1 AT3G22190 30.435 161 88 3 126 262 90 250 1.09e-12 71.2
MS.gene27039.t1 AT1G72670 30.097 206 96 7 96 260 57 255 1.60e-12 70.9
MS.gene27039.t1 AT2G26180 57.692 52 22 0 124 175 84 135 3.35e-11 66.6
MS.gene27039.t1 AT5G13460 32.164 171 99 6 107 260 92 262 5.35e-11 66.2
MS.gene27039.t1 AT3G09710 30.409 171 92 7 124 269 108 276 5.59e-11 66.2

Find 166 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTACTTCTTGTTTA+AGG 0.127404 1.1:+1120780 MS.gene27039:CDS
TTGATTCCATTATTTCATTT+TGG 0.176997 1.1:-1123067 None:intergenic
GGCTTCAATTAGAGGATATT+TGG 0.187454 1.1:+1122009 MS.gene27039:CDS
GAAGGTGTTCCTTGAGATTC+AGG 0.211542 1.1:-1123779 None:intergenic
TCTTGATTCTGAGGAGAATT+AGG 0.232958 1.1:-1123110 None:intergenic
GTTTCGGTGACAATTGTTTC+TGG 0.235103 1.1:-1121935 None:intergenic
GATAGTACGGTACCACTTTC+AGG 0.245019 1.1:-1123413 None:intergenic
ACTTTCAGGATCAGCATTTC+TGG 0.256182 1.1:-1123399 None:intergenic
ATGGTTAGGCGTGTGTCGTC+TGG 0.263157 1.1:+1124824 MS.gene27039:intron
TATCCCTTCTACTAAATCTT+TGG 0.290554 1.1:-1123495 None:intergenic
TTCTTTCCAAAATGAAATAA+TGG 0.290941 1.1:+1123061 MS.gene27039:CDS
CCCTTTGTGCCCTGCAGAGC+TGG 0.292599 1.1:-1124274 None:intergenic
GACCACATCTTCAGCAAATA+AGG 0.295588 1.1:+1121787 MS.gene27039:CDS
GATCAATTAGAAACTGTTAA+TGG 0.296217 1.1:+1123593 MS.gene27039:CDS
CAGCAATAAGTTTGCTTCTC+AGG 0.298464 1.1:+1122552 MS.gene27039:CDS
GCTGAGTTCAAATTCAAATT+CGG 0.303504 1.1:+1123268 MS.gene27039:CDS
GGCGTGTGTCGTCTGGGGTT+GGG 0.303623 1.1:+1124831 MS.gene27039:intron
ATTGCTACTACTATTATCTT+TGG 0.306041 1.1:-1124074 None:intergenic
GACTGTTCGGTCGTACAAAT+TGG 0.313335 1.1:-1122792 None:intergenic
GCTAATTCAAATCAAGATTC+AGG 0.330999 1.1:+1123896 MS.gene27039:CDS
GGTTCTTGATCAGTGGGTTC+AGG 0.340125 1.1:-1124049 None:intergenic
GCGAATGCAAATCATGATTC+AGG 0.353964 1.1:+1123950 MS.gene27039:CDS
CAAGCAGAATCACCTTTAGA+AGG 0.355744 1.1:-1122711 None:intergenic
AGGCTCAACAGCATGCTCTT+TGG 0.355751 1.1:-1123657 None:intergenic
GCGTGTGTCGTCTGGGGTTG+GGG 0.358208 1.1:+1124832 MS.gene27039:CDS
ATCATCCAGGCTTCAATTAG+AGG 0.366920 1.1:+1122001 MS.gene27039:CDS
AGGCGTGTGTCGTCTGGGGT+TGG 0.367187 1.1:+1124830 MS.gene27039:intron
ATGATTATCACAGCAGATTC+TGG 0.367431 1.1:-1121983 None:intergenic
GTCATTATCTCCAGCTCTGC+AGG 0.369580 1.1:+1124264 MS.gene27039:CDS
CTGAGTTCAAATTCAAATTC+GGG 0.375719 1.1:+1123269 MS.gene27039:CDS
TAATTTACCTATCTCTGATT+CGG 0.378191 1.1:+1123571 MS.gene27039:CDS
CAAATCTTCTCAACAACATT+AGG 0.378376 1.1:-1121854 None:intergenic
TTGTGTAGCTTGCATGAAAC+GGG 0.383519 1.1:-1124107 None:intergenic
TGCACATCTGGACTTGATCT+TGG 0.387615 1.1:-1124163 None:intergenic
GGAAAGAGACGCAATTCATT+TGG 0.388346 1.1:+1124016 MS.gene27039:CDS
GATGCCAAAGATTTAGTAGA+AGG 0.388914 1.1:+1123491 MS.gene27039:CDS
GGAGAGATGGATGTTTGTTT+CGG 0.389207 1.1:+1122743 MS.gene27039:CDS
AACACCTTCAAGTCAGGTTT+CGG 0.391099 1.1:+1123793 MS.gene27039:CDS
TCGTACAAGGAGCTGCATTT+TGG 0.392183 1.1:-1122238 None:intergenic
AGAGGAATTTGCATTTATCT+TGG 0.400449 1.1:-1124140 None:intergenic
ATGTCAGTGTCATGCACATC+TGG 0.402507 1.1:-1124175 None:intergenic
GAGGGAAAGAAAATTACATT+TGG 0.405918 1.1:+1123191 MS.gene27039:CDS
ACCTGGTGCAACTGGTAAGC+AGG 0.406901 1.1:+1124222 MS.gene27039:CDS
TTGGTAGGTTCTTGATCAGT+GGG 0.414639 1.1:-1124055 None:intergenic
TTTCCATTCAGCTGATCCTT+AGG 0.417372 1.1:-1123998 None:intergenic
TTCTCTAATAAATGATAACT+TGG 0.417692 1.1:+1122977 MS.gene27039:CDS
AGATGCATGAGTGCTATCTT+TGG 0.419431 1.1:-1122823 None:intergenic
TTCGTGGGCACTTGGTTAGA+AGG 0.422143 1.1:+1122178 MS.gene27039:CDS
TTTGGTTTCGTCCGACTGTT+CGG 0.423888 1.1:-1122805 None:intergenic
CATTCCTTACCTGGTGCAAC+TGG 0.427428 1.1:+1124214 MS.gene27039:CDS
TTCACCGAAACCTGACTTGA+AGG 0.429554 1.1:-1123797 None:intergenic
TCAAGGAACACCTTCAAGTC+AGG 0.430241 1.1:+1123787 MS.gene27039:CDS
GGAATTGTCATATAGCTTCC+CGG 0.435431 1.1:-1123758 None:intergenic
GCATGCTCTTTGGAGTTCTC+AGG 0.444509 1.1:-1123647 None:intergenic
TGGTTAGGCGTGTGTCGTCT+GGG 0.444597 1.1:+1124825 MS.gene27039:intron
TCTTTCCCTCGGTCTCTAGT+TGG 0.446588 1.1:-1123178 None:intergenic
ACCTGACAGATCAGAGACTT+TGG 0.446642 1.1:+1123457 MS.gene27039:CDS
ATCCACCTTACTCTCAGTTT+CGG 0.446953 1.1:-1121951 None:intergenic
ACAAAGGGCAATGGTTCATC+TGG 0.448716 1.1:+1124289 MS.gene27039:CDS
ATTTGCATTTATCTTGGCCT+TGG 0.451725 1.1:-1124134 None:intergenic
AGAAAATTACATTTGGATCA+AGG 0.453684 1.1:+1123198 MS.gene27039:CDS
CTTCTAAAGGTGATTCTGCT+TGG 0.454777 1.1:+1122712 MS.gene27039:CDS
CCAGCTCTGCAGGGCACAAA+GGG 0.458401 1.1:+1124274 MS.gene27039:CDS
