Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27788.t1 | XP_024627930.1 | 65.1 | 447 | 130 | 4 | 1 | 440 | 1 | 428 | 9.10E-134 | 487.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27788.t1 | A0A396I0R2 | 64.3 | 540 | 123 | 8 | 1 | 524 | 1 | 486 | 3.6e-132 | 481.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05351 | MS.gene27788 | 0.936574 | 1.40E-97 | -1.69E-46 |
| MS.gene057814 | MS.gene27788 | 0.987546 | 1.19E-170 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27788.t1 | MTR_0029s0140 | 82.639 | 144 | 25 | 0 | 370 | 513 | 241 | 384 | 9.14e-68 | 224 |
| MS.gene27788.t1 | MTR_0029s0140 | 82.051 | 78 | 14 | 0 | 162 | 239 | 162 | 239 | 3.63e-41 | 152 |
| MS.gene27788.t1 | MTR_2g102860 | 82.734 | 139 | 24 | 0 | 378 | 516 | 13 | 151 | 1.08e-67 | 215 |
| MS.gene27788.t1 | MTR_5g080310 | 79.195 | 149 | 27 | 1 | 372 | 520 | 122 | 266 | 2.85e-67 | 218 |
| MS.gene27788.t1 | MTR_4g017750 | 82.517 | 143 | 21 | 1 | 371 | 513 | 110 | 248 | 1.11e-66 | 216 |
| MS.gene27788.t1 | MTR_2g020090 | 68.153 | 157 | 49 | 1 | 357 | 513 | 49 | 204 | 1.18e-66 | 215 |
| MS.gene27788.t1 | MTR_3g058800 | 72.535 | 142 | 38 | 1 | 372 | 513 | 10 | 150 | 8.16e-65 | 208 |
| MS.gene27788.t1 | MTR_6g463490 | 82.906 | 117 | 20 | 0 | 400 | 516 | 3 | 119 | 1.33e-62 | 201 |
| MS.gene27788.t1 | MTR_1g023240 | 75.658 | 152 | 31 | 1 | 359 | 510 | 23 | 168 | 2.18e-61 | 203 |
| MS.gene27788.t1 | MTR_4g023110 | 73.134 | 134 | 35 | 1 | 370 | 503 | 7 | 139 | 1.97e-60 | 196 |
| MS.gene27788.t1 | MTR_8g027455 | 54.487 | 156 | 62 | 4 | 371 | 520 | 24 | 176 | 2.93e-42 | 156 |
| MS.gene27788.t1 | MTR_1g077650 | 66.346 | 104 | 34 | 1 | 371 | 474 | 46 | 148 | 7.99e-40 | 143 |
| MS.gene27788.t1 | MTR_7g035425 | 37.576 | 165 | 88 | 5 | 178 | 330 | 179 | 340 | 6.95e-24 | 103 |
| MS.gene27788.t1 | MTR_7g037680 | 29.858 | 211 | 116 | 5 | 283 | 492 | 17 | 196 | 6.42e-20 | 89.7 |
| MS.gene27788.t1 | MTR_5g053700 | 80.000 | 50 | 6 | 1 | 464 | 513 | 1 | 46 | 4.79e-18 | 78.6 |
| MS.gene27788.t1 | MTR_2g077640 | 29.032 | 217 | 110 | 7 | 240 | 452 | 34 | 210 | 1.01e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 172 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 1.2:+5699279 | MS.gene27788:CDS |
| CATGATTGAGGGTTAGTCTT+AGG | 0.184506 | 1.2:-5700994 | None:intergenic |
| TGTGGGAGGGACCTTGAGCC+TGG | 0.232485 | 1.2:-5701186 | None:intergenic |
| TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 1.2:-5698846 | None:intergenic |
| GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 1.2:-5698847 | None:intergenic |
| CCCGCCTATCTTTGCTGAAT+TGG | 0.275847 | 1.2:+5699531 | MS.gene27788:CDS |
| CTGGCGTCAGCTCAGGCTGC+TGG | 0.280344 | 1.2:-5701030 | None:intergenic |
| GGGATTTGTTGTAGGGAAAA+AGG | 0.280844 | 1.2:-5698881 | None:intergenic |
| CCGGTTCTTCTTTGCTTTGT+TGG | 0.290328 | 1.2:-5699590 | None:intergenic |
| TATGGCACCATACCTCCTTA+TGG | 0.295998 | 1.2:+5698758 | MS.gene27788:CDS |
| TGCTGAATTGGTTAAGTATT+GGG | 0.296855 | 1.2:+5699543 | MS.gene27788:CDS |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 1.2:+5699221 | MS.gene27788:CDS |
| TTGCTCTTTCCATCAGGTTT+CGG | 0.314043 | 1.2:-5698512 | None:intergenic |
| CTCTTCGTCGATTCATCTTA+AGG | 0.337179 | 1.2:+5699062 | MS.gene27788:CDS |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 1.2:+5699383 | MS.gene27788:intron |
| CTTGCCGAGGCTATTTCTAA+TGG | 0.350981 | 1.2:+5700845 | MS.gene27788:CDS |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 1.2:+5698740 | MS.gene27788:CDS |
| TCCTCCTCATCTACCGGATA+AGG | 0.372127 | 1.2:-5701241 | None:intergenic |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 1.2:+5698650 | MS.gene27788:CDS |
| GGATTTGTTGTTGTTGGGGA+AGG | 0.379887 | 1.2:-5698841 | None:intergenic |
| CGCATCTCTGGCGTCAGCTC+AGG | 0.380128 | 1.2:-5701037 | None:intergenic |
| TTGCCCTTGCTCTTTCCATC+AGG | 0.384668 | 1.2:-5698518 | None:intergenic |
| ATGATTGAGGGTTAGTCTTA+GGG | 0.390145 | 1.2:-5700993 | None:intergenic |
| AGAGAATCTCTCGGATAATC+CGG | 0.395614 | 1.2:-5699043 | None:intergenic |
| ATTTGTTGTTGTTGGGGAAG+GGG | 0.399109 | 1.2:-5698839 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 1.2:-5699486 | None:intergenic |
| TTGCTGAATTGGTTAAGTAT+TGG | 0.403286 | 1.2:+5699542 | MS.gene27788:CDS |
| AGGAGCAGCTGGCACAGTTT+AGG | 0.406187 | 1.2:+5701158 | MS.gene27788:CDS |
| CCAACAAAGCAAAGAAGAAC+CGG | 0.408497 | 1.2:+5699590 | MS.gene27788:CDS |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 1.2:+5698640 | MS.gene27788:CDS |
| GTTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 1.2:-5698835 | None:intergenic |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 1.2:+5699603 | MS.gene27788:CDS |
| GCTATACGGTCTTGGTAACT+TGG | 0.413255 | 1.2:+5700937 | MS.gene27788:CDS |
| GATTGCTTCAGCAGCCGGTT+TGG | 0.416531 | 1.2:-5699185 | None:intergenic |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.418549 | 1.2:-5698944 | None:intergenic |
| TGAATATGGTGGTAAATGAT+AGG | 0.419203 | 1.2:-5698798 | None:intergenic |
