Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28317.t1 | XP_003606829.2 | 97.8 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 1.30E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28317.t1 | O22870 | 68.1 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 1.9e-76 | 287.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28317.t1 | G7JEW8 | 97.8 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 9.6e-122 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056405 | MS.gene28317 | 0.971596 | 2.06E-133 | -1.69E-46 |
| MS.gene056607 | MS.gene28317 | 0.971974 | 5.15E-134 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28317.t1 | MTR_4g068190 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 7.86e-165 | 454 |
| MS.gene28317.t1 | MTR_8g091410 | 27.568 | 185 | 117 | 4 | 41 | 218 | 29 | 203 | 1.46e-17 | 78.6 |
| MS.gene28317.t1 | MTR_4g094785 | 33.918 | 171 | 92 | 5 | 55 | 218 | 80 | 236 | 4.08e-16 | 75.1 |
| MS.gene28317.t1 | MTR_8g080980 | 40.367 | 109 | 60 | 3 | 111 | 218 | 36 | 140 | 4.85e-16 | 77.0 |
| MS.gene28317.t1 | MTR_8g006755 | 40.449 | 89 | 53 | 0 | 108 | 196 | 345 | 433 | 6.04e-14 | 70.5 |
| MS.gene28317.t1 | MTR_8g012340 | 40.860 | 93 | 51 | 2 | 126 | 218 | 54 | 142 | 9.27e-14 | 70.1 |
| MS.gene28317.t1 | MTR_8g012380 | 38.000 | 100 | 58 | 2 | 130 | 229 | 50 | 145 | 5.99e-13 | 64.7 |
| MS.gene28317.t1 | MTR_5g008680 | 40.678 | 118 | 55 | 5 | 112 | 223 | 393 | 501 | 1.86e-12 | 66.2 |
| MS.gene28317.t1 | MTR_7g053470 | 36.735 | 98 | 57 | 3 | 122 | 218 | 43 | 136 | 4.90e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28317.t1 | AT2G43560 | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.36e-101 | 292 |
| MS.gene28317.t1 | AT2G43560 | 82.424 | 165 | 29 | 0 | 65 | 229 | 3 | 167 | 1.04e-93 | 272 |
| MS.gene28317.t1 | AT5G45680 | 37.500 | 128 | 71 | 3 | 101 | 221 | 80 | 205 | 9.34e-18 | 79.0 |
| MS.gene28317.t1 | AT4G39710 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.87e-16 | 75.1 |
| MS.gene28317.t1 | AT4G39710 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.87e-16 | 75.1 |
| MS.gene28317.t1 | AT5G48580 | 40.449 | 89 | 49 | 2 | 130 | 218 | 52 | 136 | 4.57e-14 | 68.2 |
| MS.gene28317.t1 | AT3G60370 | 36.937 | 111 | 69 | 1 | 87 | 196 | 94 | 204 | 5.06e-14 | 69.3 |
| MS.gene28317.t1 | AT3G25220 | 39.362 | 94 | 53 | 2 | 130 | 223 | 52 | 141 | 6.96e-14 | 67.4 |
| MS.gene28317.t1 | AT3G60370 | 36.937 | 111 | 69 | 1 | 87 | 196 | 123 | 233 | 7.59e-14 | 69.3 |
| MS.gene28317.t1 | AT5G05420 | 43.333 | 90 | 44 | 3 | 130 | 218 | 56 | 139 | 3.01e-13 | 65.5 |
| MS.gene28317.t1 | AT3G25230 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 4.46e-12 | 65.5 |
| MS.gene28317.t1 | AT3G25230 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 5.21e-12 | 65.1 |
| MS.gene28317.t1 | AT5G48570 | 36.283 | 113 | 67 | 3 | 107 | 218 | 41 | 149 | 2.91e-11 | 62.8 |
