Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056405.t1 | XP_003606829.2 | 97.8 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 1.30E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056405.t1 | O22870 | 68.1 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 1.9e-76 | 287.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056405.t1 | G7JEW8 | 97.8 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 9.6e-122 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056405 | MS.gene056607 | 0.934166 | 6.14E-96 | -1.69E-46 |
| MS.gene056405 | MS.gene20919 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene056405 | MS.gene23985 | 0.838668 | 2.51E-57 | -1.69E-46 |
| MS.gene056405 | MS.gene28317 | 0.971596 | 2.06E-133 | -1.69E-46 |
| MS.gene056405 | MS.gene39914 | 0.891346 | 4.32E-74 | -1.69E-46 |
| MS.gene056405 | MS.gene40100 | 0.867805 | 1.04E-65 | -1.69E-46 |
| MS.gene056405 | MS.gene50467 | 0.851113 | 1.10E-60 | -1.69E-46 |
| MS.gene056405 | MS.gene51143 | 0.824623 | 7.30E-54 | -1.69E-46 |
| MS.gene056405 | MS.gene65534 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene056405 | MS.gene72607 | 0.837255 | 5.79E-57 | -1.69E-46 |
| MS.gene056405 | MS.gene74655 | 0.841378 | 4.93E-58 | -1.69E-46 |
| MS.gene056405 | MS.gene80804 | 0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene056405 | MS.gene89555 | 0.857171 | 1.96E-62 | -1.69E-46 |
| MS.gene056405 | MS.gene90268 | 0.817472 | 3.24E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056405.t1 | MTR_4g068190 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 7.86e-165 | 454 |
| MS.gene056405.t1 | MTR_8g091410 | 27.568 | 185 | 117 | 4 | 41 | 218 | 29 | 203 | 1.46e-17 | 78.6 |
| MS.gene056405.t1 | MTR_4g094785 | 33.918 | 171 | 92 | 5 | 55 | 218 | 80 | 236 | 4.08e-16 | 75.1 |
| MS.gene056405.t1 | MTR_8g080980 | 40.367 | 109 | 60 | 3 | 111 | 218 | 36 | 140 | 4.85e-16 | 77.0 |
| MS.gene056405.t1 | MTR_8g006755 | 40.449 | 89 | 53 | 0 | 108 | 196 | 345 | 433 | 6.04e-14 | 70.5 |
| MS.gene056405.t1 | MTR_8g012340 | 40.860 | 93 | 51 | 2 | 126 | 218 | 54 | 142 | 9.27e-14 | 70.1 |
| MS.gene056405.t1 | MTR_8g012380 | 38.000 | 100 | 58 | 2 | 130 | 229 | 50 | 145 | 5.99e-13 | 64.7 |
| MS.gene056405.t1 | MTR_5g008680 | 40.678 | 118 | 55 | 5 | 112 | 223 | 393 | 501 | 1.86e-12 | 66.2 |
| MS.gene056405.t1 | MTR_7g053470 | 36.735 | 98 | 57 | 3 | 122 | 218 | 43 | 136 | 4.90e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056405.t1 | AT2G43560 | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.36e-101 | 292 |
| MS.gene056405.t1 | AT2G43560 | 82.424 | 165 | 29 | 0 | 65 | 229 | 3 | 167 | 1.04e-93 | 272 |
| MS.gene056405.t1 | AT5G45680 | 37.500 | 128 | 71 | 3 | 101 | 221 | 80 | 205 | 9.34e-18 | 79.0 |
| MS.gene056405.t1 | AT4G39710 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.87e-16 | 75.1 |
| MS.gene056405.t1 | AT4G39710 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.87e-16 | 75.1 |
