Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056607.t1 | XP_003606829.2 | 97.4 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 3.90E-121 | 444.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056607.t1 | O22870 | 68.1 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 2.5e-76 | 286.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056607.t1 | G7JEW8 | 97.4 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 2.8e-121 | 444.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056405 | MS.gene056607 | 0.934166 | 6.14E-96 | -1.69E-46 |
| MS.gene056607 | MS.gene23985 | 0.814408 | 1.56E-51 | -1.69E-46 |
| MS.gene056607 | MS.gene28317 | 0.971974 | 5.15E-134 | -1.69E-46 |
| MS.gene056607 | MS.gene39914 | 0.880712 | 4.38E-70 | -1.69E-46 |
| MS.gene056607 | MS.gene40100 | 0.864824 | 9.21E-65 | -1.69E-46 |
| MS.gene056607 | MS.gene50467 | 0.851872 | 6.69E-61 | -1.69E-46 |
| MS.gene056607 | MS.gene51143 | 0.804304 | 2.30E-49 | -1.69E-46 |
| MS.gene056607 | MS.gene72607 | 0.84317 | 1.65E-58 | -1.69E-46 |
| MS.gene056607 | MS.gene74655 | 0.830719 | 2.51E-55 | -1.69E-46 |
| MS.gene056607 | MS.gene80804 | 0.81752 | 3.16E-52 | -1.69E-46 |
| MS.gene056607 | MS.gene89555 | 0.827612 | 1.42E-54 | -1.69E-46 |
| MS.gene056607 | MS.gene90268 | 0.822331 | 2.51E-53 | -1.69E-46 |
| MS.gene056607 | MS.gene91966 | -0.809807 | 1.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056607.t1 | MTR_4g068190 | 97.380 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 3.31e-164 | 452 |
| MS.gene056607.t1 | MTR_8g091410 | 27.128 | 188 | 123 | 3 | 38 | 218 | 23 | 203 | 2.17e-17 | 78.2 |
| MS.gene056607.t1 | MTR_4g094785 | 33.918 | 171 | 92 | 5 | 55 | 218 | 80 | 236 | 3.76e-16 | 75.1 |
| MS.gene056607.t1 | MTR_8g080980 | 40.367 | 109 | 60 | 3 | 111 | 218 | 36 | 140 | 5.39e-16 | 76.6 |
| MS.gene056607.t1 | MTR_8g006755 | 40.449 | 89 | 53 | 0 | 108 | 196 | 345 | 433 | 5.87e-14 | 70.9 |
| MS.gene056607.t1 | MTR_8g012340 | 40.860 | 93 | 51 | 2 | 126 | 218 | 54 | 142 | 1.10e-13 | 70.1 |
| MS.gene056607.t1 | MTR_8g012380 | 38.000 | 100 | 58 | 2 | 130 | 229 | 50 | 145 | 6.06e-13 | 64.7 |
| MS.gene056607.t1 | MTR_5g008680 | 40.678 | 118 | 55 | 5 | 112 | 223 | 393 | 501 | 1.86e-12 | 66.2 |
| MS.gene056607.t1 | MTR_7g053470 | 36.735 | 98 | 57 | 3 | 122 | 218 | 43 | 136 | 5.33e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056607.t1 | AT2G43560 | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.27e-101 | 292 |
| MS.gene056607.t1 | AT2G43560 | 82.424 | 165 | 29 | 0 | 65 | 229 | 3 | 167 | 9.70e-94 | 272 |
| MS.gene056607.t1 | AT5G45680 | 37.500 | 128 | 71 | 3 | 101 | 221 | 80 | 205 | 9.73e-18 | 79.0 |
| MS.gene056607.t1 | AT4G39710 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.84e-16 | 75.1 |
| MS.gene056607.t1 | AT4G39710 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.84e-16 | 75.1 |
| MS.gene056607.t1 | AT5G48580 | 40.449 | 89 | 49 | 2 | 130 | 218 | 52 | 136 | 4.91e-14 | 67.8 |