| GTTGTTGTTGGGGTTGTGGT+GGG | 0.422252 | 1.2:-5698943 | None:intergenic |
| TGAATAAGCTCCCGCATCTC+TGG | 0.423368 | 1.2:-5701049 | None:intergenic |
| ATGGCACCATACCTCCTTAT+GGG | 0.425132 | 1.2:+5698759 | MS.gene27788:CDS |
| GTTGTGGAGGGATTTGTTGT+AGG | 0.427635 | 1.2:-5698889 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 1.2:+5699384 | MS.gene27788:intron |
| TTGCCGAGGCTATTTCTAAT+GGG | 0.436783 | 1.2:+5700846 | MS.gene27788:CDS |
| TGAGCTGACGCCAGAGATGC+GGG | 0.441007 | 1.2:+5701039 | MS.gene27788:CDS |
| CCTCCTCATCTACCGGATAA+GGG | 0.441831 | 1.2:-5701240 | None:intergenic |
| TCGTGAAGCTCGTTAATAAA+CGG | 0.445154 | 1.2:-5699794 | None:intergenic |
| TGGCGTCAGCTCAGGCTGCT+GGG | 0.447507 | 1.2:-5701029 | None:intergenic |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 1.2:-5698970 | None:intergenic |
| AAGAAGAAGGGAAAGCTATA+CGG | 0.450481 | 1.2:+5700923 | MS.gene27788:CDS |
| TTAACCAATTCAGCAAAGAT+AGG | 0.450597 | 1.2:-5699535 | None:intergenic |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 1.2:-5698740 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 1.2:-5699190 | None:intergenic |
| TTAATTGCTCTTGCGTCAAA+CGG | 0.464925 | 1.2:-5701072 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 1.2:-5698658 | None:intergenic |
| AGGACCCTTCACCATGATTG+AGG | 0.467659 | 1.2:-5701006 | None:intergenic |
| GATTTGTTGTTGTTGGGGAA+GGG | 0.469554 | 1.2:-5698840 | None:intergenic |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 1.2:-5699392 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 1.2:+5699480 | MS.gene27788:CDS |
| ACCGGATAAGGGTCAACATT+GGG | 0.473537 | 1.2:-5701229 | None:intergenic |
| CAGGAGTAGCTACACTAGCT+TGG | 0.474445 | 1.2:-5698679 | None:intergenic |
| TTGTGGAGGGATTTGTTGTA+GGG | 0.475008 | 1.2:-5698888 | None:intergenic |
| CTCTTTCCATCAGGTTTCGG+AGG | 0.478074 | 1.2:-5698509 | None:intergenic |
| AAGGGAAAGCTATACGGTCT+TGG | 0.480141 | 1.2:+5700929 | MS.gene27788:CDS |
| TGTTGTTGTTGGGGAACATG+TGG | 0.482231 | 1.2:-5698917 | None:intergenic |
| GTTGTTGTTGGGGAACATGT+GGG | 0.484069 | 1.2:-5698916 | None:intergenic |
| GCTCCTCATATGACCTTTGA+CGG | 0.484551 | 1.2:-5701141 | None:intergenic |
| GGAGGGATTTGTTGTTGTTG+GGG | 0.486144 | 1.2:-5698845 | None:intergenic |
| TAGCACGCTCGTCGCAGTAT+TGG | 0.486252 | 1.2:-5699841 | None:intergenic |
| TTGATGCAACACTACCCTTC+CGG | 0.489648 | 1.2:-5700970 | None:intergenic |
| CGGAGAGCACGCTGAGCGTA+TGG | 0.490492 | 1.2:+5699660 | MS.gene27788:CDS |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.490661 | 1.2:+5699000 | MS.gene27788:CDS |
| TCCCAATGTTGACCCTTATC+CGG | 0.490951 | 1.2:+5701228 | MS.gene27788:CDS |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 1.2:+5698550 | MS.gene27788:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 1.2:+5699561 | MS.gene27788:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 1.2:+5699604 | MS.gene27788:CDS |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 1.2:+5698525 | MS.gene27788:CDS |
| GCAGTAGAAATGACAGGCAT+CGG | 0.507512 | 1.2:-5698599 | None:intergenic |
| ATTCTTTGACCTTCAACACT+TGG | 0.510375 | 1.2:+5700882 | MS.gene27788:CDS |
| AAGATTTGCTTAACCGTCAA+AGG | 0.511841 | 1.2:+5701128 | MS.gene27788:CDS |
| TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 1.2:-5698698 | None:intergenic |
| AATACTGCGACGAGCGTGCT+AGG | 0.515851 | 1.2:+5699843 | MS.gene27788:CDS |
| AGGAGTAGCTACACTAGCTT+GGG | 0.517647 | 1.2:-5698678 | None:intergenic |
| GGCACAGTTTAGGCAAGCCC+AGG | 0.523133 | 1.2:+5701168 | MS.gene27788:CDS |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 1.2:-5699212 | None:intergenic |
| GCTTCAGCAGCCGGTTTGGA+AGG | 0.524446 | 1.2:-5699181 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 1.2:+5699503 | MS.gene27788:CDS |
| GTGGGAGGGACCTTGAGCCT+GGG | 0.524940 | 1.2:-5701185 | None:intergenic |
| TATGGTGGTAAATGATAGGT+CGG | 0.525246 | 1.2:-5698794 | None:intergenic |
| GGAGGAAGGAAGGTCCCATA+AGG | 0.527593 | 1.2:-5698773 | None:intergenic |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 1.2:+5699508 | MS.gene27788:CDS |
| GGACCCTTCACCATGATTGA+GGG | 0.531656 | 1.2:-5701005 | None:intergenic |
| TCATCATCCTCCTCATCTAC+CGG | 0.536805 | 1.2:-5701247 | None:intergenic |
| CAGTAGAAATGACAGGCATC+GGG | 0.537420 | 1.2:-5698598 | None:intergenic |
| CCAATTCAGCAAAGATAGGC+GGG | 0.537787 | 1.2:-5699531 | None:intergenic |
| TAACCGTCAAAGGTCATATG+AGG | 0.541572 | 1.2:+5701138 | MS.gene27788:CDS |
| GAAGGTCCCATAAGGAGGTA+TGG | 0.543026 | 1.2:-5698765 | None:intergenic |
| TTAAAAGCGGCGCACTAGTG+TGG | 0.545514 | 1.2:-5701204 | None:intergenic |
| AAGGTCATATGAGGAGCAGC+TGG | 0.546890 | 1.2:+5701147 | MS.gene27788:CDS |
| TAAAAGCGGCGCACTAGTGT+GGG | 0.551339 | 1.2:-5701203 | None:intergenic |
| CTGAGCTGACGCCAGAGATG+CGG | 0.553348 | 1.2:+5701038 | MS.gene27788:CDS |
| CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 1.2:+5698986 | MS.gene27788:CDS |