| MS.gene056405.t1 | AT5G48580 | 40.449 | 89 | 49 | 2 | 130 | 218 | 52 | 136 | 4.57e-14 | 68.2 |
| MS.gene056405.t1 | AT3G60370 | 36.937 | 111 | 69 | 1 | 87 | 196 | 94 | 204 | 5.06e-14 | 69.3 |
| MS.gene056405.t1 | AT3G25220 | 39.362 | 94 | 53 | 2 | 130 | 223 | 52 | 141 | 6.96e-14 | 67.4 |
| MS.gene056405.t1 | AT3G60370 | 36.937 | 111 | 69 | 1 | 87 | 196 | 123 | 233 | 7.59e-14 | 69.3 |
| MS.gene056405.t1 | AT5G05420 | 43.333 | 90 | 44 | 3 | 130 | 218 | 56 | 139 | 3.01e-13 | 65.5 |
| MS.gene056405.t1 | AT3G25230 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 4.46e-12 | 65.5 |
| MS.gene056405.t1 | AT3G25230 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 5.21e-12 | 65.1 |
| MS.gene056405.t1 | AT5G48570 | 36.283 | 113 | 67 | 3 | 107 | 218 | 41 | 149 | 2.91e-11 | 62.8 |
| MS.gene056405.t1 | AT4G25340 | 38.182 | 110 | 60 | 5 | 112 | 218 | 369 | 473 | 3.13e-11 | 62.8 |
Find 57 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGCCACCCTTGGTCTTCC+TGG | 0.209095 | 4.1:-33827532 | None:intergenic |
| CAAGTTTCATCACATAATTT+TGG | 0.254636 | 4.1:-33825427 | None:intergenic |
| CATTCATTTGATGCTGCTAA+TGG | 0.284118 | 4.1:+33825379 | MS.gene056405:CDS |
| GTCTTCCTGGTGCAGAATTA+AGG | 0.291862 | 4.1:-33827519 | None:intergenic |
| AATTCACGTAGAGACTTTCT+TGG | 0.312447 | 4.1:+33825325 | MS.gene056405:CDS |
| ATGAGATATCAGGTGATAAA+AGG | 0.326010 | 4.1:+33827140 | MS.gene056405:intron |
| AGTAGTATTTGATGTAAGTT+TGG | 0.332631 | 4.1:+33827564 | MS.gene056405:CDS |
| GGTGCAGAATTAAGGCCTTT+AGG | 0.339698 | 4.1:-33827511 | None:intergenic |
| TAGTCCACCAGTTGGATATC+AGG | 0.360762 | 4.1:+33826061 | MS.gene056405:CDS |
| AAGAAAGTCTCTACGTGAAT+TGG | 0.368565 | 4.1:-33825323 | None:intergenic |
| GACTTTCTTGGATTAGCATT+AGG | 0.374464 | 4.1:+33825337 | MS.gene056405:CDS |
| TCAAATACTACTGGACTGTT+TGG | 0.387721 | 4.1:-33827553 | None:intergenic |
| CATCTGGACAAATATTTGAT+AGG | 0.389186 | 4.1:+33826606 | MS.gene056405:CDS |
| CAATACAAGGATATTAAAGT+TGG | 0.393522 | 4.1:+33826029 | MS.gene056405:CDS |
| TTCTCAACAGAAATGCTTTG+AGG | 0.406961 | 4.1:-33825229 | None:intergenic |
| CTCCTACTTTCATGCTCAAA+AGG | 0.417335 | 4.1:-33827175 | None:intergenic |
| CCTATGGTAACTACTGAATC+AGG | 0.444760 | 4.1:+33826002 | MS.gene056405:CDS |
| TATGTTGCAATGGTTCCATC+TGG | 0.446081 | 4.1:+33826590 | MS.gene056405:CDS |
| TTTGATGCTGCTAATGGAGC+TGG | 0.447449 | 4.1:+33825385 | MS.gene056405:CDS |
| AAACTTACATCAAATACTAC+TGG | 0.453698 | 4.1:-33827562 | None:intergenic |
| TGATATCCAACTGGTGGACT+AGG | 0.460176 | 4.1:-33826059 | None:intergenic |
| GGACTGTTTGGAGCCACCCT+TGG | 0.463548 | 4.1:-33827541 | None:intergenic |
| AGACAGAAGCTTACTGATCC+AGG | 0.482305 | 4.1:-33827218 | None:intergenic |
| AATACAAGGATATTAAAGTT+GGG | 0.491962 | 4.1:+33826030 | MS.gene056405:CDS |
| TTACACACCTGATATCCAAC+TGG | 0.497134 | 4.1:-33826068 | None:intergenic |
| TCCTCATCCACGTCAAGTCC+TGG | 0.497402 | 4.1:-33827595 | None:intergenic |
