AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28626

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28626.t1 MTR_7g110810 86.139 404 22 6 1 401 1 373 0.0 661
MS.gene28626.t1 MTR_1g084980 46.746 169 61 4 166 330 409 552 2.29e-33 132
MS.gene28626.t1 MTR_1g069155 57.778 90 33 1 222 311 308 392 5.84e-26 110
MS.gene28626.t1 MTR_7g111320 38.095 231 89 8 166 371 379 580 1.88e-25 108
MS.gene28626.t1 MTR_7g099540 60.714 84 27 2 228 311 250 327 4.80e-24 103
MS.gene28626.t1 MTR_3g449770 44.915 118 58 3 221 337 300 411 8.05e-23 100
MS.gene28626.t1 MTR_7g099540 56.667 90 27 3 228 311 250 333 7.42e-22 97.4
MS.gene28626.t1 MTR_1g019240 56.098 82 34 2 212 293 68 147 6.23e-20 89.4
MS.gene28626.t1 MTR_5g017040 56.716 67 29 0 240 306 114 180 1.25e-18 86.7
MS.gene28626.t1 MTR_4g131160 55.357 56 25 0 242 297 207 262 1.30e-15 78.2
MS.gene28626.t1 MTR_4g131160 55.357 56 25 0 242 297 210 265 1.42e-15 78.2
MS.gene28626.t1 MTR_1g080890 51.786 56 27 0 242 297 204 259 9.57e-15 75.5
MS.gene28626.t1 MTR_1g084980 42.202 109 43 2 166 270 409 501 3.15e-14 74.7
MS.gene28626.t1 MTR_3g103030 36.735 98 53 2 228 323 224 314 8.05e-13 69.3
MS.gene28626.t1 MTR_1g017350 46.970 66 34 1 242 306 271 336 1.68e-12 68.9
MS.gene28626.t1 MTR_1g017350 46.970 66 34 1 242 306 271 336 1.74e-12 68.9
MS.gene28626.t1 MTR_1g017350 46.970 66 34 1 242 306 271 336 1.84e-12 68.9
MS.gene28626.t1 MTR_1g017350 46.970 66 34 1 242 306 271 336 1.99e-12 68.9
MS.gene28626.t1 MTR_1g106460 35.065 77 43 1 247 323 254 323 6.35e-12 66.6
MS.gene28626.t1 MTR_8g012290 28.421 190 122 5 119 295 168 356 1.37e-11 66.2
MS.gene28626.t1 MTR_8g012290 28.421 190 122 5 119 295 168 356 1.42e-11 66.2
MS.gene28626.t1 MTR_3g116770 36.111 108 60 3 242 340 202 309 2.15e-11 65.5
MS.gene28626.t1 MTR_3g116770 36.111 108 60 3 242 340 202 309 2.18e-11 65.5
MS.gene28626.t1 MTR_5g048860 35.652 115 59 3 242 341 376 490 3.06e-11 65.5
MS.gene28626.t1 MTR_0246s0020 45.588 68 37 0 226 293 183 250 3.41e-11 64.7
MS.gene28626.t1 MTR_0246s0020 45.588 68 37 0 226 293 183 250 3.72e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28626.t1 AT1G09530 38.750 240 110 9 71 302 198 408 2.49e-30 122
MS.gene28626.t1 AT1G09530 38.750 240 110 9 71 302 198 408 2.49e-30 122
MS.gene28626.t1 AT1G09530 38.750 240 110 9 71 302 198 408 2.49e-30 122
MS.gene28626.t1 AT1G09530 38.750 240 110 9 71 302 198 408 2.49e-30 122
MS.gene28626.t1 AT1G09530 38.750 240 110 9 71 302 198 408 2.49e-30 122
MS.gene28626.t1 AT1G09530 38.750 240 110 9 71 302 198 408 2.49e-30 122
MS.gene28626.t1 AT2G46970 41.317 167 85 5 212 377 179 333 3.06e-28 114
MS.gene28626.t1 AT2G46970 41.317 167 85 5 212 377 188 342 4.32e-28 114
