Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27994.t1 | XP_013446714.1 | 97.4 | 704 | 18 | 0 | 1 | 704 | 1 | 704 | 0.00E+00 | 1406.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27994.t1 | Q9SS87 | 40.0 | 720 | 400 | 14 | 1 | 704 | 26 | 729 | 5.6e-151 | 536.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27994.t1 | A0A072TU76 | 97.4 | 704 | 18 | 0 | 1 | 704 | 1 | 704 | 0.0e+00 | 1406.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058909 | MS.gene27994 | 0.804085 | 2.56E-49 | -1.69E-46 |
| MS.gene058912 | MS.gene27994 | 0.808057 | 3.73E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27994.t1 | MTR_8g089660 | 97.443 | 704 | 18 | 0 | 1 | 704 | 1 | 704 | 0.0 | 1434 |
| MS.gene27994.t1 | MTR_3g075450 | 52.849 | 702 | 317 | 8 | 7 | 704 | 15 | 706 | 0.0 | 739 |
| MS.gene27994.t1 | MTR_7g032660 | 43.579 | 693 | 376 | 11 | 20 | 704 | 26 | 711 | 0.0 | 568 |
| MS.gene27994.t1 | MTR_1g074950 | 32.378 | 698 | 403 | 20 | 17 | 703 | 23 | 662 | 7.17e-105 | 334 |
| MS.gene27994.t1 | MTR_1g074990 | 31.602 | 693 | 414 | 23 | 17 | 703 | 22 | 660 | 1.00e-99 | 321 |
| MS.gene27994.t1 | MTR_1g075095 | 30.980 | 694 | 419 | 23 | 17 | 703 | 22 | 662 | 5.04e-96 | 311 |
| MS.gene27994.t1 | MTR_1g075230 | 30.914 | 689 | 419 | 21 | 22 | 704 | 26 | 663 | 2.15e-95 | 309 |
| MS.gene27994.t1 | MTR_1g075030 | 30.692 | 694 | 421 | 23 | 17 | 703 | 22 | 662 | 1.10e-93 | 305 |
| MS.gene27994.t1 | MTR_1g040360 | 29.078 | 705 | 422 | 24 | 20 | 703 | 30 | 677 | 1.02e-77 | 263 |
| MS.gene27994.t1 | MTR_1g075170 | 25.301 | 664 | 369 | 25 | 88 | 704 | 84 | 667 | 1.09e-46 | 176 |
| MS.gene27994.t1 | MTR_1g075180 | 27.202 | 647 | 372 | 24 | 87 | 704 | 60 | 636 | 3.43e-46 | 174 |
| MS.gene27994.t1 | MTR_1g075153 | 25.645 | 620 | 396 | 19 | 101 | 704 | 93 | 663 | 3.75e-44 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27994.t1 | AT3G01680 | 39.973 | 728 | 389 | 14 | 1 | 704 | 26 | 729 | 0.0 | 540 |
| MS.gene27994.t1 | AT3G01670 | 37.037 | 729 | 404 | 13 | 5 | 704 | 120 | 822 | 1.93e-154 | 468 |
| MS.gene27994.t1 | AT3G01670 | 37.037 | 729 | 404 | 13 | 5 | 704 | 144 | 846 | 5.14e-154 | 468 |
| MS.gene27994.t1 | AT1G67790 | 27.518 | 705 | 451 | 22 | 13 | 700 | 3 | 664 | 8.27e-74 | 252 |
Find 174 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATAATTTGGTTCTTC+TGG | 0.159542 | 4.4:+11665857 | MS.gene27994:CDS |
| AGCCAATGATGCCGAAAATA+TGG | 0.210391 | 4.4:-11663967 | None:intergenic |
| TTATTCCTAGTGCTGTTTAT+TGG | 0.210745 | 4.4:+11663915 | MS.gene27994:CDS |
| TCATTATTTCTAGCATTATT+TGG | 0.215889 | 4.4:-11665939 | None:intergenic |
| TGGTTCACAGCTTCGAATTT+AGG | 0.226976 | 4.4:-11663785 | None:intergenic |
| GTGGAAGCAGTCAACGTTTC+AGG | 0.227141 | 4.4:-11663890 | None:intergenic |
| CAGCCAACCTAGGGGAATTC+TGG | 0.232894 | 4.4:+11663666 | MS.gene27994:CDS |
| CTAAATCAAGTTGATGATTT+AGG | 0.243441 | 4.4:+11663761 | MS.gene27994:CDS |
| GTGCTGTTTATTGGACTATT+AGG | 0.252462 | 4.4:+11663924 | MS.gene27994:CDS |
| CTTATCCTTTCTCTAGCTTA+AGG | 0.273091 | 4.4:+11665120 | MS.gene27994:CDS |
| AAAGTCAATATGAACTTGTT+TGG | 0.301575 | 4.4:+11664859 | MS.gene27994:CDS |
| TCGCCGACCCAACAATAATT+TGG | 0.306777 | 4.4:+11665848 | MS.gene27994:CDS |
| GCCATCTGTCGTCAACATTT+AGG | 0.310486 | 4.4:+11664195 | MS.gene27994:CDS |
| TTGATCCATTACTCTTTGAT+TGG | 0.312322 | 4.4:+11665198 | MS.gene27994:CDS |
| CTTGTATGGAGGGGATGATA+TGG | 0.322988 | 4.4:+11665675 | MS.gene27994:CDS |
| AACAATAATTTGGTTCTTCT+GGG | 0.325317 | 4.4:+11665858 | MS.gene27994:CDS |
| CAACCTCTTGATCAGATATA+TGG | 0.329559 | 4.4:-11664785 | None:intergenic |
| AGTTTATGACCCTTCACTTC+TGG | 0.343500 | 4.4:+11664965 | MS.gene27994:CDS |
| GGTGCAAATGGGTGTCATTA+AGG | 0.345730 | 4.4:+11663138 | MS.gene27994:CDS |
| CACCAACCGTCTTGCTAAAT+CGG | 0.347696 | 4.4:+11663709 | MS.gene27994:CDS |
| TTCTGGAGCCGGCAAGTATC+AGG | 0.351408 | 4.4:+11664982 | MS.gene27994:CDS |
| CAGTACACATGATGTGGATT+TGG | 0.360665 | 4.4:+11665087 | MS.gene27994:CDS |
| TTATCCTTTCTCTAGCTTAA+GGG | 0.366997 | 4.4:+11665121 | MS.gene27994:CDS |
| TTTCTAACCTTGTTGAATCT+TGG | 0.368924 | 4.4:-11664839 | None:intergenic |
| AGTACACATGATGTGGATTT+GGG | 0.370269 | 4.4:+11665088 | MS.gene27994:CDS |
| GATCCGTTGCCATTGTTTGA+TGG | 0.373654 | 4.4:+11664523 | MS.gene27994:CDS |
| GCTTAAGGGAGGAAGCTCTT+TGG | 0.376320 | 4.4:+11665135 | MS.gene27994:CDS |
| GGCAAGTATCAGGTACATTA+AGG | 0.376593 | 4.4:+11664992 | MS.gene27994:CDS |
| TCTCATCCCTGACATCATTC+AGG | 0.378967 | 4.4:+11663014 | MS.gene27994:CDS |
| TGTAACAGGTTAATACTTCC+AGG | 0.385524 | 4.4:+11666156 | MS.gene27994:CDS |
| ACATCAACATGTTCTTCAAT+TGG | 0.386844 | 4.4:-11662943 | None:intergenic |
| GAATGTTATCAAGCTATTCA+TGG | 0.387548 | 4.4:+11663609 | MS.gene27994:CDS |
| TTGATAGCAGTGATCTTGGT+TGG | 0.389293 | 4.4:+11665974 | MS.gene27994:CDS |
| TTGGATTCCAATTGTGGAAA+AGG | 0.390783 | 4.4:+11664878 | MS.gene27994:CDS |
| ATCTCACCAGGATAACATTA+AGG | 0.393914 | 4.4:+11664471 | MS.gene27994:CDS |
| TGATAGCAGTGATCTTGGTT+GGG | 0.396003 | 4.4:+11665975 | MS.gene27994:CDS |