| TTTATGCATGAAGGTACCTA+TGG | 0.499177 | 4.1:+33825986 | MS.gene056405:intron |
| TCGCAGTTGGCATTTCCTAA+AGG | 0.501586 | 4.1:+33827496 | MS.gene056405:intron |
| CATTAGCAGCATCAAATGAA+TGG | 0.505775 | 4.1:-33825378 | None:intergenic |
| AAACGTCGGCTGTACATACC+TGG | 0.513530 | 4.1:+33827200 | MS.gene056405:CDS |
| CTATCAAATATTTGTCCAGA+TGG | 0.522457 | 4.1:-33826605 | None:intergenic |
| AGGACTTACAAAGTGGAAGC+AGG | 0.541635 | 4.1:-33825080 | None:intergenic |
| ATCCTTGGATATGCCTAGCA+TGG | 0.544626 | 4.1:+33825047 | None:intergenic |
| GTGATAAAAGGACTTGATGA+AGG | 0.565095 | 4.1:+33827152 | MS.gene056405:CDS |
| TGAATCAGGTTTACAATACA+AGG | 0.570952 | 4.1:+33826016 | MS.gene056405:CDS |
| ACCAGGACTTGACGTGGATG+AGG | 0.572224 | 4.1:+33827594 | MS.gene056405:CDS |
| TACAAAGTGGAAGCAGGAGA+GGG | 0.573806 | 4.1:-33825074 | None:intergenic |
| GGCTGCTAATTATGTTGCAA+TGG | 0.576500 | 4.1:+33826580 | MS.gene056405:CDS |
| GATATCCAACTGGTGGACTA+GGG | 0.580308 | 4.1:-33826058 | None:intergenic |
| AGGAGAGGGGAAGCCATGCT+AGG | 0.580475 | 4.1:-33825060 | None:intergenic |
| CTTTGAGGAGCAGTAAGAGA+AGG | 0.581278 | 4.1:-33825214 | None:intergenic |
| AAGTGAAGTCCACAGAGACA+AGG | 0.592596 | 4.1:+33825272 | MS.gene056405:CDS |
| GTAAGTTTGGAATATGTACC+AGG | 0.597022 | 4.1:+33827577 | MS.gene056405:CDS |
| AGTGCATTCCCTTGTCTCTG+TGG | 0.600039 | 4.1:-33825281 | None:intergenic |
| CAAGGCCCTAGTCCACCAGT+TGG | 0.601514 | 4.1:+33826053 | MS.gene056405:CDS |
| AAAGGCCTTAATTCTGCACC+AGG | 0.603111 | 4.1:+33827514 | MS.gene056405:CDS |
| CCTGATTCAGTAGTTACCAT+AGG | 0.608091 | 4.1:-33826002 | None:intergenic |
| CACACCTGATATCCAACTGG+TGG | 0.614939 | 4.1:-33826065 | None:intergenic |
| AAGGATATTAAAGTTGGGCA+AGG | 0.616109 | 4.1:+33826035 | MS.gene056405:CDS |
| TTACAAAGTGGAAGCAGGAG+AGG | 0.616382 | 4.1:-33825075 | None:intergenic |
| AGTGAAGTCCACAGAGACAA+GGG | 0.625615 | 4.1:+33825273 | MS.gene056405:CDS |
| TGCACCAGGAAGACCAAGGG+TGG | 0.644156 | 4.1:+33827528 | MS.gene056405:CDS |
| ACAAAGTGGAAGCAGGAGAG+GGG | 0.648340 | 4.1:-33825073 | None:intergenic |
| TTCTGCACCAGGAAGACCAA+GGG | 0.663256 | 4.1:+33827525 | MS.gene056405:CDS |
| TGAAAGTAGGAGGGAAACGT+CGG | 0.675740 | 4.1:+33827186 | MS.gene056405:CDS |
| ATTCTGCACCAGGAAGACCA+AGG | 0.707291 | 4.1:+33827524 | MS.gene056405:CDS |
| ATATGTACCAGGACTTGACG+TGG | 0.731552 | 4.1:+33827588 | MS.gene056405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTAATCATTTGATA+AGG | - | chr4.1:33826433-33826452 | None:intergenic | 10.0% |
| !! | AATATTTATCTACTAAAATT+AGG | + | chr4.1:33825577-33825596 | MS.gene056405:intron | 10.0% |
| !! | ATATTAACATAATAATCAAT+TGG | + | chr4.1:33826766-33826785 | MS.gene056405:intron | 10.0% |
| !!! | TATTTTTCAAAAAACATTTA+AGG | - | chr4.1:33827062-33827081 | None:intergenic | 10.0% |
| !!! | ATATAAATTTAGAGTATCAT+AGG | - | chr4.1:33826232-33826251 | None:intergenic | 15.0% |