MS.gene28626.t1 AT2G46970 41.317 167 85 5 212 377 210 364 4.86e-28 114
MS.gene28626.t1 AT2G20180 40.719 167 82 4 214 375 190 344 3.02e-27 112
MS.gene28626.t1 AT2G20180 40.719 167 82 4 214 375 190 344 3.02e-27 112
MS.gene28626.t1 AT2G20180 40.719 167 82 4 214 375 190 344 3.02e-27 112
MS.gene28626.t1 AT2G20180 40.361 166 84 3 214 375 261 415 1.43e-26 111
MS.gene28626.t1 AT2G20180 40.361 166 84 3 214 375 261 415 1.43e-26 111
MS.gene28626.t1 AT2G20180 40.361 166 84 3 214 375 261 415 1.43e-26 111
MS.gene28626.t1 AT2G20180 40.361 166 84 3 214 375 261 415 1.43e-26 111
MS.gene28626.t1 AT4G28800 42.975 121 59 4 229 345 247 361 3.07e-22 98.6
MS.gene28626.t1 AT2G20180 54.430 79 36 0 214 292 261 339 7.39e-22 96.3
MS.gene28626.t1 AT5G67110 45.045 111 57 3 222 329 79 188 2.67e-21 91.7
MS.gene28626.t1 AT3G59060 36.979 192 106 7 216 396 236 423 1.87e-20 93.2
MS.gene28626.t1 AT4G28790 40.441 136 67 4 214 345 255 380 2.69e-20 92.4
MS.gene28626.t1 AT3G59060 39.157 166 91 5 216 372 236 400 4.11e-20 92.0
MS.gene28626.t1 AT3G59060 39.157 166 91 5 216 372 236 400 4.11e-20 92.0
MS.gene28626.t1 AT3G59060 39.157 166 91 5 216 372 236 400 4.11e-20 92.0
MS.gene28626.t1 AT4G36930 57.746 71 25 1 237 302 197 267 2.40e-19 89.4
MS.gene28626.t1 AT4G28800 41.880 117 60 3 229 345 259 367 6.39e-19 88.6
MS.gene28626.t1 AT2G43010 68.333 60 19 0 234 293 254 313 1.77e-17 84.3
MS.gene28626.t1 AT2G43010 68.333 60 19 0 234 293 254 313 1.86e-17 84.3
MS.gene28626.t1 AT4G28815 42.857 91 35 2 229 319 66 139 2.08e-17 81.3
MS.gene28626.t1 AT2G43010 68.333 60 19 0 234 293 261 320 2.09e-17 84.0
MS.gene28626.t1 AT2G43010 68.333 60 19 0 234 293 254 313 2.16e-17 84.0
MS.gene28626.t1 AT3G62090 36.842 171 99 6 225 393 176 339 3.42e-17 82.8
MS.gene28626.t1 AT3G62090 38.562 153 84 6 225 375 159 303 3.51e-17 82.4
MS.gene28626.t1 AT2G43010 68.333 60 19 0 234 293 296 355 4.05e-17 83.2
MS.gene28626.t1 AT4G00050 43.590 117 63 2 180 294 53 168 4.59e-17 81.6
MS.gene28626.t1 AT4G28815 42.857 91 35 2 229 319 142 215 7.16e-17 81.3
MS.gene28626.t1 AT2G24260 57.143 56 24 0 242 297 46 101 7.72e-17 80.1
MS.gene28626.t1 AT4G00050 43.590 117 63 2 180 294 155 270 1.15e-16 81.6
MS.gene28626.t1 AT4G00050 43.590 117 63 2 180 294 155 270 1.50e-16 81.3
MS.gene28626.t1 AT2G24260 57.143 56 24 0 242 297 149 204 3.32e-16 79.7
MS.gene28626.t1 AT4G30980 55.357 56 25 0 242 297 141 196 8.65e-16 78.2
MS.gene28626.t1 AT4G28790 50.000 78 38 1 214 291 255 331 1.05e-15 78.2
MS.gene28626.t1 AT4G30980 55.357 56 25 0 242 297 189 244 1.72e-15 77.8
MS.gene28626.t1 AT5G58010 43.373 83 41 2 216 297 88 165 2.32e-15 76.6
MS.gene28626.t1 AT4G28811 47.778 90 42 2 209 294 326 414 5.12e-13 70.9