| TTAATACTTCCAGGAGTTGA+TGG | 0.396920 | 4.4:+11666165 | MS.gene27994:CDS |
| AACAACCACATCATTGTAAC+AGG | 0.400553 | 4.4:+11666142 | MS.gene27994:CDS |
| TCAACGTTTCAGGTGCTTCA+TGG | 0.401328 | 4.4:-11663880 | None:intergenic |
| GTCTAGCTTCTGAGTCAAAC+TGG | 0.402501 | 4.4:-11664142 | None:intergenic |
| ACAGGGAAAGCAGGTGCAAA+TGG | 0.405892 | 4.4:+11663126 | MS.gene27994:intron |
| CCTGGTGAGATGTCTCAAAA+AGG | 0.408664 | 4.4:-11664459 | None:intergenic |
| TGATCCATTACTCTTTGATT+GGG | 0.417724 | 4.4:+11665199 | MS.gene27994:CDS |
| AACATGGGGACTTGCACTAT+TGG | 0.418376 | 4.4:+11665166 | MS.gene27994:CDS |
| TTAATGTACCTGATACTTGC+CGG | 0.419081 | 4.4:-11664990 | None:intergenic |
| AGCTTTGATAGCAGTGATCT+TGG | 0.420787 | 4.4:+11665970 | MS.gene27994:CDS |
| ACATCATGTGTACTGCATTC+AGG | 0.422398 | 4.4:-11665079 | None:intergenic |
| GGCAAATACATATGCTTGTA+TGG | 0.423354 | 4.4:+11665661 | MS.gene27994:CDS |
| GGCATCATTGGCTTGGGTCA+AGG | 0.427388 | 4.4:+11663977 | MS.gene27994:CDS |
| TTAGAACCTTAATGTTATCC+TGG | 0.432692 | 4.4:-11664477 | None:intergenic |
| CTGCCTTCAGGTTAGCATTG+AGG | 0.432974 | 4.4:+11664719 | MS.gene27994:intron |
| CAGAAGAACCAAATTATTGT+TGG | 0.434260 | 4.4:-11665856 | None:intergenic |
| CTGGAAAGCTCCCATGTCTC+TGG | 0.441466 | 4.4:-11664123 | None:intergenic |
| CCAACATGGCCTTGAGAAGA+TGG | 0.452960 | 4.4:-11663805 | None:intergenic |
| TTCTATGCTAACCCTTTGCT+TGG | 0.456050 | 4.4:-11664551 | None:intergenic |
| GCCACAGCCATAGGAATACT+TGG | 0.462169 | 4.4:+11663587 | MS.gene27994:CDS |
| TGGATTCCAATTGTGGAAAA+GGG | 0.462360 | 4.4:+11664879 | MS.gene27994:CDS |
| GGAATTGTTCCATCAACTCC+TGG | 0.465713 | 4.4:-11666174 | None:intergenic |
| CAGCATTTGCAGCCAACCTA+GGG | 0.467499 | 4.4:+11663657 | MS.gene27994:CDS |
| ACACATACCTGAATGATGTC+AGG | 0.469745 | 4.4:-11663021 | None:intergenic |
| TCATGGTCAATGTACTGATC+AGG | 0.470291 | 4.4:-11663863 | None:intergenic |
| CACTGGAAATGATGTATGTA+GGG | 0.475708 | 4.4:+11665755 | MS.gene27994:CDS |
| AGAAGAACCAAATTATTGTT+GGG | 0.477001 | 4.4:-11665855 | None:intergenic |
| AAGGGTGATGTGAATGATAA+AGG | 0.477561 | 4.4:+11666081 | MS.gene27994:CDS |
| TAACATTCCAAGTATTCCTA+TGG | 0.480889 | 4.4:-11663594 | None:intergenic |
| GATCACTGCTATCAAAGCTT+AGG | 0.481506 | 4.4:-11665966 | None:intergenic |
| TGTTACAATGATGTGGTTGT+TGG | 0.481648 | 4.4:-11666140 | None:intergenic |
| TCAGCACATACAATCTTGTC+TGG | 0.484584 | 4.4:-11666195 | None:intergenic |
| CGATTTAGCAAGACGGTTGG+TGG | 0.490770 | 4.4:-11663708 | None:intergenic |
| GCCAATGATGCCGAAAATAT+GGG | 0.491206 | 4.4:-11663966 | None:intergenic |
| CCACTGGAAATGATGTATGT+AGG | 0.492407 | 4.4:+11665754 | MS.gene27994:CDS |
| TGACCCTTCACTTCTGGAGC+CGG | 0.494397 | 4.4:+11664971 | MS.gene27994:CDS |
| GCTTGTGGTGTTGGATCCAC+AGG | 0.494474 | 4.4:+11665043 | MS.gene27994:CDS |
| GCATCATTGGCTTGGGTCAA+GGG | 0.496479 | 4.4:+11663978 | MS.gene27994:CDS |
| GCAGCATTTGCAGCCAACCT+AGG | 0.498859 | 4.4:+11663656 | MS.gene27994:CDS |
| ACTTGTTTGGATTCCAATTG+TGG | 0.500335 | 4.4:+11664872 | MS.gene27994:CDS |
| TAATTTGGTTCTTCTGGGTG+AGG | 0.500516 | 4.4:+11665863 | MS.gene27994:CDS |
| ACCTAAATGTTGACGACAGA+TGG | 0.501887 | 4.4:-11664196 | None:intergenic |
| CACAAGTGCTGCAAAATCAA+TGG | 0.502401 | 4.4:+11665714 | MS.gene27994:CDS |
| GGGATGATATGGGATGGATC+AGG | 0.503407 | 4.4:+11665686 | MS.gene27994:CDS |
| CTCTTTGGAAAGATGAAACA+TGG | 0.504100 | 4.4:+11665150 | MS.gene27994:CDS |
| TTGTATGGAGGGGATGATAT+GGG | 0.504896 | 4.4:+11665676 | MS.gene27994:CDS |
| TGTATGTAATCATCCATTGC+AGG | 0.507632 | 4.4:-11666111 | None:intergenic |
| TGATGGTTCTACCAAGCAAA+GGG | 0.508257 | 4.4:+11664540 | MS.gene27994:CDS |
| AAAGCCAATGCTTGTGGTGT+TGG | 0.516875 | 4.4:+11665034 | MS.gene27994:CDS |
| AATGTTATCAAGCTATTCAT+GGG | 0.520097 | 4.4:+11663610 | MS.gene27994:CDS |
| CAACACAAAGCCAATGCTTG+TGG | 0.522568 | 4.4:+11665028 | MS.gene27994:CDS |
| AAAAGCTTTGATTCGCTGCA+AGG | 0.522723 | 4.4:+11664498 | MS.gene27994:CDS |
| CAGAAGCTAGACAGCATGAA+TGG | 0.523616 | 4.4:+11664153 | MS.gene27994:CDS |
| CTAACCCAATCAAAGAGTAA+TGG | 0.523816 | 4.4:-11665203 | None:intergenic |
| GATATCTTGCAAGTGTATGA+TGG | 0.525160 | 4.4:+11663547 | MS.gene27994:intron |
| CTTGCAAGTGTATGATGGGT+GGG | 0.527555 | 4.4:+11663552 | MS.gene27994:CDS |
| CAGGGAAAGCAGGTGCAAAT+GGG | 0.534533 | 4.4:+11663127 | MS.gene27994:intron |
| TGTGGCGCATAGCTCTAGAT+TGG | 0.538177 | 4.4:-11662864 | None:intergenic |
| TCCACTCATCCAACTCATCA+AGG | 0.539782 | 4.4:-11666059 | None:intergenic |
| GATGCTCATGCCACAGCCAT+AGG | 0.540232 | 4.4:+11663578 | MS.gene27994:CDS |
| GGTGTTGGATCCACAGGGGA+AGG | 0.541944 | 4.4:+11665049 | MS.gene27994:CDS |
| GGATCCAACACCACAAGCAT+TGG | 0.543209 | 4.4:-11665038 | None:intergenic |
| TTCTTCAATTGGAGCATGAG+TGG | 0.548840 | 4.4:-11662932 | None:intergenic |
| GTCAAATAAGTCAGACTCGT+TGG | 0.549098 | 4.4:-11663167 | None:intergenic |
| AAGCCAGAATTCCCCTAGGT+TGG | 0.550403 | 4.4:-11663669 | None:intergenic |
| TCCTCCCTTAAGCTAGAGAA+AGG | 0.552077 | 4.4:-11665125 | None:intergenic |
| TTGGACTATTAGGAGTATTG+TGG | 0.552549 | 4.4:+11663934 | MS.gene27994:CDS |