| !!! | TTTTAGTAGATAAATATTGA+AGG | - | chr4.1:33825575-33825594 | None:intergenic | 15.0% |
| !! | AAGATACAAATCAAGTATTT+AGG | - | chr4.1:33826181-33826200 | None:intergenic | 20.0% |
| !! | AATACAAGGATATTAAAGTT+GGG | + | chr4.1:33826030-33826049 | MS.gene056405:CDS | 20.0% |
| !! | TCATTAACTATCGATATTAA+TGG | - | chr4.1:33825952-33825971 | None:intergenic | 20.0% |
| !!! | AAATACTTGATTTGTATCTT+AGG | + | chr4.1:33826181-33826200 | MS.gene056405:intron | 20.0% |
| !!! | ATGTTTTCGGTTAAAAAAAT+TGG | + | chr4.1:33825637-33825656 | MS.gene056405:intron | 20.0% |
| !!! | TACTTGTTTCTTTCTAAATT+TGG | - | chr4.1:33826792-33826811 | None:intergenic | 20.0% |
| !!! | TATCTGACTAAAAATGTTTT+CGG | + | chr4.1:33825624-33825643 | MS.gene056405:intron | 20.0% |
| !!! | TATTGTAATTTGTAATGCTT+TGG | + | chr4.1:33826817-33826836 | MS.gene056405:intron | 20.0% |
| !!! | TGTTTTCGGTTAAAAAAATT+GGG | + | chr4.1:33825638-33825657 | MS.gene056405:intron | 20.0% |
| !!! | TTTTATATAGATTCTACTTG+TGG | + | chr4.1:33825184-33825203 | MS.gene056405:intron | 20.0% |
| ! | AAACTTACATCAAATACTAC+TGG | - | chr4.1:33827565-33827584 | None:intergenic | 25.0% |
| ! | AGTAATCCTATATCAATATC+AGG | - | chr4.1:33826308-33826327 | None:intergenic | 25.0% |
| ! | AGTAGTATTTGATGTAAGTT+TGG | + | chr4.1:33827564-33827583 | MS.gene056405:CDS | 25.0% |
| ! | ATTTGTGAAGAACCTTATAA+TGG | - | chr4.1:33825749-33825768 | None:intergenic | 25.0% |
| ! | CAATACAAGGATATTAAAGT+TGG | + | chr4.1:33826029-33826048 | MS.gene056405:CDS | 25.0% |
| ! | CAGTATTATTTATGCATTGT+TGG | - | chr4.1:33825130-33825149 | None:intergenic | 25.0% |
| ! | GATTGACAGAAATTTGTAAT+CGG | - | chr4.1:33826638-33826657 | None:intergenic | 25.0% |
| ! | TAAGTACTTAATTCTAACGT+TGG | + | chr4.1:33827449-33827468 | MS.gene056405:intron | 25.0% |
| !! | AGAAGTACACTATATTTACA+TGG | - | chr4.1:33827313-33827332 | None:intergenic | 25.0% |
| !! | CAAGTTTCATCACATAATTT+TGG | - | chr4.1:33825430-33825449 | None:intergenic | 25.0% |
| !!! | CATAATTTTGGTTTTTCTTC+TGG | - | chr4.1:33825418-33825437 | None:intergenic | 25.0% |
| AAAACTTGCAATGAAATGAC+AGG | - | chr4.1:33825814-33825833 | None:intergenic | 30.0% | |
| AACTGAAAAAGGAATGATCA+AGG | - | chr4.1:33826851-33826870 | None:intergenic | 30.0% | |
| AATCATGCCTAATAAGATGT+TGG | + | chr4.1:33826737-33826756 | MS.gene056405:intron | 30.0% | |
| AATGAGCTGTAAAATTGGAA+AGG | - | chr4.1:33826991-33827010 | None:intergenic | 30.0% | |
| AGAAAGAGCTTGAAAATGTA+TGG | + | chr4.1:33825452-33825471 | MS.gene056405:intron | 30.0% | |
| AGATGACAGAAAACTGAAAA+AGG | - | chr4.1:33826862-33826881 | None:intergenic | 30.0% | |
| ATAACTGAGCATTCTAATGA+AGG | - | chr4.1:33826920-33826939 | None:intergenic | 30.0% | |
| ATGAGATATCAGGTGATAAA+AGG | + | chr4.1:33827140-33827159 | MS.gene056405:intron | 30.0% | |
| ATGAGCTGTAAAATTGGAAA+GGG | - | chr4.1:33826990-33827009 | None:intergenic | 30.0% | |
| CATCTGGACAAATATTTGAT+AGG | + | chr4.1:33826606-33826625 | MS.gene056405:CDS | 30.0% | |
