Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28244.t1 | XP_013459112.1 | 97 | 33 | 1 | 0 | 9 | 41 | 16 | 48 | 5.90E-07 | 64.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28244.t1 | A0A072V4P7 | 97.0 | 33 | 1 | 0 | 9 | 41 | 16 | 48 | 4.3e-07 | 64.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene28244 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene053568 | MS.gene28244 | 0.836401 | 9.56E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28244.t1 | MTR_3g026230 | 71.371 | 248 | 16 | 2 | 9 | 212 | 16 | 252 | 1.73e-87 | 258 |
| MS.gene28244.t1 | MTR_3g026160 | 74.510 | 204 | 17 | 2 | 9 | 212 | 16 | 184 | 4.39e-76 | 227 |
| MS.gene28244.t1 | MTR_3g026330 | 64.019 | 214 | 49 | 2 | 9 | 206 | 16 | 217 | 6.60e-67 | 209 |
| MS.gene28244.t1 | MTR_3g026330 | 64.851 | 202 | 42 | 5 | 30 | 212 | 153 | 344 | 1.59e-49 | 164 |
| MS.gene28244.t1 | MTR_3g026330 | 68.831 | 154 | 43 | 3 | 28 | 181 | 189 | 337 | 1.34e-39 | 139 |
| MS.gene28244.t1 | MTR_3g026330 | 61.745 | 149 | 36 | 4 | 23 | 171 | 211 | 338 | 3.89e-29 | 111 |
| MS.gene28244.t1 | MTR_3g026290 | 69.014 | 213 | 45 | 6 | 9 | 206 | 16 | 222 | 3.03e-65 | 205 |
| MS.gene28244.t1 | MTR_3g026290 | 61.244 | 209 | 51 | 3 | 33 | 212 | 153 | 360 | 6.87e-52 | 171 |
| MS.gene28244.t1 | MTR_3g026290 | 65.789 | 76 | 21 | 2 | 30 | 102 | 281 | 354 | 9.95e-12 | 63.5 |
| MS.gene28244.t1 | MTR_3g026240 | 53.261 | 92 | 38 | 2 | 9 | 100 | 16 | 102 | 4.21e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28244.t1 | AT5G09530 | 52.344 | 256 | 53 | 9 | 19 | 205 | 30 | 285 | 2.19e-44 | 152 |
| MS.gene28244.t1 | AT5G09530 | 51.429 | 245 | 48 | 6 | 28 | 205 | 100 | 340 | 3.54e-42 | 146 |
| MS.gene28244.t1 | AT5G09530 | 60.606 | 198 | 58 | 7 | 25 | 208 | 179 | 370 | 3.14e-41 | 144 |
| MS.gene28244.t1 | AT5G09520 | 49.600 | 125 | 42 | 2 | 9 | 133 | 18 | 121 | 7.21e-22 | 87.4 |
| MS.gene28244.t1 | AT5G09520 | 53.922 | 102 | 35 | 3 | 103 | 204 | 41 | 130 | 4.52e-16 | 72.0 |
| MS.gene28244.t1 | AT5G09520 | 70.690 | 58 | 15 | 1 | 148 | 205 | 40 | 95 | 2.48e-13 | 64.7 |
| MS.gene28244.t1 | AT5G09520 | 54.667 | 75 | 30 | 1 | 142 | 212 | 45 | 119 | 4.07e-11 | 58.9 |
Find 78 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGTACCTTTGGTATTTC+TGG | 0.080700 | 3.3:-18058016 | None:intergenic |
| TCGGGTATCTTTGGAATTTC+TGG | 0.088558 | 3.3:-18057911 | None:intergenic |
| AGCTCAGGTTTGGGCAATTC+AGG | 0.197717 | 3.3:-18057863 | None:intergenic |
| GGAACACCTTTAGGAGTTTC+AGG | 0.209885 | 3.3:-18058139 | None:intergenic |