| CCATCTTCTCAAGGCCATGT+TGG | 0.553276 | 4.4:+11663805 | MS.gene27994:CDS |
| CCACCATATATCTGATCAAG+AGG | 0.555144 | 4.4:+11664782 | MS.gene27994:CDS |
| AGGTTAGCATTGAGGTGTTG+AGG | 0.556064 | 4.4:+11664727 | MS.gene27994:intron |
| AATACATATGCTTGTATGGA+GGG | 0.557127 | 4.4:+11665665 | MS.gene27994:CDS |
| TGCTGAGTGTGGCCAGCCAA+TGG | 0.557768 | 4.4:+11666212 | MS.gene27994:CDS |
| TCCAAGTATTCCTATGGCTG+TGG | 0.558646 | 4.4:-11663588 | None:intergenic |
| TGATGAGTTGGATGAGTGGA+AGG | 0.558717 | 4.4:+11666062 | MS.gene27994:CDS |
| GAACCAAATTATTGTTGGGT+CGG | 0.565403 | 4.4:-11665851 | None:intergenic |
| TTTAAAGTGCCTTGATGAGT+TGG | 0.567126 | 4.4:+11666050 | MS.gene27994:CDS |
| TCATTGTTTCAGGTAACGGC+AGG | 0.571139 | 4.4:+11665640 | MS.gene27994:intron |
| TGACATCAACACCAGAGACA+TGG | 0.573287 | 4.4:+11664112 | MS.gene27994:CDS |
| CCTACATACATCATTTCCAG+TGG | 0.574920 | 4.4:-11665754 | None:intergenic |
| ATAGTCCAATAAACAGCACT+AGG | 0.579722 | 4.4:-11663920 | None:intergenic |
| GACTGCAATCAATGATGCCA+TGG | 0.581079 | 4.4:+11664937 | MS.gene27994:CDS |
| GATGTGGATTTGGGGAAGCA+TGG | 0.581300 | 4.4:+11665097 | MS.gene27994:CDS |
| TTGCAAGTGTATGATGGGTG+GGG | 0.583049 | 4.4:+11663553 | MS.gene27994:CDS |
| AGCTGTGAACCATCTTCTCA+AGG | 0.587074 | 4.4:+11663796 | MS.gene27994:CDS |
| GCAATGGATGATTACATACA+AGG | 0.587303 | 4.4:+11666114 | MS.gene27994:CDS |
| TTGATGGTTCTACCAAGCAA+AGG | 0.587353 | 4.4:+11664539 | MS.gene27994:CDS |
| GACATCAACACCAGAGACAT+GGG | 0.591282 | 4.4:+11664113 | MS.gene27994:CDS |
| CTTGCCGGCTCCAGAAGTGA+AGG | 0.593649 | 4.4:-11664975 | None:intergenic |
| TCTTGCAAGTGTATGATGGG+TGG | 0.595387 | 4.4:+11663551 | MS.gene27994:CDS |
| TGCAAGTGTATGATGGGTGG+GGG | 0.599102 | 4.4:+11663554 | MS.gene27994:CDS |
| AAGCTATTCATGGGATGCCA+AGG | 0.599229 | 4.4:+11663619 | MS.gene27994:CDS |
| AACCGATTTAGCAAGACGGT+TGG | 0.600581 | 4.4:-11663711 | None:intergenic |
| CACATACCTGAATGATGTCA+GGG | 0.601333 | 4.4:-11663020 | None:intergenic |
| TCCTTTCTCTAGCTTAAGGG+AGG | 0.602422 | 4.4:+11665124 | MS.gene27994:CDS |
| CCTCTTGATCAGATATATGG+TGG | 0.603203 | 4.4:-11664782 | None:intergenic |
| CTTGATCAGATATATGGTGG+AGG | 0.605091 | 4.4:-11664779 | None:intergenic |
| TGCTAATGCTATCACCACCT+TGG | 0.608163 | 4.4:-11663636 | None:intergenic |
| AATTAACAAAATTTCATGCG+AGG | 0.609758 | 4.4:+11663213 | MS.gene27994:CDS |
| GCCTTGATGAGTTGGATGAG+TGG | 0.611429 | 4.4:+11666058 | MS.gene27994:CDS |
| ATACATATGCTTGTATGGAG+GGG | 0.612025 | 4.4:+11665666 | MS.gene27994:CDS |
| AACAGCACTAGGAATAAGAG+TGG | 0.612767 | 4.4:-11663909 | None:intergenic |
| GCTCTAGATTGGTTCTTCCG+TGG | 0.618668 | 4.4:-11662853 | None:intergenic |
| ATATCTTGCAAGTGTATGAT+GGG | 0.620245 | 4.4:+11663548 | MS.gene27994:CDS |
| TCTTTGGAAAGATGAAACAT+GGG | 0.627324 | 4.4:+11665151 | MS.gene27994:CDS |
| AAGAACTCTACAAATTCCAC+TGG | 0.628463 | 4.4:+11665738 | MS.gene27994:CDS |
| AGGCACAGTAAGAATGACAC+AGG | 0.628719 | 4.4:+11666011 | MS.gene27994:CDS |
| CAGGGATGAGAGAAGCTGCA+TGG | 0.630283 | 4.4:-11663002 | None:intergenic |
| GAACCATCAAACAATGGCAA+CGG | 0.633219 | 4.4:-11664526 | None:intergenic |
| TCAGGTACATTAAGGAGGTG+TGG | 0.633877 | 4.4:+11665000 | MS.gene27994:CDS |
| CTACAAGCCAGAATTCCCCT+AGG | 0.640741 | 4.4:-11663673 | None:intergenic |
| ATTAACCTGTTACAATGATG+TGG | 0.642311 | 4.4:-11666147 | None:intergenic |
| ATGGAGGGGATGATATGGGA+TGG | 0.644957 | 4.4:+11665680 | MS.gene27994:CDS |
| GGTTGGGCTATAATAAGTCA+AGG | 0.646453 | 4.4:+11665991 | MS.gene27994:CDS |
| TGAATGCAGTACACATGATG+TGG | 0.648791 | 4.4:+11665081 | MS.gene27994:CDS |
| AGGTTCACAACCTTCCCCTG+TGG | 0.653743 | 4.4:-11665059 | None:intergenic |
| CAATTGGAGCATGAGTGGCG+CGG | 0.654595 | 4.4:-11662927 | None:intergenic |
| GTAAGAATGACACAGGGCAA+AGG | 0.655395 | 4.4:+11666018 | MS.gene27994:CDS |
| TTGCCGGCTCCAGAAGTGAA+GGG | 0.656832 | 4.4:-11664974 | None:intergenic |
| AAATACATATGCTTGTATGG+AGG | 0.657822 | 4.4:+11665664 | MS.gene27994:CDS |
| CTATTCATGGGATGCCAAGG+TGG | 0.659627 | 4.4:+11663622 | MS.gene27994:CDS |
| TCTTGAACAACATTAAGTAG+AGG | 0.666397 | 4.4:-11662970 | None:intergenic |
| TATGTAGGGAAAAGCAACCC+AGG | 0.668054 | 4.4:+11665769 | MS.gene27994:CDS |
| AAGTATCAGGTACATTAAGG+AGG | 0.672143 | 4.4:+11664995 | MS.gene27994:CDS |
| GGGTGAGGCTTGAAAGCATG+TGG | 0.673518 | 4.4:+11665878 | MS.gene27994:CDS |
| GCAATCAGTAACATCCAACA+TGG | 0.677386 | 4.4:-11663819 | None:intergenic |
| TTGGTAGAACCATCAAACAA+TGG | 0.687980 | 4.4:-11664532 | None:intergenic |
| CTTTGGAAAGATGAAACATG+GGG | 0.692368 | 4.4:+11665152 | MS.gene27994:CDS |
| GGGTCATAAACTGAGTACCA+TGG | 0.693180 | 4.4:-11664954 | None:intergenic |
| TTGTGGAAAAGGGAGCCTCG+TGG | 0.696404 | 4.4:+11664889 | MS.gene27994:CDS |
| ATGCAACCGATTTAGCAAGA+CGG | 0.703963 | 4.4:-11663715 | None:intergenic |
| AATCACGCCAAGATTCAACA+AGG | 0.707641 | 4.4:+11664832 | MS.gene27994:CDS |
| AAGATTGTATGTGCTGAGTG+TGG | 0.709803 | 4.4:+11666201 | MS.gene27994:CDS |
| AGCATTTGCAGCCAACCTAG+GGG | 0.713294 | 4.4:+11663658 | MS.gene27994:CDS |