| MS.gene056607.t1 | AT3G60370 | 36.937 | 111 | 69 | 1 | 87 | 196 | 94 | 204 | 5.27e-14 | 69.3 |
| MS.gene056607.t1 | AT3G60370 | 36.937 | 111 | 69 | 1 | 87 | 196 | 123 | 233 | 7.37e-14 | 69.3 |
| MS.gene056607.t1 | AT3G25220 | 39.362 | 94 | 53 | 2 | 130 | 223 | 52 | 141 | 7.79e-14 | 67.0 |
| MS.gene056607.t1 | AT5G05420 | 43.333 | 90 | 44 | 3 | 130 | 218 | 56 | 139 | 2.98e-13 | 65.5 |
| MS.gene056607.t1 | AT3G25230 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 4.99e-12 | 65.1 |
| MS.gene056607.t1 | AT3G25230 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 5.26e-12 | 65.1 |
| MS.gene056607.t1 | AT5G48570 | 36.283 | 113 | 67 | 3 | 107 | 218 | 41 | 149 | 3.31e-11 | 62.8 |
| MS.gene056607.t1 | AT4G25340 | 38.182 | 110 | 60 | 5 | 112 | 218 | 369 | 473 | 3.51e-11 | 62.8 |
Find 58 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGCCACCCTTGGTCTTCC+TGG | 0.209095 | 4.3:-36759384 | None:intergenic |
| CAAGTTTCATCACATAATTT+TGG | 0.254636 | 4.3:-36757332 | None:intergenic |
| GTGCAGAATTAAGGCCTTTA+GGG | 0.275774 | 4.3:-36759362 | None:intergenic |
| CATTCATTTGATGCTGCTAA+TGG | 0.284118 | 4.3:+36757284 | MS.gene056607:CDS |
| GGTGCAGAATTAAGGCCTTT+AGG | 0.289156 | 4.3:-36759363 | None:intergenic |
| GTCTTCCTGGTGCAGAATTA+AGG | 0.291862 | 4.3:-36759371 | None:intergenic |
| AATTCACGTAGAGACTTTCT+TGG | 0.312447 | 4.3:+36757230 | MS.gene056607:CDS |
| ATGAGATATCAGGTGATAAA+AGG | 0.326010 | 4.3:+36759045 | MS.gene056607:intron |
| AGTAGTATTTGATGTAAGTT+TGG | 0.332631 | 4.3:+36759416 | MS.gene056607:CDS |
| TAGTCCACCAGTTGGATATC+AGG | 0.360762 | 4.3:+36757966 | MS.gene056607:CDS |
| AAGAAAGTCTCTACGTGAAT+TGG | 0.368565 | 4.3:-36757228 | None:intergenic |
| GACTTTCTTGGATTAGCATT+AGG | 0.374464 | 4.3:+36757242 | MS.gene056607:CDS |
| CAATACAAGGATATTAAAGT+TGG | 0.375129 | 4.3:+36757934 | MS.gene056607:CDS |
| TCAAATACTACTGGACTGTT+TGG | 0.387721 | 4.3:-36759405 | None:intergenic |
| CATCTGGACAAATATTTGAT+AGG | 0.389186 | 4.3:+36758511 | MS.gene056607:CDS |
| TTCTCAACAGAAATGCTTTG+AGG | 0.406961 | 4.3:-36757134 | None:intergenic |
| CTCCTACTTTCATGCTCAAA+AGG | 0.417335 | 4.3:-36759080 | None:intergenic |
| CCTATGGTAACTACTGAATC+AGG | 0.444760 | 4.3:+36757907 | MS.gene056607:CDS |
| TATGTTGCAATGGTTCCATC+TGG | 0.446081 | 4.3:+36758495 | MS.gene056607:CDS |
| TTTGATGCTGCTAATGGAGC+TGG | 0.447449 | 4.3:+36757290 | MS.gene056607:CDS |
| AAACTTACATCAAATACTAC+TGG | 0.453698 | 4.3:-36759414 | None:intergenic |
| TGATATCCAACTGGTGGACT+AGG | 0.460176 | 4.3:-36757964 | None:intergenic |
| GGACTGTTTGGAGCCACCCT+TGG | 0.463548 | 4.3:-36759393 | None:intergenic |
| AGACAGAAGCTTACTGATCC+AGG | 0.482305 | 4.3:-36759123 | None:intergenic |
| TCGCAGTTGGCATTCCCTAA+AGG | 0.493586 | 4.3:+36759348 | MS.gene056607:intron |
| TTACACACCTGATATCCAAC+TGG | 0.497134 | 4.3:-36757973 | None:intergenic |
| TCCTCATCCACGTCAAGTCC+TGG | 0.497402 | 4.3:-36759447 | None:intergenic |