| TCAGGTACCTTAGGCAATTC+TGG | 0.231204 | 3.3:-18057704 | None:intergenic |
| TCAGGTACCTTAGGTAATTC+TGG | 0.242157 | 3.3:-18057737 | None:intergenic |
| TTAGGAGTTTCAGGGAATTT+AGG | 0.242346 | 3.3:-18058130 | None:intergenic |
| AACTCTAGCTTTGGTAATTC+AGG | 0.247874 | 3.3:-18058034 | None:intergenic |
| ACCTTTGGTATTTCTGGTTT+GGG | 0.248136 | 3.3:-18058010 | None:intergenic |
| TTCAGGGAATTTAGGTAATT+CGG | 0.264191 | 3.3:-18058122 | None:intergenic |
| AATTCTGGCTTTGGCAATTC+AGG | 0.265103 | 3.3:-18057722 | None:intergenic |
| GACTTTAGGTAGCTCAGGTT+TGG | 0.265600 | 3.3:-18057873 | None:intergenic |
| TTTGGCAATTCGGGTATCTT+TGG | 0.268546 | 3.3:-18057920 | None:intergenic |
| TACCTTTGGTATTTCTGGTT+TGG | 0.269930 | 3.3:-18058011 | None:intergenic |
| TTGGGCAACTCAGGGACTTT+TGG | 0.292556 | 3.3:-18057992 | None:intergenic |
| TCAAATTTCAATGCAGATAT+AGG | 0.293534 | 3.3:+18057205 | MS.gene28244:CDS |
| TTAGGTAATTCAGGAATCTT+AGG | 0.302765 | 3.3:-18057680 | None:intergenic |
| ATAGACAATTCGGGGACTTT+AGG | 0.311738 | 3.3:-18057887 | None:intergenic |
| AGCTCAGGCTTTGGAAGTTC+AGG | 0.319717 | 3.3:-18057755 | None:intergenic |
| TTAGGCAACTCGGGAACTTT+AGG | 0.329308 | 3.3:-18057836 | None:intergenic |
| AATTTAGGTAATTCGGGTTT+TGG | 0.331302 | 3.3:-18058115 | None:intergenic |
| AAGTCGGACTTTGGCAATTC+GGG | 0.342416 | 3.3:-18057929 | None:intergenic |
| ATAGGTGGAAAATCAAGTTT+TGG | 0.353325 | 3.3:-18057641 | None:intergenic |
| ACTTTGGGAAACTCGGGTTT+TGG | 0.357337 | 3.3:-18057803 | None:intergenic |
| TTAGGCAACTCAGGAACTTT+GGG | 0.358876 | 3.3:-18057818 | None:intergenic |
| GTATTGGTTGGAACACCTTT+AGG | 0.359842 | 3.3:-18058148 | None:intergenic |
| ACTTTAGGTAGCTCAGGTTT+GGG | 0.365399 | 3.3:-18057872 | None:intergenic |
| AATTTCTGGCATAGACAATT+CGG | 0.365865 | 3.3:-18057897 | None:intergenic |
| AGTTCAGGCTTTGTCAATTC+GGG | 0.366442 | 3.3:-18058067 | None:intergenic |
| ACCTTAGGTAATTCTGGCTT+TGG | 0.366886 | 3.3:-18057731 | None:intergenic |
| TCAGGGAATTTAGGTAATTC+GGG | 0.369791 | 3.3:-18058121 | None:intergenic |
| ACATTAACTTTAGGTAGTTC+AGG | 0.370017 | 3.3:-18058082 | None:intergenic |
| TTTGTCAATTCGGGTATCTT+AGG | 0.371332 | 3.3:-18058058 | None:intergenic |
| TAGTTCAGGCTTTGTCAATT+CGG | 0.374450 | 3.3:-18058068 | None:intergenic |
| GGAAGCTCAGGCTTTGGTAT+AGG | 0.376080 | 3.3:-18057659 | None:intergenic |
| AATTCTGGCTTAGGTAATTC+AGG | 0.380278 | 3.3:-18057689 | None:intergenic |
| TAAGTCGGACTTTGGCAATT+CGG | 0.380730 | 3.3:-18057930 | None:intergenic |