| CTTGTGGTGTTGGATCCACA+GGG | 0.731219 | 4.4:+11665044 | MS.gene27994:CDS |
| GATGAGTTGGATGAGTGGAA+GGG | 0.734062 | 4.4:+11666063 | MS.gene27994:CDS |
| GGCACAGTAAGAATGACACA+GGG | 0.746683 | 4.4:+11666012 | MS.gene27994:CDS |
| GTACACATGATGTGGATTTG+GGG | 0.748134 | 4.4:+11665089 | MS.gene27994:CDS |
| TTGTGGTGTTGGATCCACAG+GGG | 0.840678 | 4.4:+11665045 | MS.gene27994:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGATCAAAAGTTAAA+TGG | - | chr4.4:11665395-11665414 | None:intergenic | 15.0% |
| !!! | AGTATAATAATTGTTCTTTT+GGG | + | chr4.4:11665414-11665433 | MS.gene27994:intron | 15.0% |
| !!! | TAGTATAATAATTGTTCTTT+TGG | + | chr4.4:11665413-11665432 | MS.gene27994:intron | 15.0% |
| !! | ATATAGAGAATGAAAAACAT+AGG | - | chr4.4:11665230-11665249 | None:intergenic | 20.0% |
| !! | ATCTTATTATTCATTGTTTC+AGG | + | chr4.4:11665630-11665649 | MS.gene27994:intron | 20.0% |
| !! | GAATAATAAGATCAAAAGAA+CGG | - | chr4.4:11665622-11665641 | None:intergenic | 20.0% |
| !! | TTATAACAGACTTTATGAAT+CGG | - | chr4.4:11665519-11665538 | None:intergenic | 20.0% |
| !!! | ACATTTAAGATATTTGTTGT+TGG | - | chr4.4:11664038-11664057 | None:intergenic | 20.0% |
| !!! | ATCTAGTTCTAGAAAATATT+CGG | - | chr4.4:11663483-11663502 | None:intergenic | 20.0% |
| !!! | TCATTATTTCTAGCATTATT+TGG | - | chr4.4:11665942-11665961 | None:intergenic | 20.0% |
| !!! | TTGTTTTGAAATTTTACACA+GGG | + | chr4.4:11663109-11663128 | MS.gene27994:intron | 20.0% |
| ! | AATGTTATCAAGCTATTCAT+GGG | + | chr4.4:11663610-11663629 | MS.gene27994:CDS | 25.0% |
| ! | AATTAACAAAATTTCATGCG+AGG | + | chr4.4:11663213-11663232 | MS.gene27994:CDS | 25.0% |
| ! | AGAAGAACCAAATTATTGTT+GGG | - | chr4.4:11665858-11665877 | None:intergenic | 25.0% |
| ! | ATTTAAACATGTAATTCCCA+TGG | - | chr4.4:11665449-11665468 | None:intergenic | 25.0% |
| ! | CAATATTGTCACTCATATTT+GGG | - | chr4.4:11663421-11663440 | None:intergenic | 25.0% |
| ! | CTTTGATTGCTAAAATATAG+CGG | + | chr4.4:11664227-11664246 | MS.gene27994:intron | 25.0% |
| ! | GTTAATTAACTATGTGTTTG+TGG | + | chr4.4:11663086-11663105 | MS.gene27994:intron | 25.0% |
| ! | TCAATATTGTCACTCATATT+TGG | - | chr4.4:11663422-11663441 | None:intergenic | 25.0% |
| ! | TCTGTTATAAACAATCTTCT+TGG | + | chr4.4:11665529-11665548 | MS.gene27994:intron | 25.0% |
| !! | AAAGTCAATATGAACTTGTT+TGG | + | chr4.4:11664859-11664878 | MS.gene27994:CDS | 25.0% |
| !! | TTATTCATTGTTTCAGGTAA+CGG | + | chr4.4:11665636-11665655 | MS.gene27994:intron | 25.0% |
| !!! | AACAATAATTTGGTTCTTCT+GGG | + | chr4.4:11665858-11665877 | MS.gene27994:CDS | 25.0% |
| !!! | CTAAATCAAGTTGATGATTT+AGG | + | chr4.4:11663761-11663780 | MS.gene27994:CDS | 25.0% |
| !!! | GTTGTTTTGAAATTTTACAC+AGG | + | chr4.4:11663108-11663127 | MS.gene27994:intron | 25.0% |
| !!! | TGTTTTGCTTTGTTGTAATT+TGG | - | chr4.4:11665908-11665927 | None:intergenic | 25.0% |
| AAATACATATGCTTGTATGG+AGG | + | chr4.4:11665664-11665683 | MS.gene27994:CDS | 30.0% | |
| AATACATATGCTTGTATGGA+GGG | + | chr4.4:11665665-11665684 | MS.gene27994:CDS | 30.0% | |
| ACATCAACATGTTCTTCAAT+TGG | - | chr4.4:11662946-11662965 | None:intergenic | 30.0% | |
| ATATCTTGCAAGTGTATGAT+GGG | + | chr4.4:11663548-11663567 | MS.gene27994:CDS | 30.0% | |
| ATTAACCTGTTACAATGATG+TGG | - | chr4.4:11666150-11666169 | None:intergenic | 30.0% | |
| CAGAAGAACCAAATTATTGT+TGG | - | chr4.4:11665859-11665878 | None:intergenic | 30.0% | |
| CGTCAACATTTAGGTAATTA+AGG | + | chr4.4:11664204-11664223 | MS.gene27994:intron | 30.0% | |
| GAATGTTATCAAGCTATTCA+TGG | + | chr4.4:11663609-11663628 | MS.gene27994:CDS | 30.0% | |
| GAGCTTGTAGAAACAATTTA+CGG | - | chr4.4:11663397-11663416 | None:intergenic | 30.0% | |
| GCATAACCAAACTAATAAAG+TGG | + | chr4.4:11665265-11665284 | MS.gene27994:intron | 30.0% | |
| TAACATTCCAAGTATTCCTA+TGG | - | chr4.4:11663597-11663616 | None:intergenic | 30.0% | |
| TCTTGAACAACATTAAGTAG+AGG | - | chr4.4:11662973-11662992 | None:intergenic | 30.0% | |
| TGATCCATTACTCTTTGATT+GGG | + | chr4.4:11665199-11665218 | MS.gene27994:CDS | 30.0% | |
| TGTTACAAAAAATGCATTGC+CGG | + | chr4.4:11663448-11663467 | MS.gene27994:intron | 30.0% | |
| TTAGAACCTTAATGTTATCC+TGG | - | chr4.4:11664480-11664499 | None:intergenic | 30.0% | |
| TTGATCCATTACTCTTTGAT+TGG | + | chr4.4:11665198-11665217 | MS.gene27994:CDS | 30.0% | |
| TTTCTAACCTTGTTGAATCT+TGG | - | chr4.4:11664842-11664861 | None:intergenic | 30.0% | |
| ! | AACACTGTATGGTTTTTCTT+TGG | + | chr4.4:11664347-11664366 | MS.gene27994:intron | 30.0% |
| ! | ACACTGTATGGTTTTTCTTT+GGG | + | chr4.4:11664348-11664367 | MS.gene27994:intron | 30.0% |
| ! | AGTTAGCCACTTTATTAGTT+TGG | - | chr4.4:11665274-11665293 | None:intergenic | 30.0% |
| ! | CGTAGTATCATTATGCTTTT+TGG | + | chr4.4:11663061-11663080 | MS.gene27994:intron | 30.0% |
| ! | TACATGTAGAACTTTTCCAT+TGG | - | chr4.4:11666231-11666250 | None:intergenic | 30.0% |
| ! | TCCAGTAACTAAATTGACTT+AGG | - | chr4.4:11664284-11664303 | None:intergenic | 30.0% |
| ! | TCTTTGGAAAGATGAAACAT+GGG | + | chr4.4:11665151-11665170 | MS.gene27994:CDS | 30.0% |