| AAATAGCCTCGGCAAGCTGC+CGG | 0.555959 | 1.2:-5700838 | None:intergenic |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 1.2:+5698731 | MS.gene27788:CDS |
| CGAGCGTGCTAGGAGTGTGC+AGG | 0.557294 | 1.2:+5699853 | MS.gene27788:CDS |
| AGTTGCTGGAGACAAGAAGA+AGG | 0.557374 | 1.2:+5700910 | MS.gene27788:CDS |
| ATAGGCTAGGAGGTTACGTC+GGG | 0.559517 | 1.2:+5699769 | MS.gene27788:intron |
| TTTAGGCAAGCCCAGGCTCA+AGG | 0.561956 | 1.2:+5701175 | MS.gene27788:CDS |
| CTAAGACTAACCCTCAATCA+TGG | 0.562434 | 1.2:+5700995 | MS.gene27788:CDS |
| GGTATGGTGCCATAATATCC+AGG | 0.563962 | 1.2:-5698749 | None:intergenic |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 1.2:+5698531 | MS.gene27788:CDS |
| GTAACTTGGCTGCTAACTAC+CGG | 0.570124 | 1.2:+5700951 | MS.gene27788:CDS |
| ACGCTCGTCGCAGTATTGGC+CGG | 0.570260 | 1.2:-5699837 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 1.2:-5699485 | None:intergenic |
| GAGAATCTCTCGGATAATCC+GGG | 0.572109 | 1.2:-5699042 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 1.2:+5698992 | MS.gene27788:CDS |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 1.2:+5698641 | MS.gene27788:CDS |
| TACCGGATAAGGGTCAACAT+TGG | 0.575351 | 1.2:-5701230 | None:intergenic |
| ATGATAGGTCGGAGGAAGGA+AGG | 0.575427 | 1.2:-5698783 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 1.2:+5699552 | MS.gene27788:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 1.2:+5698565 | MS.gene27788:CDS |
| GAAACCTGATGGAAAGAGCA+AGG | 0.580800 | 1.2:+5698514 | MS.gene27788:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 1.2:+5699597 | MS.gene27788:CDS |
| CCCTTATCCGGTAGATGAGG+AGG | 0.583535 | 1.2:+5701240 | MS.gene27788:CDS |
| GAAATGCCTCCGAAACCTGA+TGG | 0.584259 | 1.2:+5698503 | None:intergenic |
| TTGAACAGGAGGAGTATGAC+CGG | 0.586858 | 1.2:+5700819 | MS.gene27788:intron |
| GTAAATGATAGGTCGGAGGA+AGG | 0.587191 | 1.2:-5698787 | None:intergenic |
| CTAACCCTCAATCATGGTGA+AGG | 0.587704 | 1.2:+5701001 | MS.gene27788:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 1.2:-5699085 | None:intergenic |
| GGATGATGAGGATCATGATG+AGG | 0.590861 | 1.2:+5701261 | MS.gene27788:CDS |
| GGGCACATGTAAGTTGGATG+AGG | 0.590959 | 1.2:-5698716 | None:intergenic |
| GTAGATGCAGTAGAAATGAC+AGG | 0.591240 | 1.2:-5698605 | None:intergenic |
| AGAGCAATTAACGCAACAGA+TGG | 0.592019 | 1.2:+5701084 | MS.gene27788:CDS |
| ACTGGAGGGCACATGTAAGT+TGG | 0.592175 | 1.2:-5698722 | None:intergenic |
| CTTGTGACAAATAGGCTAGG+AGG | 0.600406 | 1.2:+5699759 | MS.gene27788:intron |
| AAGCGGCGCACTAGTGTGGG+AGG | 0.600468 | 1.2:-5701200 | None:intergenic |
| GTATGACCGGCAGCTTGCCG+AGG | 0.601524 | 1.2:+5700832 | MS.gene27788:CDS |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 1.2:+5699070 | MS.gene27788:CDS |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 1.2:+5698985 | MS.gene27788:CDS |
| AATCGACGAAGAGAATCTCT+CGG | 0.614449 | 1.2:-5699052 | None:intergenic |
| CAACAAAGCAAAGAAGAACC+GGG | 0.614725 | 1.2:+5699591 | MS.gene27788:CDS |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 1.2:+5699473 | MS.gene27788:CDS |
| ACCAATTCAGCAAAGATAGG+CGG | 0.617550 | 1.2:-5699532 | None:intergenic |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 1.2:-5698737 | None:intergenic |
| CTTGGCTGCTAACTACCGGA+AGG | 0.625442 | 1.2:+5700955 | MS.gene27788:CDS |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 1.2:+5698651 | MS.gene27788:CDS |
| AGTAGCTACACTAGCTTGGG+AGG | 0.627476 | 1.2:-5698675 | None:intergenic |
| GTTGCTGGAGACAAGAAGAA+GGG | 0.632114 | 1.2:+5700911 | MS.gene27788:CDS |
| TGACCCTTATCCGGTAGATG+AGG | 0.632870 | 1.2:+5701237 | MS.gene27788:CDS |
| AATAGGCTAGGAGGTTACGT+CGG | 0.632889 | 1.2:+5699768 | MS.gene27788:intron |
| GGAAGGAAGGTCCCATAAGG+AGG | 0.636273 | 1.2:-5698770 | None:intergenic |
| TAGTGTAGCTACTCCTGCGA+CGG | 0.637488 | 1.2:+5698685 | MS.gene27788:CDS |
| TAACCCTCAATCATGGTGAA+GGG | 0.637969 | 1.2:+5701002 | MS.gene27788:CDS |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 1.2:-5698809 | None:intergenic |
| GGTAGATGAGGAGGATGATG+AGG | 0.638477 | 1.2:+5701249 | MS.gene27788:CDS |
| AAACCTGATGGAAAGAGCAA+GGG | 0.640222 | 1.2:+5698515 | MS.gene27788:CDS |
| AGACCCATTAGAAATAGCCT+CGG | 0.644902 | 1.2:-5700849 | None:intergenic |
| GGTGGTAAATGATAGGTCGG+AGG | 0.646104 | 1.2:-5698791 | None:intergenic |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.650281 | 1.2:+5699640 | MS.gene27788:CDS |
| CGTCAGCTCAGGCTGCTGGG+AGG | 0.651312 | 1.2:-5701026 | None:intergenic |
| TCAACATTGGGACTTAAAAG+CGG | 0.653227 | 1.2:-5701217 | None:intergenic |
| AGCGGCGCACTAGTGTGGGA+GGG | 0.654626 | 1.2:-5701199 | None:intergenic |
| TTGGCTGCTAACTACCGGAA+GGG | 0.659168 | 1.2:+5700956 | MS.gene27788:CDS |
| GGAGGATGCATTCACACTGG+TGG | 0.660778 | 1.2:+5699625 | MS.gene27788:CDS |
| GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 1.2:+5698989 | MS.gene27788:CDS |
| GCAACAGATGGCAAGTCAAG+CGG | 0.662263 | 1.2:+5701096 | MS.gene27788:CDS |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.663571 | 1.2:+5699607 | MS.gene27788:CDS |