| AGTTCAGGGACATTAACTTT+AGG | 0.387475 | 3.3:-18058091 | None:intergenic |
| CTCAGGAACTTTGGGAAACT+CGG | 0.389158 | 3.3:-18057810 | None:intergenic |
| TTTAGGCAACTCAGGAACTT+TGG | 0.393082 | 3.3:-18057819 | None:intergenic |
| ATCTTAGGAAGCTCAGGCTT+TGG | 0.394512 | 3.3:-18057665 | None:intergenic |
| ATTTCTGGCATAGACAATTC+GGG | 0.397522 | 3.3:-18057896 | None:intergenic |
| ATTTCTGGTTTGGGCAACTC+AGG | 0.399272 | 3.3:-18058001 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+TGG | 0.399783 | 3.3:-18058025 | None:intergenic |
| AACTTAGGTAGCTCAGGCTT+TGG | 0.406351 | 3.3:-18057764 | None:intergenic |
| TTTGGAAGTTCAGGTACCTT+AGG | 0.422522 | 3.3:-18057746 | None:intergenic |
| ATCTTAGGTAACTCTAGCTT+TGG | 0.432161 | 3.3:-18058043 | None:intergenic |
| AGTTCCAACTTAAGGAGTAT+TGG | 0.438613 | 3.3:-18058164 | None:intergenic |
| AGAGTATTACAATGGTTGTC+GGG | 0.440611 | 3.3:+18057582 | MS.gene28244:CDS |
| TTTGGCAATTCAGGTACCTT+AGG | 0.442441 | 3.3:-18057713 | None:intergenic |
| TCAGGAATCTTAGGAAGCTC+AGG | 0.453881 | 3.3:-18057671 | None:intergenic |
| GGCATTAAATTTAGTTAAGT+CGG | 0.458589 | 3.3:-18057945 | None:intergenic |
| AATTTAGTTAAGTCGGACTT+TGG | 0.463084 | 3.3:-18057938 | None:intergenic |
| ACCTTAGGCAATTCTGGCTT+AGG | 0.463421 | 3.3:-18057698 | None:intergenic |
| ACATTAAACTTAGGTAGCTC+AGG | 0.466667 | 3.3:-18057770 | None:intergenic |
| TCGGGGACTTTAGGTAGCTC+AGG | 0.467048 | 3.3:-18057878 | None:intergenic |
| TTGGGCAATTCAGGGAACTT+AGG | 0.475381 | 3.3:-18057854 | None:intergenic |
| GACAACCATTGTAATACTCT+TGG | 0.489157 | 3.3:-18057579 | None:intergenic |
| AATTCAGGAACATTAAACTT+AGG | 0.490699 | 3.3:-18057779 | None:intergenic |
| TTCAGGGAACTTAGGCAACT+CGG | 0.499436 | 3.3:-18057846 | None:intergenic |
| GAACACCTTTAGGAGTTTCA+GGG | 0.502997 | 3.3:-18058138 | None:intergenic |
| AACCATTGTAATACTCTTGG+CGG | 0.510875 | 3.3:-18057576 | None:intergenic |
| GCTCAGGTTTGGGCAATTCA+GGG | 0.523757 | 3.3:-18057862 | None:intergenic |
| CCAACTTAAGGAGTATTGGT+TGG | 0.525013 | 3.3:-18058160 | None:intergenic |
| AAGAGTATTACAATGGTTGT+CGG | 0.526376 | 3.3:+18057581 | MS.gene28244:CDS |
| TCAGGAACTTTGGGAAACTC+GGG | 0.528389 | 3.3:-18057809 | None:intergenic |
| TTTCTGGTTTGGGCAACTCA+GGG | 0.529305 | 3.3:-18058000 | None:intergenic |
| AGCTCAGGCTTTGGTATAGG+TGG | 0.530445 | 3.3:-18057656 | None:intergenic |
| TCGGGAACTTTAGGCAACTC+AGG | 0.569614 | 3.3:-18057827 | None:intergenic |
| AAATTCCCTGAAACTCCTAA+AGG | 0.572859 | 3.3:+18058133 | MS.gene28244:CDS |