MS.gene28626.t1 AT5G61270 42.697 89 51 0 207 295 48 136 1.73e-12 67.8
MS.gene28626.t1 AT5G61270 42.697 89 51 0 207 295 48 136 1.73e-12 67.8
MS.gene28626.t1 AT1G10120 42.553 94 49 4 211 302 188 278 1.93e-12 68.6
MS.gene28626.t1 AT1G10120 42.553 94 49 4 211 302 188 278 1.93e-12 68.6
MS.gene28626.t1 AT5G61270 42.697 89 51 0 207 295 136 224 2.70e-12 68.2
MS.gene28626.t1 AT5G50915 39.326 89 52 2 217 303 121 209 3.77e-12 66.6
MS.gene28626.t1 AT5G50915 39.326 89 52 2 217 303 121 209 3.77e-12 66.6
MS.gene28626.t1 AT5G50915 39.326 89 52 2 217 303 121 209 5.13e-12 66.6
MS.gene28626.t1 AT5G50915 39.326 89 52 2 217 303 121 209 5.13e-12 66.6
MS.gene28626.t1 AT2G14760 31.667 120 66 4 209 324 218 325 9.13e-12 66.2
MS.gene28626.t1 AT1G02340 56.863 51 21 1 245 294 141 191 2.40e-11 64.7
MS.gene28626.t1 AT1G02340 56.863 51 21 1 245 294 134 184 2.69e-11 64.3
MS.gene28626.t1 AT5G43175 35.366 82 46 1 242 323 143 217 3.12e-11 63.2
MS.gene28626.t1 AT2G14760 33.333 87 49 2 240 324 259 338 3.71e-11 64.3
MS.gene28626.t1 AT4G36540 35.227 88 55 2 216 302 127 213 4.23e-11 63.9
MS.gene28626.t1 AT4G36540 35.227 88 55 2 216 302 127 213 4.36e-11 63.9
MS.gene28626.t1 AT1G26260 42.424 66 37 1 242 306 212 277 5.00e-11 64.3
MS.gene28626.t1 AT1G26260 42.424 66 37 1 242 306 183 248 5.83e-11 63.9
MS.gene28626.t1 AT1G26260 42.424 66 37 1 242 306 234 299 5.89e-11 64.3
MS.gene28626.t1 AT1G26260 42.424 66 37 1 242 306 234 299 5.89e-11 64.3
MS.gene28626.t1 AT1G26260 42.424 66 37 1 242 306 234 299 5.89e-11 64.3
MS.gene28626.t1 AT1G26260 42.424 66 37 1 242 306 234 299 5.89e-11 64.3

Find 75 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAACATTTGATGGGTTTC+AGG 0.156734 7.2:-4705329 MS.gene28626:CDS
TTTCTCTTTCCTCTAATTCT+AGG 0.178319 7.2:+4706323 None:intergenic
GACCCTCAAGCTTCAGTTAC+AGG 0.189644 7.2:-4705552 MS.gene28626:intron
TCACATACCTTATTGCAATT+TGG 0.224679 7.2:+4705732 None:intergenic
TTGACATGTGTGGTGGTAAT+TGG 0.291651 7.2:+4705220 None:intergenic
ACACCAACACCAACCTCTTT+TGG 0.299511 7.2:-4705150 MS.gene28626:CDS
CCTTTCATTCCTCCTATCAT+TGG 0.324461 7.2:-4705186 MS.gene28626:CDS
GTTACATCATCACTTAAATA+TGG 0.340356 7.2:+4706185 None:intergenic
ATGTCCTTCCAGGTTGATTC+TGG 0.340577 7.2:+4705124 None:intergenic
GACTAGCCACATGTCCTTCC+AGG 0.347583 7.2:+4705114 None:intergenic
ACCAATGCACCTAGAATTAG+AGG 0.347789 7.2:-4706332 MS.gene28626:CDS
CCATCACCCATTTGTGGAAT+AGG 0.357478 7.2:+4705291 None:intergenic
AACATCATAAAATGATTAAC+TGG 0.360190 7.2:+4705396 None:intergenic
TTCATATGCAGAGTTTGATT+TGG 0.364667 7.2:+4706412 None:intergenic
TGTGAGTACTATTCTTACTT+TGG 0.374808 7.2:+4706684 None:intergenic
TATTTAAGTGATGATGTAAC+TGG 0.377845 7.2:-4706182 MS.gene28626:CDS