| MS.gene28317.t1 | AT4G25340 | 38.182 | 110 | 60 | 5 | 112 | 218 | 369 | 473 | 3.13e-11 | 62.8 |
Find 58 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGCCACCCTTGGTCTTCC+TGG | 0.209095 | 4.4:-39021695 | None:intergenic |
| CAAGTTTCATCACATAATTT+TGG | 0.254636 | 4.4:-39019590 | None:intergenic |
| GTGCAGAATTAAGGCCTTTA+GGG | 0.275774 | 4.4:-39021673 | None:intergenic |
| CATTCATTTGATGCTGCTAA+TGG | 0.284118 | 4.4:+39019542 | MS.gene28317:CDS |
| GGTGCAGAATTAAGGCCTTT+AGG | 0.289156 | 4.4:-39021674 | None:intergenic |
| GTCTTCCTGGTGCAGAATTA+AGG | 0.291862 | 4.4:-39021682 | None:intergenic |
| AATTCACGTAGAGACTTTCT+TGG | 0.312447 | 4.4:+39019488 | MS.gene28317:CDS |
| ATGAGATATCAGGTGATAAA+AGG | 0.326010 | 4.4:+39021303 | MS.gene28317:intron |
| AGTAGTATTTGATGTAAGTT+TGG | 0.332631 | 4.4:+39021727 | MS.gene28317:CDS |
| TAGTCCACCAGTTGGATATC+AGG | 0.360762 | 4.4:+39020224 | MS.gene28317:CDS |
| AAGAAAGTCTCTACGTGAAT+TGG | 0.368565 | 4.4:-39019486 | None:intergenic |
| GACTTTCTTGGATTAGCATT+AGG | 0.374464 | 4.4:+39019500 | MS.gene28317:CDS |
| CAATACAAGGATATTAAAGT+TGG | 0.375129 | 4.4:+39020192 | MS.gene28317:CDS |
| TCAAATACTACTGGACTGTT+TGG | 0.387721 | 4.4:-39021716 | None:intergenic |
| CATCTGGACAAATATTTGAT+AGG | 0.389186 | 4.4:+39020769 | MS.gene28317:CDS |
| TTCTCAACAGAAATGCTTTG+AGG | 0.406961 | 4.4:-39019392 | None:intergenic |
| CTCCTACTTTCATGCTCAAA+AGG | 0.417335 | 4.4:-39021338 | None:intergenic |
| CCTATGGTAACTACTGAATC+AGG | 0.444760 | 4.4:+39020165 | MS.gene28317:CDS |
| TATGTTGCAATGGTTCCATC+TGG | 0.446081 | 4.4:+39020753 | MS.gene28317:CDS |
| TTTGATGCTGCTAATGGAGC+TGG | 0.447449 | 4.4:+39019548 | MS.gene28317:CDS |
| AAACTTACATCAAATACTAC+TGG | 0.453698 | 4.4:-39021725 | None:intergenic |
| TGATATCCAACTGGTGGACT+AGG | 0.460176 | 4.4:-39020222 | None:intergenic |
| GGACTGTTTGGAGCCACCCT+TGG | 0.463548 | 4.4:-39021704 | None:intergenic |
| AGACAGAAGCTTACTGATCC+AGG | 0.482305 | 4.4:-39021381 | None:intergenic |
| TCGCAGTTGGCATTCCCTAA+AGG | 0.493586 | 4.4:+39021659 | MS.gene28317:intron |
| TTACACACCTGATATCCAAC+TGG | 0.497134 | 4.4:-39020231 | None:intergenic |
| TCCTCATCCACGTCAAGTCC+TGG | 0.497402 | 4.4:-39021758 | None:intergenic |
| TTTATGCATGAAGGTACCTA+TGG | 0.499177 | 4.4:+39020149 | MS.gene28317:intron |
| AATACAAGGATATTAAAGTT+GGG | 0.500943 | 4.4:+39020193 | MS.gene28317:CDS |
| CATTAGCAGCATCAAATGAA+TGG | 0.505775 | 4.4:-39019541 | None:intergenic |
| AAACGTCGGCTGTACATACC+TGG | 0.513530 | 4.4:+39021363 | MS.gene28317:CDS |
| CTATCAAATATTTGTCCAGA+TGG | 0.522457 | 4.4:-39020768 | None:intergenic |
| TGAATCAGGTTTGCAATACA+AGG | 0.531477 | 4.4:+39020179 | MS.gene28317:CDS |
| AGGACTTACAAAGTGGAAGC+AGG | 0.541635 | 4.4:-39019243 | None:intergenic |
| ATCCTTGGATATGCCTAGCA+TGG | 0.544626 | 4.4:+39019210 | None:intergenic |