| ! | TTATCCTTTCTCTAGCTTAA+GGG | + | chr4.4:11665121-11665140 | MS.gene27994:CDS | 30.0% |
| !! | ATAATCATTTTTCTGCCTTC+AGG | + | chr4.4:11664707-11664726 | MS.gene27994:intron | 30.0% |
| !! | CAACAATAATTTGGTTCTTC+TGG | + | chr4.4:11665857-11665876 | MS.gene27994:CDS | 30.0% |
| !! | TTATTCCTAGTGCTGTTTAT+TGG | + | chr4.4:11663915-11663934 | MS.gene27994:CDS | 30.0% |
| !!! | AAATATTCGGTTTTTAGTGC+CGG | - | chr4.4:11663470-11663489 | None:intergenic | 30.0% |
| !!! | AGTTGCTAATTTTGATTGTC+CGG | - | chr4.4:11665568-11665587 | None:intergenic | 30.0% |
| !!! | ATTCTTTTAACTTTCTGTCC+TGG | - | chr4.4:11665790-11665809 | None:intergenic | 30.0% |
| !!! | CTCAAACTTCTGTTTTGTTT+CGG | - | chr4.4:11664916-11664935 | None:intergenic | 30.0% |
| !!! | TTCTTTTAACTTTCTGTCCT+GGG | - | chr4.4:11665789-11665808 | None:intergenic | 30.0% |
| AACAACCACATCATTGTAAC+AGG | + | chr4.4:11666142-11666161 | MS.gene27994:CDS | 35.0% | |
| AACTGTCGTGTATTTGATGA+AGG | - | chr4.4:11665329-11665348 | None:intergenic | 35.0% | |
| AAGAACTCTACAAATTCCAC+TGG | + | chr4.4:11665738-11665757 | MS.gene27994:CDS | 35.0% | |
| AAGGGTGATGTGAATGATAA+AGG | + | chr4.4:11666081-11666100 | MS.gene27994:CDS | 35.0% | |
| AAGTATCAGGTACATTAAGG+AGG | + | chr4.4:11664995-11665014 | MS.gene27994:CDS | 35.0% | |
| ACTTGTTTGGATTCCAATTG+TGG | + | chr4.4:11664872-11664891 | MS.gene27994:CDS | 35.0% | |
| AGTACACATGATGTGGATTT+GGG | + | chr4.4:11665088-11665107 | MS.gene27994:CDS | 35.0% | |
| ATACATATGCTTGTATGGAG+GGG | + | chr4.4:11665666-11665685 | MS.gene27994:CDS | 35.0% | |
| ATAGTCCAATAAACAGCACT+AGG | - | chr4.4:11663923-11663942 | None:intergenic | 35.0% | |
| ATCTCACCAGGATAACATTA+AGG | + | chr4.4:11664471-11664490 | MS.gene27994:CDS | 35.0% | |
| CAACCTCTTGATCAGATATA+TGG | - | chr4.4:11664788-11664807 | None:intergenic | 35.0% | |
| CACTGGAAATGATGTATGTA+GGG | + | chr4.4:11665755-11665774 | MS.gene27994:CDS | 35.0% | |
| CTAACCCAATCAAAGAGTAA+TGG | - | chr4.4:11665206-11665225 | None:intergenic | 35.0% | |
| GAACCAAATTATTGTTGGGT+CGG | - | chr4.4:11665854-11665873 | None:intergenic | 35.0% | |
| GATATCTTGCAAGTGTATGA+TGG | + | chr4.4:11663547-11663566 | MS.gene27994:intron | 35.0% | |
| GCAATGGATGATTACATACA+AGG | + | chr4.4:11666114-11666133 | MS.gene27994:CDS | 35.0% | |
| GCCTAAGTCAATTTAGTTAC+TGG | + | chr4.4:11664280-11664299 | MS.gene27994:intron | 35.0% | |
| GCTATTGTCATAAGCTATCT+TGG | + | chr4.4:11663331-11663350 | MS.gene27994:intron | 35.0% | |
| GGCAAATACATATGCTTGTA+TGG | + | chr4.4:11665661-11665680 | MS.gene27994:CDS | 35.0% | |
| GTGTATTTGATGAAGGAGAA+AGG | - | chr4.4:11665322-11665341 | None:intergenic | 35.0% | |
| GTGTGTTAATCATGAAGATG+AGG | + | chr4.4:11664320-11664339 | MS.gene27994:intron | 35.0% | |
| TAAATATGCATGCTGATGCA+TGG | - | chr4.4:11663253-11663272 | None:intergenic | 35.0% | |
| TGGATTCCAATTGTGGAAAA+GGG | + | chr4.4:11664879-11664898 | MS.gene27994:CDS | 35.0% | |
| TGTAACAGGTTAATACTTCC+AGG | + | chr4.4:11666156-11666175 | MS.gene27994:CDS | 35.0% | |
| TGTATGTAATCATCCATTGC+AGG | - | chr4.4:11666114-11666133 | None:intergenic | 35.0% | |
| TGTTACAATGATGTGGTTGT+TGG | - | chr4.4:11666143-11666162 | None:intergenic | 35.0% | |
| TTAATACTTCCAGGAGTTGA+TGG | + | chr4.4:11666165-11666184 | MS.gene27994:CDS | 35.0% | |
| TTAATGTACCTGATACTTGC+CGG | - | chr4.4:11664993-11665012 | None:intergenic | 35.0% | |
| TTGGATTCCAATTGTGGAAA+AGG | + | chr4.4:11664878-11664897 | MS.gene27994:CDS | 35.0% | |
| TTGGTAGAACCATCAAACAA+TGG | - | chr4.4:11664535-11664554 | None:intergenic | 35.0% | |
| TTTGATTGTCCGGTCTTAAT+CGG | - | chr4.4:11665558-11665577 | None:intergenic | 35.0% | |
| ! | AAATTTTACACAGGGAAAGC+AGG | + | chr4.4:11663117-11663136 | MS.gene27994:intron | 35.0% |
| ! | CTCTTTGGAAAGATGAAACA+TGG | + | chr4.4:11665150-11665169 | MS.gene27994:CDS | 35.0% |
| ! | CTTATCCTTTCTCTAGCTTA+AGG | + | chr4.4:11665120-11665139 | MS.gene27994:CDS | 35.0% |
| ! | CTTTGGAAAGATGAAACATG+GGG | + | chr4.4:11665152-11665171 | MS.gene27994:CDS | 35.0% |
| ! | GCTCAGATTTTCGTCATATA+TGG | - | chr4.4:11665821-11665840 | None:intergenic | 35.0% |
| ! | TTTAAAGTGCCTTGATGAGT+TGG | + | chr4.4:11666050-11666069 | MS.gene27994:CDS | 35.0% |
| !! | AAGATATTTGTTGTTGGTGC+AGG | - | chr4.4:11664032-11664051 | None:intergenic | 35.0% |
| !! | GTGCTGTTTATTGGACTATT+AGG | + | chr4.4:11663924-11663943 | MS.gene27994:CDS | 35.0% |
| !! | TGCTAAAATATAGCGGATAG+CGG | + | chr4.4:11664234-11664253 | MS.gene27994:intron | 35.0% |
| !! | TTGGACTATTAGGAGTATTG+TGG | + | chr4.4:11663934-11663953 | MS.gene27994:CDS | 35.0% |
| !! | TTTTTCGGCATCAGATGATA+CGG | + | chr4.4:11662888-11662907 | MS.gene27994:CDS | 35.0% |
| AACAGCACTAGGAATAAGAG+TGG | - | chr4.4:11663912-11663931 | None:intergenic | 40.0% | |
| AAGATTGTATGTGCTGAGTG+TGG | + | chr4.4:11666201-11666220 | MS.gene27994:CDS | 40.0% | |
| AATCACGCCAAGATTCAACA+AGG | + | chr4.4:11664832-11664851 | MS.gene27994:CDS | 40.0% | |
| ACACATACCTGAATGATGTC+AGG | - | chr4.4:11663024-11663043 | None:intergenic | 40.0% | |
