AlfalfaGEDB | MS.gene27232

M. sativa cultivar XinJiangDaYe / MS.gene27232

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27232.t1	RHN41853.1	95.3	383	17	1	2	384	27	408	2.30E-203	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27232.t1	Q9SII6	66.0	338	113	1	43	380	62	397	4.3e-129	462.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27232.t1	A0A396GMV8	95.3	383	17	1	2	384	27	408	1.7e-203	718.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04991	MS.gene27232	-0.809128	2.21E-50	-1.69E-46
MS.gene051184	MS.gene27232	0.812064	5.12E-51	-1.69E-46
MS.gene056849	MS.gene27232	0.819208	1.31E-52	-1.69E-46
MS.gene057999	MS.gene27232	0.818488	1.91E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene27232	MS.gene96575	PPI
MS.gene65103	MS.gene27232	PPI
MS.gene66065	MS.gene27232	PPI
MS.gene77229	MS.gene27232	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27232.t1	MTR_8g073560	97.644	382	8	1	3	384	14	394	0.0	766
MS.gene27232.t1	MTR_5g023980	75.150	334	81	1	44	375	53	386	0.0	528
MS.gene27232.t1	MTR_8g073560	96.512	258	7	2	2	258	27	283	0.0	507
MS.gene27232.t1	MTR_8g073700	93.846	260	14	2	120	378	19	277	0.0	503
MS.gene27232.t1	MTR_3g115490	63.372	344	121	2	28	369	42	382	3.37e-155	443
MS.gene27232.t1	MTR_2g096950	59.568	324	131	0	39	362	45	368	2.53e-152	436
MS.gene27232.t1	MTR_5g038870	61.446	332	126	1	38	369	46	375	8.09e-152	435
MS.gene27232.t1	MTR_5g099130	64.263	319	109	1	42	360	68	381	3.02e-151	432
MS.gene27232.t1	MTR_5g099130	64.263	319	109	1	42	360	75	388	1.31e-150	431
MS.gene27232.t1	MTR_5g099130	64.263	319	109	1	42	360	79	392	1.34e-150	431

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27232.t1	AT2G17220	68.047	338	106	1	43	380	62	397	2.03e-172	487
MS.gene27232.t1	AT2G17220	68.047	338	106	1	43	380	61	396	2.66e-172	487
MS.gene27232.t1	AT4G35600	63.158	361	118	2	4	364	35	380	5.39e-171	484
MS.gene27232.t1	AT4G35600	63.158	361	118	2	4	364	34	379	6.62e-171	483
MS.gene27232.t1	AT2G28930	61.709	316	121	0	41	356	42	357	4.27e-152	436
MS.gene27232.t1	AT2G28930	61.709	316	121	0	41	356	45	360	7.82e-152	435
MS.gene27232.t1	AT2G28930	61.709	316	121	0	41	356	53	368	8.36e-152	435
MS.gene27232.t1	AT1G07570	61.635	318	122	0	39	356	39	356	1.15e-151	434
MS.gene27232.t1	AT1G07570	61.635	318	122	0	39	356	39	356	1.15e-151	434
MS.gene27232.t1	AT1G07570	61.635	318	122	0	39	356	39	356	1.15e-151	434