| ACACTAGCTTGGGAGGACCC+AGG | 0.664522 | 1.2:-5698668 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.669400 | 1.2:+5698976 | MS.gene27788:CDS |
| TTGGAAGACATATAGTGATG+TGG | 0.671013 | 1.2:+5699240 | MS.gene27788:CDS |
| AAGGGAGGATGCATTCACAC+TGG | 0.674246 | 1.2:+5699622 | MS.gene27788:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 1.2:-5698736 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 1.2:-5699517 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 1.2:+5699494 | MS.gene27788:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATAATAAACAAAATA+AGG | - | chr1.2:5700712-5700731 | None:intergenic | 10.0% |
| !! | ACAATCTAAATTAAATGATA+TGG | - | chr1.2:5699714-5699733 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTAATTCGAATTG+TGG | + | chr1.2:5699969-5699988 | MS.gene27788:intron | 15.0% |
| !!! | TATTTTGTTATTATTTGAAC+AGG | + | chr1.2:5700805-5700824 | MS.gene27788:intron | 15.0% |
| !! | AATTCGAATTAAAAAAGTTG+GGG | - | chr1.2:5700000-5700019 | None:intergenic | 20.0% |
| !! | ACAATTCGAATTAAAAAAGT+TGG | - | chr1.2:5700002-5700021 | None:intergenic | 20.0% |
| !! | ATAAATTCATAAGCAATAAC+AGG | - | chr1.2:5700111-5700130 | None:intergenic | 20.0% |
| !! | CAATTCGAATTAAAAAAGTT+GGG | - | chr1.2:5700001-5700020 | None:intergenic | 20.0% |
| !! | TAAATTCATAAGCAATAACA+GGG | - | chr1.2:5700110-5700129 | None:intergenic | 20.0% |
| !! | TATAAAGATTAAGAACACAT+TGG | - | chr1.2:5700539-5700558 | None:intergenic | 20.0% |
| !!! | AAGCCTTATAATATCTATTT+AGG | - | chr1.2:5700239-5700258 | None:intergenic | 20.0% |
| !!! | TTTTATTTCTTGTGACAAAT+AGG | + | chr1.2:5699751-5699770 | MS.gene27788:intron | 20.0% |
| ! | AAAATATTTAAGGACAGAAC+TGG | - | chr1.2:5700791-5700810 | None:intergenic | 25.0% |
| ! | AAGGAAACTAATCATAAGAA+TGG | - | chr1.2:5700693-5700712 | None:intergenic | 25.0% |
| ! | GAAAACTATATAGAATCAAG+TGG | - | chr1.2:5700450-5700469 | None:intergenic | 25.0% |
| ! | TGGCCTAAATAGATATTATA+AGG | + | chr1.2:5700233-5700252 | MS.gene27788:intron | 25.0% |
| ! | TTTATGTTATAGATGTCTTG+CGG | + | chr1.2:5700126-5700145 | MS.gene27788:intron | 25.0% |
| !! | TAGAATTTAGAACTTATCAC+AGG | + | chr1.2:5700504-5700523 | MS.gene27788:intron | 25.0% |
| !!! | TTTGTTATTATTTGAACAGG+AGG | + | chr1.2:5700808-5700827 | MS.gene27788:intron | 25.0% |
| AAAACGCACAAAAATAAGTC+CGG | + | chr1.2:5699818-5699837 | MS.gene27788:CDS | 30.0% | |
| AAAACTGAGTACTAAGGTAA+GGG | - | chr1.2:5700268-5700287 | None:intergenic | 30.0% | |
| AAAGTCGATTAAAATTACCG+CGG | - | chr1.2:5700066-5700085 | None:intergenic | 30.0% | |
| AATAACAGAGAAACAGTGTA+AGG | - | chr1.2:5700761-5700780 | None:intergenic | 30.0% | |
| ATGATAGCAGTTATGAATGA+TGG | - | chr1.2:5699215-5699234 | None:intergenic | 30.0% | |
| TGAATATGGTGGTAAATGAT+AGG | - | chr1.2:5698801-5698820 | None:intergenic | 30.0% | |
| TGCTGAATTGGTTAAGTATT+GGG | + | chr1.2:5699543-5699562 | MS.gene27788:CDS | 30.0% | |
| TTAACCAATTCAGCAAAGAT+AGG | - | chr1.2:5699538-5699557 | None:intergenic | 30.0% | |
| TTGCTGAATTGGTTAAGTAT+TGG | + | chr1.2:5699542-5699561 | MS.gene27788:CDS | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr1.2:5699221-5699240 | MS.gene27788:CDS | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr1.2:5699024-5699043 | MS.gene27788:CDS | 30.0% |
| ! | TTTTCTTGCAATCACATAAC+AGG | - | chr1.2:5700627-5700646 | None:intergenic | 30.0% |
| !! | TTTTAATTCGAATTGTGGTC+TGG | + | chr1.2:5699974-5699993 | MS.gene27788:intron | 30.0% |
| !!! | AACTTTTTTCCAAGTGTTGA+AGG | - | chr1.2:5700894-5700913 | None:intergenic | 30.0% |
| AACACTTGGAAAAAAGTTGC+TGG | + | chr1.2:5700896-5700915 | MS.gene27788:CDS | 35.0% | |
| AAGAAGAAGGGAAAGCTATA+CGG | + | chr1.2:5700923-5700942 | MS.gene27788:CDS | 35.0% | |
| AAGATTAAGAACACATTGGC+TGG | - | chr1.2:5700535-5700554 | None:intergenic | 35.0% | |
| AATGACAAACAAGACAGAAC+TGG | - | chr1.2:5699943-5699962 | None:intergenic | 35.0% | |
| ATTCTTTGACCTTCAACACT+TGG | + | chr1.2:5700882-5700901 | MS.gene27788:CDS | 35.0% | |
| CAAAACTGAGTACTAAGGTA+AGG | - | chr1.2:5700269-5700288 | None:intergenic | 35.0% | |
| GGCAAGTTGTAATTGCTTAT+AGG | - | chr1.2:5700601-5700620 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGGT+CGG | - | chr1.2:5698797-5698816 | None:intergenic | 35.0% | |
| TCAACATTGGGACTTAAAAG+CGG | - | chr1.2:5701220-5701239 | None:intergenic | 35.0% | |
| TCGTGAAGCTCGTTAATAAA+CGG | - | chr1.2:5699797-5699816 | None:intergenic | 35.0% | |
| TTAATTGCTCTTGCGTCAAA+CGG | - | chr1.2:5701075-5701094 | None:intergenic | 35.0% | |
| TTGCAATCACATAACAGGTT+TGG | - | chr1.2:5700622-5700641 | None:intergenic | 35.0% | |
| TTGGAAGACATATAGTGATG+TGG | + | chr1.2:5699240-5699259 | MS.gene27788:CDS | 35.0% | |
| TTTCTTGTGACAAATAGGCT+AGG | + | chr1.2:5699756-5699775 | MS.gene27788:intron | 35.0% | |
| ! | AAGATTTGCTTAACCGTCAA+AGG | + | chr1.2:5701128-5701147 | MS.gene27788:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr1.2:5699263-5699282 | MS.gene27788:CDS | 35.0% |