| CTATCAAATATTTGTCCAGA+TGG | - | chr4.1:33826608-33826627 | None:intergenic | 30.0% | |
| CTGACAGTTTATTTACAGAT+TGG | + | chr4.1:33827426-33827445 | MS.gene056405:intron | 30.0% | |
| GCATCAATCTCATTCAAAAT+TGG | - | chr4.1:33826159-33826178 | None:intergenic | 30.0% | |
| GTAGACATTAATCACAGTTA+AGG | - | chr4.1:33825504-33825523 | None:intergenic | 30.0% | |
| TAATCCTTTCAAAGACTAAC+TGG | + | chr4.1:33827106-33827125 | MS.gene056405:intron | 30.0% | |
| TCAGTACCTGATATTGATAT+AGG | + | chr4.1:33826299-33826318 | MS.gene056405:intron | 30.0% | |
| TGAAAGGATTATCAAACACT+AGG | - | chr4.1:33827097-33827116 | None:intergenic | 30.0% | |
| TGAATCAGGTTTACAATACA+AGG | + | chr4.1:33826016-33826035 | MS.gene056405:CDS | 30.0% | |
| TGACAACATAATGGTGTAAA+AGG | + | chr4.1:33827375-33827394 | MS.gene056405:intron | 30.0% | |
| TTTATCACCTGATATCTCAT+CGG | - | chr4.1:33827140-33827159 | None:intergenic | 30.0% | |
| ! | AATGTGCATTGACAACATAA+TGG | + | chr4.1:33827366-33827385 | MS.gene056405:intron | 30.0% |
| ! | ACTGAGTATTTTATGCATGA+AGG | + | chr4.1:33825977-33825996 | MS.gene056405:intron | 30.0% |
| ! | CTTTAGCTAGTTTAGATTGA+AGG | - | chr4.1:33826400-33826419 | None:intergenic | 30.0% |
| ! | GGTACTGAAATCATCAATAT+TGG | - | chr4.1:33826287-33826306 | None:intergenic | 30.0% |
| ! | TTCAGTATTTTCTACGTAGA+AGG | - | chr4.1:33826264-33826283 | None:intergenic | 30.0% |
| ! | TTTCCAATTTTACAGCTCAT+TGG | + | chr4.1:33826990-33827009 | MS.gene056405:intron | 30.0% |
| ! | TTTCTGTCATCTTTCGATTT+TGG | + | chr4.1:33826870-33826889 | MS.gene056405:intron | 30.0% |
| ! | TTTTCATGTGCTTATCTGAT+AGG | + | chr4.1:33826556-33826575 | MS.gene056405:intron | 30.0% |
| !! | AATACCAGTTAGTCTTTGAA+AGG | - | chr4.1:33827113-33827132 | None:intergenic | 30.0% |
| !! | CATTGACTGCATTTTTGAAA+TGG | - | chr4.1:33826136-33826155 | None:intergenic | 30.0% |
| !! | GTCAATGCACATTTTAAGTA+TGG | - | chr4.1:33827359-33827378 | None:intergenic | 30.0% |
| !!! | AATTTTGGTTTTTCTTCTGG+TGG | - | chr4.1:33825415-33825434 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGCTGTTGTCTTT+GGG | + | chr4.1:33826893-33826912 | MS.gene056405:intron | 30.0% |
| AAGAAAGTCTCTACGTGAAT+TGG | - | chr4.1:33825326-33825345 | None:intergenic | 35.0% | |
| AAGGATATTAAAGTTGGGCA+AGG | + | chr4.1:33826035-33826054 | MS.gene056405:CDS | 35.0% | |
| AAGTGAAAGGACTTACAAAG+TGG | - | chr4.1:33825090-33825109 | None:intergenic | 35.0% | |
| AATTCACGTAGAGACTTTCT+TGG | + | chr4.1:33825325-33825344 | MS.gene056405:CDS | 35.0% | |
| ACGAAAGGACTTCCATTATA+AGG | + | chr4.1:33825734-33825753 | MS.gene056405:intron | 35.0% | |
| AGTTTAGATTGAAGGAAGCA+AGG | - | chr4.1:33826392-33826411 | None:intergenic | 35.0% | |
| ATACAACAGCAAACATCACT+TGG | - | chr4.1:33826688-33826707 | None:intergenic | 35.0% | |
| ATCACAGTTAAGGCATAGAA+AGG | - | chr4.1:33825494-33825513 | None:intergenic | 35.0% | |
| CATTAGCAGCATCAAATGAA+TGG | - | chr4.1:33825381-33825400 | None:intergenic | 35.0% | |