AAGGTGATTCTGCTTGGAAA+TGG 0.460534 1.1:+1122718 MS.gene27039:CDS
GAGAATAAAATCAACAAGAC+TGG 0.464101 1.1:+1123827 MS.gene27039:CDS
CTCGGATGGTAGAGGTGAAT+CGG 0.465697 1.1:-1122889 None:intergenic
GAATCTTGATTTGAATTAGC+AGG 0.467650 1.1:-1123893 None:intergenic
AATTGATCCGAATCAGAGAT+AGG 0.472689 1.1:-1123578 None:intergenic
AGCTGCTGTTCGTGGGCACT+TGG 0.480789 1.1:+1122170 MS.gene27039:CDS
GTATTCTCAACAAGCTTCAC+CGG 0.482731 1.1:+1123739 MS.gene27039:CDS
TCCAAAGTCTCTGATCTGTC+AGG 0.487160 1.1:-1123458 None:intergenic
CCTGAAAACAAGATTGATCA+TGG 0.488495 1.1:+1123524 MS.gene27039:CDS
ATTTGCATTCGCAGGAGACT+TGG 0.490435 1.1:-1123939 None:intergenic
GTCAAATGTGATCCTTCTAA+AGG 0.490498 1.1:+1122699 MS.gene27039:CDS
ATCTGCTGTGATAATCATCC+AGG 0.492717 1.1:+1121988 MS.gene27039:CDS
ATTGTGTAGCTTGCATGAAA+CGG 0.493254 1.1:-1124108 None:intergenic
AGGTTAATCACATGCGGTGG+TGG 0.495955 1.1:+1120800 MS.gene27039:CDS
CTTACCAGTTGCACCAGGTA+AGG 0.496866 1.1:-1124218 None:intergenic
TTTGGTAGGTTCTTGATCAG+TGG 0.497450 1.1:-1124056 None:intergenic
TTGCCTAAGGATCAGCTGAA+TGG 0.499267 1.1:+1123995 MS.gene27039:CDS
CTTGGAAATGGTTGGAGAGA+TGG 0.499335 1.1:+1122730 MS.gene27039:CDS
CTACTACTATTATCTTTGGT+AGG 0.501445 1.1:-1124070 None:intergenic
GAGCATGTCGTGCTCGTACA+AGG 0.502104 1.1:-1122251 None:intergenic
GGCAGTCTTCTCTTCATCCT+CGG 0.508919 1.1:-1122907 None:intergenic
AACTGAAGAATAACTTGAGA+TGG 0.509161 1.1:-1122864 None:intergenic
TGTCACCGAAACTGAGAGTA+AGG 0.509505 1.1:+1121946 MS.gene27039:CDS
GAGGATTGAAAACTAATACT+TGG 0.509672 1.1:-1121824 None:intergenic
TCATCACTTTCTTGATTCTG+AGG 0.511188 1.1:-1123119 None:intergenic
TAGCACTCATGCATCTCAAT+CGG 0.515881 1.1:+1122830 MS.gene27039:CDS
GCCGAGTGGTTTGCTCGACC+AGG 0.516424 1.1:+1123295 MS.gene27039:CDS
ATCAGCATTTCTGGAAGGAT+AGG 0.517006 1.1:-1123390 None:intergenic
AATATCCTCTAATTGAAGCC+TGG 0.517071 1.1:-1122006 None:intergenic
TCTTCATCCTCGGATGGTAG+AGG 0.519415 1.1:-1122897 None:intergenic
GAATCATGATTTGCATTCGC+AGG 0.523017 1.1:-1123947 None:intergenic
ACAAACTGAGACTGTTCTGC+AGG 0.526275 1.1:+1123709 MS.gene27039:CDS
AATAAATGATAACTTGGAAG+AGG 0.528936 1.1:+1122983 MS.gene27039:CDS
ATTCTAATGATAAACGCGGT+TGG 0.530998 1.1:+1121705 MS.gene27039:CDS
GGATCACATTTGACATGGAT+AGG 0.532828 1.1:-1122690 None:intergenic
AGAAATGCTGATCCTGAAAG+TGG 0.536855 1.1:+1123401 MS.gene27039:CDS
GAGATAGGTAAATTAGAAGT+CGG 0.539880 1.1:-1123563 None:intergenic
TTGGTTAGAAGGCATGCTGT+TGG 0.542923 1.1:+1122189 MS.gene27039:CDS
AGACGCAGGGTACTGTCTGC+TGG 0.543441 1.1:+1123860 MS.gene27039:CDS
TGATTGAGCAGCAATAAATG+AGG 0.543692 1.1:-1123234 None:intergenic
CTCCTTATTTGCTGAAGATG+TGG 0.543734 1.1:-1121789 None:intergenic
TGATTCTGCTTGGAAATGGT+TGG 0.544910 1.1:+1122722 MS.gene27039:CDS
TTGGAAAGAATCAATTTCAG+TGG 0.550366 1.1:-1123048 None:intergenic
GTGACTCAACCGATACATCC+TGG 0.551810 1.1:-1123313 None:intergenic
GAAAGAATCAATTTCAGTGG+AGG 0.553284 1.1:-1123045 None:intergenic
AGTTGAAGAAATAGATAGTA+CGG 0.556045 1.1:-1123426 None:intergenic
ATGACAATTCCTGAATCTCA+AGG 0.562140 1.1:+1123770 MS.gene27039:CDS
TGAGTTGGTATCATAGTAAG+TGG 0.562597 1.1:-1122928 None:intergenic
GTCTTCTCTTCATCCTCGGA+TGG 0.563357 1.1:-1122903 None:intergenic
TTTGCTCGACCAGGATGTAT+CGG 0.563779 1.1:+1123304 MS.gene27039:CDS
AGATCACCATGTTGTTTCTG+AGG 0.564237 1.1:+1120835 MS.gene27039:CDS
AAGTTGCAAGCTGCTGTTCG+TGG 0.564977 1.1:+1122162 MS.gene27039:CDS
TCAGCATTTCTGGAAGGATA+GGG 0.569303 1.1:-1123389 None:intergenic
CCCTGCTTACCAGTTGCACC+AGG 0.570056 1.1:-1124223 None:intergenic
CTGCAGGGCACAAAGGGCAA+TGG 0.570514 1.1:+1124280 MS.gene27039:CDS
GATTGAGCAGCAATAAATGA+GGG 0.573179 1.1:-1123233 None:intergenic
TCCAGCTCTGCAGGGCACAA+AGG 0.574271 1.1:+1124273 MS.gene27039:CDS
ATGGAATCAAATGCAAGTGT+CGG 0.577817 1.1:+1123080 MS.gene27039:CDS
TTAATCACATGCGGTGGTGG+TGG 0.579067 1.1:+1120803 MS.gene27039:CDS
AAGAAGAGACATTCCTTACC+TGG 0.579855 1.1:+1124205 MS.gene27039:CDS
TAGTAGAGAACAATTGCCTA+AGG 0.581315 1.1:+1123982 MS.gene27039:CDS
AAATGTGAAGCACACTTCTG+TGG 0.582438 1.1:+1122519 MS.gene27039:CDS
TCAGGATCAGCATTTCTGGA+AGG 0.588211 1.1:-1123395 None:intergenic
CCTGGTGCAACTGGTAAGCA+GGG 0.589383 1.1:+1124223 MS.gene27039:CDS
CTCGGTCTCTAGTTGGTCTG+AGG 0.591676 1.1:-1123171 None:intergenic
TAGAAGGATCACATTTGACA+TGG 0.592428 1.1:-1122695 None:intergenic
GCTCAGAAGTCACATTCAGA+TGG 0.597896 1.1:+1122270 MS.gene27039:CDS
AATCATGATTCAGGCTCAAG+AGG 0.598045 1.1:+1123959 MS.gene27039:CDS
AGAGGCTCCTCCCGAAAAGA+CGG 0.601939 1.1:+1123001 MS.gene27039:CDS
