Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050830.t1 | XP_003626080.1 | 78.8 | 377 | 21 | 6 | 1 | 322 | 1 | 373 | 4.30E-142 | 514.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050830.t1 | Q0JNI9 | 40.5 | 232 | 95 | 10 | 101 | 320 | 330 | 530 | 3.8e-22 | 107.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050830.t1 | G7KUN6 | 78.8 | 377 | 21 | 6 | 1 | 322 | 1 | 373 | 3.1e-142 | 514.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050830.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050829 | MS.gene050830 | 0.866669 | 2.41E-65 | -1.69E-46 |
| MS.gene050830 | MS.gene072635 | 0.954242 | 4.60E-112 | -1.69E-46 |
| MS.gene050830 | MS.gene23098 | 0.852668 | 3.97E-61 | -1.69E-46 |
| MS.gene050830 | MS.gene28626 | 0.955737 | 1.52E-113 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050830.t1 | MTR_7g110810 | 78.780 | 377 | 21 | 6 | 1 | 322 | 1 | 373 | 0.0 | 543 |
| MS.gene050830.t1 | MTR_1g084980 | 50.323 | 155 | 62 | 4 | 101 | 251 | 409 | 552 | 3.84e-35 | 135 |
| MS.gene050830.t1 | MTR_7g111320 | 40.654 | 214 | 93 | 8 | 101 | 292 | 379 | 580 | 4.41e-28 | 114 |
| MS.gene050830.t1 | MTR_1g069155 | 39.412 | 170 | 90 | 3 | 67 | 232 | 232 | 392 | 5.97e-28 | 114 |
| MS.gene050830.t1 | MTR_7g099540 | 51.240 | 121 | 48 | 4 | 117 | 237 | 223 | 332 | 1.54e-25 | 106 |
| MS.gene050830.t1 | MTR_3g449770 | 40.559 | 143 | 75 | 4 | 117 | 258 | 278 | 411 | 4.17e-24 | 102 |
| MS.gene050830.t1 | MTR_7g099540 | 48.819 | 127 | 48 | 5 | 117 | 237 | 223 | 338 | 3.18e-23 | 99.8 |
| MS.gene050830.t1 | MTR_1g019240 | 55.294 | 85 | 36 | 2 | 130 | 214 | 65 | 147 | 3.63e-20 | 88.6 |
| MS.gene050830.t1 | MTR_5g017040 | 42.276 | 123 | 64 | 2 | 108 | 227 | 62 | 180 | 1.73e-19 | 88.2 |
| MS.gene050830.t1 | MTR_4g131160 | 55.357 | 56 | 25 | 0 | 163 | 218 | 207 | 262 | 8.21e-16 | 77.8 |
| MS.gene050830.t1 | MTR_4g131160 | 55.357 | 56 | 25 | 0 | 163 | 218 | 210 | 265 | 8.56e-16 | 77.8 |
| MS.gene050830.t1 | MTR_1g084980 | 41.176 | 119 | 61 | 3 | 101 | 215 | 409 | 522 | 1.11e-15 | 78.2 |
| MS.gene050830.t1 | MTR_1g080890 | 51.786 | 56 | 27 | 0 | 163 | 218 | 204 | 259 | 6.68e-15 | 74.7 |
| MS.gene050830.t1 | MTR_3g103030 | 36.735 | 98 | 53 | 2 | 149 | 244 | 224 | 314 | 4.66e-13 | 69.3 |
| MS.gene050830.t1 | MTR_1g017350 | 46.970 | 66 | 34 | 1 | 163 | 227 | 271 | 336 | 1.08e-12 | 68.6 |
| MS.gene050830.t1 | MTR_1g017350 | 46.970 | 66 | 34 | 1 | 163 | 227 | 271 | 336 | 1.12e-12 | 68.6 |
| MS.gene050830.t1 | MTR_1g017350 | 46.970 | 66 | 34 | 1 | 163 | 227 | 271 | 336 | 1.12e-12 | 68.6 |