| GTGATAAAAGGACTTGATGA+AGG | 0.565095 | 4.4:+39021315 | MS.gene28317:CDS |
| ACCAGGACTTGACGTGGATG+AGG | 0.572224 | 4.4:+39021757 | MS.gene28317:CDS |
| TACAAAGTGGAAGCAGGAGA+GGG | 0.573806 | 4.4:-39019237 | None:intergenic |
| GGCTGCTAATTATGTTGCAA+TGG | 0.576500 | 4.4:+39020743 | MS.gene28317:CDS |
| GATATCCAACTGGTGGACTA+GGG | 0.580308 | 4.4:-39020221 | None:intergenic |
| AGGAGAGGGGAAGCCATGCT+AGG | 0.580475 | 4.4:-39019223 | None:intergenic |
| CTTTGAGGAGCAGTAAGAGA+AGG | 0.581278 | 4.4:-39019377 | None:intergenic |
| AAGTGAAGTCCACAGAGACA+AGG | 0.592596 | 4.4:+39019435 | MS.gene28317:CDS |
| GTAAGTTTGGAATATGTACC+AGG | 0.597022 | 4.4:+39021740 | MS.gene28317:CDS |
| AGTGCATTCCCTTGTCTCTG+TGG | 0.600039 | 4.4:-39019444 | None:intergenic |
| CAAGGCCCTAGTCCACCAGT+TGG | 0.601514 | 4.4:+39020216 | MS.gene28317:CDS |
| AAAGGCCTTAATTCTGCACC+AGG | 0.603111 | 4.4:+39021677 | MS.gene28317:CDS |
| CCTGATTCAGTAGTTACCAT+AGG | 0.608091 | 4.4:-39020165 | None:intergenic |
| CACACCTGATATCCAACTGG+TGG | 0.614939 | 4.4:-39020228 | None:intergenic |
| AAGGATATTAAAGTTGGGCA+AGG | 0.616109 | 4.4:+39020198 | MS.gene28317:CDS |
| TTACAAAGTGGAAGCAGGAG+AGG | 0.616382 | 4.4:-39019238 | None:intergenic |
| AGTGAAGTCCACAGAGACAA+GGG | 0.625615 | 4.4:+39019436 | MS.gene28317:CDS |
| TGCACCAGGAAGACCAAGGG+TGG | 0.644156 | 4.4:+39021691 | MS.gene28317:CDS |
| ACAAAGTGGAAGCAGGAGAG+GGG | 0.648340 | 4.4:-39019236 | None:intergenic |
| TTCTGCACCAGGAAGACCAA+GGG | 0.663256 | 4.4:+39021688 | MS.gene28317:CDS |
| TGAAAGTAGGAGGGAAACGT+CGG | 0.675740 | 4.4:+39021349 | MS.gene28317:CDS |
| ATTCTGCACCAGGAAGACCA+AGG | 0.707291 | 4.4:+39021687 | MS.gene28317:CDS |
| ATATGTACCAGGACTTGACG+TGG | 0.731552 | 4.4:+39021751 | MS.gene28317:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTAATCATTTGATA+AGG | - | chr4.4:39020596-39020615 | None:intergenic | 10.0% |
| !! | AATATTTATCTACTAAAATT+AGG | + | chr4.4:39019740-39019759 | MS.gene28317:intron | 10.0% |
| !! | ATATTAACATAATAATCAAT+TGG | + | chr4.4:39020929-39020948 | MS.gene28317:intron | 10.0% |
| !!! | TATTTTTCAAAAAACATTTA+AGG | - | chr4.4:39021225-39021244 | None:intergenic | 10.0% |
| !!! | ATATAAATTTAGAGTATCAT+AGG | - | chr4.4:39020395-39020414 | None:intergenic | 15.0% |
| !!! | TTTTAGTAGATAAATATTGA+AGG | - | chr4.4:39019738-39019757 | None:intergenic | 15.0% |
| !! | AAGATACAAATCAAGTATTT+AGG | - | chr4.4:39020344-39020363 | None:intergenic | 20.0% |
| !! | AATACAAGGATATTAAAGTT+GGG | + | chr4.4:39020193-39020212 | MS.gene28317:CDS | 20.0% |
| !! | TCATTAACTATCGATATTAA+TGG | - | chr4.4:39020115-39020134 | None:intergenic | 20.0% |
| !!! | ATGTTTTCGGTTAAAAAAAT+TGG | + | chr4.4:39019800-39019819 | MS.gene28317:intron | 20.0% |
| !!! | TACTTGTTTCTTTCTAAATT+TGG | - | chr4.4:39020955-39020974 | None:intergenic | 20.0% |
| !!! | TATGTGACTAAAAATGTTTT+CGG | + | chr4.4:39019787-39019806 | MS.gene28317:intron | 20.0% |