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Find 88 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTATAAAGGTTGGT+TGG	0.474192	8.3:+29101294	MS.gene27232:CDS
AAGAGTGATGTGTATGGCTT+TGG	0.465372	8.3:+29104924	MS.gene27232:CDS
AAGGCTCTCTCACCCAAACT+TGG	0.506037	8.3:+29102967	MS.gene27232:CDS
ACAACAAAACCTAGTTGAAT+GGG	0.498972	8.3:+29105007	MS.gene27232:CDS
ACAAGAATCAAAATAGCTAT+TGG	0.431182	8.3:+29103209	MS.gene27232:CDS
ACAATCACATGTAACTACCA+GGG	0.708704	8.3:+29103896	MS.gene27232:CDS
ACATGTAACTACCAGGGTCA+TGG	0.511179	8.3:+29103902	MS.gene27232:CDS
ACCAGGGTCATGGGGACTTA+TGG	0.345960	8.3:+29103912	MS.gene27232:CDS
ACCATAAGTCCCCATGACCC+TGG	0.610715	8.3:-29103913	None:intergenic
ACTCTTTCTCCTGCTAAAGC+TGG	0.491887	8.3:+29101325	MS.gene27232:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAAGAGTTTGGAAGA+TGG	+	chr8.3:29102081-29102100	MS.gene27232:intron	30.0%
AAGAGAAAACAAAGTGACAT+TGG	-	chr8.3:29104175-29104194	None:intergenic	30.0%
AAGATGGGTGATTTAGAAAT+TGG	-	chr8.3:29100927-29100946	None:intergenic	30.0%
AAGCCCTATAAAGACTAATT+AGG	-	chr8.3:29104249-29104268	None:intergenic	30.0%
ACAACAAAACCTAGTTGAAT+GGG	+	chr8.3:29105007-29105026	MS.gene27232:CDS	30.0%
ACCTTTCACTTTCATAATCT+TGG	+	chr8.3:29102293-29102312	MS.gene27232:intron	30.0%
ACTCAAGGATAATTAATGGA+AGG	-	chr8.3:29102175-29102194	None:intergenic	30.0%
ATGTCTAACACTAACACATA+TGG	-	chr8.3:29104420-29104439	None:intergenic	30.0%
ATGTCTGACATTAACACATA+TGG	-	chr8.3:29104759-29104778	None:intergenic	30.0%
CATTAATTATCCTTGAGTCA+AGG	+	chr8.3:29102177-29102196	MS.gene27232:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	29100828	29105301	29100828	ID=MS.gene27232
chr8.3	mRNA	29100828	29105301	29100828	ID=MS.gene27232.t1;Parent=MS.gene27232
chr8.3	exon	29100828	29100831	29100828	ID=MS.gene27232.t1.exon1;Parent=MS.gene27232.t1
chr8.3	CDS	29100828	29100831	29100828	ID=cds.MS.gene27232.t1;Parent=MS.gene27232.t1
chr8.3	exon	29101059	29101414	29101059	ID=MS.gene27232.t1.exon2;Parent=MS.gene27232.t1
chr8.3	CDS	29101059	29101414	29101059	ID=cds.MS.gene27232.t1;Parent=MS.gene27232.t1
chr8.3	exon	29102947	29103082	29102947	ID=MS.gene27232.t1.exon3;Parent=MS.gene27232.t1
chr8.3	CDS	29102947	29103082	29102947	ID=cds.MS.gene27232.t1;Parent=MS.gene27232.t1
chr8.3	exon	29103177	29103319	29103177	ID=MS.gene27232.t1.exon4;Parent=MS.gene27232.t1
chr8.3	CDS	29103177	29103319	29103177	ID=cds.MS.gene27232.t1;Parent=MS.gene27232.t1
chr8.3	exon	29103840	29103963	29103840	ID=MS.gene27232.t1.exon5;Parent=MS.gene27232.t1
chr8.3	CDS	29103840	29103963	29103840	ID=cds.MS.gene27232.t1;Parent=MS.gene27232.t1
chr8.3	exon	29104910	29105301	29104910	ID=MS.gene27232.t1.exon6;Parent=MS.gene27232.t1
chr8.3	CDS	29104910	29105301	29104910	ID=cds.MS.gene27232.t1;Parent=MS.gene27232.t1