| MS.gene050830.t1 | MTR_1g017350 | 46.970 | 66 | 34 | 1 | 163 | 227 | 271 | 336 | 1.25e-12 | 68.6 |
| MS.gene050830.t1 | MTR_1g106460 | 35.065 | 77 | 43 | 1 | 168 | 244 | 254 | 323 | 4.28e-12 | 66.2 |
| MS.gene050830.t1 | MTR_3g116770 | 36.111 | 108 | 60 | 3 | 163 | 261 | 202 | 309 | 1.31e-11 | 65.5 |
| MS.gene050830.t1 | MTR_3g116770 | 36.111 | 108 | 60 | 3 | 163 | 261 | 202 | 309 | 1.34e-11 | 65.1 |
| MS.gene050830.t1 | MTR_5g048860 | 35.652 | 115 | 59 | 3 | 163 | 262 | 376 | 490 | 1.67e-11 | 65.5 |
| MS.gene050830.t1 | MTR_8g024770 | 29.365 | 126 | 79 | 1 | 93 | 218 | 220 | 335 | 2.28e-11 | 64.7 |
| MS.gene050830.t1 | MTR_4g070320 | 35.514 | 107 | 63 | 3 | 118 | 223 | 114 | 215 | 2.33e-11 | 64.3 |
| MS.gene050830.t1 | MTR_0246s0020 | 45.588 | 68 | 37 | 0 | 147 | 214 | 183 | 250 | 2.76e-11 | 64.3 |
| MS.gene050830.t1 | MTR_0246s0020 | 45.588 | 68 | 37 | 0 | 147 | 214 | 183 | 250 | 2.96e-11 | 64.3 |
| MS.gene050830.t1 | MTR_8g065740 | 44.118 | 68 | 37 | 1 | 163 | 229 | 316 | 383 | 4.07e-11 | 63.9 |
| MS.gene050830.t1 | MTR_4g009110 | 47.297 | 74 | 39 | 0 | 135 | 208 | 147 | 220 | 5.81e-11 | 63.2 |
| MS.gene050830.t1 | MTR_5g005110 | 33.333 | 81 | 47 | 1 | 163 | 243 | 235 | 308 | 6.26e-11 | 62.8 |
| MS.gene050830.t1 | MTR_7g053410 | 46.552 | 58 | 30 | 1 | 163 | 219 | 328 | 385 | 8.68e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050830.t1 | AT2G46970 | 39.216 | 204 | 109 | 8 | 101 | 298 | 139 | 333 | 3.56e-31 | 120 |
| MS.gene050830.t1 | AT2G46970 | 39.216 | 204 | 109 | 8 | 101 | 298 | 170 | 364 | 4.99e-31 | 121 |
| MS.gene050830.t1 | AT2G46970 | 39.216 | 204 | 109 | 8 | 101 | 298 | 148 | 342 | 5.21e-31 | 120 |
| MS.gene050830.t1 | AT1G09530 | 47.368 | 133 | 61 | 3 | 99 | 223 | 277 | 408 | 1.72e-29 | 118 |
| MS.gene050830.t1 | AT1G09530 | 47.368 | 133 | 61 | 3 | 99 | 223 | 277 | 408 | 1.72e-29 | 118 |
| MS.gene050830.t1 | AT1G09530 | 47.368 | 133 | 61 | 3 | 99 | 223 | 277 | 408 | 1.72e-29 | 118 |
| MS.gene050830.t1 | AT1G09530 | 47.368 | 133 | 61 | 3 | 99 | 223 | 277 | 408 | 1.72e-29 | 118 |
| MS.gene050830.t1 | AT1G09530 | 47.368 | 133 | 61 | 3 | 99 | 223 | 277 | 408 | 1.72e-29 | 118 |
| MS.gene050830.t1 | AT1G09530 | 47.368 | 133 | 61 | 3 | 99 | 223 | 277 | 408 | 1.72e-29 | 118 |
| MS.gene050830.t1 | AT2G20180 | 40.964 | 166 | 83 | 3 | 135 | 296 | 190 | 344 | 1.11e-27 | 112 |
| MS.gene050830.t1 | AT2G20180 | 40.964 | 166 | 83 | 3 | 135 | 296 | 190 | 344 | 1.11e-27 | 112 |
| MS.gene050830.t1 | AT2G20180 | 40.964 | 166 | 83 | 3 | 135 | 296 | 190 | 344 | 1.11e-27 | 112 |