| CATTCATTTGATGCTGCTAA+TGG | + | chr4.1:33825379-33825398 | MS.gene056405:CDS | 35.0% | |
| CTCTTAAAACGTTTGACGAA+AGG | + | chr4.1:33825719-33825738 | MS.gene056405:intron | 35.0% | |
| GTGATAAAAGGACTTGATGA+AGG | + | chr4.1:33827152-33827171 | MS.gene056405:CDS | 35.0% | |
| TCAAATACTACTGGACTGTT+TGG | - | chr4.1:33827556-33827575 | None:intergenic | 35.0% | |
| TCACACTCCAACATCTTATT+AGG | - | chr4.1:33826747-33826766 | None:intergenic | 35.0% | |
| TCACAGTTAAGGCATAGAAA+GGG | - | chr4.1:33825493-33825512 | None:intergenic | 35.0% | |
| TCTCCAATGAGCTGTAAAAT+TGG | - | chr4.1:33826996-33827015 | None:intergenic | 35.0% | |
| TGACAGAAATTTGTAATCGG+CGG | - | chr4.1:33826635-33826654 | None:intergenic | 35.0% | |
| TGAGGAAAAGAGAAAGTGAA+AGG | - | chr4.1:33825103-33825122 | None:intergenic | 35.0% | |
| TGTATGCACTGTAATGAGAA+TGG | + | chr4.1:33826941-33826960 | MS.gene056405:intron | 35.0% | |
| TTATCACCTGATATCTCATC+GGG | - | chr4.1:33827139-33827158 | None:intergenic | 35.0% | |
| TTATGCATTGTTGGATAGTG+AGG | - | chr4.1:33825121-33825140 | None:intergenic | 35.0% | |
| TTCTCAACAGAAATGCTTTG+AGG | - | chr4.1:33825232-33825251 | None:intergenic | 35.0% | |
| ! | GTAAGTTTGGAATATGTACC+AGG | + | chr4.1:33827577-33827596 | MS.gene056405:CDS | 35.0% |
| ! | TTTTACAGCTCATTGGAGAA+AGG | + | chr4.1:33826997-33827016 | MS.gene056405:intron | 35.0% |
| ! | TTTTGAGCATGAAAGTAGGA+GGG | + | chr4.1:33827177-33827196 | MS.gene056405:CDS | 35.0% |
| !! | GACTTTCTTGGATTAGCATT+AGG | + | chr4.1:33825337-33825356 | MS.gene056405:CDS | 35.0% |
| !! | GTGTACTTCTAGTTTCTCAA+TGG | + | chr4.1:33827323-33827342 | MS.gene056405:intron | 35.0% |
| !! | GTTTTGAATCTTGCAATGCT+GGG | - | chr4.1:33827265-33827284 | None:intergenic | 35.0% |
| !! | TGTTTTGAATCTTGCAATGC+TGG | - | chr4.1:33827266-33827285 | None:intergenic | 35.0% |
| !! | TTCTTTTCTTGTTTCGCAGT+TGG | + | chr4.1:33827483-33827502 | MS.gene056405:intron | 35.0% |
| !! | TTTATGCATGAAGGTACCTA+TGG | + | chr4.1:33825986-33826005 | MS.gene056405:intron | 35.0% |
| !!! | GTTTTTGAAGCTGTTGTCTT+TGG | + | chr4.1:33826892-33826911 | MS.gene056405:intron | 35.0% |
| !!! | TGACTGCATTTTTGAAATGG+TGG | - | chr4.1:33826133-33826152 | None:intergenic | 35.0% |
| AACAATACACATGCTGACAG+AGG | - | chr4.1:33826512-33826531 | None:intergenic | 40.0% | |
| ACTGAACAAAGCTTCTGTCA+GGG | - | chr4.1:33825853-33825872 | None:intergenic | 40.0% | |
| ATTCAACCCGATGAGATATC+AGG | + | chr4.1:33827130-33827149 | MS.gene056405:intron | 40.0% | |
| CAACGCGAAAAATGTAAAGC+TGG | - | chr4.1:33827023-33827042 | None:intergenic | 40.0% | |
| CCTATGGTAACTACTGAATC+AGG | + | chr4.1:33826002-33826021 | MS.gene056405:CDS | 40.0% | |
| CCTGATTCAGTAGTTACCAT+AGG | - | chr4.1:33826005-33826024 | None:intergenic | 40.0% | |
| CTCCTACTTTCATGCTCAAA+AGG | - | chr4.1:33827178-33827197 | None:intergenic | 40.0% | |
| GGCTGCTAATTATGTTGCAA+TGG | + | chr4.1:33826580-33826599 | MS.gene056405:CDS | 40.0% | |
