Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050829.t1 | XP_003626080.1 | 85.7 | 266 | 22 | 4 | 26 | 290 | 1 | 251 | 1.60E-111 | 412.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050829.t1 | G7KUN6 | 85.7 | 266 | 22 | 4 | 26 | 290 | 1 | 251 | 1.1e-111 | 412.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050829.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050829 | MS.gene050830 | 0.866669 | 2.41E-65 | -1.69E-46 |
| MS.gene050829 | MS.gene072635 | 0.896365 | 3.95E-76 | -1.69E-46 |
| MS.gene050829 | MS.gene23098 | 0.95642 | 3.08E-114 | -1.69E-46 |
| MS.gene050829 | MS.gene28626 | 0.840943 | 6.41E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050829.t1 | MTR_7g110810 | 85.714 | 266 | 22 | 4 | 26 | 290 | 1 | 251 | 3.93e-160 | 451 |
| MS.gene050829.t1 | MTR_1g084980 | 47.872 | 94 | 43 | 2 | 191 | 280 | 409 | 500 | 7.37e-16 | 78.2 |
| MS.gene050829.t1 | MTR_1g084980 | 47.872 | 94 | 43 | 2 | 191 | 280 | 409 | 500 | 1.73e-15 | 76.6 |
| MS.gene050829.t1 | MTR_1g069155 | 51.351 | 74 | 31 | 2 | 207 | 280 | 287 | 355 | 5.53e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050829.t1 | AT1G09530 | 33.668 | 199 | 97 | 8 | 96 | 280 | 198 | 375 | 7.26e-15 | 75.1 |
| MS.gene050829.t1 | AT1G09530 | 33.668 | 199 | 97 | 8 | 96 | 280 | 198 | 375 | 7.26e-15 | 75.1 |
| MS.gene050829.t1 | AT1G09530 | 33.668 | 199 | 97 | 8 | 96 | 280 | 198 | 375 | 7.26e-15 | 75.1 |
| MS.gene050829.t1 | AT1G09530 | 33.668 | 199 | 97 | 8 | 96 | 280 | 198 | 375 | 7.26e-15 | 75.1 |
| MS.gene050829.t1 | AT1G09530 | 33.668 | 199 | 97 | 8 | 96 | 280 | 198 | 375 | 7.26e-15 | 75.1 |
| MS.gene050829.t1 | AT1G09530 | 33.668 | 199 | 97 | 8 | 96 | 280 | 198 | 375 | 7.26e-15 | 75.1 |
Find 0 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTATGTTTTTTTAG+GGG | - | 50583:42964-42983 | MS.gene050829:CDS | 10.0% |
| !!! | AATATACATTGTAATATTTT+CGG | - | 50583:43129-43148 | MS.gene050829:CDS | 10.0% |
| !!! | ATTAAAATTTTAAAATGGTA+AGG | - | 50583:43175-43194 | MS.gene050829:CDS | 10.0% |
| !!! | CAAAAAATTATGTTTTTTTA+GGG | - | 50583:42963-42982 | MS.gene050829:CDS | 10.0% |
| !! | AAATTCATAATTTATCTGAA+AGG | - | 50583:41121-41140 | MS.gene050829:intron | 15.0% |
| !! | AATTCATAATTTATCTGAAA+GGG | - | 50583:41122-41141 | MS.gene050829:intron | 15.0% |
| !!! | AATAAAAAACATAACTCTTT+TGG | + | 50583:42991-43010 | None:intergenic | 15.0% |
| !!! | CCAAAAAATTATGTTTTTTT+AGG | - | 50583:42962-42981 | MS.gene050829:CDS | 15.0% |