| !!! | TATTGTAATTTGTAATGCTT+TGG | + | chr4.4:39020980-39020999 | MS.gene28317:intron | 20.0% |
| !!! | TGTTTTCGGTTAAAAAAATT+GGG | + | chr4.4:39019801-39019820 | MS.gene28317:intron | 20.0% |
| !!! | TTTTATATAGATTCTACTTG+TGG | + | chr4.4:39019347-39019366 | MS.gene28317:intron | 20.0% |
| ! | AAACTTACATCAAATACTAC+TGG | - | chr4.4:39021728-39021747 | None:intergenic | 25.0% |
| ! | AGTAATCCTATATCATTATC+AGG | - | chr4.4:39020471-39020490 | None:intergenic | 25.0% |
| ! | AGTAGTATTTGATGTAAGTT+TGG | + | chr4.4:39021727-39021746 | MS.gene28317:CDS | 25.0% |
| ! | ATTTGTGAAGAACCTTATAA+TGG | - | chr4.4:39019912-39019931 | None:intergenic | 25.0% |
| ! | CAATACAAGGATATTAAAGT+TGG | + | chr4.4:39020192-39020211 | MS.gene28317:CDS | 25.0% |
| ! | CAGTATTATTTATGCATTGT+TGG | - | chr4.4:39019293-39019312 | None:intergenic | 25.0% |
| ! | GATTGACAGAAATTTGTAAT+CGG | - | chr4.4:39020801-39020820 | None:intergenic | 25.0% |
| ! | TAAGTACTTAATTCTAACGT+TGG | + | chr4.4:39021612-39021631 | MS.gene28317:intron | 25.0% |
| !! | AGAAGTACACTATATTTACA+TGG | - | chr4.4:39021476-39021495 | None:intergenic | 25.0% |
| !! | CAAGTTTCATCACATAATTT+TGG | - | chr4.4:39019593-39019612 | None:intergenic | 25.0% |
| !!! | CATAATTTTGGTTTTTCTTC+TGG | - | chr4.4:39019581-39019600 | None:intergenic | 25.0% |
| AAAACTTGCAATGAAATGAC+AGG | - | chr4.4:39019977-39019996 | None:intergenic | 30.0% | |
| AACTGAAAAAGGAATGATCA+AGG | - | chr4.4:39021014-39021033 | None:intergenic | 30.0% | |
| AATCATGCCTAATAAGATGT+TGG | + | chr4.4:39020900-39020919 | MS.gene28317:intron | 30.0% | |
| AATGAGCTGTAAAATTGGAA+AGG | - | chr4.4:39021154-39021173 | None:intergenic | 30.0% | |
| AGAAAGAGCTTGAAAATGTA+TGG | + | chr4.4:39019615-39019634 | MS.gene28317:intron | 30.0% | |
| AGATGACAGAAAACTGAAAA+AGG | - | chr4.4:39021025-39021044 | None:intergenic | 30.0% | |
| ATAACTGAGCATTCTAATGA+AGG | - | chr4.4:39021083-39021102 | None:intergenic | 30.0% | |
| ATGAGATATCAGGTGATAAA+AGG | + | chr4.4:39021303-39021322 | MS.gene28317:intron | 30.0% | |
| ATGAGCTGTAAAATTGGAAA+GGG | - | chr4.4:39021153-39021172 | None:intergenic | 30.0% | |
| CATCTGGACAAATATTTGAT+AGG | + | chr4.4:39020769-39020788 | MS.gene28317:CDS | 30.0% | |
| CTATCAAATATTTGTCCAGA+TGG | - | chr4.4:39020771-39020790 | None:intergenic | 30.0% | |
| CTGACAGTTTATTTACAGAT+TGG | + | chr4.4:39021589-39021608 | MS.gene28317:intron | 30.0% | |
| TAATCCTTTCAAAGACTAAC+TGG | + | chr4.4:39021269-39021288 | MS.gene28317:intron | 30.0% | |
| TGAAAGGATTATCAAACACT+AGG | - | chr4.4:39021260-39021279 | None:intergenic | 30.0% | |
| TGACAACATAATGGTGTAAA+AGG | + | chr4.4:39021538-39021557 | MS.gene28317:intron | 30.0% | |
| TTTATCACCTGATATCTCAT+CGG | - | chr4.4:39021303-39021322 | None:intergenic | 30.0% | |
| ! | AATGTGCATTGACAACATAA+TGG | + | chr4.4:39021529-39021548 | MS.gene28317:intron | 30.0% |