| TTTATGCATGAAGGTACCTA+TGG | 0.499177 | 4.3:+36757891 | MS.gene056607:intron |
| AATACAAGGATATTAAAGTT+GGG | 0.500943 | 4.3:+36757935 | MS.gene056607:CDS |
| CATTAGCAGCATCAAATGAA+TGG | 0.505775 | 4.3:-36757283 | None:intergenic |
| AAACGTCGGCTGTACATACC+TGG | 0.513530 | 4.3:+36759105 | MS.gene056607:CDS |
| CTATCAAATATTTGTCCAGA+TGG | 0.522457 | 4.3:-36758510 | None:intergenic |
| TGAATCAGGTTTGCAATACA+AGG | 0.531477 | 4.3:+36757921 | MS.gene056607:CDS |
| AGGACTTACAAAGTGGAAGC+AGG | 0.541635 | 4.3:-36756985 | None:intergenic |
| ATCCTTGGATATGCCTAGCA+TGG | 0.544626 | 4.3:+36756952 | None:intergenic |
| AGTGCATTCCCTTGTCTCTG+TGG | 0.560605 | 4.3:-36757186 | None:intergenic |
| GTGATAAAAGGACTTGATGA+AGG | 0.565095 | 4.3:+36759057 | MS.gene056607:CDS |
| ACCAGGACTTGACGTGGATG+AGG | 0.572224 | 4.3:+36759446 | MS.gene056607:CDS |
| TACAAAGTGGAAGCAGGAGA+GGG | 0.573806 | 4.3:-36756979 | None:intergenic |
| GGCTGCTAATTATGTTGCAA+TGG | 0.576500 | 4.3:+36758485 | MS.gene056607:CDS |
| GATATCCAACTGGTGGACTA+GGG | 0.580308 | 4.3:-36757963 | None:intergenic |
| AGGAGAGGGGAAGCCATGCT+AGG | 0.580475 | 4.3:-36756965 | None:intergenic |
| CTTTGAGGAGCAGTAAGAGA+AGG | 0.581278 | 4.3:-36757119 | None:intergenic |
| AAGTGAAGTCCACAGAGACA+AGG | 0.592596 | 4.3:+36757177 | MS.gene056607:CDS |
| GTAAGTTTGGAATATGTACC+AGG | 0.597022 | 4.3:+36759429 | MS.gene056607:CDS |
| CAAGGCCCTAGTCCACCAGT+TGG | 0.601514 | 4.3:+36757958 | MS.gene056607:CDS |
| AAAGGCCTTAATTCTGCACC+AGG | 0.603111 | 4.3:+36759366 | MS.gene056607:CDS |
| CCTGATTCAGTAGTTACCAT+AGG | 0.608091 | 4.3:-36757907 | None:intergenic |
| CACACCTGATATCCAACTGG+TGG | 0.614939 | 4.3:-36757970 | None:intergenic |
| AAGGATATTAAAGTTGGGCA+AGG | 0.616109 | 4.3:+36757940 | MS.gene056607:CDS |
| TTACAAAGTGGAAGCAGGAG+AGG | 0.616382 | 4.3:-36756980 | None:intergenic |
| AGTGAAGTCCACAGAGACAA+GGG | 0.625615 | 4.3:+36757178 | MS.gene056607:CDS |
| TGCACCAGGAAGACCAAGGG+TGG | 0.644156 | 4.3:+36759380 | MS.gene056607:CDS |
| ACAAAGTGGAAGCAGGAGAG+GGG | 0.648340 | 4.3:-36756978 | None:intergenic |
| TTCTGCACCAGGAAGACCAA+GGG | 0.663256 | 4.3:+36759377 | MS.gene056607:CDS |
| TGAAAGTAGGAGGGAAACGT+CGG | 0.675740 | 4.3:+36759091 | MS.gene056607:CDS |
| ATTCTGCACCAGGAAGACCA+AGG | 0.707291 | 4.3:+36759376 | MS.gene056607:CDS |
| ATATGTACCAGGACTTGACG+TGG | 0.731552 | 4.3:+36759440 | MS.gene056607:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTAATCATTTGATA+AGG | - | chr4.3:36758338-36758357 | None:intergenic | 10.0% |
| !! | AATATTTATCTACTAAAATT+AGG | + | chr4.3:36757482-36757501 | MS.gene056607:intron | 10.0% |
| !! | ATATTAACATAATAATCAAT+TGG | + | chr4.3:36758671-36758690 | MS.gene056607:intron | 10.0% |
| !!! | TATTTTTCAAAAAACATTTA+AGG | - | chr4.3:36758967-36758986 | None:intergenic | 10.0% |
| !!! | ATATAAATTTAGAGTATCAT+AGG | - | chr4.3:36758137-36758156 | None:intergenic | 15.0% |
| !!! | TTTTAGTAGATAAATATTGA+AGG | - | chr4.3:36757480-36757499 | None:intergenic | 15.0% |