GTTTGGTTTGAATCCAATCT+TGG 0.379031 7.2:+4706632 None:intergenic
AACGACAGAGTTCAGATGTT+TGG 0.380475 7.2:-4705252 MS.gene28626:CDS
TATGAATGCACAACATTTGA+TGG 0.383363 7.2:-4705337 MS.gene28626:CDS
GTGAGTACTATTCTTACTTT+GGG 0.386165 7.2:+4706685 None:intergenic
ACAGTTTCCTATTCCACAAA+TGG 0.388703 7.2:-4705298 MS.gene28626:CDS
TCCTCTAATTCTAGGTGCAT+TGG 0.390333 7.2:+4706331 None:intergenic
GCTCATACCAAATTGCAATA+AGG 0.391698 7.2:-4705739 MS.gene28626:intron
GACGTTGCAGATTATGTCAA+TGG 0.409902 7.2:-4705436 MS.gene28626:intron
ACCAAAGTTTAGATCATTTG+AGG 0.426290 7.2:+4706241 None:intergenic
GTGAGTTTGTTGTTGCAGTT+TGG 0.430149 7.2:+4706615 None:intergenic
AATTCATAATTTATCTGAAA+GGG 0.436637 7.2:-4705912 MS.gene28626:intron
GCCTCAAATGATCTAAACTT+TGG 0.436672 7.2:-4706242 MS.gene28626:CDS
TTGATTCTGGTTACCAAAAG+AGG 0.453744 7.2:+4705137 None:intergenic
ACTCTGTTTCCATTATGAGC+TGG 0.454011 7.2:+4705959 None:intergenic
CTCACAGAAACAGTACTTGA+TGG 0.454187 7.2:-4706597 MS.gene28626:CDS
AAAGAAAAGCCAGCTCATAA+TGG 0.458159 7.2:-4705968 MS.gene28626:CDS
AGGAGGAATGAAAGGTGCAT+TGG 0.466560 7.2:+4705194 None:intergenic
GGAGGAATGAAAGGTGCATT+GGG 0.473309 7.2:+4705195 None:intergenic
TACAAACGTAAAATAGCATA+TGG 0.474481 7.2:+4706148 None:intergenic
GTGGAAGAGTTTCCAATGAT+AGG 0.480699 7.2:+4705174 None:intergenic
TACCTGTAACTGAAGCTTGA+GGG 0.481997 7.2:+4705550 None:intergenic
GTGACACCATCACCCATTTG+TGG 0.484725 7.2:+4705285 None:intergenic
CAGTTTCCTATTCCACAAAT+GGG 0.491361 7.2:-4705297 MS.gene28626:CDS
TAATTCTAGGTGCATTGGTA+TGG 0.508040 7.2:+4706336 None:intergenic
TGAAGAAACACAAGAAAATA+CGG 0.510993 7.2:-4705993 MS.gene28626:CDS
TGGTGTTAGAAAATCATATG+AGG 0.518657 7.2:-4706222 MS.gene28626:CDS
ATGACAAGAAGCAATGGCTT+AGG 0.523118 7.2:-4706734 MS.gene28626:CDS
TCAAGTGAGCATACAGAAGA+TGG 0.531560 7.2:+4706266 None:intergenic
ACAGAGTCAAGAGAAGCTAC+AGG 0.536275 7.2:-4705943 MS.gene28626:CDS
TCACAGAAACAGTACTTGAT+GGG 0.539019 7.2:-4706596 MS.gene28626:CDS
ATGAATGCACAACATTTGAT+GGG 0.539585 7.2:-4705336 MS.gene28626:CDS
AAATTCATAATTTATCTGAA+AGG 0.542829 7.2:-4705913 MS.gene28626:CDS
ACGTTGCAGATTATGTCAAT+GGG 0.542904 7.2:-4705435 MS.gene28626:intron
AGTACTATTCTTACTTTGGG+AGG 0.546973 7.2:+4706688 None:intergenic
GGAATAGGAAACTGTATTTG+TGG 0.547372 7.2:+4705306 None:intergenic
CATGTGTGGTGGTAATTGGT+TGG 0.548002 7.2:+4705224 None:intergenic
AGAGGTTGGTGTTGGTGTGG+TGG 0.551444 7.2:+4705155 None:intergenic
TTCATGTTCATATGATGTGC+GGG 0.552429 7.2:+4705372 None:intergenic
CCTATTCCACAAATGGGTGA+TGG 0.561913 7.2:-4705291 MS.gene28626:CDS
TTCTGGTTACCAAAAGAGGT+TGG 0.567323 7.2:+4705141 None:intergenic
TCAGAATGTTCATCAACGGT+TGG 0.575923 7.2:+4706371 None:intergenic