GATAATGACTGTTCGACACG+CGG 0.605175 1.1:-1124250 None:intergenic
CTGGATCAAGCAGTAGACGC+AGG 0.606218 1.1:+1123846 MS.gene27039:CDS
TGTTTAAGGTTAATCACATG+CGG 0.607247 1.1:+1120794 MS.gene27039:CDS
ATTATCACAGCAGATTCTGG+TGG 0.607983 1.1:-1121980 None:intergenic
ATGCCAAAGATTTAGTAGAA+GGG 0.611090 1.1:+1123492 MS.gene27039:CDS
AGTTGCAAGCTGCTGTTCGT+GGG 0.611911 1.1:+1122163 MS.gene27039:CDS
CTGAATCAACAACATTGCCA+CGG 0.613933 1.1:-1123619 None:intergenic
TGAATCAACAACATTGCCAC+GGG 0.613962 1.1:-1123618 None:intergenic
ATCTGGACTTGATCTTGGAG+AGG 0.618466 1.1:-1124158 None:intergenic
TTATTAGAGAAGATGAAGAG+AGG 0.625076 1.1:-1122965 None:intergenic
TGGTATCTCTGAGCAAACAT+CGG 0.629581 1.1:-1121915 None:intergenic
TCATTATCTCCAGCTCTGCA+GGG 0.630457 1.1:+1124265 MS.gene27039:CDS
GAAACTGTTAATGGCTCCCG+TGG 0.632617 1.1:+1123602 MS.gene27039:CDS
TATTCTCAACAAGCTTCACC+GGG 0.635415 1.1:+1123740 MS.gene27039:CDS
GTTCAAATTCAAATTCGGGT+AGG 0.637397 1.1:+1123273 MS.gene27039:CDS
GCAAGCTACACAATCTGCCA+AGG 0.638530 1.1:+1124117 MS.gene27039:CDS
AATTTGTACGACCGAACAGT+CGG 0.638857 1.1:+1122794 MS.gene27039:CDS
CGATTCACCTCTACCATCCG+AGG 0.641344 1.1:+1122890 MS.gene27039:CDS
CTCAGACCAACTAGAGACCG+AGG 0.645334 1.1:+1123172 MS.gene27039:CDS
GCTTGCTTGAAAGTGTGAGT+TGG 0.649171 1.1:-1122943 None:intergenic
TGGATCAAGCAGTAGACGCA+GGG 0.654626 1.1:+1123847 MS.gene27039:CDS
TCAAATTCGGGTAGGCCGAG+TGG 0.655550 1.1:+1123281 MS.gene27039:CDS
TCCTGGTCGAGCAAACCACT+CGG 0.660396 1.1:-1123296 None:intergenic
CACCGAAACTGAGAGTAAGG+TGG 0.667231 1.1:+1121949 MS.gene27039:CDS
TTAAGGTTAATCACATGCGG+TGG 0.672478 1.1:+1120797 MS.gene27039:CDS
TATCTCTGAGCAAACATCGG+AGG 0.674060 1.1:-1121912 None:intergenic
TCAGGCTCAAGAGTGTCTGT+CGG 0.675797 1.1:+1123914 MS.gene27039:CDS
AACAACATTAGGCTCAGCTG+AGG 0.679085 1.1:-1121843 None:intergenic
GGTTAGGCGTGTGTCGTCTG+GGG 0.683717 1.1:+1124826 MS.gene27039:intron
TCAGACCAACTAGAGACCGA+GGG 0.692845 1.1:+1123173 MS.gene27039:CDS
GATTCACCTCAGAAACAACA+TGG 0.720891 1.1:-1120841 None:intergenic
TGTGTAGCTTGCATGAAACG+GGG 0.721075 1.1:-1124106 None:intergenic
CAAACATCGGAGGATAACTG+TGG 0.737595 1.1:-1121902 None:intergenic
AAGGATTCTAATGATAAACG+CGG 0.747406 1.1:+1121701 MS.gene27039:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCACAAAAAAAAAAAAAAAA+AGG - chr1.1:1121150-1121169 None:intergenic 10.0%
!!! TTTTATTTTCTTTCTATTTT+TGG + chr1.1:1121027-1121046 MS.gene27039:intron 10.0%
!! ATATTCTTTGGTTATAAATA+AGG - chr1.1:1124620-1124639 None:intergenic 15.0%
!!! CTATTAAACGAATAAAATTT+TGG - chr1.1:1122365-1122384 None:intergenic 15.0%
!!! TCAATTTTTTGGTATATAAT+CGG - chr1.1:1124436-1124455 None:intergenic 15.0%
!!! TTATATAAGGATCAATTTTT+TGG - chr1.1:1124447-1124466 None:intergenic 15.0%
!!! TTCATAATTGAATAGTTTTA+AGG + chr1.1:1121069-1121088 MS.gene27039:intron 15.0%
!! AAATGTTGGAATTGTTAATA+TGG + chr1.1:1124805-1124824 MS.gene27039:intron 20.0%
!! AAGTATGTCATTATATTCTT+TGG - chr1.1:1124632-1124651 None:intergenic 20.0%
!! ACGAACAAAAGATTTATAAA+AGG - chr1.1:1122094-1122113 None:intergenic 20.0%
!! ATTTAGTATGAATGAACAAA+CGG - chr1.1:1122618-1122637 None:intergenic 20.0%
!! TTATGAATCAAAATCTTGTA+AGG + chr1.1:1122052-1122071 MS.gene27039:intron 20.0%
!! TTCTCTAATAAATGATAACT+TGG + chr1.1:1122977-1122996 MS.gene27039:CDS 20.0%
!! TTCTTTCCAAAATGAAATAA+TGG + chr1.1:1123061-1123080 MS.gene27039:CDS 20.0%
!!! AATTTTTTGGTATATAATCG+GGG - chr1.1:1124434-1124453 None:intergenic 20.0%
!!! CAATTTTTTGGTATATAATC+GGG - chr1.1:1124435-1124454 None:intergenic 20.0%
!!! CATTATATAGACAGATTTTA+TGG + chr1.1:1124508-1124527 MS.gene27039:intron 20.0%
!!! TCTAAAACTAAGAAAATGTT+AGG - chr1.1:1124379-1124398 None:intergenic 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG + chr1.1:1122471-1122490 MS.gene27039:intron 20.0%
!!! TTGATTCCATTATTTCATTT+TGG - chr1.1:1123070-1123089 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG + chr1.1:1122368-1122387 MS.gene27039:intron 20.0%
! AAATGATGACTCAAAAACTA+CGG + chr1.1:1122296-1122315 MS.gene27039:CDS 25.0%
! AACTAAGAAAATGTTAGGTA+TGG - chr1.1:1124374-1124393 None:intergenic 25.0%
! AATAAATGATAACTTGGAAG+AGG + chr1.1:1122983-1123002 MS.gene27039:CDS 25.0%
! AATAAGAAAAGAAACGAAGT+TGG - chr1.1:1120958-1120977 None:intergenic 25.0%
! AGAAAATTACATTTGGATCA+AGG + chr1.1:1123198-1123217 MS.gene27039:CDS 25.0%
! AGTTGAAGAAATAGATAGTA+CGG - chr1.1:1123429-1123448 None:intergenic 25.0%
! ATATACATCTTTATGCCAAT+GGG + chr1.1:1121380-1121399 MS.gene27039:intron 25.0%
! ATTGCTACTACTATTATCTT+TGG - chr1.1:1124077-1124096 None:intergenic 25.0%