| TCAGGGAACTTAGGCAACTC+GGG | 0.582113 | 3.3:-18057845 | None:intergenic |
| GCCAAAGCCAGAATTACCTA+AGG | 0.599842 | 3.3:+18057730 | MS.gene28244:CDS |
| ACCTAAGCCAGAATTGCCTA+AGG | 0.603337 | 3.3:+18057697 | MS.gene28244:CDS |
| TTTCTGGCATAGACAATTCG+GGG | 0.611978 | 3.3:-18057895 | None:intergenic |
| GAGTATTACAATGGTTGTCG+GGG | 0.633099 | 3.3:+18057583 | MS.gene28244:CDS |
| ATCCGCCAAGAGTATTACAA+TGG | 0.672419 | 3.3:+18057574 | MS.gene28244:CDS |
| GCCCAAACCAGAAATACCAA+AGG | 0.685777 | 3.3:+18058009 | MS.gene28244:CDS |
| TCTAGAGTCGAACATACCTG+AGG | 0.701502 | 3.3:+18057616 | MS.gene28244:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATGGAAAAATAATTTT+TGG | - | chr3.3:18057539-18057558 | None:intergenic | 10.0% |
| !! | AAAAAATAGAACGTTATTGT+TGG | - | chr3.3:18057239-18057258 | None:intergenic | 20.0% |
| !!! | CTAATTAAATTTTGTTTTGC+TGG | + | chr3.3:18057284-18057303 | MS.gene28244:intron | 20.0% |
| ! | AACTAAAAAATGTGTAAGCA+AGG | - | chr3.3:18057372-18057391 | None:intergenic | 25.0% |
| ! | AATTCAGGAACATTAAACTT+AGG | - | chr3.3:18057782-18057801 | None:intergenic | 25.0% |
| ! | ACTAAAAAATGTGTAAGCAA+GGG | - | chr3.3:18057371-18057390 | None:intergenic | 25.0% |
| ! | AGTATAGCTAGAATCATTAA+TGG | - | chr3.3:18057554-18057573 | None:intergenic | 25.0% |
| ! | GGCATTAAATTTAGTTAAGT+CGG | - | chr3.3:18057948-18057967 | None:intergenic | 25.0% |
| ! | TCAAATTTCAATGCAGATAT+AGG | + | chr3.3:18057205-18057224 | MS.gene28244:CDS | 25.0% |
| AATTTAGTTAAGTCGGACTT+TGG | - | chr3.3:18057941-18057960 | None:intergenic | 30.0% | |
| ACATTAACTTTAGGTAGTTC+AGG | - | chr3.3:18058085-18058104 | None:intergenic | 30.0% | |
| TGCAGGAAGATATATTATAG+TGG | - | chr3.3:18057489-18057508 | None:intergenic | 30.0% | |
| TTAGGTAATTCAGGAATCTT+AGG | - | chr3.3:18057683-18057702 | None:intergenic | 30.0% | |
| TTCAGGGAATTTAGGTAATT+CGG | - | chr3.3:18058125-18058144 | None:intergenic | 30.0% | |
| ! | ATAGGTGGAAAATCAAGTTT+TGG | - | chr3.3:18057644-18057663 | None:intergenic | 30.0% |
| !! | AAGAGTATTACAATGGTTGT+CGG | + | chr3.3:18057581-18057600 | MS.gene28244:CDS | 30.0% |
| !! | AATTTAGGTAATTCGGGTTT+TGG | - | chr3.3:18058118-18058137 | None:intergenic | 30.0% |
| !! | AATTTCTGGCATAGACAATT+CGG | - | chr3.3:18057900-18057919 | None:intergenic | 30.0% |
| AAATTCCCTGAAACTCCTAA+AGG | + | chr3.3:18058133-18058152 | MS.gene28244:CDS | 35.0% | |
| AACCATTGTAATACTCTTGG+CGG | - | chr3.3:18057579-18057598 | None:intergenic | 35.0% | |