AGCTTCAGAATGTTCATCAA+CGG 0.575933 7.2:+4706367 None:intergenic
TTTGGTAACCAGAATCAACC+TGG 0.577623 7.2:-4705132 MS.gene28626:CDS
TTACCTGTAACTGAAGCTTG+AGG 0.590352 7.2:+4705549 None:intergenic
ACTTAAATATGGAGAGTCAT+CGG 0.599086 7.2:+4706196 None:intergenic
ATTCATGTTCATATGATGTG+CGG 0.605271 7.2:+4705371 None:intergenic
CCAATGATAGGAGGAATGAA+AGG 0.605339 7.2:+4705186 None:intergenic
AGGTGCATTGGTATGGCTAG+AGG 0.613493 7.2:+4706343 None:intergenic
GTTGATTTAAGAAACACTGC+AGG 0.614456 7.2:+4706524 None:intergenic
TCAGAGATGACAAGAAGCAA+TGG 0.621101 7.2:-4706740 MS.gene28626:CDS
GGAATGAAAATCACTGTGAG+AGG 0.626133 7.2:+4706709 None:intergenic
GAAGAGTTTCCAATGATAGG+AGG 0.626184 7.2:+4705177 None:intergenic
TTACCAAAAGAGGTTGGTGT+TGG 0.647408 7.2:+4705147 None:intergenic
CACAGAAACAGTACTTGATG+GGG 0.651724 7.2:-4706595 MS.gene28626:CDS
GTAACCAGAATCAACCTGGA+AGG 0.666181 7.2:-4705128 MS.gene28626:CDS
AAAAGAGGTTGGTGTTGGTG+TGG 0.666327 7.2:+4705152 None:intergenic
AATCAACCTGGAAGGACATG+TGG 0.668906 7.2:-4705120 MS.gene28626:CDS
TTGGGAATTGACATGTGTGG+TGG 0.729000 7.2:+4705213 None:intergenic
GCATTGGGAATTGACATGTG+TGG 0.733578 7.2:+4705210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATAATTTATCTGAA+AGG - chr7.2:4705961-4705980 MS.gene28626:CDS 15.0%
!! AATTCATAATTTATCTGAAA+GGG - chr7.2:4705962-4705981 MS.gene28626:CDS 15.0%
!! AACATCATAAAATGATTAAC+TGG + chr7.2:4706481-4706500 None:intergenic 20.0%
!! ATTGTTGCATAGAAAATTTA+AGG + chr7.2:4706361-4706380 None:intergenic 20.0%
! AATAAAGTTCAACTTCAACA+AGG + chr7.2:4706203-4706222 None:intergenic 25.0%
! GTTACATCATCACTTAAATA+TGG + chr7.2:4705692-4705711 None:intergenic 25.0%
! TACAAACGTAAAATAGCATA+TGG + chr7.2:4705729-4705748 None:intergenic 25.0%
! TGAAGAAACACAAGAAAATA+CGG - chr7.2:4705881-4705900 MS.gene28626:intron 25.0%
!! TATTTAAGTGATGATGTAAC+TGG - chr7.2:4705692-4705711 MS.gene28626:intron 25.0%
!!! TGCTTTGTTTTTGTTATAGA+TGG - chr7.2:4706259-4706278 MS.gene28626:CDS 25.0%
ACCAAAGTTTAGATCATTTG+AGG + chr7.2:4705636-4705655 None:intergenic 30.0%
ACTTAAATATGGAGAGTCAT+CGG + chr7.2:4705681-4705700 None:intergenic 30.0%
ATAATTTATCTGAAAGGGTG+AGG - chr7.2:4705967-4705986 MS.gene28626:CDS 30.0%
ATGAATGCACAACATTTGAT+GGG - chr7.2:4706538-4706557 MS.gene28626:CDS 30.0%
ATTCATGTTCATATGATGTG+CGG + chr7.2:4706506-4706525 None:intergenic 30.0%
GGGTGTGAATATCAAAAAAA+TGG - chr7.2:4705299-4705318 MS.gene28626:CDS 30.0%
GTGAGTACTATTCTTACTTT+GGG + chr7.2:4705192-4705211 None:intergenic 30.0%
TATGAATGCACAACATTTGA+TGG - chr7.2:4706537-4706556 MS.gene28626:CDS 30.0%
TCACATACCTTATTGCAATT+TGG + chr7.2:4706145-4706164 None:intergenic 30.0%
TGTGAGTACTATTCTTACTT+TGG + chr7.2:4705193-4705212 None:intergenic 30.0%