| ! | ACTGAGTATTTTATGCATGA+AGG | + | chr4.4:39020140-39020159 | MS.gene28317:intron | 30.0% |
| ! | CTTTAGCTAGTTTAGATTGA+AGG | - | chr4.4:39020563-39020582 | None:intergenic | 30.0% |
| ! | GGTACTGAAATCATCAATAT+TGG | - | chr4.4:39020450-39020469 | None:intergenic | 30.0% |
| ! | TCAGTACCTGATAATGATAT+AGG | + | chr4.4:39020462-39020481 | MS.gene28317:intron | 30.0% |
| ! | TTCAGTATTTTCTACGTAGA+AGG | - | chr4.4:39020427-39020446 | None:intergenic | 30.0% |
| ! | TTTCCAATTTTACAGCTCAT+TGG | + | chr4.4:39021153-39021172 | MS.gene28317:intron | 30.0% |
| ! | TTTCTGTCATCTTTCGATTT+TGG | + | chr4.4:39021033-39021052 | MS.gene28317:intron | 30.0% |
| ! | TTTTCATGTGCTTATCTGAT+AGG | + | chr4.4:39020719-39020738 | MS.gene28317:intron | 30.0% |
| !! | AATACCAGTTAGTCTTTGAA+AGG | - | chr4.4:39021276-39021295 | None:intergenic | 30.0% |
| !! | CATTGACTGCATTTTTGAAA+TGG | - | chr4.4:39020299-39020318 | None:intergenic | 30.0% |
| !! | GTCAATGCACATTTTAAGTA+TGG | - | chr4.4:39021522-39021541 | None:intergenic | 30.0% |
| !!! | AATTTTGGTTTTTCTTCTGG+TGG | - | chr4.4:39019578-39019597 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGCTGTTGTCTTT+GGG | + | chr4.4:39021056-39021075 | MS.gene28317:intron | 30.0% |
| AAGAAAGTCTCTACGTGAAT+TGG | - | chr4.4:39019489-39019508 | None:intergenic | 35.0% | |
| AAGGATATTAAAGTTGGGCA+AGG | + | chr4.4:39020198-39020217 | MS.gene28317:CDS | 35.0% | |
| AAGTGAAAGGACTTACAAAG+TGG | - | chr4.4:39019253-39019272 | None:intergenic | 35.0% | |
| AATTCACGTAGAGACTTTCT+TGG | + | chr4.4:39019488-39019507 | MS.gene28317:CDS | 35.0% | |
| ACGAAAGGACTTCCATTATA+AGG | + | chr4.4:39019897-39019916 | MS.gene28317:intron | 35.0% | |
| AGTTTAGATTGAAGGAAGCA+AGG | - | chr4.4:39020555-39020574 | None:intergenic | 35.0% | |
| ATACAACAGCAAACATCACT+TGG | - | chr4.4:39020851-39020870 | None:intergenic | 35.0% | |
| ATCACAGTTAAGGCATAGAA+AGG | - | chr4.4:39019657-39019676 | None:intergenic | 35.0% | |
| ATTCTGACTTCTGAGCAATA+TGG | - | chr4.4:39019688-39019707 | None:intergenic | 35.0% | |
| CATTAGCAGCATCAAATGAA+TGG | - | chr4.4:39019544-39019563 | None:intergenic | 35.0% | |
| CATTCATTTGATGCTGCTAA+TGG | + | chr4.4:39019542-39019561 | MS.gene28317:CDS | 35.0% | |
| CTCTTAAAACGTTTGACGAA+AGG | + | chr4.4:39019882-39019901 | MS.gene28317:intron | 35.0% | |
| GCATCAATCTCGTTCAAAAT+TGG | - | chr4.4:39020322-39020341 | None:intergenic | 35.0% | |
| GGAGACATTAATCACAGTTA+AGG | - | chr4.4:39019667-39019686 | None:intergenic | 35.0% | |
| GTGATAAAAGGACTTGATGA+AGG | + | chr4.4:39021315-39021334 | MS.gene28317:CDS | 35.0% | |
| TCAAATACTACTGGACTGTT+TGG | - | chr4.4:39021719-39021738 | None:intergenic | 35.0% | |
| TCACACTCCAACATCTTATT+AGG | - | chr4.4:39020910-39020929 | None:intergenic | 35.0% | |
| TCACAGTTAAGGCATAGAAA+GGG | - | chr4.4:39019656-39019675 | None:intergenic | 35.0% | |