| TAGATTGAAGGAAGCAAGGA+CGG | - | chr4.1:33826388-33826407 | None:intergenic | 40.0% | |
| TATGTTGCAATGGTTCCATC+TGG | + | chr4.1:33826590-33826609 | MS.gene056405:CDS | 40.0% | |
| TCATGTGCTTATCTGATAGG+TGG | + | chr4.1:33826559-33826578 | MS.gene056405:intron | 40.0% | |
| TTACACACCTGATATCCAAC+TGG | - | chr4.1:33826071-33826090 | None:intergenic | 40.0% | |
| ! | AGCTTCTGTCAGGGAATTTT+TGG | - | chr4.1:33825844-33825863 | None:intergenic | 40.0% |
| ! | CAGCTTTACATTTTTCGCGT+TGG | + | chr4.1:33827021-33827040 | MS.gene056405:CDS | 40.0% |
| ! | CTTTTGAGCATGAAAGTAGG+AGG | + | chr4.1:33827176-33827195 | MS.gene056405:CDS | 40.0% |
| ! | TACATTTTTCGCGTTGGATC+TGG | + | chr4.1:33827027-33827046 | MS.gene056405:CDS | 40.0% |
| AAAGGCCTTAATTCTGCACC+AGG | + | chr4.1:33827514-33827533 | MS.gene056405:CDS | 45.0% | |
| AAGTGAAGTCCACAGAGACA+AGG | + | chr4.1:33825272-33825291 | MS.gene056405:CDS | 45.0% | |
| AGACAGAAGCTTACTGATCC+AGG | - | chr4.1:33827221-33827240 | None:intergenic | 45.0% | |
| AGATTGAAGGAAGCAAGGAC+GGG | - | chr4.1:33826387-33826406 | None:intergenic | 45.0% | |
| AGGACTTACAAAGTGGAAGC+AGG | - | chr4.1:33825083-33825102 | None:intergenic | 45.0% | |
| AGTGAAGTCCACAGAGACAA+GGG | + | chr4.1:33825273-33825292 | MS.gene056405:CDS | 45.0% | |
| ATATGTACCAGGACTTGACG+TGG | + | chr4.1:33827588-33827607 | MS.gene056405:CDS | 45.0% | |
| CACTGAACAAAGCTTCTGTC+AGG | - | chr4.1:33825854-33825873 | None:intergenic | 45.0% | |
| GCGTTCAAGAGAAACTGAAC+AGG | - | chr4.1:33826104-33826123 | None:intergenic | 45.0% | |
| GGTGCAGAATTAAGGCCTTT+AGG | - | chr4.1:33827514-33827533 | None:intergenic | 45.0% | |
| GTCTTCCTGGTGCAGAATTA+AGG | - | chr4.1:33827522-33827541 | None:intergenic | 45.0% | |
| TACAAAGTGGAAGCAGGAGA+GGG | - | chr4.1:33825077-33825096 | None:intergenic | 45.0% | |
| TAGTCCACCAGTTGGATATC+AGG | + | chr4.1:33826061-33826080 | MS.gene056405:CDS | 45.0% | |
| TCGCAGTTGGCATTTCCTAA+AGG | + | chr4.1:33827496-33827515 | MS.gene056405:intron | 45.0% | |
| TGAAAGTAGGAGGGAAACGT+CGG | + | chr4.1:33827186-33827205 | MS.gene056405:CDS | 45.0% | |
| TTACAAAGTGGAAGCAGGAG+AGG | - | chr4.1:33825078-33825097 | None:intergenic | 45.0% | |
| TTGAAGGTGACACAACTGCA+TGG | - | chr4.1:33825559-33825578 | None:intergenic | 45.0% | |
| TTTGATGCTGCTAATGGAGC+TGG | + | chr4.1:33825385-33825404 | MS.gene056405:CDS | 45.0% | |
| ! | CTTTGAGGAGCAGTAAGAGA+AGG | - | chr4.1:33825217-33825236 | None:intergenic | 45.0% |
| ! | GGCCTTTTGAGCATGAAAGT+AGG | + | chr4.1:33827173-33827192 | MS.gene056405:CDS | 45.0% |
| !! | CTGACAGAAGCTTTGTTCAG+TGG | + | chr4.1:33825852-33825871 | MS.gene056405:intron | 45.0% |
| !! | GATATCCAACTGGTGGACTA+GGG | - | chr4.1:33826061-33826080 | None:intergenic | 45.0% |
| !! | TGATATCCAACTGGTGGACT+AGG | - | chr4.1:33826062-33826081 | None:intergenic | 45.0% |
| ACAAAGTGGAAGCAGGAGAG+GGG | - | chr4.1:33825076-33825095 | None:intergenic | 50.0% | |