Gene Sequence

>MS.gene27232

ATGGGTCTCTGTTTTTCCTTTCTCTGCCCCTCCTCTGCACCCCCTCAATCTTCTTCCTTCAACAGACCTCTTTCTTCAGGCAAGTCTTCAACTTTTCCAATTTCTAAATCACCCATCTTCACAAATTTTCAATTCCACTCAACATGGGCCATTCCATTTTCTCAAAAAGTTTCATCAAAAGTTTTTCATAATAACACTTTCCTCTGTTTCCTCTGTTTTCTCTGTTTTCAGGTTCAACAAGCACTGTTGGATTCTCAGCAACTACAAGCAGTGCTGGAAGAAGCCAATTCTCTGAGGTAGCAAGTGGAAGCATTGATGATACTAATGAAGGAGGATCTCTTCCTTATCCTTCACCAAATGGACAAATTCTTGAAAGACCAAATTTGAAGGTTTTTAGTTTTATTGAATTGAAAGCTGCTACAAAAAGCTTCAAATCTGATACATTACTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTGGATGAGAAAACTCTTTCTCCTGCTAAAGCTGGTTCTGGAATGGTTGTTGCTATCAAAAAATTGAACTCTGAAAGTACTCAAGGATTTCAAGAATGGCAGGTGAATTTAATTTCTACTCTTAAGTTTTTTATTGATTGAATCACTAATTTAGTGTACACAATTTTAGGCTTTCAATCTATCAATTTATAGTTTGTGAAATGATTGATATTTTATAGTAGTATTTGAAATTAGAAACATTTGATCATTTTAGTTCTTTTGAAAAATAAAAATTTAGATTTAGATTATGGGAAGAATCACTAATTATGAGGAATTCTAAACTAAAATCTAAATTACAGTGGATGTGAGCAGAATGTCTAACCATATGCGTCAATCTAGTTGATAATAAATTTACTCTTAGAAATTGTTATCTAAGCCTAATGTGATTAATGATTTTAAATTTAGAGATCATTTCCAAATTTCATTAGTTTTATGGATTAAATTAACCCCAATCTACAATTTTATGGACTAAATTTATCTCACTTATTTTGTTCTTTTATTTGTGGTTGAAAATGTGGAAGATTGTTTGGTTTAAAAAAAACATGATGTTGAAGAGTATGTTTTCATTTCTAGTTGAATTAGAATTGGTTAATAATTTTGTACCAAAAAAAAAAAAGAATTGGTTAATAATGATTACTAGGGTTGTCATTAATTAATATGGCTTAATGAACATGATGTTGCCATGTAGAGTATTTTTTACTATATTCAATAGGAATGTACATTTAATTCAAAATCAAGAGTTTGGAAGATGGTCATGGAATTGGAATTGGAATGCAGCAGGAAATTGTATATGGGCCCCACTAAATGATCTGTCCTTCTTCCTTCCATTAATTATCCTTGAGTCAAGGACTATTAAAATATTGAAAAATAGTACATTGTTGCCTTAGTTTCCAAACTATTGAATTGTTGACTCAAAGATAGATTATTTAAAACGGGCGTTTACCTTTCACTTTCATAATCTTGGCTGTTGTGTGACTTGTGATATCTCTCCTTGACTTTATCTTTGAATAAGGGAAAACGGTATTATTTTCCTTGTGTCTTTGTTTGAATGAGTATAATGTACATATATTGCACATTGCATTCCCATTAGGCAAAGTGGACTATATTTGAAGTTATAATTAATGTACACGTGGGAGCCATAACAATGTTTGCTTGTGGAAAGTAGCAAATAACAATGTTTGCTTTGAGTACATGTGAGCCATAAATGATACTATAAACTATAATGTAAAATGCAAAATTCATATGAACTTGTATATCAATAACATGCTATGATGTATTGATTTTTTTTTTCTTCATATTGCATTCATACCTATAGTGTAGCCAATTAGCCATCAACAAAATATGTGCATGTACTTTTATATGTGAATCTTACAAATGTTTTCCAAAAATGGTACTAGTAAACTAGACAAATTAATTTTGACAGTGTAAAAAGTTTTATATCGTTAATTAATCACAACCGACCATATGTGTGACTTTCGAAGTAATTATGATTGAAGTTAAACATTAGTAACGATTTGACAATTATGAAACAAATGCCCTCATCTGATGAATTCTTATTTAGTAACATATGTTTTTGTGTTGATTGAACAATGCAGTCAGAAGTTAACTTCTTAGGAAGGCTCTCTCACCCAAACTTGGTGAAGCTATTAGGTTATTGTTGGGACGACGACGAGCTTCTTCTTGTCTACGAGTTCATGCCAAAAGGAAGTCTGGAGAATCATCTCTTCAGAAGTATGTATTCTGGTAAAGACAGTTAATTAAAATGAAAATTTTTCTGGTCTTGGTTTTGAGTATAATTTGGTTTATCTGTTGTGTTCTTTTTCAGGAAATCCTAACATTGAACCACTTTCTTGGAACACAAGAATCAAAATAGCTATTGGTGCAGCTCGTGGTTTGGCTTTCTTGCATGATTCAGCACAGCAAGTCATATACAGAGATTTTAAGGCTTCAAATATACTCCTTGATGGGGTCAGTTATTTTTGTCCATACAACTTATTTTCATAAGTTTTGTACAGTTTACCTCCCGGCCGAACTTTGGATTACCGGAGACCCTTTCTCCTAGTAACCGTTGACACCAAATATAAGTTATGAGGAATAGTTACAAAACTAGCTTATAGTTTATATGAAAATAGCTTGACTTCATTTTAGCTTGTCATAATAATAATTTGTACATAGAAACTTATGTGATAAGTGATTATGCTATAAATACCTAAATAAAATGTTTATCCAAACAAAACTATTTGATGTTTTTTTAAACAACCAATATTCGTATGTTAATTGTTGATTTTTCAATATTTGTTAAAGGTGAGAATCGAATCCGAGACCACCCTTTATCACTCCACTCCTTAACTCTCCAACTTCAGCCATCAAACCAACCTTACCCTAGAACTATCTGATGTTTTGAATGCATATCTTTTAAGTAACAAATTGATGTTTTTTAATGCGAAATTCCACAGATCATTTTGATAACACATCTTGTATCTTGCAGAGTTACAATGCAAAAATCTCAGATTTCGGATTAGCTAAATTGGGGCCTTCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGGACTTATGGTTATGCTGCTCCAGAATACATTGCAACAGGTAATCATATATATATATCCACTAAAATTGGCAATTGAAACATCATTCAGTTTATGTTTTGGCTTATTAGTGAGTGATACTGCTTAATGTGAGCCAAGACTGAATTGATGATATACTAAGCAAGAAGGAAATGGAAGTAGTATAATAAAGGGAAAATCCAAGGGGGTGGTTGGTTTCAAAATGTTTTCTATTTTCACTGATCATTATACCAATGTCACTTTGTTTTCTCTTCTCACATTTGTGGAGATTGAATTTTTTTGAGATCTCACATTAAAGATATGACCTAATTAGTCTTTATAGGGCTTGGATAGTCCACACTTATTTTTAGGGTTGAGTTAGTCCTGACCTAAATTCTAAGACGATACTAACTATGCAGTATTGACACAAACACGACACCGGTAGTATGTCACGCACAGTGATAATAATTTAACAAAATGAAAGTGGCGAAGGTAACCATATGTGTTAGTGTTAGACATCGACTCATGTCAGACACCAAACACACTTTCAATTTTTTATCTTTTGTATTTTCACTGATCATTATACAAATGCCACTTTGTTTTCTTTTCTCAAAGATTTGTGGAGATTGAAAATTGTTGAGATTTCACATCAGAGATATGACCTAATTAGTCTCTACAGGGCTTGAACAATCCTCACTTATTTTTAGGGTTGAGTTAGTCCTGGCCTAAATTCTAAGACGATACTAACTAAGAAGTATTGACACAGACACGACACCGATAGTATGTCACTTACAGAGTGATAATAATTTAACAAAATGAAAGTGGCTGAAGGTAACCATATGTGTTAATGTCAGACATCAACACATGTCAGACACCAGACACACTTTCAAGGCTTCTACCCAAAGTGTTGGTGAAGTTTATTATAAATCTATTATTGAGCAAAAAAAAAAAAACTAACATGTTGTATGGACTGCATTACAATTCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGCTTTGGTGTGGTGCTGTTAGAAATCCTAACAGCCATGAGGGCATTGGACACAAAGAGGCCAACAGGACAACAAAACCTAGTTGAATGGGTGAAACCATTTCTGTCAAATAAGAAAAAGTTGAAAGGCATAATGGATGCTAGAATAGAAGGACAATACTCACCAAAGGCAGCAGTACAAGCAGCAGCACTTTCTCTAAAGTGCTTAGAAAATGACCCTAAACAACGTCCTTCTATGAAAGAAGTGCTTGAATCATTGGAAGCTATTGAAGCAATTCAGGTCAAAACCAAAAGATCCAACAACAATTCTCATCAACCTCCAGTTCTTCAAGCTGCTAGGCACCAGAGAGTTGTGAAAGTATAA

Protein sequence

>MS.gene27232.t1

MGSTSTVGFSATTSSAGRSQFSEVASGSIDDTNEGGSLPYPSPNGQILERPNLKVFSFIELKAATKSFKSDTLLGEGGFGKVYKGWLDEKTLSPAKAGSGMVVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHDSAQQVIYRDFKASNILLDGSYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTAMRALDTKRPTGQQNLVEWVKPFLSNKKKLKGIMDARIEGQYSPKAAVQAAALSLKCLENDPKQRPSMKEVLESLEAIEAIQVKTKRSNNNSHQPPVLQAARHQRVVKV