| ACATTAAACTTAGGTAGCTC+AGG | - | chr3.3:18057773-18057792 | None:intergenic | 35.0% | |
| AGTTCAGGGACATTAACTTT+AGG | - | chr3.3:18058094-18058113 | None:intergenic | 35.0% | |
| GACAACCATTGTAATACTCT+TGG | - | chr3.3:18057582-18057601 | None:intergenic | 35.0% | |
| TCAGGGAATTTAGGTAATTC+GGG | - | chr3.3:18058124-18058143 | None:intergenic | 35.0% | |
| TTAGGAGTTTCAGGGAATTT+AGG | - | chr3.3:18058133-18058152 | None:intergenic | 35.0% | |
| TTTGTCAATTCGGGTATCTT+AGG | - | chr3.3:18058061-18058080 | None:intergenic | 35.0% | |
| ! | AGAGTATTACAATGGTTGTC+GGG | + | chr3.3:18057582-18057601 | MS.gene28244:CDS | 35.0% |
| ! | ATCTTAGGTAACTCTAGCTT+TGG | - | chr3.3:18058046-18058065 | None:intergenic | 35.0% |
| ! | TAGTTCAGGCTTTGTCAATT+CGG | - | chr3.3:18058071-18058090 | None:intergenic | 35.0% |
| ! | TGTTTTGCTGGACAATGTAT+AGG | + | chr3.3:18057296-18057315 | MS.gene28244:intron | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | - | chr3.3:18058028-18058047 | None:intergenic | 35.0% |
| !! | AACTCTAGCTTTGGTAATTC+AGG | - | chr3.3:18058037-18058056 | None:intergenic | 35.0% |
| !! | AATTCTGGCTTAGGTAATTC+AGG | - | chr3.3:18057692-18057711 | None:intergenic | 35.0% |
| !! | ACCTTTGGTATTTCTGGTTT+GGG | - | chr3.3:18058013-18058032 | None:intergenic | 35.0% |
| !! | ATTTCTGGCATAGACAATTC+GGG | - | chr3.3:18057899-18057918 | None:intergenic | 35.0% |
| !! | TACCTTTGGTATTTCTGGTT+TGG | - | chr3.3:18058014-18058033 | None:intergenic | 35.0% |
| !!! | AAATCAAGTTTTGGAACCTC+AGG | - | chr3.3:18057635-18057654 | None:intergenic | 35.0% |
| ACTTTAGGTAGCTCAGGTTT+GGG | - | chr3.3:18057875-18057894 | None:intergenic | 40.0% | |
| ATAGACAATTCGGGGACTTT+AGG | - | chr3.3:18057890-18057909 | None:intergenic | 40.0% | |
| GAGTATTACAATGGTTGTCG+GGG | + | chr3.3:18057583-18057602 | MS.gene28244:CDS | 40.0% | |
| TAAGTCGGACTTTGGCAATT+CGG | - | chr3.3:18057933-18057952 | None:intergenic | 40.0% | |
| TCAGGTACCTTAGGTAATTC+TGG | - | chr3.3:18057740-18057759 | None:intergenic | 40.0% | |
| TCAGGTACCTTTGGTATTTC+TGG | - | chr3.3:18058019-18058038 | None:intergenic | 40.0% | |
| TTAGGCAACTCAGGAACTTT+GGG | - | chr3.3:18057821-18057840 | None:intergenic | 40.0% | |
| TTTAGGCAACTCAGGAACTT+TGG | - | chr3.3:18057822-18057841 | None:intergenic | 40.0% | |
| TTTGGAAGTTCAGGTACCTT+AGG | - | chr3.3:18057749-18057768 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGTACCTT+AGG | - | chr3.3:18057716-18057735 | None:intergenic | 40.0% | |
| TTTGGCAATTCGGGTATCTT+TGG | - | chr3.3:18057923-18057942 | None:intergenic | 40.0% | |