| TCTCCAATGAGCTGTAAAAT+TGG | - | chr4.4:39021159-39021178 | None:intergenic | 35.0% | |
| TGAATCAGGTTTGCAATACA+AGG | + | chr4.4:39020179-39020198 | MS.gene28317:CDS | 35.0% | |
| TGACAGAAATTTGTAATCGG+CGG | - | chr4.4:39020798-39020817 | None:intergenic | 35.0% | |
| TGAGGAAAAGAGAAAGTGAA+AGG | - | chr4.4:39019266-39019285 | None:intergenic | 35.0% | |
| TGTATGCACTGTAATGAGAA+TGG | + | chr4.4:39021104-39021123 | MS.gene28317:intron | 35.0% | |
| TTATCACCTGATATCTCATC+GGG | - | chr4.4:39021302-39021321 | None:intergenic | 35.0% | |
| TTATGCATTGTTGGATAGTG+AGG | - | chr4.4:39019284-39019303 | None:intergenic | 35.0% | |
| TTCTCAACAGAAATGCTTTG+AGG | - | chr4.4:39019395-39019414 | None:intergenic | 35.0% | |
| ! | GTAAGTTTGGAATATGTACC+AGG | + | chr4.4:39021740-39021759 | MS.gene28317:CDS | 35.0% |
| ! | TTTTACAGCTCATTGGAGAA+AGG | + | chr4.4:39021160-39021179 | MS.gene28317:intron | 35.0% |
| ! | TTTTGAGCATGAAAGTAGGA+GGG | + | chr4.4:39021340-39021359 | MS.gene28317:CDS | 35.0% |
| !! | GACTTTCTTGGATTAGCATT+AGG | + | chr4.4:39019500-39019519 | MS.gene28317:CDS | 35.0% |
| !! | GTGTACTTCTAGTTTCTCAA+TGG | + | chr4.4:39021486-39021505 | MS.gene28317:intron | 35.0% |
| !! | GTTTTGAATCTTGCAATGCT+GGG | - | chr4.4:39021428-39021447 | None:intergenic | 35.0% |
| !! | TGTTTTGAATCTTGCAATGC+TGG | - | chr4.4:39021429-39021448 | None:intergenic | 35.0% |
| !! | TTCTTTTCTTGTTTCGCAGT+TGG | + | chr4.4:39021646-39021665 | MS.gene28317:intron | 35.0% |
| !! | TTTATGCATGAAGGTACCTA+TGG | + | chr4.4:39020149-39020168 | MS.gene28317:intron | 35.0% |
| !!! | GTTTTTGAAGCTGTTGTCTT+TGG | + | chr4.4:39021055-39021074 | MS.gene28317:intron | 35.0% |
| !!! | TGACTGCATTTTTGAAATGG+TGG | - | chr4.4:39020296-39020315 | None:intergenic | 35.0% |
| AACAATACACATGCTGACAG+AGG | - | chr4.4:39020675-39020694 | None:intergenic | 40.0% | |
| ACTGAACAAAGCTTCTGTCA+GGG | - | chr4.4:39020016-39020035 | None:intergenic | 40.0% | |
| ATTCAACCCGATGAGATATC+AGG | + | chr4.4:39021293-39021312 | MS.gene28317:intron | 40.0% | |
| CAACGCGAAAAATGTAAAGC+TGG | - | chr4.4:39021186-39021205 | None:intergenic | 40.0% | |
| CCTATGGTAACTACTGAATC+AGG | + | chr4.4:39020165-39020184 | MS.gene28317:CDS | 40.0% | |
| CCTGATTCAGTAGTTACCAT+AGG | - | chr4.4:39020168-39020187 | None:intergenic | 40.0% | |
| CTCCTACTTTCATGCTCAAA+AGG | - | chr4.4:39021341-39021360 | None:intergenic | 40.0% | |
| GGCTGCTAATTATGTTGCAA+TGG | + | chr4.4:39020743-39020762 | MS.gene28317:CDS | 40.0% | |
| GTGCAGAATTAAGGCCTTTA+GGG | - | chr4.4:39021676-39021695 | None:intergenic | 40.0% | |
| TAGATTGAAGGAAGCAAGGA+CGG | - | chr4.4:39020551-39020570 | None:intergenic | 40.0% | |
| TATGTTGCAATGGTTCCATC+TGG | + | chr4.4:39020753-39020772 | MS.gene28317:CDS | 40.0% | |
| TCATGTGCTTATCTGATAGG+TGG | + | chr4.4:39020722-39020741 | MS.gene28317:intron | 40.0% | |