| !! | AAGATACAAATCAAGTATTT+AGG | - | chr4.3:36758086-36758105 | None:intergenic | 20.0% |
| !! | AATACAAGGATATTAAAGTT+GGG | + | chr4.3:36757935-36757954 | MS.gene056607:CDS | 20.0% |
| !! | TCATTAACTATCGATATTAA+TGG | - | chr4.3:36757857-36757876 | None:intergenic | 20.0% |
| !!! | AAATACTTGATTTGTATCTT+AGG | + | chr4.3:36758086-36758105 | MS.gene056607:intron | 20.0% |
| !!! | ATGTTTTCGGTTAAAAAAAT+TGG | + | chr4.3:36757542-36757561 | MS.gene056607:intron | 20.0% |
| !!! | TACTTGTTTCTTTCTAAATT+TGG | - | chr4.3:36758697-36758716 | None:intergenic | 20.0% |
| !!! | TATGTGACTAAAAATGTTTT+CGG | + | chr4.3:36757529-36757548 | MS.gene056607:intron | 20.0% |
| !!! | TATTGTAATTTGTAATGCTT+TGG | + | chr4.3:36758722-36758741 | MS.gene056607:intron | 20.0% |
| !!! | TGTTTTCGGTTAAAAAAATT+GGG | + | chr4.3:36757543-36757562 | MS.gene056607:intron | 20.0% |
| !!! | TTTTATATAGATTCTACTTG+TGG | + | chr4.3:36757089-36757108 | MS.gene056607:intron | 20.0% |
| ! | AAACTTACATCAAATACTAC+TGG | - | chr4.3:36759417-36759436 | None:intergenic | 25.0% |
| ! | AGTAATCCTATATCATTATC+AGG | - | chr4.3:36758213-36758232 | None:intergenic | 25.0% |
| ! | AGTAGTATTTGATGTAAGTT+TGG | + | chr4.3:36759416-36759435 | MS.gene056607:CDS | 25.0% |
| ! | ATTTGTGAAGAACCTTATAA+TGG | - | chr4.3:36757654-36757673 | None:intergenic | 25.0% |
| ! | CAATACAAGGATATTAAAGT+TGG | + | chr4.3:36757934-36757953 | MS.gene056607:CDS | 25.0% |
| ! | CAGTATTATTTATGCATTGT+TGG | - | chr4.3:36757035-36757054 | None:intergenic | 25.0% |
| ! | GATTGACAGAAATTTGTAAT+CGG | - | chr4.3:36758543-36758562 | None:intergenic | 25.0% |
| ! | TAAGTACTTAATTCTAACGT+TGG | + | chr4.3:36759301-36759320 | MS.gene056607:intron | 25.0% |
| !! | CAAGTTTCATCACATAATTT+TGG | - | chr4.3:36757335-36757354 | None:intergenic | 25.0% |
| !!! | CATAATTTTGGTTTTTCTTC+TGG | - | chr4.3:36757323-36757342 | None:intergenic | 25.0% |
| AAAACTTGCAATGAAATGAC+AGG | - | chr4.3:36757719-36757738 | None:intergenic | 30.0% | |
| AACTGAAAAAGGAATGATCA+AGG | - | chr4.3:36758756-36758775 | None:intergenic | 30.0% | |
| AATCATGCCTAATAAGATGT+TGG | + | chr4.3:36758642-36758661 | MS.gene056607:intron | 30.0% | |
| AATGAGCTGTAAAATTGGAA+AGG | - | chr4.3:36758896-36758915 | None:intergenic | 30.0% | |
| AGAAAGAGCTTGAAAATGTA+TGG | + | chr4.3:36757357-36757376 | MS.gene056607:intron | 30.0% | |
| AGATGACAGAAAACTGAAAA+AGG | - | chr4.3:36758767-36758786 | None:intergenic | 30.0% | |
| ATAACTGAGCATTCTAATGA+AGG | - | chr4.3:36758825-36758844 | None:intergenic | 30.0% | |
| ATGAGATATCAGGTGATAAA+AGG | + | chr4.3:36759045-36759064 | MS.gene056607:intron | 30.0% | |
| ATGAGCTGTAAAATTGGAAA+GGG | - | chr4.3:36758895-36758914 | None:intergenic | 30.0% | |
| CATCTGGACAAATATTTGAT+AGG | + | chr4.3:36758511-36758530 | MS.gene056607:CDS | 30.0% | |
| CTATCAAATATTTGTCCAGA+TGG | - | chr4.3:36758513-36758532 | None:intergenic | 30.0% | |