| ACATCATGTGTACTGCATTC+AGG | - | chr4.4:11665082-11665101 | None:intergenic | 40.0% | |
| ACCTAAATGTTGACGACAGA+TGG | - | chr4.4:11664199-11664218 | None:intergenic | 40.0% | |
| AGCCAATGATGCCGAAAATA+TGG | - | chr4.4:11663970-11663989 | None:intergenic | 40.0% | |
| AGTTTATGACCCTTCACTTC+TGG | + | chr4.4:11664965-11664984 | MS.gene27994:CDS | 40.0% | |
| CACATACCTGAATGATGTCA+GGG | - | chr4.4:11663023-11663042 | None:intergenic | 40.0% | |
| CAGTACACATGATGTGGATT+TGG | + | chr4.4:11665087-11665106 | MS.gene27994:CDS | 40.0% | |
| CATCTGATGCCGAAAAAATG+TGG | - | chr4.4:11662885-11662904 | None:intergenic | 40.0% | |
| CATGTAATTCCCATGGAATC+TGG | - | chr4.4:11665442-11665461 | None:intergenic | 40.0% | |
| CCACCATATATCTGATCAAG+AGG | + | chr4.4:11664782-11664801 | MS.gene27994:CDS | 40.0% | |
| CCACTGGAAATGATGTATGT+AGG | + | chr4.4:11665754-11665773 | MS.gene27994:CDS | 40.0% | |
| CCTACATACATCATTTCCAG+TGG | - | chr4.4:11665757-11665776 | None:intergenic | 40.0% | |
| CCTCTTGATCAGATATATGG+TGG | - | chr4.4:11664785-11664804 | None:intergenic | 40.0% | |
| CGTCCTAAAGATAGACTGAT+GGG | + | chr4.4:11665365-11665384 | MS.gene27994:intron | 40.0% | |
| CTGCATCGTAACATAGTGTT+TGG | - | chr4.4:11664399-11664418 | None:intergenic | 40.0% | |
| CTTGATCAGATATATGGTGG+AGG | - | chr4.4:11664782-11664801 | None:intergenic | 40.0% | |
| GAACCATCAAACAATGGCAA+CGG | - | chr4.4:11664529-11664548 | None:intergenic | 40.0% | |
| GATCACTGCTATCAAAGCTT+AGG | - | chr4.4:11665969-11665988 | None:intergenic | 40.0% | |
| GATGAGGAAGAAACACTGTA+TGG | + | chr4.4:11664336-11664355 | MS.gene27994:intron | 40.0% | |
| GCAATCAGTAACATCCAACA+TGG | - | chr4.4:11663822-11663841 | None:intergenic | 40.0% | |
| GCCAATGATGCCGAAAATAT+GGG | - | chr4.4:11663969-11663988 | None:intergenic | 40.0% | |
| GGCAAGTATCAGGTACATTA+AGG | + | chr4.4:11664992-11665011 | MS.gene27994:CDS | 40.0% | |
| GGTTGGGCTATAATAAGTCA+AGG | + | chr4.4:11665991-11666010 | MS.gene27994:CDS | 40.0% | |
| GTACACATGATGTGGATTTG+GGG | + | chr4.4:11665089-11665108 | MS.gene27994:CDS | 40.0% | |
| GTCAAATAAGTCAGACTCGT+TGG | - | chr4.4:11663170-11663189 | None:intergenic | 40.0% | |
| GTCCTAAAGATAGACTGATG+GGG | + | chr4.4:11665366-11665385 | MS.gene27994:intron | 40.0% | |
| TCAGCACATACAATCTTGTC+TGG | - | chr4.4:11666198-11666217 | None:intergenic | 40.0% | |
| TCCTAAAGATAGACTGATGG+GGG | + | chr4.4:11665367-11665386 | MS.gene27994:intron | 40.0% | |
| TGAATGCAGTACACATGATG+TGG | + | chr4.4:11665081-11665100 | MS.gene27994:CDS | 40.0% | |
| TGATAGCAGTGATCTTGGTT+GGG | + | chr4.4:11665975-11665994 | MS.gene27994:CDS | 40.0% | |
| TGGTTCACAGCTTCGAATTT+AGG | - | chr4.4:11663788-11663807 | None:intergenic | 40.0% | |
| TTCTATGCTAACCCTTTGCT+TGG | - | chr4.4:11664554-11664573 | None:intergenic | 40.0% | |
| TTCTTCAATTGGAGCATGAG+TGG | - | chr4.4:11662935-11662954 | None:intergenic | 40.0% | |
| TTGTATGGAGGGGATGATAT+GGG | + | chr4.4:11665676-11665695 | MS.gene27994:CDS | 40.0% | |
| ! | AAAAGCTTTGATTCGCTGCA+AGG | + | chr4.4:11664498-11664517 | MS.gene27994:CDS | 40.0% |
| ! | AGCTTTGATAGCAGTGATCT+TGG | + | chr4.4:11665970-11665989 | MS.gene27994:CDS | 40.0% |
| ! | ATGCAACCGATTTAGCAAGA+CGG | - | chr4.4:11663718-11663737 | None:intergenic | 40.0% |
| ! | CACAAGTGCTGCAAAATCAA+TGG | + | chr4.4:11665714-11665733 | MS.gene27994:CDS | 40.0% |
| ! | CCATCAGTCTATCTTTAGGA+CGG | - | chr4.4:11665367-11665386 | None:intergenic | 40.0% |
| ! | GCATGTGCATCCCATATTTT+CGG | + | chr4.4:11663956-11663975 | MS.gene27994:CDS | 40.0% |
| ! | TAAAGGAGTTTTGCCTGCAA+TGG | + | chr4.4:11666098-11666117 | MS.gene27994:CDS | 40.0% |
| ! | TCATGGTCAATGTACTGATC+AGG | - | chr4.4:11663866-11663885 | None:intergenic | 40.0% |
| ! | TCCCATATTTTCGGCATCAT+TGG | + | chr4.4:11663965-11663984 | MS.gene27994:CDS | 40.0% |
| ! | TGATGGTTCTACCAAGCAAA+GGG | + | chr4.4:11664540-11664559 | MS.gene27994:CDS | 40.0% |
| ! | TGTAGAACTTTTCCATTGGC+TGG | - | chr4.4:11666227-11666246 | None:intergenic | 40.0% |
| ! | TTGATAGCAGTGATCTTGGT+TGG | + | chr4.4:11665974-11665993 | MS.gene27994:CDS | 40.0% |
| ! | TTGATGGTTCTACCAAGCAA+AGG | + | chr4.4:11664539-11664558 | MS.gene27994:CDS | 40.0% |
| !! | TAATTTGGTTCTTCTGGGTG+AGG | + | chr4.4:11665863-11665882 | MS.gene27994:CDS | 40.0% |
| !! | TATTTTCGGCATCATTGGCT+TGG | + | chr4.4:11663970-11663989 | MS.gene27994:CDS | 40.0% |
| !!! | AGCTATGCGCCACATTTTTT+CGG | + | chr4.4:11662873-11662892 | MS.gene27994:CDS | 40.0% |
| !!! | ATTTTCGGCATCATTGGCTT+GGG | + | chr4.4:11663971-11663990 | MS.gene27994:CDS | 40.0% |
| !!! | TTTTGGGATCCAGATTCCAT+GGG | + | chr4.4:11665430-11665449 | MS.gene27994:intron | 40.0% |
| AAAGCCAATGCTTGTGGTGT+TGG | + | chr4.4:11665034-11665053 | MS.gene27994:CDS | 45.0% | |
| AACATGGGGACTTGCACTAT+TGG | + | chr4.4:11665166-11665185 | MS.gene27994:CDS | 45.0% | |
| AAGCTATTCATGGGATGCCA+AGG | + | chr4.4:11663619-11663638 | MS.gene27994:CDS | 45.0% | |
| ACACCTCAATGCTAACCTGA+AGG | - | chr4.4:11664725-11664744 | None:intergenic | 45.0% | |