TTCATATGCAGAGTTTGATT+TGG + chr7.2:4705465-4705484 None:intergenic 30.0%
TTTCTCTTTCCTCTAATTCT+AGG + chr7.2:4705554-4705573 None:intergenic 30.0%
! TGGTGTTAGAAAATCATATG+AGG - chr7.2:4705652-4705671 MS.gene28626:intron 30.0%
!! CTTCTTTTGATTCTTTCTCT+TGG + chr7.2:4705391-4705410 None:intergenic 30.0%
AAAGAAAAGCCAGCTCATAA+TGG - chr7.2:4705906-4705925 MS.gene28626:intron 35.0%
ACAGTTTCCTATTCCACAAA+TGG - chr7.2:4706576-4706595 MS.gene28626:CDS 35.0%
ACGTTGCAGATTATGTCAAT+GGG - chr7.2:4706439-4706458 MS.gene28626:CDS 35.0%
AGCTTCAGAATGTTCATCAA+CGG + chr7.2:4705510-4705529 None:intergenic 35.0%
AGTACTATTCTTACTTTGGG+AGG + chr7.2:4705189-4705208 None:intergenic 35.0%
ATCAAGCTTCGTAAGAATGA+TGG + chr7.2:4705840-4705859 None:intergenic 35.0%
CAGTTTCCTATTCCACAAAT+GGG - chr7.2:4706577-4706596 MS.gene28626:CDS 35.0%
GCCTCAAATGATCTAAACTT+TGG - chr7.2:4705632-4705651 MS.gene28626:intron 35.0%
GCTCATACCAAATTGCAATA+AGG - chr7.2:4706135-4706154 MS.gene28626:intron 35.0%
GGAATAGGAAACTGTATTTG+TGG + chr7.2:4706571-4706590 None:intergenic 35.0%
TCACAGAAACAGTACTTGAT+GGG - chr7.2:4705278-4705297 MS.gene28626:CDS 35.0%
TCCTCTCAAAAAACCAAGAT+TGG - chr7.2:4705229-4705248 MS.gene28626:CDS 35.0%
TTCATGTTCATATGATGTGC+GGG + chr7.2:4706505-4706524 None:intergenic 35.0%
! GTTGATTTAAGAAACACTGC+AGG + chr7.2:4705353-4705372 None:intergenic 35.0%
! TAATTCTAGGTGCATTGGTA+TGG + chr7.2:4705541-4705560 None:intergenic 35.0%
! TTGATTCTGGTTACCAAAAG+AGG + chr7.2:4706740-4706759 None:intergenic 35.0%
!! GTTTGGTTTGAATCCAATCT+TGG + chr7.2:4705245-4705264 None:intergenic 35.0%
!!! TCCAATCTTGGTTTTTTGAG+AGG + chr7.2:4705233-4705252 None:intergenic 35.0%
AACGACAGAGTTCAGATGTT+TGG - chr7.2:4706622-4706641 MS.gene28626:CDS 40.0%
ACCAATGCACCTAGAATTAG+AGG - chr7.2:4705542-4705561 MS.gene28626:intron 40.0%
ACTCTGTTTCCATTATGAGC+TGG + chr7.2:4705918-4705937 None:intergenic 40.0%
ATGACAAGAAGCAATGGCTT+AGG - chr7.2:4705140-4705159 MS.gene28626:CDS 40.0%
ATTGAAACTGTGTCTGTGTC+TGG + chr7.2:4705792-4705811 None:intergenic 40.0%
CACAGAAACAGTACTTGATG+GGG - chr7.2:4705279-4705298 MS.gene28626:CDS 40.0%
CCAATGATAGGAGGAATGAA+AGG + chr7.2:4706691-4706710 None:intergenic 40.0%
CCTTTCATTCCTCCTATCAT+TGG - chr7.2:4706688-4706707 MS.gene28626:CDS 40.0%
CTCACAGAAACAGTACTTGA+TGG - chr7.2:4705277-4705296 MS.gene28626:CDS 40.0%
GAAGAGTTTCCAATGATAGG+AGG + chr7.2:4706700-4706719 None:intergenic 40.0%
GACGTTGCAGATTATGTCAA+TGG - chr7.2:4706438-4706457 MS.gene28626:CDS 40.0%
GGAATGAAAATCACTGTGAG+AGG + chr7.2:4705168-4705187 None:intergenic 40.0%
GTGGAAGAGTTTCCAATGAT+AGG + chr7.2:4706703-4706722 None:intergenic 40.0%
TACCTGTAACTGAAGCTTGA+GGG + chr7.2:4706327-4706346 None:intergenic 40.0%