| !!! | CCTAAAAAAACATAATTTTT+TGG | + | 50583:42965-42984 | None:intergenic | 15.0% |
| !! | AACATCATAAAATGATTAAC+TGG | + | 50583:41641-41660 | None:intergenic | 20.0% |
| !! | ATTGTTGCATAGAAAATTTA+AGG | + | 50583:41521-41540 | None:intergenic | 20.0% |
| !! | TATTAAAAATCATTGTCAGA+AGG | + | 50583:42200-42219 | None:intergenic | 20.0% |
| !! | TGAATCATTAAAGAAAAGTA+GGG | - | 50583:42118-42137 | MS.gene050829:CDS | 20.0% |
| !! | TTGAATCATTAAAGAAAAGT+AGG | - | 50583:42117-42136 | MS.gene050829:CDS | 20.0% |
| !!! | AAATTTTAAAATGGTAAGGA+AGG | - | 50583:43179-43198 | MS.gene050829:CDS | 20.0% |
| !!! | TGACAATGATTTTTAATACA+AGG | - | 50583:42202-42221 | MS.gene050829:intron | 20.0% |
| ! | AAAAGAGACATTTGATATGT+TGG | - | 50583:42020-42039 | MS.gene050829:intron | 25.0% |
| ! | AAAGAGACATTTGATATGTT+GGG | - | 50583:42021-42040 | MS.gene050829:intron | 25.0% |
| ! | AACAAACGTAAAATAGCATA+TGG | + | 50583:40889-40908 | None:intergenic | 25.0% |
| ! | AATAAAGTTCAACTTCAACA+AGG | + | 50583:41363-41382 | None:intergenic | 25.0% |
| ! | AGTTATCCAAATTAATCGAA+AGG | - | 50583:42893-42912 | MS.gene050829:CDS | 25.0% |
| ! | ATGACAGTAAAAATACTCTA+AGG | + | 50583:43077-43096 | None:intergenic | 25.0% |
| ! | CTAGATTTCTTGAAATATGT+TGG | + | 50583:42479-42498 | None:intergenic | 25.0% |
| ! | CTTACATCATCACTTAAATA+TGG | + | 50583:40852-40871 | None:intergenic | 25.0% |
| ! | GTTATCCAAATTAATCGAAA+GGG | - | 50583:42894-42913 | MS.gene050829:CDS | 25.0% |
| ! | TCTTTAATGATTCAAAAAGC+TGG | + | 50583:42112-42131 | None:intergenic | 25.0% |
| ! | TGAAGAAACACAAGAAAATA+CGG | - | 50583:41041-41060 | MS.gene050829:intron | 25.0% |
| !! | ATTAGCTTAAACAACTAAGA+TGG | - | 50583:42674-42693 | MS.gene050829:CDS | 25.0% |
| !! | TATTTAAGTGATGATGTAAG+TGG | - | 50583:40852-40871 | MS.gene050829:intron | 25.0% |
| !!! | TGCTTTGTTTTTGTTATAGA+TGG | - | 50583:41419-41438 | MS.gene050829:intron | 25.0% |
| AAACAACGTACACAAACTTA+AGG | - | 50583:40211-40230 | MS.gene050829:CDS | 30.0% | |
| AATTTACCTACCAACAAAAG+AGG | - | 50583:42446-42465 | MS.gene050829:intron | 30.0% | |
| ACCAAAGTTTAGATCATTTG+AGG | + | 50583:40796-40815 | None:intergenic | 30.0% | |
| ACCAACTTTGATACTATTGT+GGG | - | 50583:42248-42267 | MS.gene050829:intron | 30.0% | |
| ACTTAAATATGGAGAGTCAT+CGG | + | 50583:40841-40860 | None:intergenic | 30.0% | |
| AGCCTATGCATAATATTCTT+GGG | + | 50583:41958-41977 | None:intergenic | 30.0% | |