| ! | AGTTCAGGCTTTGTCAATTC+GGG | - | chr3.3:18058070-18058089 | None:intergenic | 40.0% |
| ! | GAACACCTTTAGGAGTTTCA+GGG | - | chr3.3:18058141-18058160 | None:intergenic | 40.0% |
| ! | TTTCTGGCATAGACAATTCG+GGG | - | chr3.3:18057898-18057917 | None:intergenic | 40.0% |
| !! | AATTCTGGCTTTGGCAATTC+AGG | - | chr3.3:18057725-18057744 | None:intergenic | 40.0% |
| !! | ACCTTAGGTAATTCTGGCTT+TGG | - | chr3.3:18057734-18057753 | None:intergenic | 40.0% |
| !! | ATCCGCCAAGAGTATTACAA+TGG | + | chr3.3:18057574-18057593 | MS.gene28244:CDS | 40.0% |
| !! | GTATTGGTTGGAACACCTTT+AGG | - | chr3.3:18058151-18058170 | None:intergenic | 40.0% |
| !! | TCGGGTATCTTTGGAATTTC+TGG | - | chr3.3:18057914-18057933 | None:intergenic | 40.0% |
| AACTTAGGTAGCTCAGGCTT+TGG | - | chr3.3:18057767-18057786 | None:intergenic | 45.0% | |
| AAGTCGGACTTTGGCAATTC+GGG | - | chr3.3:18057932-18057951 | None:intergenic | 45.0% | |
| ACCTAAGCCAGAATTGCCTA+AGG | + | chr3.3:18057697-18057716 | MS.gene28244:CDS | 45.0% | |
| ATCTTAGGAAGCTCAGGCTT+TGG | - | chr3.3:18057668-18057687 | None:intergenic | 45.0% | |
| ATGTGTAAGCAAGGGTGAGT+TGG | - | chr3.3:18057363-18057382 | None:intergenic | 45.0% | |
| GACTTTAGGTAGCTCAGGTT+TGG | - | chr3.3:18057876-18057895 | None:intergenic | 45.0% | |
| GCCAAAGCCAGAATTACCTA+AGG | + | chr3.3:18057730-18057749 | MS.gene28244:CDS | 45.0% | |
| GCCCAAACCAGAAATACCAA+AGG | + | chr3.3:18058009-18058028 | MS.gene28244:CDS | 45.0% | |
| TAAGCCATGAGAAAAGCTGC+AGG | - | chr3.3:18057506-18057525 | None:intergenic | 45.0% | |
| TCAGGAATCTTAGGAAGCTC+AGG | - | chr3.3:18057674-18057693 | None:intergenic | 45.0% | |
| TCAGGTACCTTAGGCAATTC+TGG | - | chr3.3:18057707-18057726 | None:intergenic | 45.0% | |
| TTAGGCAACTCGGGAACTTT+AGG | - | chr3.3:18057839-18057858 | None:intergenic | 45.0% | |
| TTCAGGGAACTTAGGCAACT+CGG | - | chr3.3:18057849-18057868 | None:intergenic | 45.0% | |
| TTGGGCAATTCAGGGAACTT+AGG | - | chr3.3:18057857-18057876 | None:intergenic | 45.0% | |
| ! | CTCAGGAACTTTGGGAAACT+CGG | - | chr3.3:18057813-18057832 | None:intergenic | 45.0% |
| ! | GGAACACCTTTAGGAGTTTC+AGG | - | chr3.3:18058142-18058161 | None:intergenic | 45.0% |
| ! | TCAGGAACTTTGGGAAACTC+GGG | - | chr3.3:18057812-18057831 | None:intergenic | 45.0% |
| ! | TCTAGAGTCGAACATACCTG+AGG | + | chr3.3:18057616-18057635 | MS.gene28244:CDS | 45.0% |
| ! | TCTTCCTGCAGCTTTTCTCA+TGG | + | chr3.3:18057499-18057518 | MS.gene28244:intron | 45.0% |