| CTGACAGTTTATTTACAGAT+TGG | + | chr4.3:36759278-36759297 | MS.gene056607:intron | 30.0% | |
| TAATCCTTTCAAAGACTAAC+TGG | + | chr4.3:36759011-36759030 | MS.gene056607:intron | 30.0% | |
| TGAAAGGATTATCAAACACT+AGG | - | chr4.3:36759002-36759021 | None:intergenic | 30.0% | |
| TGACAACATAATGGTGTAAA+AGG | + | chr4.3:36759227-36759246 | MS.gene056607:intron | 30.0% | |
| TTTATCACCTGATATCTCAT+CGG | - | chr4.3:36759045-36759064 | None:intergenic | 30.0% | |
| ! | AATGTGCATTGACAACATAA+TGG | + | chr4.3:36759218-36759237 | MS.gene056607:intron | 30.0% |
| ! | ACTGAGTATTTTATGCATGA+AGG | + | chr4.3:36757882-36757901 | MS.gene056607:intron | 30.0% |
| ! | CTTTAGCTAGTTTAGATTGA+AGG | - | chr4.3:36758305-36758324 | None:intergenic | 30.0% |
| ! | GGTACTGAAATCATCAATAT+TGG | - | chr4.3:36758192-36758211 | None:intergenic | 30.0% |
| ! | TCAGTACCTGATAATGATAT+AGG | + | chr4.3:36758204-36758223 | MS.gene056607:intron | 30.0% |
| ! | TTCAGTATTTTCTACGTAGA+AGG | - | chr4.3:36758169-36758188 | None:intergenic | 30.0% |
| ! | TTTCCAATTTTACAGCTCAT+TGG | + | chr4.3:36758895-36758914 | MS.gene056607:intron | 30.0% |
| ! | TTTCTGTCATCTTTCGATTT+TGG | + | chr4.3:36758775-36758794 | MS.gene056607:intron | 30.0% |
| ! | TTTTCATGTGCTTATCTGAT+AGG | + | chr4.3:36758461-36758480 | MS.gene056607:intron | 30.0% |
| !! | AATACCAGTTAGTCTTTGAA+AGG | - | chr4.3:36759018-36759037 | None:intergenic | 30.0% |
| !! | CATTGACTGCATTTTTGAAA+TGG | - | chr4.3:36758041-36758060 | None:intergenic | 30.0% |
| !!! | AATTTTGGTTTTTCTTCTGG+TGG | - | chr4.3:36757320-36757339 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGCTGTTGTCTTT+GGG | + | chr4.3:36758798-36758817 | MS.gene056607:intron | 30.0% |
| AAGAAAGTCTCTACGTGAAT+TGG | - | chr4.3:36757231-36757250 | None:intergenic | 35.0% | |
| AAGGATATTAAAGTTGGGCA+AGG | + | chr4.3:36757940-36757959 | MS.gene056607:CDS | 35.0% | |
| AAGTGAAAGGACTTACAAAG+TGG | - | chr4.3:36756995-36757014 | None:intergenic | 35.0% | |
| AATTCACGTAGAGACTTTCT+TGG | + | chr4.3:36757230-36757249 | MS.gene056607:CDS | 35.0% | |
| ACGAAAGGACTTCCATTATA+AGG | + | chr4.3:36757639-36757658 | MS.gene056607:intron | 35.0% | |
| AGTTTAGATTGAAGGAAGCA+AGG | - | chr4.3:36758297-36758316 | None:intergenic | 35.0% | |
| ATACAACAGCAAACATCACT+TGG | - | chr4.3:36758593-36758612 | None:intergenic | 35.0% | |
| ATCACAGTTAAGGCATAGAA+AGG | - | chr4.3:36757399-36757418 | None:intergenic | 35.0% | |
| ATTCTGACTTCTGAGCAATA+TGG | - | chr4.3:36757430-36757449 | None:intergenic | 35.0% | |
| CATTAGCAGCATCAAATGAA+TGG | - | chr4.3:36757286-36757305 | None:intergenic | 35.0% | |
| CATTCATTTGATGCTGCTAA+TGG | + | chr4.3:36757284-36757303 | MS.gene056607:CDS | 35.0% | |
| CTCTTAAAACGTTTGACGAA+AGG | + | chr4.3:36757624-36757643 | MS.gene056607:intron | 35.0% | |
| GCATCAATCTCGTTCAAAAT+TGG | - | chr4.3:36758064-36758083 | None:intergenic | 35.0% | |
| GGAGACATTAATCACAGTTA+AGG | - | chr4.3:36757409-36757428 | None:intergenic | 35.0% | |