| TTACACACCTGATATCCAAC+TGG | - | chr4.4:39020234-39020253 | None:intergenic | 40.0% | |
| ! | AGCTTCTGTCAGGGAATTTT+TGG | - | chr4.4:39020007-39020026 | None:intergenic | 40.0% |
| ! | CAGCTTTACATTTTTCGCGT+TGG | + | chr4.4:39021184-39021203 | MS.gene28317:CDS | 40.0% |
| ! | CTTTTGAGCATGAAAGTAGG+AGG | + | chr4.4:39021339-39021358 | MS.gene28317:CDS | 40.0% |
| ! | TACATTTTTCGCGTTGGATC+TGG | + | chr4.4:39021190-39021209 | MS.gene28317:CDS | 40.0% |
| AAAGGCCTTAATTCTGCACC+AGG | + | chr4.4:39021677-39021696 | MS.gene28317:CDS | 45.0% | |
| AAGTGAAGTCCACAGAGACA+AGG | + | chr4.4:39019435-39019454 | MS.gene28317:CDS | 45.0% | |
| AGACAGAAGCTTACTGATCC+AGG | - | chr4.4:39021384-39021403 | None:intergenic | 45.0% | |
| AGATTGAAGGAAGCAAGGAC+GGG | - | chr4.4:39020550-39020569 | None:intergenic | 45.0% | |
| AGGACTTACAAAGTGGAAGC+AGG | - | chr4.4:39019246-39019265 | None:intergenic | 45.0% | |
| AGTGAAGTCCACAGAGACAA+GGG | + | chr4.4:39019436-39019455 | MS.gene28317:CDS | 45.0% | |
| ATATGTACCAGGACTTGACG+TGG | + | chr4.4:39021751-39021770 | MS.gene28317:CDS | 45.0% | |
| CACTGAACAAAGCTTCTGTC+AGG | - | chr4.4:39020017-39020036 | None:intergenic | 45.0% | |
| GCATTCAAGGGAAACTGAAC+AGG | - | chr4.4:39020267-39020286 | None:intergenic | 45.0% | |
| GGTGCAGAATTAAGGCCTTT+AGG | - | chr4.4:39021677-39021696 | None:intergenic | 45.0% | |
| GTCTTCCTGGTGCAGAATTA+AGG | - | chr4.4:39021685-39021704 | None:intergenic | 45.0% | |
| TACAAAGTGGAAGCAGGAGA+GGG | - | chr4.4:39019240-39019259 | None:intergenic | 45.0% | |
| TAGTCCACCAGTTGGATATC+AGG | + | chr4.4:39020224-39020243 | MS.gene28317:CDS | 45.0% | |
| TGAAAGTAGGAGGGAAACGT+CGG | + | chr4.4:39021349-39021368 | MS.gene28317:CDS | 45.0% | |
| TTACAAAGTGGAAGCAGGAG+AGG | - | chr4.4:39019241-39019260 | None:intergenic | 45.0% | |
| TTGAAGGTGACACAACTGCA+TGG | - | chr4.4:39019722-39019741 | None:intergenic | 45.0% | |
| TTTGATGCTGCTAATGGAGC+TGG | + | chr4.4:39019548-39019567 | MS.gene28317:CDS | 45.0% | |
| ! | CTTTGAGGAGCAGTAAGAGA+AGG | - | chr4.4:39019380-39019399 | None:intergenic | 45.0% |
| ! | GGCCTTTTGAGCATGAAAGT+AGG | + | chr4.4:39021336-39021355 | MS.gene28317:CDS | 45.0% |
| !! | CTGACAGAAGCTTTGTTCAG+TGG | + | chr4.4:39020015-39020034 | MS.gene28317:intron | 45.0% |
| !! | GATATCCAACTGGTGGACTA+GGG | - | chr4.4:39020224-39020243 | None:intergenic | 45.0% |
| !! | TGATATCCAACTGGTGGACT+AGG | - | chr4.4:39020225-39020244 | None:intergenic | 45.0% |
| ACAAAGTGGAAGCAGGAGAG+GGG | - | chr4.4:39019239-39019258 | None:intergenic | 50.0% | |
| AGTGCATTCCCTTGTCTCTG+TGG | - | chr4.4:39019447-39019466 | None:intergenic | 50.0% | |
| ATTCTGCACCAGGAAGACCA+AGG | + | chr4.4:39021687-39021706 | MS.gene28317:CDS | 50.0% | |
| CACACCTGATATCCAACTGG+TGG | - | chr4.4:39020231-39020250 | None:intergenic | 50.0% | |