| ! | TACCTTAGTACTCAGTTTTG+TGG | + | chr1.2:5700269-5700288 | MS.gene27788:intron | 35.0% |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr1.2:5698984-5699003 | None:intergenic | 35.0% |
| ! | TTTGTTGTAGGGAAAAAGGT+GGG | - | chr1.2:5698880-5698899 | None:intergenic | 35.0% |
| !! | ACCTTAGTACTCAGTTTTGT+GGG | + | chr1.2:5700270-5700289 | MS.gene27788:intron | 35.0% |
| !! | ATGATTGAGGGTTAGTCTTA+GGG | - | chr1.2:5700996-5701015 | None:intergenic | 35.0% |
| !! | ATTTGTTGTAGGGAAAAAGG+TGG | - | chr1.2:5698881-5698900 | None:intergenic | 35.0% |
| !! | CGACTTTGTTGATTCTTACA+AGG | + | chr1.2:5700079-5700098 | MS.gene27788:intron | 35.0% |
| !! | GTTCTGTCTTGTTTGTCATT+TGG | + | chr1.2:5699943-5699962 | MS.gene27788:intron | 35.0% |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr1.2:5699915-5699934 | MS.gene27788:intron | 35.0% |
| AAACCTGATGGAAAGAGCAA+GGG | + | chr1.2:5698515-5698534 | MS.gene27788:CDS | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | - | chr1.2:5698739-5698758 | None:intergenic | 40.0% | |
| AATCGACGAAGAGAATCTCT+CGG | - | chr1.2:5699055-5699074 | None:intergenic | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr1.2:5699384-5699403 | MS.gene27788:intron | 40.0% | |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr1.2:5698985-5699004 | MS.gene27788:CDS | 40.0% | |
| ACCAATTCAGCAAAGATAGG+CGG | - | chr1.2:5699535-5699554 | None:intergenic | 40.0% | |
| AGACCCATTAGAAATAGCCT+CGG | - | chr1.2:5700852-5700871 | None:intergenic | 40.0% | |
| AGAGAATCTCTCGGATAATC+CGG | - | chr1.2:5699046-5699065 | None:intergenic | 40.0% | |
| AGAGCAATTAACGCAACAGA+TGG | + | chr1.2:5701084-5701103 | MS.gene27788:CDS | 40.0% | |
| ATCATACTGCAGAATGCACA+TGG | - | chr1.2:5700403-5700422 | None:intergenic | 40.0% | |
| ATTTAAGGACAGAACTGGCA+AGG | - | chr1.2:5700786-5700805 | None:intergenic | 40.0% | |
| CAACAAAGCAAAGAAGAACC+GGG | + | chr1.2:5699591-5699610 | MS.gene27788:CDS | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | + | chr1.2:5698986-5699005 | MS.gene27788:CDS | 40.0% | |
| CCAACAAAGCAAAGAAGAAC+CGG | + | chr1.2:5699590-5699609 | MS.gene27788:CDS | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | + | chr1.2:5698740-5698759 | MS.gene27788:CDS | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | - | chr1.2:5698743-5698762 | None:intergenic | 40.0% | |
| CTAAGACTAACCCTCAATCA+TGG | + | chr1.2:5700995-5701014 | MS.gene27788:CDS | 40.0% | |
| GAAGGTGATGAATGATACAG+AGG | - | chr1.2:5700165-5700184 | None:intergenic | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | + | chr1.2:5698550-5698569 | MS.gene27788:CDS | 40.0% | |
| GTAGATGCAGTAGAAATGAC+AGG | - | chr1.2:5698608-5698627 | None:intergenic | 40.0% | |
| TAACCCTCAATCATGGTGAA+GGG | + | chr1.2:5701002-5701021 | MS.gene27788:CDS | 40.0% | |
| TAACCGTCAAAGGTCATATG+AGG | + | chr1.2:5701138-5701157 | MS.gene27788:CDS | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | - | chr1.2:5698740-5698759 | None:intergenic | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr1.2:5699383-5699402 | MS.gene27788:intron | 40.0% | |
| TCCCACAAAACTGAGTACTA+AGG | - | chr1.2:5700274-5700293 | None:intergenic | 40.0% | |
| TCTATTTAGGCCATGTCTCT+AGG | - | chr1.2:5700226-5700245 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr1.2:5699088-5699107 | None:intergenic | 40.0% | |
| TGTCTCTAGGCAATGAAGAA+CGG | - | chr1.2:5700213-5700232 | None:intergenic | 40.0% | |
| TTAAAATTACCGCGGACAGA+TGG | - | chr1.2:5700058-5700077 | None:intergenic | 40.0% | |
| TTCTTCATTGCCTAGAGACA+TGG | + | chr1.2:5700213-5700232 | MS.gene27788:intron | 40.0% | |
| TTGCTCTTTCCATCAGGTTT+CGG | - | chr1.2:5698515-5698534 | None:intergenic | 40.0% | |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr1.2:5698985-5699004 | None:intergenic | 40.0% |
| ! | CTTGTCGTATCTCTCAGTTT+TGG | + | chr1.2:5699880-5699899 | MS.gene27788:intron | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | - | chr1.2:5698983-5699002 | None:intergenic | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr1.2:5699269-5699288 | MS.gene27788:CDS | 40.0% |
| !! | ATTTGTTGTTGTTGGGGAAG+GGG | - | chr1.2:5698842-5698861 | None:intergenic | 40.0% |
| !! | CATGATTGAGGGTTAGTCTT+AGG | - | chr1.2:5700997-5701016 | None:intergenic | 40.0% |
| !! | CTCTTCGTCGATTCATCTTA+AGG | + | chr1.2:5699062-5699081 | MS.gene27788:CDS | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+GGG | - | chr1.2:5698843-5698862 | None:intergenic | 40.0% |
| !! | GGGATTTGTTGTAGGGAAAA+AGG | - | chr1.2:5698884-5698903 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr1.2:5698849-5698868 | None:intergenic | 40.0% |
| !! | TTGCCGAGGCTATTTCTAAT+GGG | + | chr1.2:5700846-5700865 | MS.gene27788:CDS | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTA+GGG | - | chr1.2:5698891-5698910 | None:intergenic | 40.0% |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr1.2:5698815-5698834 | None:intergenic | 40.0% |