TCAAGTGAGCATACAGAAGA+TGG + chr7.2:4705611-4705630 None:intergenic 40.0%
TCAGAATGTTCATCAACGGT+TGG + chr7.2:4705506-4705525 None:intergenic 40.0%
TCAGAGATGACAAGAAGCAA+TGG - chr7.2:4705134-4705153 MS.gene28626:CDS 40.0%
TCCTCTAATTCTAGGTGCAT+TGG + chr7.2:4705546-4705565 None:intergenic 40.0%
TTACCTGTAACTGAAGCTTG+AGG + chr7.2:4706328-4706347 None:intergenic 40.0%
TTACTATGAAGCACGAACAC+TGG - chr7.2:4705754-4705773 MS.gene28626:CDS 40.0%
TTGACATGTGTGGTGGTAAT+TGG + chr7.2:4706657-4706676 None:intergenic 40.0%
! TTCTGGTTACCAAAAGAGGT+TGG + chr7.2:4706736-4706755 None:intergenic 40.0%
! TTTGGTAACCAGAATCAACC+TGG - chr7.2:4706742-4706761 MS.gene28626:CDS 40.0%
!! CACAACATTTGATGGGTTTC+AGG - chr7.2:4706545-4706564 MS.gene28626:CDS 40.0%
!! GTGAGTTTGTTGTTGCAGTT+TGG + chr7.2:4705262-4705281 None:intergenic 40.0%
!! TTACCAAAAGAGGTTGGTGT+TGG + chr7.2:4706730-4706749 None:intergenic 40.0%
AATCAACCTGGAAGGACATG+TGG - chr7.2:4706754-4706773 MS.gene28626:CDS 45.0%
ACAGAGTCAAGAGAAGCTAC+AGG - chr7.2:4705931-4705950 MS.gene28626:CDS 45.0%
CATGTGTGGTGGTAATTGGT+TGG + chr7.2:4706653-4706672 None:intergenic 45.0%
CCATCACCCATTTGTGGAAT+AGG + chr7.2:4706586-4706605 None:intergenic 45.0%
CCTATTCCACAAATGGGTGA+TGG - chr7.2:4706583-4706602 MS.gene28626:CDS 45.0%
GCATTGGGAATTGACATGTG+TGG + chr7.2:4706667-4706686 None:intergenic 45.0%
GTAACCAGAATCAACCTGGA+AGG - chr7.2:4706746-4706765 MS.gene28626:CDS 45.0%
TTGGGAATTGACATGTGTGG+TGG + chr7.2:4706664-4706683 None:intergenic 45.0%
! ACACCAACACCAACCTCTTT+TGG - chr7.2:4706724-4706743 MS.gene28626:CDS 45.0%
! AGGAGGAATGAAAGGTGCAT+TGG + chr7.2:4706683-4706702 None:intergenic 45.0%
! GGAGGAATGAAAGGTGCATT+GGG + chr7.2:4706682-4706701 None:intergenic 45.0%
!! AAAAGAGGTTGGTGTTGGTG+TGG + chr7.2:4706725-4706744 None:intergenic 45.0%
!! ATGTCCTTCCAGGTTGATTC+TGG + chr7.2:4706753-4706772 None:intergenic 45.0%
GACCCTCAAGCTTCAGTTAC+AGG - chr7.2:4706322-4706341 MS.gene28626:CDS 50.0%
GTGACACCATCACCCATTTG+TGG + chr7.2:4706592-4706611 None:intergenic 50.0%
! AGGTGCATTGGTATGGCTAG+AGG + chr7.2:4705534-4705553 None:intergenic 50.0%
!! AGAGGTTGGTGTTGGTGTGG+TGG + chr7.2:4706722-4706741 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4705116 4706780 4705116 ID=MS.gene28626
chr7.2 mRNA 4705116 4706780 4705116 ID=MS.gene28626.t1;Parent=MS.gene28626
chr7.2 exon 4706148 4706780 4706148 ID=MS.gene28626.t1.exon1;Parent=MS.gene28626.t1
chr7.2 CDS 4706148 4706780 4706148 ID=cds.MS.gene28626.t1;Parent=MS.gene28626.t1
chr7.2 exon 4705913 4706020 4705913 ID=MS.gene28626.t1.exon2;Parent=MS.gene28626.t1
chr7.2 CDS 4705913 4706020 4705913 ID=cds.MS.gene28626.t1;Parent=MS.gene28626.t1