| AGTGTAAGTTTGAACATGAA+AGG | - | 50583:42593-42612 | MS.gene050829:CDS | 30.0% | |
| ATAATTTATCTGAAAGGGTG+AGG | - | 50583:41127-41146 | MS.gene050829:intron | 30.0% | |
| ATGAATGCACAACATTTGAT+GGG | - | 50583:41698-41717 | MS.gene050829:intron | 30.0% | |
| ATTCATGTTCATATGATGTG+CGG | + | 50583:41666-41685 | None:intergenic | 30.0% | |
| CATGTTGCTAATGAAGTAAA+TGG | + | 50583:40259-40278 | None:intergenic | 30.0% | |
| CGAAAGGGTTGTAAAAATTA+TGG | - | 50583:42909-42928 | MS.gene050829:CDS | 30.0% | |
| CTTAGTTGTTTAAGCTAATC+AGG | + | 50583:42673-42692 | None:intergenic | 30.0% | |
| GGGTGTGAATATCAAAAAAA+TGG | - | 50583:40459-40478 | MS.gene050829:intron | 30.0% | |
| GTGAGTACTATTCTTACTTT+GGG | + | 50583:40352-40371 | None:intergenic | 30.0% | |
| TACAACCCTTTCGATTAATT+TGG | + | 50583:42902-42921 | None:intergenic | 30.0% | |
| TATGAATGCACAACATTTGA+TGG | - | 50583:41697-41716 | MS.gene050829:intron | 30.0% | |
| TCACATACCTTATTGCAATT+TGG | + | 50583:41305-41324 | None:intergenic | 30.0% | |
| TGTGAGTACTATTCTTACTT+TGG | + | 50583:40353-40372 | None:intergenic | 30.0% | |
| TTAATGATTCAAAAAGCTGG+TGG | + | 50583:42109-42128 | None:intergenic | 30.0% | |
| TTCATATGCAGAGTTTGATT+TGG | + | 50583:40625-40644 | None:intergenic | 30.0% | |
| TTGGATACCATGTTGAAAAT+TGG | + | 50583:42542-42561 | None:intergenic | 30.0% | |
| TTGTGAAACAATAGGCTATT+TGG | - | 50583:42782-42801 | MS.gene050829:CDS | 30.0% | |
| TTTCTCTTTCCTCTAATTCT+AGG | + | 50583:40714-40733 | None:intergenic | 30.0% | |
| ! | AATTTTCCTCTTTTGTTGGT+AGG | + | 50583:42455-42474 | None:intergenic | 30.0% |
| ! | TCTTTTAGCATCATGTACTT+TGG | + | 50583:42006-42025 | None:intergenic | 30.0% |
| ! | TGGAAATTTTCCTCTTTTGT+TGG | + | 50583:42459-42478 | None:intergenic | 30.0% |
| ! | TGGTGTTAGAAAATCATATG+AGG | - | 50583:40812-40831 | MS.gene050829:intron | 30.0% |
| ! | TTGCTTACCAATTTTCAACA+TGG | - | 50583:42532-42551 | MS.gene050829:intron | 30.0% |
| !! | AAGATGGTCAATTTGATTTG+AGG | - | 50583:42690-42709 | MS.gene050829:CDS | 30.0% |
| !! | AGATGGTCAATTTGATTTGA+GGG | - | 50583:42691-42710 | MS.gene050829:CDS | 30.0% |
| !! | CTTCTTTTGATTCTTTCTCT+TGG | + | 50583:40551-40570 | None:intergenic | 30.0% |
| AAAGAAAAGCCAGCTCATAA+TGG | - | 50583:41066-41085 | MS.gene050829:intron | 35.0% | |
| AACATATAAGTGAGCGGAAA+AGG | + | 50583:42358-42377 | None:intergenic | 35.0% | |
| AATCAAGGAAAGGATAGCTA+GGG | + | 50583:42153-42172 | None:intergenic | 35.0% | |
| ACAGTTTCCTATTCCACAAA+TGG | - | 50583:41736-41755 | MS.gene050829:intron | 35.0% | |