| !!! | GAAAAAGGTGGGTTTTGTTG+TGG | - | chr1.2:5698869-5698888 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr1.2:5698930-5698949 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr1.2:5698950-5698969 | None:intergenic | 40.0% |
| AAGGGAAAGCTATACGGTCT+TGG | + | chr1.2:5700929-5700948 | MS.gene27788:CDS | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr1.2:5699768-5699787 | MS.gene27788:intron | 45.0% | |
| ACAGCCCCAACAAGAAAATG+TGG | + | chr1.2:5698976-5698995 | MS.gene27788:CDS | 45.0% | |
| ACCGGATAAGGGTCAACATT+GGG | - | chr1.2:5701232-5701251 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr1.2:5699640-5699659 | MS.gene27788:CDS | 45.0% | |
| AGTTGCTGGAGACAAGAAGA+AGG | + | chr1.2:5700910-5700929 | MS.gene27788:CDS | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | + | chr1.2:5698759-5698778 | MS.gene27788:CDS | 45.0% | |
| CAGTAGAAATGACAGGCATC+GGG | - | chr1.2:5698601-5698620 | None:intergenic | 45.0% | |
| CCAATTCAGCAAAGATAGGC+GGG | - | chr1.2:5699534-5699553 | None:intergenic | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+TGG | - | chr1.2:5699593-5699612 | None:intergenic | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr1.2:5699070-5699089 | MS.gene27788:CDS | 45.0% | |
| CTAACCCTCAATCATGGTGA+AGG | + | chr1.2:5701001-5701020 | MS.gene27788:CDS | 45.0% | |
| CTTGTGACAAATAGGCTAGG+AGG | + | chr1.2:5699759-5699778 | MS.gene27788:intron | 45.0% | |
| GAAACCTGATGGAAAGAGCA+AGG | + | chr1.2:5698514-5698533 | MS.gene27788:CDS | 45.0% | |
| GAGAATCTCTCGGATAATCC+GGG | - | chr1.2:5699045-5699064 | None:intergenic | 45.0% | |
| GCAGTAGAAATGACAGGCAT+CGG | - | chr1.2:5698602-5698621 | None:intergenic | 45.0% | |
| GCTCCTCATATGACCTTTGA+CGG | - | chr1.2:5701144-5701163 | None:intergenic | 45.0% | |
| GGATGATGAGGATCATGATG+AGG | + | chr1.2:5701261-5701280 | MS.gene27788:CDS | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr1.2:5699494-5699513 | MS.gene27788:CDS | 45.0% | |
| GTAAATGATAGGTCGGAGGA+AGG | - | chr1.2:5698790-5698809 | None:intergenic | 45.0% | |
| GTAACTTGGCTGCTAACTAC+CGG | + | chr1.2:5700951-5700970 | MS.gene27788:CDS | 45.0% | |
| GTTGCTGGAGACAAGAAGAA+GGG | + | chr1.2:5700911-5700930 | MS.gene27788:CDS | 45.0% | |
| TACCGGATAAGGGTCAACAT+TGG | - | chr1.2:5701233-5701252 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr1.2:5699473-5699492 | MS.gene27788:CDS | 45.0% | |
| TAGATGTCTTGCGGCAACTT+TGG | + | chr1.2:5700135-5700154 | MS.gene27788:intron | 45.0% | |
| TATGGCACCATACCTCCTTA+TGG | + | chr1.2:5698758-5698777 | MS.gene27788:CDS | 45.0% | |
| TCATCATCCTCCTCATCTAC+CGG | - | chr1.2:5701250-5701269 | None:intergenic | 45.0% | |
| TCCCAATGTTGACCCTTATC+CGG | + | chr1.2:5701228-5701247 | MS.gene27788:CDS | 45.0% | |
| TTGATGCAACACTACCCTTC+CGG | - | chr1.2:5700973-5700992 | None:intergenic | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr1.2:5699489-5699508 | None:intergenic | 45.0% | |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | - | chr1.2:5698977-5698996 | None:intergenic | 45.0% |
| ! | AGGAGTAGCTACACTAGCTT+GGG | - | chr1.2:5698681-5698700 | None:intergenic | 45.0% |
| ! | CAGCTTTTTGCCTTCCAAAC+CGG | + | chr1.2:5699171-5699190 | MS.gene27788:intron | 45.0% |
| ! | GCTATACGGTCTTGGTAACT+TGG | + | chr1.2:5700937-5700956 | MS.gene27788:CDS | 45.0% |
| ! | GTTGTTGTTGGGGAACATGT+GGG | - | chr1.2:5698919-5698938 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGGGAACATG+TGG | - | chr1.2:5698920-5698939 | None:intergenic | 45.0% |
| ! | TTGAACAGGAGGAGTATGAC+CGG | + | chr1.2:5700819-5700838 | MS.gene27788:intron | 45.0% |
| !! | CTTGCCGAGGCTATTTCTAA+TGG | + | chr1.2:5700845-5700864 | MS.gene27788:CDS | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr1.2:5698848-5698867 | None:intergenic | 45.0% |
| !! | GGATTTGTTGTTGTTGGGGA+AGG | - | chr1.2:5698844-5698863 | None:intergenic | 45.0% |
| !! | GGTATGGTGCCATAATATCC+AGG | - | chr1.2:5698752-5698771 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr1.2:5698850-5698869 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+AGG | - | chr1.2:5698853-5698872 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | - | chr1.2:5698866-5698885 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | - | chr1.2:5698865-5698884 | None:intergenic | 45.0% |
| !!! | ACATGTGGGTTTTGTTGTGG+AGG | - | chr1.2:5698905-5698924 | None:intergenic | 45.0% |
| !!! | CATGTGGGTTTTGTTGTGGA+GGG | - | chr1.2:5698904-5698923 | None:intergenic | 45.0% |
| !!! | GGAACATGTGGGTTTTGTTG+TGG | - | chr1.2:5698908-5698927 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr1.2:5698929-5698948 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr1.2:5698931-5698950 | None:intergenic | 45.0% |
| !! | AAATAATAACAAAATATTTA+AGG | - | chr1.2:5700801-5700820 | None:intergenic | 5.0% |
| AAGGGAGGATGCATTCACAC+TGG | + | chr1.2:5699622-5699641 | MS.gene27788:CDS | 50.0% | |
| AAGGTCATATGAGGAGCAGC+TGG | + | chr1.2:5701147-5701166 | MS.gene27788:CDS | 50.0% | |