| GTGATAAAAGGACTTGATGA+AGG | + | chr4.3:36759057-36759076 | MS.gene056607:CDS | 35.0% | |
| TCAAATACTACTGGACTGTT+TGG | - | chr4.3:36759408-36759427 | None:intergenic | 35.0% | |
| TCACACTCCAACATCTTATT+AGG | - | chr4.3:36758652-36758671 | None:intergenic | 35.0% | |
| TCACAGTTAAGGCATAGAAA+GGG | - | chr4.3:36757398-36757417 | None:intergenic | 35.0% | |
| TCTCCAATGAGCTGTAAAAT+TGG | - | chr4.3:36758901-36758920 | None:intergenic | 35.0% | |
| TGAATCAGGTTTGCAATACA+AGG | + | chr4.3:36757921-36757940 | MS.gene056607:CDS | 35.0% | |
| TGACAGAAATTTGTAATCGG+CGG | - | chr4.3:36758540-36758559 | None:intergenic | 35.0% | |
| TGAGGAAAAGAGAAAGTGAA+AGG | - | chr4.3:36757008-36757027 | None:intergenic | 35.0% | |
| TGTATGCACTGTAATGAGAA+TGG | + | chr4.3:36758846-36758865 | MS.gene056607:intron | 35.0% | |
| TTATCACCTGATATCTCATC+GGG | - | chr4.3:36759044-36759063 | None:intergenic | 35.0% | |
| TTATGCATTGTTGGATTGTG+AGG | - | chr4.3:36757026-36757045 | None:intergenic | 35.0% | |
| TTCTCAACAGAAATGCTTTG+AGG | - | chr4.3:36757137-36757156 | None:intergenic | 35.0% | |
| ! | GTAAGTTTGGAATATGTACC+AGG | + | chr4.3:36759429-36759448 | MS.gene056607:CDS | 35.0% |
| ! | TTTTACAGCTCATTGGAGAA+AGG | + | chr4.3:36758902-36758921 | MS.gene056607:intron | 35.0% |
| ! | TTTTGAGCATGAAAGTAGGA+GGG | + | chr4.3:36759082-36759101 | MS.gene056607:CDS | 35.0% |
| !! | GACTTTCTTGGATTAGCATT+AGG | + | chr4.3:36757242-36757261 | MS.gene056607:CDS | 35.0% |
| !! | GTTTTGAATCTTGCAATGCT+GGG | - | chr4.3:36759170-36759189 | None:intergenic | 35.0% |
| !! | TGTTTTGAATCTTGCAATGC+TGG | - | chr4.3:36759171-36759190 | None:intergenic | 35.0% |
| !! | TTCTTTTCTTGTTTCGCAGT+TGG | + | chr4.3:36759335-36759354 | MS.gene056607:intron | 35.0% |
| !! | TTTATGCATGAAGGTACCTA+TGG | + | chr4.3:36757891-36757910 | MS.gene056607:intron | 35.0% |
| !!! | GTTTTTGAAGCTGTTGTCTT+TGG | + | chr4.3:36758797-36758816 | MS.gene056607:intron | 35.0% |
| !!! | TGACTGCATTTTTGAAATGG+TGG | - | chr4.3:36758038-36758057 | None:intergenic | 35.0% |
| AACAATACACATGCTGACAG+AGG | - | chr4.3:36758417-36758436 | None:intergenic | 40.0% | |
| ACTGAACAAAGCTTCTGTCA+GGG | - | chr4.3:36757758-36757777 | None:intergenic | 40.0% | |
| ATTCAACCCGATGAGATATC+AGG | + | chr4.3:36759035-36759054 | MS.gene056607:intron | 40.0% | |
| CAACGCGAAAAATGTAAAGC+TGG | - | chr4.3:36758928-36758947 | None:intergenic | 40.0% | |
| CCTATGGTAACTACTGAATC+AGG | + | chr4.3:36757907-36757926 | MS.gene056607:CDS | 40.0% | |
| CCTGATTCAGTAGTTACCAT+AGG | - | chr4.3:36757910-36757929 | None:intergenic | 40.0% | |
| CTCCTACTTTCATGCTCAAA+AGG | - | chr4.3:36759083-36759102 | None:intergenic | 40.0% | |
| GGCTGCTAATTATGTTGCAA+TGG | + | chr4.3:36758485-36758504 | MS.gene056607:CDS | 40.0% | |
| GTGCAGAATTAAGGCCTTTA+GGG | - | chr4.3:36759365-36759384 | None:intergenic | 40.0% | |
| TAGATTGAAGGAAGCAAGGA+CGG | - | chr4.3:36758293-36758312 | None:intergenic | 40.0% | |