| MS.gene050830.t1 | AT2G20180 | 40.964 | 166 | 83 | 3 | 135 | 296 | 261 | 415 | 4.81e-27 | 110 |
| MS.gene050830.t1 | AT2G20180 | 40.964 | 166 | 83 | 3 | 135 | 296 | 261 | 415 | 4.81e-27 | 110 |
| MS.gene050830.t1 | AT2G20180 | 40.964 | 166 | 83 | 3 | 135 | 296 | 261 | 415 | 4.81e-27 | 110 |
| MS.gene050830.t1 | AT2G20180 | 40.964 | 166 | 83 | 3 | 135 | 296 | 261 | 415 | 4.81e-27 | 110 |
| MS.gene050830.t1 | AT4G28800 | 37.297 | 185 | 90 | 8 | 87 | 266 | 198 | 361 | 4.19e-23 | 99.4 |
| MS.gene050830.t1 | AT2G20180 | 54.430 | 79 | 36 | 0 | 135 | 213 | 261 | 339 | 3.05e-22 | 95.9 |
| MS.gene050830.t1 | AT3G59060 | 36.620 | 213 | 119 | 8 | 117 | 317 | 215 | 423 | 1.06e-21 | 95.5 |
| MS.gene050830.t1 | AT5G67110 | 45.045 | 111 | 57 | 3 | 143 | 250 | 79 | 188 | 1.85e-21 | 90.9 |
| MS.gene050830.t1 | AT4G28790 | 39.041 | 146 | 71 | 5 | 129 | 266 | 245 | 380 | 2.27e-21 | 94.4 |
| MS.gene050830.t1 | AT3G59060 | 38.503 | 187 | 104 | 6 | 117 | 293 | 215 | 400 | 2.37e-21 | 94.4 |
| MS.gene050830.t1 | AT3G59060 | 38.503 | 187 | 104 | 6 | 117 | 293 | 215 | 400 | 2.37e-21 | 94.4 |
| MS.gene050830.t1 | AT3G59060 | 38.503 | 187 | 104 | 6 | 117 | 293 | 215 | 400 | 2.37e-21 | 94.4 |
| MS.gene050830.t1 | AT4G36930 | 57.746 | 71 | 25 | 1 | 158 | 223 | 197 | 267 | 1.29e-19 | 89.0 |
| MS.gene050830.t1 | AT4G28800 | 36.464 | 181 | 91 | 7 | 87 | 266 | 210 | 367 | 1.53e-19 | 89.4 |
| MS.gene050830.t1 | AT2G43010 | 52.041 | 98 | 37 | 2 | 117 | 214 | 226 | 313 | 6.13e-18 | 84.3 |
| MS.gene050830.t1 | AT2G43010 | 52.041 | 98 | 37 | 2 | 117 | 214 | 226 | 313 | 6.80e-18 | 84.3 |
| MS.gene050830.t1 | AT2G43010 | 52.041 | 98 | 37 | 2 | 117 | 214 | 233 | 320 | 7.41e-18 | 84.3 |
| MS.gene050830.t1 | AT2G43010 | 52.041 | 98 | 37 | 2 | 117 | 214 | 226 | 313 | 8.46e-18 | 84.0 |
| MS.gene050830.t1 | AT2G43010 | 52.041 | 98 | 37 | 2 | 117 | 214 | 268 | 355 | 1.05e-17 | 84.0 |
| MS.gene050830.t1 | AT4G28815 | 42.857 | 91 | 35 | 2 | 150 | 240 | 66 | 139 | 1.76e-17 | 80.5 |
| MS.gene050830.t1 | AT3G62090 | 36.842 | 171 | 99 | 6 | 146 | 314 | 159 | 322 | 2.01e-17 | 82.0 |
| MS.gene050830.t1 | AT3G62090 | 36.842 | 171 | 99 | 6 | 146 | 314 | 176 | 339 | 2.10e-17 | 82.4 |
| MS.gene050830.t1 | AT2G24260 | 57.143 | 56 | 24 | 0 | 163 | 218 | 46 | 101 | 5.01e-17 | 79.7 |
| MS.gene050830.t1 | AT4G28815 | 42.857 | 91 | 35 | 2 | 150 | 240 | 142 | 215 | 5.24e-17 | 80.5 |
| MS.gene050830.t1 | AT4G00050 | 56.000 | 75 | 30 | 2 | 143 | 215 | 95 | 168 | 7.52e-17 | 80.1 |
| MS.gene050830.t1 | AT4G00050 | 56.000 | 75 | 30 | 2 | 143 | 215 | 197 | 270 | 1.13e-16 | 80.5 |