| ACGTTGCAGATTATGTCAAT+GGG | - | 50583:41599-41618 | MS.gene050829:intron | 35.0% | |
| AGCTTCAGAATGTTCATCAA+CGG | + | 50583:40670-40689 | None:intergenic | 35.0% | |
| AGTACTATTCTTACTTTGGG+AGG | + | 50583:40349-40368 | None:intergenic | 35.0% | |
| ATCAAGCTTCGTAAGAATGA+TGG | + | 50583:41000-41019 | None:intergenic | 35.0% | |
| ATGCATAATATTCTTGGGCA+TGG | + | 50583:41953-41972 | None:intergenic | 35.0% | |
| CACCAACTTTGATACTATTG+TGG | - | 50583:42247-42266 | MS.gene050829:intron | 35.0% | |
| CAGTTTCCTATTCCACAAAT+GGG | - | 50583:41737-41756 | MS.gene050829:intron | 35.0% | |
| GAATTGAGAAATACAGTAGC+TGG | + | 50583:42060-42079 | None:intergenic | 35.0% | |
| GAGCCTATGCATAATATTCT+TGG | + | 50583:41959-41978 | None:intergenic | 35.0% | |
| GATAACTTCCTGTTCATAGA+CGG | + | 50583:42880-42899 | None:intergenic | 35.0% | |
| GCCTCAAATGATCTAAACTT+TGG | - | 50583:40792-40811 | MS.gene050829:intron | 35.0% | |
| GCTCATACCAAATTGCAATA+AGG | - | 50583:41295-41314 | MS.gene050829:intron | 35.0% | |
| GGAATAGGAAACTGTATTTG+TGG | + | 50583:41731-41750 | None:intergenic | 35.0% | |
| TCACAGAAACAGTACTTGAT+GGG | - | 50583:40438-40457 | MS.gene050829:intron | 35.0% | |
| TCATTCAAGACGTAAGACAA+GGG | + | 50583:42510-42529 | None:intergenic | 35.0% | |
| TCCCACAATAGTATCAAAGT+TGG | + | 50583:42252-42271 | None:intergenic | 35.0% | |
| TCCTCTCAAAAAACCAAGAT+TGG | - | 50583:40389-40408 | MS.gene050829:intron | 35.0% | |
| TGCAACAACATATAAGTGAG+CGG | + | 50583:42364-42383 | None:intergenic | 35.0% | |
| TGCATAATATTCTTGGGCAT+GGG | + | 50583:41952-41971 | None:intergenic | 35.0% | |
| TGCCCAAGAATATTATGCAT+AGG | - | 50583:41953-41972 | MS.gene050829:intron | 35.0% | |
| TGCTAAATCGAGCTAAATCT+AGG | - | 50583:42742-42761 | MS.gene050829:CDS | 35.0% | |
| TTCATGTTCATATGATGTGC+GGG | + | 50583:41665-41684 | None:intergenic | 35.0% | |
| TTCTGTGCAATTAGTGTGTT+TGG | - | 50583:42077-42096 | MS.gene050829:intron | 35.0% | |
| ! | CATGAGTGTTGTGAAACAAT+AGG | - | 50583:42774-42793 | MS.gene050829:CDS | 35.0% |
| ! | GTTTTGTACGTCATTAGACT+TGG | + | 50583:42561-42580 | None:intergenic | 35.0% |
| ! | TAATTCTAGGTGCATTGGTA+TGG | + | 50583:40701-40720 | None:intergenic | 35.0% |
| ! | TGATGATCCTTCACTCTTTT+AGG | + | 50583:42287-42306 | None:intergenic | 35.0% |
| ! | TTGATTCTGGTTACCAAAAG+AGG | + | 50583:41900-41919 | None:intergenic | 35.0% |
| !! | AGAGCGTTGAAAAAGAGAAA+AGG | - | 50583:42715-42734 | MS.gene050829:CDS | 35.0% |