| AGCTGTGAACCATCTTCTCA+AGG | + | chr4.4:11663796-11663815 | MS.gene27994:CDS | 45.0% | |
| AGGCACAGTAAGAATGACAC+AGG | + | chr4.4:11666011-11666030 | MS.gene27994:CDS | 45.0% | |
| CAACACAAAGCCAATGCTTG+TGG | + | chr4.4:11665028-11665047 | MS.gene27994:CDS | 45.0% | |
| CACCAACCGTCTTGCTAAAT+CGG | + | chr4.4:11663709-11663728 | MS.gene27994:CDS | 45.0% | |
| CAGAAGCTAGACAGCATGAA+TGG | + | chr4.4:11664153-11664172 | MS.gene27994:CDS | 45.0% | |
| CCGTCCTAAAGATAGACTGA+TGG | + | chr4.4:11665364-11665383 | MS.gene27994:intron | 45.0% | |
| CCTGGTGAGATGTCTCAAAA+AGG | - | chr4.4:11664462-11664481 | None:intergenic | 45.0% | |
| CTTGTATGGAGGGGATGATA+TGG | + | chr4.4:11665675-11665694 | MS.gene27994:CDS | 45.0% | |
| GACATCAACACCAGAGACAT+GGG | + | chr4.4:11664113-11664132 | MS.gene27994:CDS | 45.0% | |
| GACTGCAATCAATGATGCCA+TGG | + | chr4.4:11664937-11664956 | MS.gene27994:CDS | 45.0% | |
| GATCCGTTGCCATTGTTTGA+TGG | + | chr4.4:11664523-11664542 | MS.gene27994:CDS | 45.0% | |
| GCCATCTGTCGTCAACATTT+AGG | + | chr4.4:11664195-11664214 | MS.gene27994:CDS | 45.0% | |
| GGAATTGTTCCATCAACTCC+TGG | - | chr4.4:11666177-11666196 | None:intergenic | 45.0% | |
| GGCACAGTAAGAATGACACA+GGG | + | chr4.4:11666012-11666031 | MS.gene27994:CDS | 45.0% | |
| GGGTCATAAACTGAGTACCA+TGG | - | chr4.4:11664957-11664976 | None:intergenic | 45.0% | |
| GTAAGAATGACACAGGGCAA+AGG | + | chr4.4:11666018-11666037 | MS.gene27994:CDS | 45.0% | |
| TATGTAGGGAAAAGCAACCC+AGG | + | chr4.4:11665769-11665788 | MS.gene27994:CDS | 45.0% | |
| TCAGGTACATTAAGGAGGTG+TGG | + | chr4.4:11665000-11665019 | MS.gene27994:CDS | 45.0% | |
| TCCAAGTATTCCTATGGCTG+TGG | - | chr4.4:11663591-11663610 | None:intergenic | 45.0% | |
| TCCACTCATCCAACTCATCA+AGG | - | chr4.4:11666062-11666081 | None:intergenic | 45.0% | |
| TCCCCCATCAGTCTATCTTT+AGG | - | chr4.4:11665371-11665390 | None:intergenic | 45.0% | |
| TCCTCCCTTAAGCTAGAGAA+AGG | - | chr4.4:11665128-11665147 | None:intergenic | 45.0% | |
| TCGCCGACCCAACAATAATT+TGG | + | chr4.4:11665848-11665867 | MS.gene27994:CDS | 45.0% | |
| TCTCATCCCTGACATCATTC+AGG | + | chr4.4:11663014-11663033 | MS.gene27994:CDS | 45.0% | |
| TGACATCAACACCAGAGACA+TGG | + | chr4.4:11664112-11664131 | MS.gene27994:CDS | 45.0% | |
| TGCTAATGCTATCACCACCT+TGG | - | chr4.4:11663639-11663658 | None:intergenic | 45.0% | |
| ! | AACCGATTTAGCAAGACGGT+TGG | - | chr4.4:11663714-11663733 | None:intergenic | 45.0% |
| ! | GATGAGTTGGATGAGTGGAA+GGG | + | chr4.4:11666063-11666082 | MS.gene27994:CDS | 45.0% |
| ! | GTCTAGCTTCTGAGTCAAAC+TGG | - | chr4.4:11664145-11664164 | None:intergenic | 45.0% |
| ! | TCAACGTTTCAGGTGCTTCA+TGG | - | chr4.4:11663883-11663902 | None:intergenic | 45.0% |
| ! | TCATTGTTTCAGGTAACGGC+AGG | + | chr4.4:11665640-11665659 | MS.gene27994:intron | 45.0% |
| ! | TCCTTTCTCTAGCTTAAGGG+AGG | + | chr4.4:11665124-11665143 | MS.gene27994:CDS | 45.0% |
| ! | TCTTGCAAGTGTATGATGGG+TGG | + | chr4.4:11663551-11663570 | MS.gene27994:CDS | 45.0% |
| ! | TGATGAGTTGGATGAGTGGA+AGG | + | chr4.4:11666062-11666081 | MS.gene27994:CDS | 45.0% |
| !! | AGATGGCGAGCTGATTTTGA+AGG | - | chr4.4:11664182-11664201 | None:intergenic | 45.0% |
| !! | AGGTTAGCATTGAGGTGTTG+AGG | + | chr4.4:11664727-11664746 | MS.gene27994:intron | 45.0% |
| !! | AGTCTATCTTTAGGACGGTG+AGG | - | chr4.4:11665362-11665381 | None:intergenic | 45.0% |
| !! | CTTGCAAGTGTATGATGGGT+GGG | + | chr4.4:11663552-11663571 | MS.gene27994:CDS | 45.0% |
| !! | GGTGCAAATGGGTGTCATTA+AGG | + | chr4.4:11663138-11663157 | MS.gene27994:CDS | 45.0% |
| !! | TTGCAAGTGTATGATGGGTG+GGG | + | chr4.4:11663553-11663572 | MS.gene27994:CDS | 45.0% |
| !!! | CCTTTTTGAGACATCTCACC+AGG | + | chr4.4:11664459-11664478 | MS.gene27994:CDS | 45.0% |
| !!! | CTTTTGGGATCCAGATTCCA+TGG | + | chr4.4:11665429-11665448 | MS.gene27994:intron | 45.0% |
| AAGCCAGAATTCCCCTAGGT+TGG | - | chr4.4:11663672-11663691 | None:intergenic | 50.0% | |
| ACAGGGAAAGCAGGTGCAAA+TGG | + | chr4.4:11663126-11663145 | MS.gene27994:intron | 50.0% | |
| AGCATTTGCAGCCAACCTAG+GGG | + | chr4.4:11663658-11663677 | MS.gene27994:CDS | 50.0% | |
| ATGGAGGGGATGATATGGGA+TGG | + | chr4.4:11665680-11665699 | MS.gene27994:CDS | 50.0% | |
| CAGCATTTGCAGCCAACCTA+GGG | + | chr4.4:11663657-11663676 | MS.gene27994:CDS | 50.0% | |
| CAGGGAAAGCAGGTGCAAAT+GGG | + | chr4.4:11663127-11663146 | MS.gene27994:intron | 50.0% | |
| CCATCTTCTCAAGGCCATGT+TGG | + | chr4.4:11663805-11663824 | MS.gene27994:CDS | 50.0% | |
| CGATTTAGCAAGACGGTTGG+TGG | - | chr4.4:11663711-11663730 | None:intergenic | 50.0% | |
| CTACAAGCCAGAATTCCCCT+AGG | - | chr4.4:11663676-11663695 | None:intergenic | 50.0% | |
| CTATTCATGGGATGCCAAGG+TGG | + | chr4.4:11663622-11663641 | MS.gene27994:CDS | 50.0% | |
| GATGTGGATTTGGGGAAGCA+TGG | + | chr4.4:11665097-11665116 | MS.gene27994:CDS | 50.0% | |
| GATTGTCCGGTCTTAATCGG+TGG | - | chr4.4:11665555-11665574 | None:intergenic | 50.0% | |
| GCATGCTGATGCATGGAGAT+GGG | - | chr4.4:11663246-11663265 | None:intergenic | 50.0% | |
| GCCACAGCCATAGGAATACT+TGG | + | chr4.4:11663587-11663606 | MS.gene27994:CDS | 50.0% | |