| MS.gene050830.t1 | AT4G00050 | 56.000 | 75 | 30 | 2 | 143 | 215 | 197 | 270 | 1.23e-16 | 80.5 |
| MS.gene050830.t1 | AT4G28790 | 46.591 | 88 | 42 | 2 | 129 | 212 | 245 | 331 | 1.48e-16 | 79.7 |
| MS.gene050830.t1 | AT2G24260 | 57.143 | 56 | 24 | 0 | 163 | 218 | 149 | 204 | 2.26e-16 | 79.3 |
| MS.gene050830.t1 | AT4G30980 | 55.357 | 56 | 25 | 0 | 163 | 218 | 141 | 196 | 5.96e-16 | 77.4 |
| MS.gene050830.t1 | AT4G30980 | 55.357 | 56 | 25 | 0 | 163 | 218 | 189 | 244 | 1.22e-15 | 77.0 |
| MS.gene050830.t1 | AT5G58010 | 43.373 | 83 | 41 | 2 | 137 | 218 | 88 | 165 | 1.86e-15 | 75.9 |
| MS.gene050830.t1 | AT4G28811 | 50.588 | 85 | 41 | 1 | 131 | 215 | 331 | 414 | 2.93e-13 | 70.9 |
| MS.gene050830.t1 | AT5G61270 | 41.489 | 94 | 55 | 0 | 123 | 216 | 43 | 136 | 3.82e-13 | 68.9 |
| MS.gene050830.t1 | AT5G61270 | 41.489 | 94 | 55 | 0 | 123 | 216 | 43 | 136 | 3.82e-13 | 68.9 |
| MS.gene050830.t1 | AT5G61270 | 41.489 | 94 | 55 | 0 | 123 | 216 | 131 | 224 | 5.85e-13 | 69.3 |
| MS.gene050830.t1 | AT1G10120 | 32.231 | 121 | 68 | 3 | 117 | 223 | 158 | 278 | 1.83e-12 | 67.8 |
| MS.gene050830.t1 | AT1G10120 | 32.231 | 121 | 68 | 3 | 117 | 223 | 158 | 278 | 1.83e-12 | 67.8 |
| MS.gene050830.t1 | AT5G50915 | 38.462 | 91 | 54 | 2 | 138 | 226 | 121 | 211 | 3.11e-12 | 66.2 |
| MS.gene050830.t1 | AT5G50915 | 38.462 | 91 | 54 | 2 | 138 | 226 | 121 | 211 | 3.11e-12 | 66.2 |
| MS.gene050830.t1 | AT5G50915 | 39.326 | 89 | 52 | 2 | 138 | 224 | 121 | 209 | 4.24e-12 | 66.2 |
| MS.gene050830.t1 | AT5G50915 | 39.326 | 89 | 52 | 2 | 138 | 224 | 121 | 209 | 4.24e-12 | 66.2 |
| MS.gene050830.t1 | AT1G68920 | 43.939 | 66 | 36 | 1 | 163 | 227 | 313 | 378 | 1.41e-11 | 65.5 |
| MS.gene050830.t1 | AT1G68920 | 43.939 | 66 | 36 | 1 | 163 | 227 | 314 | 379 | 1.43e-11 | 65.5 |
| MS.gene050830.t1 | AT1G68920 | 43.939 | 66 | 36 | 1 | 163 | 227 | 314 | 379 | 1.43e-11 | 65.5 |
| MS.gene050830.t1 | AT1G68920 | 43.939 | 66 | 36 | 1 | 163 | 227 | 314 | 379 | 1.43e-11 | 65.5 |
| MS.gene050830.t1 | AT1G32640 | 30.556 | 180 | 95 | 5 | 38 | 208 | 340 | 498 | 1.49e-11 | 65.5 |
| MS.gene050830.t1 | AT2G14760 | 31.148 | 122 | 65 | 4 | 128 | 245 | 219 | 325 | 1.64e-11 | 64.7 |
| MS.gene050830.t1 | AT1G02340 | 56.863 | 51 | 21 | 1 | 166 | 215 | 141 | 191 | 1.68e-11 | 64.3 |
| MS.gene050830.t1 | AT5G43175 | 35.366 | 82 | 46 | 1 | 163 | 244 | 143 | 217 | 1.82e-11 | 63.2 |
| MS.gene050830.t1 | AT1G02340 | 56.863 | 51 | 21 | 1 | 166 | 215 | 134 | 184 | 1.84e-11 | 64.3 |
| MS.gene050830.t1 | AT4G36540 | 30.597 | 134 | 85 | 3 | 91 | 223 | 87 | 213 | 1.92e-11 | 64.3 |