| TATGTTGCAATGGTTCCATC+TGG | + | chr4.3:36758495-36758514 | MS.gene056607:CDS | 40.0% | |
| TCATGTGCTTATCTGATAGG+TGG | + | chr4.3:36758464-36758483 | MS.gene056607:intron | 40.0% | |
| TTACACACCTGATATCCAAC+TGG | - | chr4.3:36757976-36757995 | None:intergenic | 40.0% | |
| ! | AGCTTCTGTCAGGGAATTTT+TGG | - | chr4.3:36757749-36757768 | None:intergenic | 40.0% |
| ! | CAGCTTTACATTTTTCGCGT+TGG | + | chr4.3:36758926-36758945 | MS.gene056607:CDS | 40.0% |
| ! | CTTTTGAGCATGAAAGTAGG+AGG | + | chr4.3:36759081-36759100 | MS.gene056607:CDS | 40.0% |
| ! | TACATTTTTCGCGTTGGATC+TGG | + | chr4.3:36758932-36758951 | MS.gene056607:CDS | 40.0% |
| AAAGGCCTTAATTCTGCACC+AGG | + | chr4.3:36759366-36759385 | MS.gene056607:CDS | 45.0% | |
| AAGTGAAGTCCACAGAGACA+AGG | + | chr4.3:36757177-36757196 | MS.gene056607:CDS | 45.0% | |
| AGACAGAAGCTTACTGATCC+AGG | - | chr4.3:36759126-36759145 | None:intergenic | 45.0% | |
| AGATTGAAGGAAGCAAGGAC+GGG | - | chr4.3:36758292-36758311 | None:intergenic | 45.0% | |
| AGGACTTACAAAGTGGAAGC+AGG | - | chr4.3:36756988-36757007 | None:intergenic | 45.0% | |
| AGTGAAGTCCACAGAGACAA+GGG | + | chr4.3:36757178-36757197 | MS.gene056607:CDS | 45.0% | |
| ATATGTACCAGGACTTGACG+TGG | + | chr4.3:36759440-36759459 | MS.gene056607:CDS | 45.0% | |
| CACTGAACAAAGCTTCTGTC+AGG | - | chr4.3:36757759-36757778 | None:intergenic | 45.0% | |
| GGTGCAGAATTAAGGCCTTT+AGG | - | chr4.3:36759366-36759385 | None:intergenic | 45.0% | |
| GTCTTCCTGGTGCAGAATTA+AGG | - | chr4.3:36759374-36759393 | None:intergenic | 45.0% | |
| TACAAAGTGGAAGCAGGAGA+GGG | - | chr4.3:36756982-36757001 | None:intergenic | 45.0% | |
| TAGTCCACCAGTTGGATATC+AGG | + | chr4.3:36757966-36757985 | MS.gene056607:CDS | 45.0% | |
| TGAAAGTAGGAGGGAAACGT+CGG | + | chr4.3:36759091-36759110 | MS.gene056607:CDS | 45.0% | |
| TTACAAAGTGGAAGCAGGAG+AGG | - | chr4.3:36756983-36757002 | None:intergenic | 45.0% | |
| TTGAAGGTGACACAACTGCA+TGG | - | chr4.3:36757464-36757483 | None:intergenic | 45.0% | |
| TTTGATGCTGCTAATGGAGC+TGG | + | chr4.3:36757290-36757309 | MS.gene056607:CDS | 45.0% | |
| ! | CTTTGAGGAGCAGTAAGAGA+AGG | - | chr4.3:36757122-36757141 | None:intergenic | 45.0% |
| ! | GGCCTTTTGAGCATGAAAGT+AGG | + | chr4.3:36759078-36759097 | MS.gene056607:CDS | 45.0% |
| !! | CTGACAGAAGCTTTGTTCAG+TGG | + | chr4.3:36757757-36757776 | MS.gene056607:intron | 45.0% |
| !! | GATATCCAACTGGTGGACTA+GGG | - | chr4.3:36757966-36757985 | None:intergenic | 45.0% |
| !! | TGATATCCAACTGGTGGACT+AGG | - | chr4.3:36757967-36757986 | None:intergenic | 45.0% |
| ACAAAGTGGAAGCAGGAGAG+GGG | - | chr4.3:36756981-36757000 | None:intergenic | 50.0% | |
| AGTGCATTCCCTTGTCTCTG+TGG | - | chr4.3:36757189-36757208 | None:intergenic | 50.0% | |
| ATTCTGCACCAGGAAGACCA+AGG | + | chr4.3:36759376-36759395 | MS.gene056607:CDS | 50.0% | |
| CACACCTGATATCCAACTGG+TGG | - | chr4.3:36757973-36757992 | None:intergenic | 50.0% | |
| GCGTTCAAGGGAAACTGAAC+AGG | - | chr4.3:36758009-36758028 | None:intergenic | 50.0% | |