| AGTGCATTCCCTTGTCTCTG+TGG | - | chr4.1:33825284-33825303 | None:intergenic | 50.0% | |
| ATTCTGCACCAGGAAGACCA+AGG | + | chr4.1:33827524-33827543 | MS.gene056405:CDS | 50.0% | |
| CACACCTGATATCCAACTGG+TGG | - | chr4.1:33826068-33826087 | None:intergenic | 50.0% | |
| GGAAAGGGTCATACTCACAC+AGG | - | chr4.1:33826975-33826994 | None:intergenic | 50.0% | |
| TTCTGCACCAGGAAGACCAA+GGG | + | chr4.1:33827525-33827544 | MS.gene056405:CDS | 50.0% | |
| ! | AAACGTCGGCTGTACATACC+TGG | + | chr4.1:33827200-33827219 | MS.gene056405:CDS | 50.0% |
| ! | TTTTCGCGTTGGATCTGGTC+AGG | + | chr4.1:33827032-33827051 | MS.gene056405:CDS | 50.0% |
| ACCAGGACTTGACGTGGATG+AGG | + | chr4.1:33827594-33827613 | MS.gene056405:CDS | 55.0% | |
| TCCTCATCCACGTCAAGTCC+TGG | - | chr4.1:33827598-33827617 | None:intergenic | 55.0% | |
| AGGAGAGGGGAAGCCATGCT+AGG | - | chr4.1:33825063-33825082 | None:intergenic | 60.0% | |
| CAAGGCCCTAGTCCACCAGT+TGG | + | chr4.1:33826053-33826072 | MS.gene056405:CDS | 60.0% | |
| TGCACCAGGAAGACCAAGGG+TGG | + | chr4.1:33827528-33827547 | MS.gene056405:CDS | 60.0% | |
| ! | GGACTGTTTGGAGCCACCCT+TGG | - | chr4.1:33827544-33827563 | None:intergenic | 60.0% |
| ! | GGAGCCACCCTTGGTCTTCC+TGG | - | chr4.1:33827535-33827554 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33825057 | 33827621 | 33825057 | ID=MS.gene056405 |
| chr4.1 | mRNA | 33825057 | 33827621 | 33825057 | ID=MS.gene056405.t1;Parent=MS.gene056405 |
| chr4.1 | exon | 33825057 | 33825093 | 33825057 | ID=MS.gene056405.t1.exon1;Parent=MS.gene056405.t1 |
| chr4.1 | CDS | 33825057 | 33825093 | 33825057 | ID=cds.MS.gene056405.t1;Parent=MS.gene056405.t1 |
| chr4.1 | exon | 33825194 | 33825468 | 33825194 | ID=MS.gene056405.t1.exon2;Parent=MS.gene056405.t1 |
| chr4.1 | CDS | 33825194 | 33825468 | 33825194 | ID=cds.MS.gene056405.t1;Parent=MS.gene056405.t1 |
| chr4.1 | exon | 33825999 | 33826082 | 33825999 | ID=MS.gene056405.t1.exon3;Parent=MS.gene056405.t1 |
| chr4.1 | CDS | 33825999 | 33826082 | 33825999 | ID=cds.MS.gene056405.t1;Parent=MS.gene056405.t1 |
| chr4.1 | exon | 33826578 | 33826627 | 33826578 | ID=MS.gene056405.t1.exon4;Parent=MS.gene056405.t1 |
| chr4.1 | CDS | 33826578 | 33826627 | 33826578 | ID=cds.MS.gene056405.t1;Parent=MS.gene056405.t1 |
| chr4.1 | exon | 33827005 | 33827053 | 33827005 | ID=MS.gene056405.t1.exon5;Parent=MS.gene056405.t1 |
| chr4.1 | CDS | 33827005 | 33827053 | 33827005 | ID=cds.MS.gene056405.t1;Parent=MS.gene056405.t1 |
| chr4.1 | exon | 33827152 | 33827226 | 33827152 | ID=MS.gene056405.t1.exon6;Parent=MS.gene056405.t1 |
| chr4.1 | CDS | 33827152 | 33827226 | 33827152 | ID=cds.MS.gene056405.t1;Parent=MS.gene056405.t1 |
| chr4.1 | exon | 33827502 | 33827621 | 33827502 | ID=MS.gene056405.t1.exon7;Parent=MS.gene056405.t1 |
| chr4.1 | CDS | 33827502 | 33827621 | 33827502 | ID=cds.MS.gene056405.t1;Parent=MS.gene056405.t1 |
| Gene Sequence |
| Protein sequence |