| GCTTAAGGGAGGAAGCTCTT+TGG | + | chr4.4:11665135-11665154 | MS.gene27994:CDS | 50.0% | |
| GGATCCAACACCACAAGCAT+TGG | - | chr4.4:11665041-11665060 | None:intergenic | 50.0% | |
| GGGATGATATGGGATGGATC+AGG | + | chr4.4:11665686-11665705 | MS.gene27994:CDS | 50.0% | |
| GTGGAAGCAGTCAACGTTTC+AGG | - | chr4.4:11663893-11663912 | None:intergenic | 50.0% | |
| TGCATGCTGATGCATGGAGA+TGG | - | chr4.4:11663247-11663266 | None:intergenic | 50.0% | |
| TGCGTCACGCAATTACTGCA+TGG | + | chr4.4:11665587-11665606 | MS.gene27994:intron | 50.0% | |
| ! | CCAACATGGCCTTGAGAAGA+TGG | - | chr4.4:11663808-11663827 | None:intergenic | 50.0% |
| ! | CTGCCTTCAGGTTAGCATTG+AGG | + | chr4.4:11664719-11664738 | MS.gene27994:intron | 50.0% |
| ! | CTTGTGGTGTTGGATCCACA+GGG | + | chr4.4:11665044-11665063 | MS.gene27994:CDS | 50.0% |
| ! | GAGGCTCCCTTTTCCACAAT+TGG | - | chr4.4:11664888-11664907 | None:intergenic | 50.0% |
| ! | GCCTTGATGAGTTGGATGAG+TGG | + | chr4.4:11666058-11666077 | MS.gene27994:CDS | 50.0% |
| ! | GCTCTAGATTGGTTCTTCCG+TGG | - | chr4.4:11662856-11662875 | None:intergenic | 50.0% |
| ! | TCTTGGCCACCGATTAAGAC+CGG | + | chr4.4:11665546-11665565 | MS.gene27994:intron | 50.0% |
| ! | TTGTGGTGTTGGATCCACAG+GGG | + | chr4.4:11665045-11665064 | MS.gene27994:CDS | 50.0% |
| !! | GCATCATTGGCTTGGGTCAA+GGG | + | chr4.4:11663978-11663997 | MS.gene27994:CDS | 50.0% |
| !! | TGCAAGTGTATGATGGGTGG+GGG | + | chr4.4:11663554-11663573 | MS.gene27994:CDS | 50.0% |
| !! | TGTGGCGCATAGCTCTAGAT+TGG | - | chr4.4:11662867-11662886 | None:intergenic | 50.0% |
| !!! | CTGTTTTGTTTCGGTCCACG+AGG | - | chr4.4:11664907-11664926 | None:intergenic | 50.0% |
| AGGTTCACAACCTTCCCCTG+TGG | - | chr4.4:11665062-11665081 | None:intergenic | 55.0% | |
| CAATTGGAGCATGAGTGGCG+CGG | - | chr4.4:11662930-11662949 | None:intergenic | 55.0% | |
| CAGCCAACCTAGGGGAATTC+TGG | + | chr4.4:11663666-11663685 | MS.gene27994:CDS | 55.0% | |
| CAGGGATGAGAGAAGCTGCA+TGG | - | chr4.4:11663005-11663024 | None:intergenic | 55.0% | |
| CTGGAAAGCTCCCATGTCTC+TGG | - | chr4.4:11664126-11664145 | None:intergenic | 55.0% | |
| GATGCTCATGCCACAGCCAT+AGG | + | chr4.4:11663578-11663597 | MS.gene27994:CDS | 55.0% | |
| GCAGCATTTGCAGCCAACCT+AGG | + | chr4.4:11663656-11663675 | MS.gene27994:CDS | 55.0% | |
| GCTGATGCATGGAGATGGGA+GGG | - | chr4.4:11663242-11663261 | None:intergenic | 55.0% | |
| TGCTGATGCATGGAGATGGG+AGG | - | chr4.4:11663243-11663262 | None:intergenic | 55.0% | |
| TTGTGGAAAAGGGAGCCTCG+TGG | + | chr4.4:11664889-11664908 | MS.gene27994:CDS | 55.0% | |
| ! | GCTTGTGGTGTTGGATCCAC+AGG | + | chr4.4:11665043-11665062 | MS.gene27994:CDS | 55.0% |
| ! | GGGTGAGGCTTGAAAGCATG+TGG | + | chr4.4:11665878-11665897 | MS.gene27994:CDS | 55.0% |
| !! | GGCATCATTGGCTTGGGTCA+AGG | + | chr4.4:11663977-11663996 | MS.gene27994:CDS | 55.0% |
| !! | TGACCCTTCACTTCTGGAGC+CGG | + | chr4.4:11664971-11664990 | MS.gene27994:CDS | 55.0% |
| !! | TTCTGGAGCCGGCAAGTATC+AGG | + | chr4.4:11664982-11665001 | MS.gene27994:CDS | 55.0% |
| !! | TTGCCGGCTCCAGAAGTGAA+GGG | - | chr4.4:11664977-11664996 | None:intergenic | 55.0% |
| TGCTGAGTGTGGCCAGCCAA+TGG | + | chr4.4:11666212-11666231 | MS.gene27994:CDS | 60.0% | |
| ! | GGTGTTGGATCCACAGGGGA+AGG | + | chr4.4:11665049-11665068 | MS.gene27994:CDS | 60.0% |
| !! | CTTGCCGGCTCCAGAAGTGA+AGG | - | chr4.4:11664978-11664997 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11662841 | 11666269 | 11662841 | ID=MS.gene27994 |
| chr4.4 | mRNA | 11662841 | 11666269 | 11662841 | ID=MS.gene27994.t1;Parent=MS.gene27994 |
| chr4.4 | exon | 11662841 | 11663035 | 11662841 | ID=MS.gene27994.t1.exon1;Parent=MS.gene27994.t1 |
| chr4.4 | CDS | 11662841 | 11663035 | 11662841 | ID=cds.MS.gene27994.t1;Parent=MS.gene27994.t1 |
| chr4.4 | exon | 11663130 | 11663234 | 11663130 | ID=MS.gene27994.t1.exon2;Parent=MS.gene27994.t1 |
| chr4.4 | CDS | 11663130 | 11663234 | 11663130 | ID=cds.MS.gene27994.t1;Parent=MS.gene27994.t1 |
| chr4.4 | exon | 11663548 | 11663999 | 11663548 | ID=MS.gene27994.t1.exon3;Parent=MS.gene27994.t1 |
| chr4.4 | CDS | 11663548 | 11663999 | 11663548 | ID=cds.MS.gene27994.t1;Parent=MS.gene27994.t1 |
| chr4.4 | exon | 11664107 | 11664216 | 11664107 | ID=MS.gene27994.t1.exon4;Parent=MS.gene27994.t1 |
| chr4.4 | CDS | 11664107 | 11664216 | 11664107 | ID=cds.MS.gene27994.t1;Parent=MS.gene27994.t1 |
| chr4.4 | exon | 11664419 | 11664561 | 11664419 | ID=MS.gene27994.t1.exon5;Parent=MS.gene27994.t1 |
| chr4.4 | CDS | 11664419 | 11664561 | 11664419 | ID=cds.MS.gene27994.t1;Parent=MS.gene27994.t1 |
| chr4.4 | exon | 11664729 | 11665220 | 11664729 | ID=MS.gene27994.t1.exon6;Parent=MS.gene27994.t1 |
| chr4.4 | CDS | 11664729 | 11665220 | 11664729 | ID=cds.MS.gene27994.t1;Parent=MS.gene27994.t1 |
| chr4.4 | exon | 11665652 | 11666269 | 11665652 | ID=MS.gene27994.t1.exon7;Parent=MS.gene27994.t1 |
| chr4.4 | CDS | 11665652 | 11666269 | 11665652 | ID=cds.MS.gene27994.t1;Parent=MS.gene27994.t1 |
| Gene Sequence |
| Protein sequence |