| MS.gene050830.t1 | AT4G36540 | 30.597 | 134 | 85 | 3 | 91 | 223 | 87 | 213 | 2.02e-11 | 64.3 |
| MS.gene050830.t1 | AT2G14760 | 33.333 | 87 | 49 | 2 | 161 | 245 | 259 | 338 | 2.56e-11 | 64.3 |
| MS.gene050830.t1 | AT1G26260 | 42.424 | 66 | 37 | 1 | 163 | 227 | 212 | 277 | 2.82e-11 | 64.3 |
| MS.gene050830.t1 | AT4G34530 | 41.176 | 68 | 39 | 1 | 163 | 229 | 183 | 250 | 2.91e-11 | 63.9 |
| MS.gene050830.t1 | AT1G26260 | 42.424 | 66 | 37 | 1 | 163 | 227 | 183 | 248 | 3.17e-11 | 63.9 |
| MS.gene050830.t1 | AT1G26260 | 42.424 | 66 | 37 | 1 | 163 | 227 | 234 | 299 | 3.20e-11 | 64.3 |
| MS.gene050830.t1 | AT1G26260 | 42.424 | 66 | 37 | 1 | 163 | 227 | 234 | 299 | 3.20e-11 | 64.3 |
| MS.gene050830.t1 | AT1G26260 | 42.424 | 66 | 37 | 1 | 163 | 227 | 234 | 299 | 3.20e-11 | 64.3 |
| MS.gene050830.t1 | AT1G26260 | 42.424 | 66 | 37 | 1 | 163 | 227 | 234 | 299 | 3.20e-11 | 64.3 |
| MS.gene050830.t1 | AT5G62610 | 49.091 | 55 | 27 | 1 | 163 | 216 | 164 | 218 | 3.28e-11 | 63.5 |
| MS.gene050830.t1 | AT5G62610 | 49.091 | 55 | 27 | 1 | 163 | 216 | 164 | 218 | 3.28e-11 | 63.5 |
| MS.gene050830.t1 | AT2G18300 | 43.548 | 62 | 34 | 1 | 163 | 223 | 196 | 257 | 3.99e-11 | 63.5 |
| MS.gene050830.t1 | AT2G18300 | 43.548 | 62 | 34 | 1 | 163 | 223 | 196 | 257 | 4.25e-11 | 63.5 |
| MS.gene050830.t1 | AT3G23690 | 42.424 | 66 | 37 | 1 | 163 | 227 | 202 | 267 | 4.80e-11 | 63.5 |
| MS.gene050830.t1 | AT1G59640 | 45.455 | 55 | 29 | 1 | 163 | 216 | 147 | 201 | 4.83e-11 | 62.8 |
| MS.gene050830.t1 | AT1G25330 | 49.091 | 55 | 27 | 1 | 163 | 216 | 115 | 169 | 5.39e-11 | 62.0 |
| MS.gene050830.t1 | AT2G18300 | 43.548 | 62 | 34 | 1 | 163 | 223 | 196 | 257 | 5.84e-11 | 63.2 |
| MS.gene050830.t1 | AT2G46510 | 50.000 | 52 | 26 | 0 | 163 | 214 | 396 | 447 | 8.59e-11 | 63.2 |
| MS.gene050830.t1 | AT5G48560 | 47.273 | 55 | 28 | 1 | 163 | 216 | 312 | 366 | 9.21e-11 | 63.2 |
Find 0 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCATAATTTATCTGAA+AGG | - | 50589:3344-3363 | MS.gene050830:CDS | 15.0% |
| !! | AATTCATAATTTATCTGAAA+GGG | - | 50589:3345-3364 | MS.gene050830:CDS | 15.0% |
| !! | AACATCATAAAATGATTAAC+TGG | + | 50589:3864-3883 | None:intergenic | 20.0% |
| !! | ATTGTTGCATAGAAAATTTA+AGG | + | 50589:3744-3763 | None:intergenic | 20.0% |
| ! | AACAAACGTAAAATAGCATA+TGG | + | 50589:3112-3131 | None:intergenic | 25.0% |
| ! | AATAAAGTTCAACTTCAACA+AGG | + | 50589:3586-3605 | None:intergenic | 25.0% |
| ! | CTTACATCATCACTTAAATA+TGG | + | 50589:3075-3094 | None:intergenic | 25.0% |
| ! | TGAAGAAACACAAGAAAATA+CGG | - | 50589:3264-3283 | MS.gene050830:intron | 25.0% |