! GATCAATTAGAAACTGTTAA+TGG + chr1.1:1123593-1123612 MS.gene27039:CDS 25.0%
! GATGTAAGTTGTACAATTTA+CGG + chr1.1:1121414-1121433 MS.gene27039:intron 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG - chr1.1:1121236-1121255 None:intergenic 25.0%
! TAATTTACCTATCTCTGATT+CGG + chr1.1:1123571-1123590 MS.gene27039:CDS 25.0%
! TATATACATCTTTATGCCAA+TGG + chr1.1:1121379-1121398 MS.gene27039:intron 25.0%
! TATCAACTAAGCACAAAAAA+CGG - chr1.1:1121440-1121459 None:intergenic 25.0%
! TTGGAATTGTTAATATGGTT+AGG + chr1.1:1124810-1124829 MS.gene27039:intron 25.0%
!! AAATGTAATTTTCTTTCCCT+CGG - chr1.1:1123192-1123211 None:intergenic 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG + chr1.1:1120780-1120799 MS.gene27039:CDS 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG + chr1.1:1122104-1122123 MS.gene27039:intron 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG + chr1.1:1121676-1121695 MS.gene27039:intron 25.0%
!!! AATGGCATTGCTTTTATATA+AGG - chr1.1:1124460-1124479 None:intergenic 25.0%
!!! ATTTTTTGGTATATAATCGG+GGG - chr1.1:1124433-1124452 None:intergenic 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG + chr1.1:1122465-1122484 MS.gene27039:intron 25.0%
AACTGAAGAATAACTTGAGA+TGG - chr1.1:1122867-1122886 None:intergenic 30.0%
AAGGATTCTAATGATAAACG+CGG + chr1.1:1121701-1121720 MS.gene27039:CDS 30.0%
AGAGGAATTTGCATTTATCT+TGG - chr1.1:1124143-1124162 None:intergenic 30.0%
ATGCCAAAGATTTAGTAGAA+GGG + chr1.1:1123492-1123511 MS.gene27039:CDS 30.0%
CAAATCTTCTCAACAACATT+AGG - chr1.1:1121857-1121876 None:intergenic 30.0%
CATGGTAAGAAAAGAAATGT+TGG + chr1.1:1124791-1124810 MS.gene27039:intron 30.0%
CTACTACTATTATCTTTGGT+AGG - chr1.1:1124073-1124092 None:intergenic 30.0%
CTGAGTTCAAATTCAAATTC+GGG + chr1.1:1123269-1123288 MS.gene27039:CDS 30.0%
CTGTTTGGATAACATTGAAT+AGG + chr1.1:1121094-1121113 MS.gene27039:intron 30.0%
GAGAATAAAATCAACAAGAC+TGG + chr1.1:1123827-1123846 MS.gene27039:CDS 30.0%
GAGATAGGTAAATTAGAAGT+CGG - chr1.1:1123566-1123585 None:intergenic 30.0%
GAGGATTGAAAACTAATACT+TGG - chr1.1:1121827-1121846 None:intergenic 30.0%
GAGGGAAAGAAAATTACATT+TGG + chr1.1:1123191-1123210 MS.gene27039:CDS 30.0%
GCTAATTCAAATCAAGATTC+AGG + chr1.1:1123896-1123915 MS.gene27039:CDS 30.0%
GCTGAGTTCAAATTCAAATT+CGG + chr1.1:1123268-1123287 MS.gene27039:CDS 30.0%
GTTATGATAAATACCTTTCG+AGG + chr1.1:1124559-1124578 MS.gene27039:intron 30.0%
TATCCCTTCTACTAAATCTT+TGG - chr1.1:1123498-1123517 None:intergenic 30.0%
TATGATATGTGACATCACAT+TGG + chr1.1:1124406-1124425 MS.gene27039:intron 30.0%
TGGCAAAAATGTGACATTTA+AGG + chr1.1:1124528-1124547 MS.gene27039:intron 30.0%
TTATTAGAGAAGATGAAGAG+AGG - chr1.1:1122968-1122987 None:intergenic 30.0%
TTGGAAAGAATCAATTTCAG+TGG - chr1.1:1123051-1123070 None:intergenic 30.0%
TTGTGAAAAACACTAAACCT+CGG - chr1.1:1120883-1120902 None:intergenic 30.0%
! ATATAAAGTTGATCCTCGAA+AGG - chr1.1:1124575-1124594 None:intergenic 30.0%
! ATCATATGTAACCGTCTTTT+CGG - chr1.1:1123015-1123034 None:intergenic 30.0%
! CTAAAGATTACTTGCTACTT+TGG + chr1.1:1124334-1124353 MS.gene27039:intron 30.0%
! GAATCTTGATTTGAATTAGC+AGG - chr1.1:1123896-1123915 None:intergenic 30.0%
! GTAGCAAGTAATCTTTAGAA+AGG - chr1.1:1124332-1124351 None:intergenic 30.0%
! TGTTTAAGGTTAATCACATG+CGG + chr1.1:1120794-1120813 MS.gene27039:CDS 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG + chr1.1:1122027-1122046 MS.gene27039:intron 30.0%
!! GTCATTTTCAGCTTAGTTTA+GGG + chr1.1:1124730-1124749 MS.gene27039:intron 30.0%
!! TGAAATTTTGATCGTGATTC+AGG + chr1.1:1121613-1121632 MS.gene27039:intron 30.0%
!!! AATAGTTTTAAGGTGCTGTT+TGG + chr1.1:1121079-1121098 MS.gene27039:intron 30.0%
!!! ACATGGATAGGTTTGTTTTT+TGG - chr1.1:1122681-1122700 None:intergenic 30.0%
!!! TGTCATTTTCAGCTTAGTTT+AGG + chr1.1:1124729-1124748 MS.gene27039:intron 30.0%
AATATCCTCTAATTGAAGCC+TGG - chr1.1:1122009-1122028 None:intergenic 35.0%
AATTGATCCGAATCAGAGAT+AGG - chr1.1:1123581-1123600 None:intergenic 35.0%
AGTCCTTGACGAAAGAAAAA+TGG - chr1.1:1124478-1124497 None:intergenic 35.0%
ATGACAATTCCTGAATCTCA+AGG + chr1.1:1123770-1123789 MS.gene27039:CDS 35.0%
ATGATTATCACAGCAGATTC+TGG - chr1.1:1121986-1122005 None:intergenic 35.0%
ATGGAATCAAATGCAAGTGT+CGG + chr1.1:1123080-1123099 MS.gene27039:CDS 35.0%
ATTCTAATGATAAACGCGGT+TGG + chr1.1:1121705-1121724 MS.gene27039:CDS 35.0%
ATTTGCATTTATCTTGGCCT+TGG - chr1.1:1124137-1124156 None:intergenic 35.0%
CCTGAAAACAAGATTGATCA+TGG + chr1.1:1123524-1123543 MS.gene27039:CDS 35.0%