| AATTACCGCGGACAGATGGT+TGG | - | chr1.2:5700054-5700073 | None:intergenic | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | + | chr1.2:5699508-5699527 | MS.gene27788:CDS | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | + | chr1.2:5699503-5699522 | MS.gene27788:CDS | 50.0% | |
| AGGACCCTTCACCATGATTG+AGG | - | chr1.2:5701009-5701028 | None:intergenic | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr1.2:5699769-5699788 | MS.gene27788:intron | 50.0% | |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr1.2:5698640-5698659 | MS.gene27788:CDS | 50.0% | |
| ATGATAGGTCGGAGGAAGGA+AGG | - | chr1.2:5698786-5698805 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | - | chr1.2:5699395-5699414 | None:intergenic | 50.0% | |
| CAGGAGTAGCTACACTAGCT+TGG | - | chr1.2:5698682-5698701 | None:intergenic | 50.0% | |
| CCCGCCTATCTTTGCTGAAT+TGG | + | chr1.2:5699531-5699550 | MS.gene27788:CDS | 50.0% | |
| CCTCCTCATCTACCGGATAA+GGG | - | chr1.2:5701243-5701262 | None:intergenic | 50.0% | |
| CCTTCATCATGACACGTGAG+CGG | + | chr1.2:5700180-5700199 | MS.gene27788:intron | 50.0% | |
| CTCTTTCCATCAGGTTTCGG+AGG | - | chr1.2:5698512-5698531 | None:intergenic | 50.0% | |
| GAAAATGTGGTCGAAGAGGG+TGG | + | chr1.2:5698989-5699008 | MS.gene27788:CDS | 50.0% | |
| GAAGGTCCCATAAGGAGGTA+TGG | - | chr1.2:5698768-5698787 | None:intergenic | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr1.2:5699193-5699212 | None:intergenic | 50.0% | |
| GCAACAGATGGCAAGTCAAG+CGG | + | chr1.2:5701096-5701115 | MS.gene27788:CDS | 50.0% | |
| GGACCCTTCACCATGATTGA+GGG | - | chr1.2:5701008-5701027 | None:intergenic | 50.0% | |
| GGTAGATGAGGAGGATGATG+AGG | + | chr1.2:5701249-5701268 | MS.gene27788:CDS | 50.0% | |
| GGTGGTAAATGATAGGTCGG+AGG | - | chr1.2:5698794-5698813 | None:intergenic | 50.0% | |
| TAAAAGCGGCGCACTAGTGT+GGG | - | chr1.2:5701206-5701225 | None:intergenic | 50.0% | |
| TAGTGTAGCTACTCCTGCGA+CGG | + | chr1.2:5698685-5698704 | MS.gene27788:CDS | 50.0% | |
| TCCTCCTCATCTACCGGATA+AGG | - | chr1.2:5701244-5701263 | None:intergenic | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr1.2:5698641-5698660 | MS.gene27788:CDS | 50.0% | |
| TGAATAAGCTCCCGCATCTC+TGG | - | chr1.2:5701052-5701071 | None:intergenic | 50.0% | |
| TGACCCTTATCCGGTAGATG+AGG | + | chr1.2:5701237-5701256 | MS.gene27788:CDS | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr1.2:5699488-5699507 | None:intergenic | 50.0% | |
| TTAAAAGCGGCGCACTAGTG+TGG | - | chr1.2:5701207-5701226 | None:intergenic | 50.0% | |
| TTGCCCTTGCTCTTTCCATC+AGG | - | chr1.2:5698521-5698540 | None:intergenic | 50.0% | |
| TTGGCTGCTAACTACCGGAA+GGG | + | chr1.2:5700956-5700975 | MS.gene27788:CDS | 50.0% | |
| TTTCTTGTTGGGGCTGTGGT+GGG | - | chr1.2:5698973-5698992 | None:intergenic | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+TGG | - | chr1.2:5698725-5698744 | None:intergenic | 50.0% |
| ! | AGTAGCTACACTAGCTTGGG+AGG | - | chr1.2:5698678-5698697 | None:intergenic | 50.0% |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | + | chr1.2:5699447-5699466 | MS.gene27788:CDS | 50.0% |
| ! | GGGCACATGTAAGTTGGATG+AGG | - | chr1.2:5698719-5698738 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | - | chr1.2:5698946-5698965 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr1.2:5698812-5698831 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr1.2:5698947-5698966 | None:intergenic | 50.0% |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | - | chr1.2:5698974-5698993 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | - | chr1.2:5698826-5698845 | None:intergenic | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr1.2:5699552-5699571 | MS.gene27788:CDS | 50.0% |
| AAATAGCCTCGGCAAGCTGC+CGG | - | chr1.2:5700841-5700860 | None:intergenic | 55.0% | |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr1.2:5699480-5699499 | MS.gene27788:CDS | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr1.2:5699843-5699862 | MS.gene27788:CDS | 55.0% | |
| AATGTGGTCGAAGAGGGTGG+TGG | + | chr1.2:5698992-5699011 | MS.gene27788:CDS | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr1.2:5699597-5699616 | MS.gene27788:CDS | 55.0% | |
| AGGAGCAGCTGGCACAGTTT+AGG | + | chr1.2:5701158-5701177 | MS.gene27788:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | - | chr1.2:5699520-5699539 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr1.2:5698731-5698750 | MS.gene27788:CDS | 55.0% | |
| CCCTTATCCGGTAGATGAGG+AGG | + | chr1.2:5701240-5701259 | MS.gene27788:CDS | 55.0% | |
| CCGCTCACGTGTCATGATGA+AGG | - | chr1.2:5700183-5700202 | None:intergenic | 55.0% | |
| CTCCATGCTCAGATCAGACG+CGG | - | chr1.2:5700308-5700327 | None:intergenic | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | + | chr1.2:5698651-5698670 | MS.gene27788:CDS | 55.0% | |
| CTTGGCTGCTAACTACCGGA+AGG | + | chr1.2:5700955-5700974 | MS.gene27788:CDS | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | + | chr1.2:5698525-5698544 | MS.gene27788:CDS | 55.0% | |