| GGAAAGGGTCATACTCACAC+AGG | - | chr4.4:39021138-39021157 | None:intergenic | 50.0% | |
| TCGCAGTTGGCATTCCCTAA+AGG | + | chr4.4:39021659-39021678 | MS.gene28317:intron | 50.0% | |
| TGGTGGAGACGAGCATTCAA+GGG | - | chr4.4:39020279-39020298 | None:intergenic | 50.0% | |
| TTCTGCACCAGGAAGACCAA+GGG | + | chr4.4:39021688-39021707 | MS.gene28317:CDS | 50.0% | |
| ! | AAACGTCGGCTGTACATACC+TGG | + | chr4.4:39021363-39021382 | MS.gene28317:CDS | 50.0% |
| ! | ATGGTGGAGACGAGCATTCA+AGG | - | chr4.4:39020280-39020299 | None:intergenic | 50.0% |
| ! | TTTTCGCGTTGGATCTGGTC+AGG | + | chr4.4:39021195-39021214 | MS.gene28317:CDS | 50.0% |
| ACCAGGACTTGACGTGGATG+AGG | + | chr4.4:39021757-39021776 | MS.gene28317:CDS | 55.0% | |
| TCCTCATCCACGTCAAGTCC+TGG | - | chr4.4:39021761-39021780 | None:intergenic | 55.0% | |
| AGGAGAGGGGAAGCCATGCT+AGG | - | chr4.4:39019226-39019245 | None:intergenic | 60.0% | |
| CAAGGCCCTAGTCCACCAGT+TGG | + | chr4.4:39020216-39020235 | MS.gene28317:CDS | 60.0% | |
| TGCACCAGGAAGACCAAGGG+TGG | + | chr4.4:39021691-39021710 | MS.gene28317:CDS | 60.0% | |
| ! | GGACTGTTTGGAGCCACCCT+TGG | - | chr4.4:39021707-39021726 | None:intergenic | 60.0% |
| ! | GGAGCCACCCTTGGTCTTCC+TGG | - | chr4.4:39021698-39021717 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39019220 | 39021784 | 39019220 | ID=MS.gene28317 |
| chr4.4 | mRNA | 39019220 | 39021784 | 39019220 | ID=MS.gene28317.t1;Parent=MS.gene28317 |
| chr4.4 | exon | 39019220 | 39019256 | 39019220 | ID=MS.gene28317.t1.exon1;Parent=MS.gene28317.t1 |
| chr4.4 | CDS | 39019220 | 39019256 | 39019220 | ID=cds.MS.gene28317.t1;Parent=MS.gene28317.t1 |
| chr4.4 | exon | 39019357 | 39019631 | 39019357 | ID=MS.gene28317.t1.exon2;Parent=MS.gene28317.t1 |
| chr4.4 | CDS | 39019357 | 39019631 | 39019357 | ID=cds.MS.gene28317.t1;Parent=MS.gene28317.t1 |
| chr4.4 | exon | 39020162 | 39020245 | 39020162 | ID=MS.gene28317.t1.exon3;Parent=MS.gene28317.t1 |
| chr4.4 | CDS | 39020162 | 39020245 | 39020162 | ID=cds.MS.gene28317.t1;Parent=MS.gene28317.t1 |
| chr4.4 | exon | 39020741 | 39020790 | 39020741 | ID=MS.gene28317.t1.exon4;Parent=MS.gene28317.t1 |
| chr4.4 | CDS | 39020741 | 39020790 | 39020741 | ID=cds.MS.gene28317.t1;Parent=MS.gene28317.t1 |
| chr4.4 | exon | 39021168 | 39021216 | 39021168 | ID=MS.gene28317.t1.exon5;Parent=MS.gene28317.t1 |
| chr4.4 | CDS | 39021168 | 39021216 | 39021168 | ID=cds.MS.gene28317.t1;Parent=MS.gene28317.t1 |
| chr4.4 | exon | 39021315 | 39021389 | 39021315 | ID=MS.gene28317.t1.exon6;Parent=MS.gene28317.t1 |
| chr4.4 | CDS | 39021315 | 39021389 | 39021315 | ID=cds.MS.gene28317.t1;Parent=MS.gene28317.t1 |
| chr4.4 | exon | 39021665 | 39021784 | 39021665 | ID=MS.gene28317.t1.exon7;Parent=MS.gene28317.t1 |
| chr4.4 | CDS | 39021665 | 39021784 | 39021665 | ID=cds.MS.gene28317.t1;Parent=MS.gene28317.t1 |
| Gene Sequence |
| Protein sequence |