| !! | TATTTAAGTGATGATGTAAG+TGG | - | 50589:3075-3094 | MS.gene050830:intron | 25.0% |
| !!! | TGCTTTGTTTTTGTTATAGA+TGG | - | 50589:3642-3661 | MS.gene050830:CDS | 25.0% |
| ACCAAAGTTTAGATCATTTG+AGG | + | 50589:3019-3038 | None:intergenic | 30.0% | |
| ACTTAAATATGGAGAGTCAT+CGG | + | 50589:3064-3083 | None:intergenic | 30.0% | |
| ATAATTTATCTGAAAGGGTG+AGG | - | 50589:3350-3369 | MS.gene050830:CDS | 30.0% | |
| ATGAATGCACAACATTTGAT+GGG | - | 50589:3921-3940 | MS.gene050830:intron | 30.0% | |
| ATTCATGTTCATATGATGTG+CGG | + | 50589:3889-3908 | None:intergenic | 30.0% | |
| GGGTGTGAATATCAAAAAAA+TGG | - | 50589:2682-2701 | MS.gene050830:CDS | 30.0% | |
| GTGAGTACTATTCTTACTTT+GGG | + | 50589:2575-2594 | None:intergenic | 30.0% | |
| TATGAATGCACAACATTTGA+TGG | - | 50589:3920-3939 | MS.gene050830:intron | 30.0% | |
| TCACATACCTTATTGCAATT+TGG | + | 50589:3528-3547 | None:intergenic | 30.0% | |
| TGTGAGTACTATTCTTACTT+TGG | + | 50589:2576-2595 | None:intergenic | 30.0% | |
| TTCATATGCAGAGTTTGATT+TGG | + | 50589:2848-2867 | None:intergenic | 30.0% | |
| TTTCTCTTTCCTCTAATTCT+AGG | + | 50589:2937-2956 | None:intergenic | 30.0% | |
| ! | TGGTGTTAGAAAATCATATG+AGG | - | 50589:3035-3054 | MS.gene050830:intron | 30.0% |
| !! | CTTCTTTTGATTCTTTCTCT+TGG | + | 50589:2774-2793 | None:intergenic | 30.0% |
| AAAGAAAAGCCAGCTCATAA+TGG | - | 50589:3289-3308 | MS.gene050830:intron | 35.0% | |
| ACAGTTTCCTATTCCACAAA+TGG | - | 50589:3959-3978 | MS.gene050830:intron | 35.0% | |
| ACGTTGCAGATTATGTCAAT+GGG | - | 50589:3822-3841 | MS.gene050830:CDS | 35.0% | |
| AGCTTCAGAATGTTCATCAA+CGG | + | 50589:2893-2912 | None:intergenic | 35.0% | |
| AGTACTATTCTTACTTTGGG+AGG | + | 50589:2572-2591 | None:intergenic | 35.0% | |
| ATCAAGCTTCGTAAGAATGA+TGG | + | 50589:3223-3242 | None:intergenic | 35.0% | |
| CAGTTTCCTATTCCACAAAT+GGG | - | 50589:3960-3979 | MS.gene050830:intron | 35.0% | |
| GCCTCAAATGATCTAAACTT+TGG | - | 50589:3015-3034 | MS.gene050830:intron | 35.0% | |
| GCTCATACCAAATTGCAATA+AGG | - | 50589:3518-3537 | MS.gene050830:intron | 35.0% | |
| GGAATAGGAAACTGTATTTG+TGG | + | 50589:3954-3973 | None:intergenic | 35.0% | |
| TCACAGAAACAGTACTTGAT+GGG | - | 50589:2661-2680 | MS.gene050830:CDS | 35.0% | |
| TCCTCTCAAAAAACCAAGAT+TGG | - | 50589:2612-2631 | MS.gene050830:CDS | 35.0% | |
| TTCATGTTCATATGATGTGC+GGG | + | 50589:3888-3907 | None:intergenic | 35.0% | |
| ! | TAATTCTAGGTGCATTGGTA+TGG | + | 50589:2924-2943 | None:intergenic | 35.0% |
| ! | TTGATTCTGGTTACCAAAAG+AGG | + | 50589:4123-4142 | None:intergenic | 35.0% |