| GATTGCTTCAGCAGCCGGTT+TGG | - | chr1.2:5699188-5699207 | None:intergenic | 55.0% | |
| GGAAGGAAGGTCCCATAAGG+AGG | - | chr1.2:5698773-5698792 | None:intergenic | 55.0% | |
| GGAGGAAGGAAGGTCCCATA+AGG | - | chr1.2:5698776-5698795 | None:intergenic | 55.0% | |
| GGAGGATGCATTCACACTGG+TGG | + | chr1.2:5699625-5699644 | MS.gene27788:CDS | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr1.2:5699844-5699863 | None:intergenic | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | + | chr1.2:5698650-5698669 | MS.gene27788:CDS | 55.0% | |
| TGCATCCAACCATCTGTCCG+CGG | + | chr1.2:5700046-5700065 | MS.gene27788:intron | 55.0% | |
| TTTAGGCAAGCCCAGGCTCA+AGG | + | chr1.2:5701175-5701194 | MS.gene27788:CDS | 55.0% | |
| ! | GTTGTTGTTGGGGAAGGGGA+AGG | - | chr1.2:5698838-5698857 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | - | chr1.2:5698830-5698849 | None:intergenic | 55.0% |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr1.2:5699604-5699623 | MS.gene27788:CDS | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr1.2:5699279-5699298 | MS.gene27788:CDS | 55.0% |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | - | chr1.2:5698827-5698846 | None:intergenic | 55.0% |
| AGCCGCGTCTGATCTGAGCA+TGG | + | chr1.2:5700303-5700322 | MS.gene27788:intron | 60.0% | |
| CGCGTCTGATCTGAGCATGG+AGG | + | chr1.2:5700306-5700325 | MS.gene27788:intron | 60.0% | |
| CTGAGCTGACGCCAGAGATG+CGG | + | chr1.2:5701038-5701057 | MS.gene27788:CDS | 60.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | + | chr1.2:5698531-5698550 | MS.gene27788:CDS | 60.0% | |
| GGCACAGTTTAGGCAAGCCC+AGG | + | chr1.2:5701168-5701187 | MS.gene27788:CDS | 60.0% | |
| TGAGCTGACGCCAGAGATGC+GGG | + | chr1.2:5701039-5701058 | MS.gene27788:CDS | 60.0% | |
| ! | ACACTAGCTTGGGAGGACCC+AGG | - | chr1.2:5698671-5698690 | None:intergenic | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | - | chr1.2:5699612-5699631 | None:intergenic | 60.0% |
| ! | CTTAGTGGACGCAGCGACAG+AGG | + | chr1.2:5698565-5698584 | MS.gene27788:CDS | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr1.2:5699561-5699580 | MS.gene27788:CDS | 60.0% |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | - | chr1.2:5699840-5699859 | None:intergenic | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr1.2:5699603-5699622 | MS.gene27788:CDS | 60.0% |
| !! | GCTTCAGCAGCCGGTTTGGA+AGG | - | chr1.2:5699184-5699203 | None:intergenic | 60.0% |
| AAGCGGCGCACTAGTGTGGG+AGG | - | chr1.2:5701203-5701222 | None:intergenic | 65.0% | |
| AGCGGCGCACTAGTGTGGGA+GGG | - | chr1.2:5701202-5701221 | None:intergenic | 65.0% | |
| CGCATCTCTGGCGTCAGCTC+AGG | - | chr1.2:5701040-5701059 | None:intergenic | 65.0% | |
| GTATGACCGGCAGCTTGCCG+AGG | + | chr1.2:5700832-5700851 | MS.gene27788:CDS | 65.0% | |
| GTGGGAGGGACCTTGAGCCT+GGG | - | chr1.2:5701188-5701207 | None:intergenic | 65.0% | |
| TGAGGAGCAGAAGCCGTCGC+AGG | - | chr1.2:5698701-5698720 | None:intergenic | 65.0% | |
| TGGCGTCAGCTCAGGCTGCT+GGG | - | chr1.2:5701032-5701051 | None:intergenic | 65.0% | |
| TGTGGGAGGGACCTTGAGCC+TGG | - | chr1.2:5701189-5701208 | None:intergenic | 65.0% | |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr1.2:5699853-5699872 | MS.gene27788:CDS | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | + | chr1.2:5699660-5699679 | MS.gene27788:CDS | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr1.2:5699607-5699626 | MS.gene27788:CDS | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | + | chr1.2:5699000-5699019 | MS.gene27788:CDS | 65.0% |
| CGTCAGCTCAGGCTGCTGGG+AGG | - | chr1.2:5701029-5701048 | None:intergenic | 70.0% | |
| CTGGCGTCAGCTCAGGCTGC+TGG | - | chr1.2:5701033-5701052 | None:intergenic | 70.0% | |
| GGGAGGACCCAGGTGATCCC+TGG | - | chr1.2:5698661-5698680 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 5698506 | 5701288 | 5698506 | ID=MS.gene27788 |
| chr1.2 | mRNA | 5698506 | 5701288 | 5698506 | ID=MS.gene27788.t1;Parent=MS.gene27788 |
| chr1.2 | exon | 5698506 | 5699098 | 5698506 | ID=MS.gene27788.t1.exon1;Parent=MS.gene27788.t1 |
| chr1.2 | CDS | 5698506 | 5699098 | 5698506 | ID=cds.MS.gene27788.t1;Parent=MS.gene27788.t1 |
| chr1.2 | exon | 5699174 | 5699300 | 5699174 | ID=MS.gene27788.t1.exon2;Parent=MS.gene27788.t1 |
| chr1.2 | CDS | 5699174 | 5699300 | 5699174 | ID=cds.MS.gene27788.t1;Parent=MS.gene27788.t1 |
| chr1.2 | exon | 5699391 | 5699681 | 5699391 | ID=MS.gene27788.t1.exon3;Parent=MS.gene27788.t1 |
| chr1.2 | CDS | 5699391 | 5699681 | 5699391 | ID=cds.MS.gene27788.t1;Parent=MS.gene27788.t1 |
| chr1.2 | exon | 5699773 | 5699874 | 5699773 | ID=MS.gene27788.t1.exon4;Parent=MS.gene27788.t1 |
| chr1.2 | CDS | 5699773 | 5699874 | 5699773 | ID=cds.MS.gene27788.t1;Parent=MS.gene27788.t1 |
| chr1.2 | exon | 5700827 | 5701288 | 5700827 | ID=MS.gene27788.t1.exon5;Parent=MS.gene27788.t1 |
| chr1.2 | CDS | 5700827 | 5701288 | 5700827 | ID=cds.MS.gene27788.t1;Parent=MS.gene27788.t1 |
| Gene Sequence |
| Protein sequence |