| !! | AGTTTGTGTACGTTGTTTCT+AGG | + | 50583:40209-40228 | None:intergenic | 35.0% |
| !! | GATGGTCAATTTGATTTGAG+GGG | - | 50583:42692-42711 | MS.gene050829:CDS | 35.0% |
| !! | GTTTGGTTTGAATCCAATCT+TGG | + | 50583:40405-40424 | None:intergenic | 35.0% |
| !!! | TCCAATCTTGGTTTTTTGAG+AGG | + | 50583:40393-40412 | None:intergenic | 35.0% |
| AACGACAGAGTTCAGATGTT+TGG | - | 50583:41782-41801 | MS.gene050829:intron | 40.0% | |
| ACCAATGCACCTAGAATTAG+AGG | - | 50583:40702-40721 | MS.gene050829:intron | 40.0% | |
| ACTCTGTTTCCATTATGAGC+TGG | + | 50583:41078-41097 | None:intergenic | 40.0% | |
| ATACTATTGTGGGATTGCGA+GGG | - | 50583:42258-42277 | MS.gene050829:intron | 40.0% | |
| ATTGAAACTGTGTCTGTGTC+TGG | + | 50583:40952-40971 | None:intergenic | 40.0% | |
| CAATCAAGGAAAGGATAGCT+AGG | + | 50583:42154-42173 | None:intergenic | 40.0% | |
| CACAGAAACAGTACTTGATG+GGG | - | 50583:40439-40458 | MS.gene050829:intron | 40.0% | |
| CCAATGATAGGAGGAATGAA+AGG | + | 50583:41851-41870 | None:intergenic | 40.0% | |
| CCTTTCATTCCTCCTATCAT+TGG | - | 50583:41848-41867 | MS.gene050829:intron | 40.0% | |
| CTAGCTATCCTTTCCTTGAT+TGG | - | 50583:42152-42171 | MS.gene050829:CDS | 40.0% | |
| CTCACAGAAACAGTACTTGA+TGG | - | 50583:40437-40456 | MS.gene050829:intron | 40.0% | |
| CTCATTCAAGACGTAAGACA+AGG | + | 50583:42511-42530 | None:intergenic | 40.0% | |
| GAAGAGTTTCCAATGATAGG+AGG | + | 50583:41860-41879 | None:intergenic | 40.0% | |
| GACGTTGCAGATTATGTCAA+TGG | - | 50583:41598-41617 | MS.gene050829:intron | 40.0% | |
| GGAATGAAAATCACTGTGAG+AGG | + | 50583:40328-40347 | None:intergenic | 40.0% | |
| GTGGAAGAGTTTCCAATGAT+AGG | + | 50583:41863-41882 | None:intergenic | 40.0% | |
| TACCTGTAACTGAAGCTTGA+GGG | + | 50583:41487-41506 | None:intergenic | 40.0% | |
| TCAAGTGAGCATACAGAAGA+TGG | + | 50583:40771-40790 | None:intergenic | 40.0% | |
| TCAGAATGTTCATCAACGGT+TGG | + | 50583:40666-40685 | None:intergenic | 40.0% | |
| TCAGAGATGACAAGAAGCAA+TGG | - | 50583:40294-40313 | MS.gene050829:intron | 40.0% | |
| TCCTCTAATTCTAGGTGCAT+TGG | + | 50583:40706-40725 | None:intergenic | 40.0% | |
| TTACCTGTAACTGAAGCTTG+AGG | + | 50583:41488-41507 | None:intergenic | 40.0% | |
| TTACTATGAAGCACGAACAC+TGG | - | 50583:40914-40933 | MS.gene050829:intron | 40.0% | |
| TTGACATGTGTGGTGGTAAT+TGG | + | 50583:41817-41836 | None:intergenic | 40.0% | |
| TTGATGTTGTGAGCCAATCA+AGG | + | 50583:42168-42187 | None:intergenic | 40.0% | |