GAAAGAATCAATTTCAGTGG+AGG - chr1.1:1123048-1123067 None:intergenic 35.0%
GATGCCAAAGATTTAGTAGA+AGG + chr1.1:1123491-1123510 MS.gene27039:CDS 35.0%
GATTGAGCAGCAATAAATGA+GGG - chr1.1:1123236-1123255 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG + chr1.1:1122009-1122028 MS.gene27039:CDS 35.0%
GTCAAATGTGATCCTTCTAA+AGG + chr1.1:1122699-1122718 MS.gene27039:CDS 35.0%
GTTCAAATTCAAATTCGGGT+AGG + chr1.1:1123273-1123292 MS.gene27039:CDS 35.0%
TAGAAGGATCACATTTGACA+TGG - chr1.1:1122698-1122717 None:intergenic 35.0%
TAGTAGAGAACAATTGCCTA+AGG + chr1.1:1123982-1124001 MS.gene27039:CDS 35.0%
TATCATTAGAATCCTTGACC+TGG - chr1.1:1121697-1121716 None:intergenic 35.0%
TCATCACTTTCTTGATTCTG+AGG - chr1.1:1123122-1123141 None:intergenic 35.0%
TGATTGAGCAGCAATAAATG+AGG - chr1.1:1123237-1123256 None:intergenic 35.0%
TTTAATGATGTTCCAGGTCA+AGG + chr1.1:1121682-1121701 MS.gene27039:intron 35.0%
! AAGTCAGATGCAATTTTCTC+AGG - chr1.1:1123680-1123699 None:intergenic 35.0%
! ATTGTGTAGCTTGCATGAAA+CGG - chr1.1:1124111-1124130 None:intergenic 35.0%
! TCATATGTAACCGTCTTTTC+GGG - chr1.1:1123014-1123033 None:intergenic 35.0%
! TCTTGATTCTGAGGAGAATT+AGG - chr1.1:1123113-1123132 None:intergenic 35.0%
!! TGAGTTGGTATCATAGTAAG+TGG - chr1.1:1122931-1122950 None:intergenic 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG + chr1.1:1122109-1122128 MS.gene27039:intron 35.0%
!!! ATGCCATTTTTCTTTCGTCA+AGG + chr1.1:1124472-1124491 MS.gene27039:intron 35.0%
!!! CCATGATCAATCTTGTTTTC+AGG - chr1.1:1123527-1123546 None:intergenic 35.0%
AAAACGACACACTTAGAGCA+AGG - chr1.1:1122453-1122472 None:intergenic 40.0%
AAACTTGATCTCGTGGATCT+AGG - chr1.1:1121491-1121510 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG + chr1.1:1122519-1122538 MS.gene27039:CDS 40.0%
AACACCTTCAAGTCAGGTTT+CGG + chr1.1:1123793-1123812 MS.gene27039:CDS 40.0%
AAGAAGAGACATTCCTTACC+TGG + chr1.1:1124205-1124224 MS.gene27039:CDS 40.0%
AAGGTGATTCTGCTTGGAAA+TGG + chr1.1:1122718-1122737 MS.gene27039:CDS 40.0%
AATCATGATTCAGGCTCAAG+AGG + chr1.1:1123959-1123978 MS.gene27039:CDS 40.0%
AATTTGTACGACCGAACAGT+CGG + chr1.1:1122794-1122813 MS.gene27039:CDS 40.0%
ACAAACGGATGACGTTAAAC+AGG - chr1.1:1122603-1122622 None:intergenic 40.0%
ACTTTCAGGATCAGCATTTC+TGG - chr1.1:1123402-1123421 None:intergenic 40.0%
AGAAATGCTGATCCTGAAAG+TGG + chr1.1:1123401-1123420 MS.gene27039:CDS 40.0%
AGATGCATGAGTGCTATCTT+TGG - chr1.1:1122826-1122845 None:intergenic 40.0%
ATCATCCAGGCTTCAATTAG+AGG + chr1.1:1122001-1122020 MS.gene27039:CDS 40.0%
ATCCACCTTACTCTCAGTTT+CGG - chr1.1:1121954-1121973 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG + chr1.1:1121988-1122007 MS.gene27039:CDS 40.0%
ATGCACAAAACTTGATCTCG+TGG - chr1.1:1121498-1121517 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG - chr1.1:1121983-1122002 None:intergenic 40.0%
ATTCCAACAGCTTCAATGGA+AGG - chr1.1:1122653-1122672 None:intergenic 40.0%
CAAGCAGAATCACCTTTAGA+AGG - chr1.1:1122714-1122733 None:intergenic 40.0%
CTCTCTCTTAGATAATTCCG+AGG + chr1.1:1120863-1120882 MS.gene27039:intron 40.0%
CTGAATCAACAACATTGCCA+CGG - chr1.1:1123622-1123641 None:intergenic 40.0%
GACCACATCTTCAGCAAATA+AGG + chr1.1:1121787-1121806 MS.gene27039:CDS 40.0%
GATTCACCTCAGAAACAACA+TGG - chr1.1:1120844-1120863 None:intergenic 40.0%
GCGAATGCAAATCATGATTC+AGG + chr1.1:1123950-1123969 MS.gene27039:CDS 40.0%
GGAAAGAGACGCAATTCATT+TGG + chr1.1:1124016-1124035 MS.gene27039:CDS 40.0%
GGAATTGTCATATAGCTTCC+CGG - chr1.1:1123761-1123780 None:intergenic 40.0%
GGAGAGATGGATGTTTGTTT+CGG + chr1.1:1122743-1122762 MS.gene27039:CDS 40.0%
GGATCACATTTGACATGGAT+AGG - chr1.1:1122693-1122712 None:intergenic 40.0%
GTATTCTCAACAAGCTTCAC+CGG + chr1.1:1123739-1123758 MS.gene27039:CDS 40.0%
GTTTCGGTGACAATTGTTTC+TGG - chr1.1:1121938-1121957 None:intergenic 40.0%
TAGCACTCATGCATCTCAAT+CGG + chr1.1:1122830-1122849 MS.gene27039:CDS 40.0%
TATTCTCAACAAGCTTCACC+GGG + chr1.1:1123740-1123759 MS.gene27039:CDS 40.0%
TGAATCAACAACATTGCCAC+GGG - chr1.1:1123621-1123640 None:intergenic 40.0%
TGATTCTGCTTGGAAATGGT+TGG + chr1.1:1122722-1122741 MS.gene27039:CDS 40.0%
TGGTATCTCTGAGCAAACAT+CGG - chr1.1:1121918-1121937 None:intergenic 40.0%
TTAAGGTTAATCACATGCGG+TGG + chr1.1:1120797-1120816 MS.gene27039:CDS 40.0%
TTGGTAGGTTCTTGATCAGT+GGG - chr1.1:1124058-1124077 None:intergenic 40.0%
TTGGTTGCATGAAACATCCT+CGG - chr1.1:1120939-1120958 None:intergenic 40.0%
TTTCCATTCAGCTGATCCTT+AGG - chr1.1:1124001-1124020 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG + chr1.1:1122647-1122666 MS.gene27039:intron 40.0%