| GGAAAGGGTCATACTCACAC+AGG | - | chr4.3:36758880-36758899 | None:intergenic | 50.0% | |
| TCGCAGTTGGCATTCCCTAA+AGG | + | chr4.3:36759348-36759367 | MS.gene056607:intron | 50.0% | |
| TTCTGCACCAGGAAGACCAA+GGG | + | chr4.3:36759377-36759396 | MS.gene056607:CDS | 50.0% | |
| ! | AAACGTCGGCTGTACATACC+TGG | + | chr4.3:36759105-36759124 | MS.gene056607:CDS | 50.0% |
| ! | TTTTCGCGTTGGATCTGGTC+AGG | + | chr4.3:36758937-36758956 | MS.gene056607:CDS | 50.0% |
| ACCAGGACTTGACGTGGATG+AGG | + | chr4.3:36759446-36759465 | MS.gene056607:CDS | 55.0% | |
| TCCTCATCCACGTCAAGTCC+TGG | - | chr4.3:36759450-36759469 | None:intergenic | 55.0% | |
| TGGTGGAGACGAGCGTTCAA+GGG | - | chr4.3:36758021-36758040 | None:intergenic | 55.0% | |
| ! | ATGGTGGAGACGAGCGTTCA+AGG | - | chr4.3:36758022-36758041 | None:intergenic | 55.0% |
| AGGAGAGGGGAAGCCATGCT+AGG | - | chr4.3:36756968-36756987 | None:intergenic | 60.0% | |
| CAAGGCCCTAGTCCACCAGT+TGG | + | chr4.3:36757958-36757977 | MS.gene056607:CDS | 60.0% | |
| TGCACCAGGAAGACCAAGGG+TGG | + | chr4.3:36759380-36759399 | MS.gene056607:CDS | 60.0% | |
| ! | GGACTGTTTGGAGCCACCCT+TGG | - | chr4.3:36759396-36759415 | None:intergenic | 60.0% |
| ! | GGAGCCACCCTTGGTCTTCC+TGG | - | chr4.3:36759387-36759406 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 36756962 | 36759473 | 36756962 | ID=MS.gene056607 |
| chr4.3 | mRNA | 36756962 | 36759473 | 36756962 | ID=MS.gene056607.t1;Parent=MS.gene056607 |
| chr4.3 | exon | 36756962 | 36756998 | 36756962 | ID=MS.gene056607.t1.exon1;Parent=MS.gene056607.t1 |
| chr4.3 | CDS | 36756962 | 36756998 | 36756962 | ID=cds.MS.gene056607.t1;Parent=MS.gene056607.t1 |
| chr4.3 | exon | 36757099 | 36757373 | 36757099 | ID=MS.gene056607.t1.exon2;Parent=MS.gene056607.t1 |
| chr4.3 | CDS | 36757099 | 36757373 | 36757099 | ID=cds.MS.gene056607.t1;Parent=MS.gene056607.t1 |
| chr4.3 | exon | 36757904 | 36757987 | 36757904 | ID=MS.gene056607.t1.exon3;Parent=MS.gene056607.t1 |
| chr4.3 | CDS | 36757904 | 36757987 | 36757904 | ID=cds.MS.gene056607.t1;Parent=MS.gene056607.t1 |
| chr4.3 | exon | 36758483 | 36758532 | 36758483 | ID=MS.gene056607.t1.exon4;Parent=MS.gene056607.t1 |
| chr4.3 | CDS | 36758483 | 36758532 | 36758483 | ID=cds.MS.gene056607.t1;Parent=MS.gene056607.t1 |
| chr4.3 | exon | 36758910 | 36758958 | 36758910 | ID=MS.gene056607.t1.exon5;Parent=MS.gene056607.t1 |
| chr4.3 | CDS | 36758910 | 36758958 | 36758910 | ID=cds.MS.gene056607.t1;Parent=MS.gene056607.t1 |
| chr4.3 | exon | 36759057 | 36759131 | 36759057 | ID=MS.gene056607.t1.exon6;Parent=MS.gene056607.t1 |
| chr4.3 | CDS | 36759057 | 36759131 | 36759057 | ID=cds.MS.gene056607.t1;Parent=MS.gene056607.t1 |
| chr4.3 | exon | 36759354 | 36759473 | 36759354 | ID=MS.gene056607.t1.exon7;Parent=MS.gene056607.t1 |
| chr4.3 | CDS | 36759354 | 36759473 | 36759354 | ID=cds.MS.gene056607.t1;Parent=MS.gene056607.t1 |
| Gene Sequence |
| Protein sequence |