| !! | GTTTGGTTTGAATCCAATCT+TGG | + | 50589:2628-2647 | None:intergenic | 35.0% |
| !!! | TCCAATCTTGGTTTTTTGAG+AGG | + | 50589:2616-2635 | None:intergenic | 35.0% |
| AACGACAGAGTTCAGATGTT+TGG | - | 50589:4005-4024 | MS.gene050830:intron | 40.0% | |
| ACCAATGCACCTAGAATTAG+AGG | - | 50589:2925-2944 | MS.gene050830:intron | 40.0% | |
| ACTCTGTTTCCATTATGAGC+TGG | + | 50589:3301-3320 | None:intergenic | 40.0% | |
| ATTGAAACTGTGTCTGTGTC+TGG | + | 50589:3175-3194 | None:intergenic | 40.0% | |
| CACAGAAACAGTACTTGATG+GGG | - | 50589:2662-2681 | MS.gene050830:CDS | 40.0% | |
| CCAATGATAGGAGGAATGAA+AGG | + | 50589:4074-4093 | None:intergenic | 40.0% | |
| CCTTTCATTCCTCCTATCAT+TGG | - | 50589:4071-4090 | MS.gene050830:intron | 40.0% | |
| CTCACAGAAACAGTACTTGA+TGG | - | 50589:2660-2679 | MS.gene050830:CDS | 40.0% | |
| GAAGAGTTTCCAATGATAGG+AGG | + | 50589:4083-4102 | None:intergenic | 40.0% | |
| GACGTTGCAGATTATGTCAA+TGG | - | 50589:3821-3840 | MS.gene050830:CDS | 40.0% | |
| GGAATGAAAATCACTGTGAG+AGG | + | 50589:2551-2570 | None:intergenic | 40.0% | |
| GTGGAAGAGTTTCCAATGAT+AGG | + | 50589:4086-4105 | None:intergenic | 40.0% | |
| TACCTGTAACTGAAGCTTGA+GGG | + | 50589:3710-3729 | None:intergenic | 40.0% | |
| TCAAGTGAGCATACAGAAGA+TGG | + | 50589:2994-3013 | None:intergenic | 40.0% | |
| TCAGAATGTTCATCAACGGT+TGG | + | 50589:2889-2908 | None:intergenic | 40.0% | |
| TCAGAGATGACAAGAAGCAA+TGG | - | 50589:2517-2536 | MS.gene050830:CDS | 40.0% | |
| TCCTCTAATTCTAGGTGCAT+TGG | + | 50589:2929-2948 | None:intergenic | 40.0% | |
| TTACCTGTAACTGAAGCTTG+AGG | + | 50589:3711-3730 | None:intergenic | 40.0% | |
| TTACTATGAAGCACGAACAC+TGG | - | 50589:3137-3156 | MS.gene050830:CDS | 40.0% | |
| TTGACATGTGTGGTGGTAAT+TGG | + | 50589:4040-4059 | None:intergenic | 40.0% | |
| ! | TTCTGGTTACCAAAAGAGGT+TGG | + | 50589:4119-4138 | None:intergenic | 40.0% |
| ! | TTTGGTAACCAGAATCAACC+TGG | - | 50589:4125-4144 | MS.gene050830:CDS | 40.0% |
| !! | CACAACATTTGATGGGTTTC+AGG | - | 50589:3928-3947 | MS.gene050830:intron | 40.0% |
| !! | GTGAGTTTGTTGTTGCAGTT+TGG | + | 50589:2645-2664 | None:intergenic | 40.0% |
| !! | GTTGATTTGAGAAACACTGC+AGG | + | 50589:2736-2755 | None:intergenic | 40.0% |
| !! | TTACCAAAAGAGGTTGGTGT+TGG | + | 50589:4113-4132 | None:intergenic | 40.0% |
| AATCAACCTGGAAGGACATG+TGG | - | 50589:4137-4156 | MS.gene050830:CDS | 45.0% | |
| AATCACTGTGAGAGGAACCT+AGG | + | 50589:2543-2562 | None:intergenic | 45.0% | |
| ACAGAGTCAAGAGAAGCTAC+AGG | - | 50589:3314-3333 | MS.gene050830:CDS | 45.0% | |