TTTGGTAGGTTCTTGATCAG+TGG - chr1.1:1124059-1124078 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG + chr1.1:1121714-1121733 MS.gene27039:CDS 40.0%
! ATCAGCATTTCTGGAAGGAT+AGG - chr1.1:1123393-1123412 None:intergenic 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG + chr1.1:1122552-1122571 MS.gene27039:CDS 40.0%
! CTCCTTATTTGCTGAAGATG+TGG - chr1.1:1121792-1121811 None:intergenic 40.0%
! CTTCTAAAGGTGATTCTGCT+TGG + chr1.1:1122712-1122731 MS.gene27039:CDS 40.0%
! GAATCATGATTTGCATTCGC+AGG - chr1.1:1123950-1123969 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG - chr1.1:1122657-1122676 None:intergenic 40.0%
! TCAGCATTTCTGGAAGGATA+GGG - chr1.1:1123392-1123411 None:intergenic 40.0%
! TTGTGTAGCTTGCATGAAAC+GGG - chr1.1:1124110-1124129 None:intergenic 40.0%
!! AGATCACCATGTTGTTTCTG+AGG + chr1.1:1120835-1120854 MS.gene27039:CDS 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG + chr1.1:1120919-1120938 MS.gene27039:intron 40.0%
AACAACATTAGGCTCAGCTG+AGG - chr1.1:1121846-1121865 None:intergenic 45.0%
ACAAACTGAGACTGTTCTGC+AGG + chr1.1:1123709-1123728 MS.gene27039:CDS 45.0%
ACAAAGGGCAATGGTTCATC+TGG + chr1.1:1124289-1124308 MS.gene27039:CDS 45.0%
ACCTGACAGATCAGAGACTT+TGG + chr1.1:1123457-1123476 MS.gene27039:CDS 45.0%
ATCTGGACTTGATCTTGGAG+AGG - chr1.1:1124161-1124180 None:intergenic 45.0%
ATGTCAGTGTCATGCACATC+TGG - chr1.1:1124178-1124197 None:intergenic 45.0%
ATTTGCATTCGCAGGAGACT+TGG - chr1.1:1123942-1123961 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG - chr1.1:1121905-1121924 None:intergenic 45.0%
CATCAAAAGTCACAGCCCAT+TGG - chr1.1:1121398-1121417 None:intergenic 45.0%
CTTGGAAATGGTTGGAGAGA+TGG + chr1.1:1122730-1122749 MS.gene27039:CDS 45.0%
GACTGTTCGGTCGTACAAAT+TGG - chr1.1:1122795-1122814 None:intergenic 45.0%
GATAATGACTGTTCGACACG+CGG - chr1.1:1124253-1124272 None:intergenic 45.0%
GATAGTACGGTACCACTTTC+AGG - chr1.1:1123416-1123435 None:intergenic 45.0%
GCTCAGAAGTCACATTCAGA+TGG + chr1.1:1122270-1122289 MS.gene27039:CDS 45.0%
TATCTCTGAGCAAACATCGG+AGG - chr1.1:1121915-1121934 None:intergenic 45.0%
TCAAGGAACACCTTCAAGTC+AGG + chr1.1:1123787-1123806 MS.gene27039:CDS 45.0%
TCATTATCTCCAGCTCTGCA+GGG + chr1.1:1124265-1124284 MS.gene27039:CDS 45.0%
TCCAAAGTCTCTGATCTGTC+AGG - chr1.1:1123461-1123480 None:intergenic 45.0%
TGCACATCTGGACTTGATCT+TGG - chr1.1:1124166-1124185 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG + chr1.1:1121946-1121965 MS.gene27039:CDS 45.0%
TTGCCTAAGGATCAGCTGAA+TGG + chr1.1:1123995-1124014 MS.gene27039:CDS 45.0%
TTTGCTCGACCAGGATGTAT+CGG + chr1.1:1123304-1123323 MS.gene27039:CDS 45.0%
! GCTTGCTTGAAAGTGTGAGT+TGG - chr1.1:1122946-1122965 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG + chr1.1:1121729-1121748 MS.gene27039:CDS 45.0%
! TCAGGATCAGCATTTCTGGA+AGG - chr1.1:1123398-1123417 None:intergenic 45.0%
! TCGTACAAGGAGCTGCATTT+TGG - chr1.1:1122241-1122260 None:intergenic 45.0%
! TGTGTAGCTTGCATGAAACG+GGG - chr1.1:1124109-1124128 None:intergenic 45.0%
! TTCACCGAAACCTGACTTGA+AGG - chr1.1:1123800-1123819 None:intergenic 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG + chr1.1:1122189-1122208 MS.gene27039:CDS 45.0%
! TTTGGTTTCGTCCGACTGTT+CGG - chr1.1:1122808-1122827 None:intergenic 45.0%
!! GAAGGTGTTCCTTGAGATTC+AGG - chr1.1:1123782-1123801 None:intergenic 45.0%
!! TATGTAACCGTCTTTTCGGG+AGG - chr1.1:1123011-1123030 None:intergenic 45.0%
AAGTTGCAAGCTGCTGTTCG+TGG + chr1.1:1122162-1122181 MS.gene27039:CDS 50.0%
AGGCTCAACAGCATGCTCTT+TGG - chr1.1:1123660-1123679 None:intergenic 50.0%
AGGTTAATCACATGCGGTGG+TGG + chr1.1:1120800-1120819 MS.gene27039:CDS 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG + chr1.1:1122163-1122182 MS.gene27039:CDS 50.0%
CACCGAAACTGAGAGTAAGG+TGG + chr1.1:1121949-1121968 MS.gene27039:CDS 50.0%
CATTCCTTACCTGGTGCAAC+TGG + chr1.1:1124214-1124233 MS.gene27039:CDS 50.0%
CTCGGATGGTAGAGGTGAAT+CGG - chr1.1:1122892-1122911 None:intergenic 50.0%
CTTACCAGTTGCACCAGGTA+AGG - chr1.1:1124221-1124240 None:intergenic 50.0%
GAAACTGTTAATGGCTCCCG+TGG + chr1.1:1123602-1123621 MS.gene27039:CDS 50.0%
GCAAGCTACACAATCTGCCA+AGG + chr1.1:1124117-1124136 MS.gene27039:CDS 50.0%
GGCAGTCTTCTCTTCATCCT+CGG - chr1.1:1122910-1122929 None:intergenic 50.0%
GTCATTATCTCCAGCTCTGC+AGG + chr1.1:1124264-1124283 MS.gene27039:CDS 50.0%
GTCTTCTCTTCATCCTCGGA+TGG - chr1.1:1122906-1122925 None:intergenic 50.0%
GTGACTCAACCGATACATCC+TGG - chr1.1:1123316-1123335 None:intergenic 50.0%