| !! | AACTCGGGTTTTGGCAATTC+AGG | - | chr3.3:18057797-18057816 | None:intergenic | 45.0% |
| !! | AATTCGGGTTTTGGCAGTTC+AGG | - | chr3.3:18058109-18058128 | None:intergenic | 45.0% |
| !! | ACCTTAGGCAATTCTGGCTT+AGG | - | chr3.3:18057701-18057720 | None:intergenic | 45.0% |
| !! | ACTTTGGGAAACTCGGGTTT+TGG | - | chr3.3:18057806-18057825 | None:intergenic | 45.0% |
| !! | ATTCGGGTTTTGGCAGTTCA+GGG | - | chr3.3:18058108-18058127 | None:intergenic | 45.0% |
| !! | ATTTCTGGTTTGGGCAACTC+AGG | - | chr3.3:18058004-18058023 | None:intergenic | 45.0% |
| !! | TTTCTGGTTTGGGCAACTCA+GGG | - | chr3.3:18058003-18058022 | None:intergenic | 45.0% |
| AGCTCAGGTTTGGGCAATTC+AGG | - | chr3.3:18057866-18057885 | None:intergenic | 50.0% | |
| GCTCAGGTTTGGGCAATTCA+GGG | - | chr3.3:18057865-18057884 | None:intergenic | 50.0% | |
| TCAGGGAACTTAGGCAACTC+GGG | - | chr3.3:18057848-18057867 | None:intergenic | 50.0% | |
| TCGGGAACTTTAGGCAACTC+AGG | - | chr3.3:18057830-18057849 | None:intergenic | 50.0% | |
| ! | AGCTCAGGCTTTGGTATAGG+TGG | - | chr3.3:18057659-18057678 | None:intergenic | 50.0% |
| ! | AGCTCGGGTTTTCGCAATTC+AGG | - | chr3.3:18057971-18057990 | None:intergenic | 50.0% |
| ! | CTCGGGTTTTCGCAATTCAG+GGG | - | chr3.3:18057969-18057988 | None:intergenic | 50.0% |
| ! | GCTCGGGTTTTCGCAATTCA+GGG | - | chr3.3:18057970-18057989 | None:intergenic | 50.0% |
| ! | GGAAGCTCAGGCTTTGGTAT+AGG | - | chr3.3:18057662-18057681 | None:intergenic | 50.0% |
| ! | TTGGGCAACTCAGGGACTTT+TGG | - | chr3.3:18057995-18058014 | None:intergenic | 50.0% |
| !! | AGCTCAGGCTTTGGAAGTTC+AGG | - | chr3.3:18057758-18057777 | None:intergenic | 50.0% |
| !! | CTCAGGGACTTTTGGTAGCT+CGG | - | chr3.3:18057987-18058006 | None:intergenic | 50.0% |
| !! | TCAGGGACTTTTGGTAGCTC+GGG | - | chr3.3:18057986-18058005 | None:intergenic | 50.0% |
| TCGGGGACTTTAGGTAGCTC+AGG | - | chr3.3:18057881-18057900 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 18057199 | 18058177 | 18057199 | ID=MS.gene28244 |
| chr3.3 | mRNA | 18057199 | 18058177 | 18057199 | ID=MS.gene28244.t1;Parent=MS.gene28244 |
| chr3.3 | exon | 18057199 | 18057226 | 18057199 | ID=MS.gene28244.t1.exon1;Parent=MS.gene28244.t1 |
| chr3.3 | CDS | 18057199 | 18057226 | 18057199 | ID=cds.MS.gene28244.t1;Parent=MS.gene28244.t1 |
| chr3.3 | exon | 18057567 | 18058177 | 18057567 | ID=MS.gene28244.t1.exon2;Parent=MS.gene28244.t1 |
| chr3.3 | CDS | 18057567 | 18058177 | 18057567 | ID=cds.MS.gene28244.t1;Parent=MS.gene28244.t1 |
| Gene Sequence |
| Protein sequence |