| ATGACAAGAAGCAATGGCCT+AGG | - | 50589:2523-2542 | MS.gene050830:CDS | 45.0% | |
| CATGTGTGGTGGTAATTGGT+TGG | + | 50589:4036-4055 | None:intergenic | 45.0% | |
| CCATCACCCATTTGTGGAAT+AGG | + | 50589:3969-3988 | None:intergenic | 45.0% | |
| CCTATTCCACAAATGGGTGA+TGG | - | 50589:3966-3985 | MS.gene050830:intron | 45.0% | |
| GCATTGGGAATTGACATGTG+TGG | + | 50589:4050-4069 | None:intergenic | 45.0% | |
| GTAACCAGAATCAACCTGGA+AGG | - | 50589:4129-4148 | MS.gene050830:CDS | 45.0% | |
| TTGGGAATTGACATGTGTGG+TGG | + | 50589:4047-4066 | None:intergenic | 45.0% | |
| ! | ACACCAACACCAACCTCTTT+TGG | - | 50589:4107-4126 | MS.gene050830:intron | 45.0% |
| ! | AGGAGGAATGAAAGGTGCAT+TGG | + | 50589:4066-4085 | None:intergenic | 45.0% |
| ! | GGAGGAATGAAAGGTGCATT+GGG | + | 50589:4065-4084 | None:intergenic | 45.0% |
| !! | AAAAGAGGTTGGTGTTGGTG+TGG | + | 50589:4108-4127 | None:intergenic | 45.0% |
| !! | ATGTCCTTCCAGGTTGATTC+TGG | + | 50589:4136-4155 | None:intergenic | 45.0% |
| GACCCTCAAGCTTCAGTTAC+AGG | - | 50589:3705-3724 | MS.gene050830:CDS | 50.0% | |
| GTGACACCATCACCCATTTG+TGG | + | 50589:3975-3994 | None:intergenic | 50.0% | |
| ! | AGGTGCATTGGTATGGCTAG+AGG | + | 50589:2917-2936 | None:intergenic | 50.0% |
| !! | AGAGGTTGGTGTTGGTGTGG+TGG | + | 50589:4105-4124 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50589 | gene | 2499 | 4163 | 2499 | ID=MS.gene050830 |
| 50589 | mRNA | 2499 | 4163 | 2499 | ID=MS.gene050830.t1;Parent=MS.gene050830 |
| 50589 | exon | 4118 | 4163 | 4118 | ID=MS.gene050830.t1.exon1;Parent=MS.gene050830.t1 |
| 50589 | CDS | 4118 | 4163 | 4118 | ID=cds.MS.gene050830.t1;Parent=MS.gene050830.t1 |
| 50589 | exon | 3573 | 3922 | 3573 | ID=MS.gene050830.t1.exon2;Parent=MS.gene050830.t1 |
| 50589 | CDS | 3573 | 3922 | 3573 | ID=cds.MS.gene050830.t1;Parent=MS.gene050830.t1 |
| 50589 | exon | 3296 | 3403 | 3296 | ID=MS.gene050830.t1.exon3;Parent=MS.gene050830.t1 |
| 50589 | CDS | 3296 | 3403 | 3296 | ID=cds.MS.gene050830.t1;Parent=MS.gene050830.t1 |
| 50589 | exon | 3123 | 3188 | 3123 | ID=MS.gene050830.t1.exon4;Parent=MS.gene050830.t1 |
| 50589 | CDS | 3123 | 3188 | 3123 | ID=cds.MS.gene050830.t1;Parent=MS.gene050830.t1 |
| 50589 | exon | 2936 | 3001 | 2936 | ID=MS.gene050830.t1.exon5;Parent=MS.gene050830.t1 |
| 50589 | CDS | 2936 | 3001 | 2936 | ID=cds.MS.gene050830.t1;Parent=MS.gene050830.t1 |
| 50589 | exon | 2499 | 2831 | 2499 | ID=MS.gene050830.t1.exon6;Parent=MS.gene050830.t1 |
| 50589 | CDS | 2499 | 2831 | 2499 | ID=cds.MS.gene050830.t1;Parent=MS.gene050830.t1 |
| Gene Sequence |
| Protein sequence |