TCAGACCAACTAGAGACCGA+GGG + chr1.1:1123173-1123192 MS.gene27039:CDS 50.0%
TCTTCATCCTCGGATGGTAG+AGG - chr1.1:1122900-1122919 None:intergenic 50.0%
TCTTTCCCTCGGTCTCTAGT+TGG - chr1.1:1123181-1123200 None:intergenic 50.0%
TGATCTCGTGGATCTAGGCT+CGG - chr1.1:1121486-1121505 None:intergenic 50.0%
TGGATCAAGCAGTAGACGCA+GGG + chr1.1:1123847-1123866 MS.gene27039:CDS 50.0%
TTCGTGGGCACTTGGTTAGA+AGG + chr1.1:1122178-1122197 MS.gene27039:CDS 50.0%
! GGTTCTTGATCAGTGGGTTC+AGG - chr1.1:1124052-1124071 None:intergenic 50.0%
! TTAATCACATGCGGTGGTGG+TGG + chr1.1:1120803-1120822 MS.gene27039:CDS 50.0%
!! GCATGCTCTTTGGAGTTCTC+AGG - chr1.1:1123650-1123669 None:intergenic 50.0%
!! TCAGGCTCAAGAGTGTCTGT+CGG + chr1.1:1123914-1123933 MS.gene27039:CDS 50.0%
ACCTGGTGCAACTGGTAAGC+AGG + chr1.1:1124222-1124241 MS.gene27039:CDS 55.0%
AGAGGCTCCTCCCGAAAAGA+CGG + chr1.1:1123001-1123020 MS.gene27039:CDS 55.0%
ATGGTTAGGCGTGTGTCGTC+TGG + chr1.1:1124824-1124843 MS.gene27039:intron 55.0%
CCTGGTGCAACTGGTAAGCA+GGG + chr1.1:1124223-1124242 MS.gene27039:CDS 55.0%
CGATTCACCTCTACCATCCG+AGG + chr1.1:1122890-1122909 MS.gene27039:CDS 55.0%
CTCAGACCAACTAGAGACCG+AGG + chr1.1:1123172-1123191 MS.gene27039:CDS 55.0%
CTGGATCAAGCAGTAGACGC+AGG + chr1.1:1123846-1123865 MS.gene27039:CDS 55.0%
GAGCATGTCGTGCTCGTACA+AGG - chr1.1:1122254-1122273 None:intergenic 55.0%
TCAAATTCGGGTAGGCCGAG+TGG + chr1.1:1123281-1123300 MS.gene27039:CDS 55.0%
TCCTGGTCGAGCAAACCACT+CGG - chr1.1:1123299-1123318 None:intergenic 55.0%
TGGTTAGGCGTGTGTCGTCT+GGG + chr1.1:1124825-1124844 MS.gene27039:intron 55.0%
! CTCGGTCTCTAGTTGGTCTG+AGG - chr1.1:1123174-1123193 None:intergenic 55.0%
AGCTGCTGTTCGTGGGCACT+TGG + chr1.1:1122170-1122189 MS.gene27039:CDS 60.0%
CCAGCTCTGCAGGGCACAAA+GGG + chr1.1:1124274-1124293 MS.gene27039:CDS 60.0%
CCCTGCTTACCAGTTGCACC+AGG - chr1.1:1124226-1124245 None:intergenic 60.0%
CTGCAGGGCACAAAGGGCAA+TGG + chr1.1:1124280-1124299 MS.gene27039:CDS 60.0%
GGTTAGGCGTGTGTCGTCTG+GGG + chr1.1:1124826-1124845 MS.gene27039:intron 60.0%
TCCAGCTCTGCAGGGCACAA+AGG + chr1.1:1124273-1124292 MS.gene27039:CDS 60.0%
TCGTGGATCTAGGCTCGGCA+TGG - chr1.1:1121481-1121500 None:intergenic 60.0%
!! AGACGCAGGGTACTGTCTGC+TGG + chr1.1:1123860-1123879 MS.gene27039:CDS 60.0%
CCCTTTGTGCCCTGCAGAGC+TGG - chr1.1:1124277-1124296 None:intergenic 65.0%
! AGGCGTGTGTCGTCTGGGGT+TGG + chr1.1:1124830-1124849 MS.gene27039:intron 65.0%
! GCGTGTGTCGTCTGGGGTTG+GGG + chr1.1:1124832-1124851 MS.gene27039:CDS 65.0%
! GGCGTGTGTCGTCTGGGGTT+GGG + chr1.1:1124831-1124850 MS.gene27039:intron 65.0%
!! GCCGAGTGGTTTGCTCGACC+AGG + chr1.1:1123295-1123314 MS.gene27039:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 1120776 1124866 1120776 ID=MS.gene27039
chr1.1 mRNA 1120776 1124866 1120776 ID=MS.gene27039.t1;Parent=MS.gene27039
chr1.1 exon 1120776 1120856 1120776 ID=MS.gene27039.t1.exon1;Parent=MS.gene27039.t1
chr1.1 CDS 1120776 1120856 1120776 ID=cds.MS.gene27039.t1;Parent=MS.gene27039.t1
chr1.1 exon 1121698 1122030 1121698 ID=MS.gene27039.t1.exon2;Parent=MS.gene27039.t1
chr1.1 CDS 1121698 1122030 1121698 ID=cds.MS.gene27039.t1;Parent=MS.gene27039.t1
chr1.1 exon 1122126 1122317 1122126 ID=MS.gene27039.t1.exon3;Parent=MS.gene27039.t1
chr1.1 CDS 1122126 1122317 1122126 ID=cds.MS.gene27039.t1;Parent=MS.gene27039.t1
chr1.1 exon 1122493 1122573 1122493 ID=MS.gene27039.t1.exon4;Parent=MS.gene27039.t1
chr1.1 CDS 1122493 1122573 1122493 ID=cds.MS.gene27039.t1;Parent=MS.gene27039.t1
chr1.1 exon 1122663 1124310 1122663 ID=MS.gene27039.t1.exon5;Parent=MS.gene27039.t1
chr1.1 CDS 1122663 1124310 1122663 ID=cds.MS.gene27039.t1;Parent=MS.gene27039.t1
chr1.1 exon 1124832 1124866 1124832 ID=MS.gene27039.t1.exon6;Parent=MS.gene27039.t1
chr1.1 CDS 1124832 1124866 1124832 ID=cds.MS.gene27039.t1;Parent=MS.gene27039.t1
Gene Sequence

>MS.gene27039

ATGGTGAAATCTACTTCTTGTTTAAGGTTAATCACATGCGGTGGTGGTGGTGACAAAGAAGATCACCATGTTGTTTCTGAGGTGAATCTCTCTCTTAGATAATTCCGAGGTTTAGTGTTTTTCACAATTTTTCAGTTTTATGTGTGTGTTTTTGTTTGATCCGAGGATGTTTCATGCAACCAACTTCGTTTCTTTTCTTATTATCACGTTTCTTGCATTCATTAATTACTTAATTAATTTGCTGTTTAATGTTTTATTTTCTTTCTATTTTTGGATTTATATTCAAGATTTCGTTCATAATTGAATAGTTTTAAGGTGCTGTTTGGATAACATTGAATAGGAAAATTCATGTTTTTTTTTTTTTTGAATTTCCTTTTTTTTTTTTTTTTTGTGATCTTTGATCTCAAGATTAGTAATGAATATCATGTAGTTGATGATGCTCTCTGAAAATCATTTTCCTTGCTTGATTTTACTTCTTTACTAATTTTTCTTGTTTATTTTGATAATCACTAGTATTTCACGATGCTAGAAAATCTGATTATTGTGAATTAATTAGTATTTTTCACATAATAATTGAAGTAAATTAAATTCATGAGTGTGAATTATATACATCTTTATGCCAATGGGCTGTGACTTTTGATGTAAGTTGTACAATTTACGGCCGTTTTTTGTGCTTAGTTGATATGAACTTAGTTATTTGAACCATGCCGAGCCTAGATCCACGAGATCAAGTTTTGTGCATAAAACTTAGTTATAAACATCTAGATAAAGTTTGTGCATCGTATAAGTAAAATGAGATAGTTGCACATTGTACTGTAGTAAGTTTTATTGAATAAGTGAAATTTTGATCGTGATTCAGGAAATATATATTTATGCATTCAAGTTTGTTCTCACAATTGATTTTTCTTTAATGATGTTCCAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAACAACAGAGACCACATCTTCAGCAAATAAGGAGACTTCAGAATATCCAAGTATTAGTTTTCAATCCTCAGCTGAGCCTAATGTTGTTGAGAAGATTTGTACGACAGATTTCTCTAATGAGAAGCCACAGTTATCCTCCGATGTTTGCTCAGAGATACCAGAAACAATTGTCACCGAAACTGAGAGTAAGGTGGATGTCAATCCACCAGAATCTGCTGTGATAATCATCCAGGCTTCAATTAGAGGATATTTGGTATGTTTCTTTTCTGAGGTTTTATGAATCAAAATCTTGTAAGGAGAAAACGCTCATTTTCCTTTTATAAATCTTTTGTTCGTGTTTCTTTTTAGGCTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTTAGAAGGCATGCTGTTGGAACATTGCGATGTGTTCAAGCTATTGCCAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACATTCAGATGGAAAAAATGATGACTCAAAAACTACGGTATATCTATTTGAATTTACTTCGTAGTTACTAATTTCATGATACCAAAATTTTATTCGTTTAATAGTTGTGGTTTCATTGAAGAGATATGTTATTACATTTACGTTACTATCAGATGATATGTGCTGCAAGCCTTGCTCTAAGTGTGTCGTTTTATTTTTTTACTGTGGTTTAGGATAATGAGCATTACACTGCTGAATCAAATGTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTTCTCAGGTACAATTAACATATTGTTTGTTTTGCCTGTTTAACGTCATCCGTTTGTTCATTCATACTAAATCTTCTGTTGTTTCCTTCCATTGAAGCTGTTGGAATCAACACCAAAAAACAAACCTATCCATGTCAAATGTGATCCTTCTAAAGGTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTTTGTTTCGGCAAAAGATTCTGCAGAAGATAAAAAGCCAATTTGTACGACCGAACAGTCGGACGAAACCAAAGATAGCACTCATGCATCTCAATCGGAAACAGATATTCCATCTCAAGTTATTCTTCAGTTAGCCGATTCACCTCTACCATCCGAGGATGAAGAGAAGACTGCCACTTACTATGATACCAACTCACACTTTCAAGCAAGCCTCTCTTCATCTTCTCTAATAAATGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTACATATGATTCTAAAGTAACCTCCACTGAAATTGATTCTTTCCAAAATGAAATAATGGAATCAAATGCAAGTGTCGGACATGAGCCTAATTCTCCTCAGAATCAAGAAAGTGATGAACAGTACAAACAATCAACGAAAGCATTTGCCTCAGACCAACTAGAGACCGAGGGAAAGAAAATTACATTTGGATCAAGGAAGTTAAGCAATCCCTCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATTCAAATTCGGGTAGGCCGAGTGGTTTGCTCGACCAGGATGTATCGGTTGAGTCACAAGCAGATAGTGCATATATATCAAAAGAGTTCATTTCATCTGAGAATTCTATGCCCTATCCTTCCAGAAATGCTGATCCTGAAAGTGGTACCGTACTATCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAATCGAGCACGATGCCAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAAGATTGATCATGGTGTTGAAGCAAATACTCCGACTTCTAATTTACCTATCTCTGATTCGGATCAATTAGAAACTGTTAATGGCTCCCGTGGCAATGTTGTTGATTCAGTGATGCCTGAGAACTCCAAAGAGCATGCTGTTGAGCCTGAGAAAATTGCATCTGACTTGTTTAGAGAACAAACTGAGACTGTTCTGCAGGATTTCACGTATTCTCAACAAGCTTCACCGGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCGGTGAAACATAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGTAGACGCAGGGTACTGTCTGCTGGTAACAAGTCTCCTGCTAATTCAAATCAAGATTCAGGCTCAAGAGTGTCTGTCGGTACCAAGTCTCCTGCGAATGCAAATCATGATTCAGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGCTGAATGGAAAGAGACGCAATTCATTTGGCTCAATAAAACCTGAACCCACTGATCAAGAACCTACCAAAGATAATAGTAGTAGCAATAATACTCTTCCCCGTTTCATGCAAGCTACACAATCTGCCAAGGCCAAGATAAATGCAAATTCCTCTCCAAGATCAAGTCCAGATGTGCATGACACTGACATTAATATCAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAAGCAGGGTTCTCCGCGTGTCGAACAGTCATTATCTCCAGCTCTGCAGGGCACAAAGGGCAATGGTTCATCTGGTAAATTTCTACAACATTCCTTTCTAAAGATTACTTGCTACTTTGGTTTTTTAAACTTTACCATACCTAACATTTTCTTAGTTTTAGAATAGTCTTATGATATGTGACATCACATTGGTCCCCCGATTATATACCAAAAAATTGATCCTTATATAAAAGCAATGCCATTTTTCTTTCGTCAAGGACTAACATAATGTCATTATATAGACAGATTTTATGGCAAAAATGTGACATTTAAGGACTAATTTGTTATGATAAATACCTTTCGAGGATCAACTTTATATTTTTATCGAATTATGCTTCTAACCTTATTTATAACCAAAGAATATAATGACATACTTATTCATGTGACAGAGCTTTAGACGATATTTCTTTTGACTCTATGAATGATTACTTAAGAATTTTTTATCTTTGAAATTGTCATTTTCAGCTTAGTTTAGGGTTTATTTTCTGTTCCTAATATAATATAAGTTCTACATACATGGTAAGAAAAGAAATGTTGGAATTGTTAATATGGTTAGGCGTGTGTCGTCTGGGGTTGGGGATGTGTTCTTAG
Protein sequence

>MS.gene27039.t1

MVKSTSCLRLITCGGGGDKEDHHVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSSANKETSEYPSISFQSSAEPNVVEKICTTDFSNEKPQLSSDVCSEIPETIVTETESKVDVNPPESAVIIIQASIRGYLARRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQLLVRARHAQKSHSDGKNDDSKTTDNEHYTAESNVKHTSVEKLLSNKFASQLLESTPKNKPIHVKCDPSKGDSAWKWLERWMFVSAKDSAEDKKPICTTEQSDETKDSTHASQSETDIPSQVILQLADSPLPSEDEEKTATYYDTNSHFQASLSSSSLINDNLEEAPPEKTVTYDSKVTSTEIDSFQNEIMESNASVGHEPNSPQNQESDEQYKQSTKAFASDQLETEGKKITFGSRKLSNPSFIAAQSKFEELSSNSNSGRPSGLLDQDVSVESQADSAYISKEFISSENSMPYPSRNADPESGTVLSISSTLDSPDRSETLEIEHDAKDLVEGIVNPENKIDHGVEANTPTSNLPISDSDQLETVNGSRGNVVDSVMPENSKEHAVEPEKIASDLFREQTETVLQDFTYSQQASPGSYMTIPESQGTPSSQVSVKHKENKINKTGSSSRRRVLSAGNKSPANSNQDSGSRVSVGTKSPANANHDSGSRGSREQLPKDQLNGKRRNSFGSIKPEPTDQEPTKDNSSSNNTLPRFMQATQSAKAKINANSSPRSSPDVHDTDINIKKRHSLPGATGKQGSPRVEQSLSPALQGTKGNGSSGVCRLGLGMCS