chr7.2 exon 4705740 4705805 4705740 ID=MS.gene28626.t1.exon3;Parent=MS.gene28626.t1
chr7.2 CDS 4705740 4705805 4705740 ID=cds.MS.gene28626.t1;Parent=MS.gene28626.t1
chr7.2 exon 4705553 4705618 4705553 ID=MS.gene28626.t1.exon4;Parent=MS.gene28626.t1
chr7.2 CDS 4705553 4705618 4705553 ID=cds.MS.gene28626.t1;Parent=MS.gene28626.t1
chr7.2 exon 4705116 4705448 4705116 ID=MS.gene28626.t1.exon5;Parent=MS.gene28626.t1
chr7.2 CDS 4705116 4705448 4705116 ID=cds.MS.gene28626.t1;Parent=MS.gene28626.t1
Gene Sequence

>MS.gene28626

ATGTTTGATTCTAGCAACTCAGAGATGACAAGAAGCAATGGCTTAGGTTCCTCTCACAGTGATTTTCATTCCTCCCAAAGTAAGAATAGTACTCACATGTTCACATATTTAACTCCTCTCAAAAAACCAAGATTGGATTCAAACCAAACTGCAACAACAAACTCACAGAAACAGTACTTGATGGGGTGTGAATATCAAAAAAATGGAAAAGTGAACTTCTCAAACTTTTCTATACCTGCAGTGTTTCTTAAATCAACTCATCAACAAAGAGTCCAAGAGAAAGAATCAAAAGAAGTTGCTTCTACAAAATTTCAACAACAAAAACACTTAACTTTAAATGCTGCTACCAAATCAAACTCTGCATATGAAAGAAGTAGAGAATTACTACCAACCGTTGATGAACATTCTGAAGCTGCCTCTAGCCATACCAATGCACCTAGAATTAGAGGAAAGAGAAAAGCTAGTGCTATTAACTTATGTAATGCACGAGAACCATCTTCTGTATGCTCACTTGAAGCCTCAAATGATCTAAACTTTGGTGTTAGAAAATCATATGAGGACACCGATGACTCTCCATATTTAAGTGATGATGTAACTGGAATTCAAGAAACCATATGCTATTTTACGTTTGTAGTTAGTTACTATGAAGCACGAACACTGGACACGACACGTACCAGACACAGACACAGTTTCAATATGAAGTGTTATGTTATATTAGTTACCATCATTCTTACGAAGCTTGATTGATTTGATGTTGCAGAATGATGAAGAAACACAAGAAAATACGGTGAAAGAAAAGCCAGCTCATAATGGAAACAGAGTCAAGAGAAGCTACAGGAATGCAAAAATTCATAATTTATCTGAAAGGGTGAGGAACTTTAAAATGAGTTAAAAAAAATAAAAATAAATATTTGTATGTATTTCTGTATGCAATTTAATTTCATATAACTTATAAATATTTATTGATATTTTCAGAAGAGAAGAGATAAAATTAATGAGAAAATACGTGCATTGAAAGAGCTCATACCAAATTGCAATAAGGTATGTGAATATTAATTTATTTTGATTTTTGTAACAAGAAAGACCTTGTTGAAGTTGAACTTTATTTGTTTTAATTAATTAATTATATAAATATAAACGTTTTGCTTTGTTTTTGTTATAGATGGACAAAGCTTCGATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGGTAAAATTTTATGTCCTTAAATTTTCTATGCAACAATATTTAAATTGAGATTTCACTATATAATCTTATATTAAATATTAATTTTATGAATTATGACGTTGCAGATTATGTCAATGGGAAGAGCACTTTGTATGCCAGTTAATCATTTTATGATGTTACCCGCACATCATATGAACATGAATATGAATATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACAAATACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTACCACCACACATGTCAATTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCCACCACACCAACACCAACCTCTTTTGGTAACCAGAATCAACCTGGAAGGACATGTGGCTAG
Protein sequence

>MS.gene28626.t1

MFDSSNSEMTRSNGLGSSHSDFHSSQSKNSTHMFTYLTPLKKPRLDSNQTATTNSQKQYLMGCEYQKNGKVNFSNFSIPAVFLKSTHQQRVQEKESKEVASTKFQQQKHLTLNAATKSNSAYERSRELLPTVDEHSEAASSHTNAPRIRGKRKASAINLCNAREPSSVCSLEASNDLNFGVRKSYEDTDDSPYLSDDVTGIQETICYFTFVNDEETQENTVKEKPAHNGNRVKRSYRNAKIHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPVNHFMMLPAHHMNMNMNMNMNAQHLMGFRPQIQFPIPQMGDGVTNNNNDRVQMFGFSNQLPPHMSIPNAPFIPPIIGNSSTTPTPTSFGNQNQPGRTCG