| ! | TGATTGGCTCACAACATCAA+CGG | - | 50583:42168-42187 | MS.gene050829:intron | 40.0% |
| ! | TTCTGGTTACCAAAAGAGGT+TGG | + | 50583:41896-41915 | None:intergenic | 40.0% |
| ! | TTTGGTAACCAGAATCAACC+TGG | - | 50583:41902-41921 | MS.gene050829:intron | 40.0% |
| !! | CACAACATTTGATGGGTTTC+AGG | - | 50583:41705-41724 | MS.gene050829:intron | 40.0% |
| !! | GTGAGTTTGTTGTTGCAGTT+TGG | + | 50583:40422-40441 | None:intergenic | 40.0% |
| !! | GTTGATTTGAGAAACACTGC+AGG | + | 50583:40513-40532 | None:intergenic | 40.0% |
| !! | TGTGTACGTTGTTTCTAGGT+TGG | + | 50583:40205-40224 | None:intergenic | 40.0% |
| !! | TTACCAAAAGAGGTTGGTGT+TGG | + | 50583:41890-41909 | None:intergenic | 40.0% |
| AACTTCCTGTTCATAGACGG+TGG | + | 50583:42877-42896 | None:intergenic | 45.0% | |
| AATCAACCTGGAAGGACATG+TGG | - | 50583:41914-41933 | MS.gene050829:intron | 45.0% | |
| AATCACTGTGAGAGGAACCT+AGG | + | 50583:40320-40339 | None:intergenic | 45.0% | |
| ACAGAGTCAAGAGAAGCTAC+AGG | - | 50583:41091-41110 | MS.gene050829:intron | 45.0% | |
| AGAATACTCACTCGCACATG+TGG | - | 50583:42318-42337 | MS.gene050829:CDS | 45.0% | |
| AGGGAAGCCTAAAAGAGTGA+AGG | - | 50583:42277-42296 | MS.gene050829:intron | 45.0% | |
| ATGACAAGAAGCAATGGCCT+AGG | - | 50583:40300-40319 | MS.gene050829:intron | 45.0% | |
| CATGTGTGGTGGTAATTGGT+TGG | + | 50583:41813-41832 | None:intergenic | 45.0% | |
| CCATCACCCATTTGTGGAAT+AGG | + | 50583:41746-41765 | None:intergenic | 45.0% | |
| CCTATTCCACAAATGGGTGA+TGG | - | 50583:41743-41762 | MS.gene050829:intron | 45.0% | |
| GATACTATTGTGGGATTGCG+AGG | - | 50583:42257-42276 | MS.gene050829:intron | 45.0% | |
| GCATTGGGAATTGACATGTG+TGG | + | 50583:41827-41846 | None:intergenic | 45.0% | |
| GTAACCAGAATCAACCTGGA+AGG | - | 50583:41906-41925 | MS.gene050829:intron | 45.0% | |
| GTTGTGAGCCAATCAAGGAA+AGG | + | 50583:42163-42182 | None:intergenic | 45.0% | |
| TTGGGAATTGACATGTGTGG+TGG | + | 50583:41824-41843 | None:intergenic | 45.0% | |
| ! | ACACCAACACCAACCTCTTT+TGG | - | 50583:41884-41903 | MS.gene050829:intron | 45.0% |
| ! | AGGAGGAATGAAAGGTGCAT+TGG | + | 50583:41843-41862 | None:intergenic | 45.0% |
| ! | GGAGGAATGAAAGGTGCATT+GGG | + | 50583:41842-41861 | None:intergenic | 45.0% |
| !! | AAAAGAGGTTGGTGTTGGTG+TGG | + | 50583:41885-41904 | None:intergenic | 45.0% |
| !! | ATGTCCTTCCAGGTTGATTC+TGG | + | 50583:41913-41932 | None:intergenic | 45.0% |
| !! | AACTAAAAAAAAAAAAAAAA+AGG | - | 50583:42641-42660 | MS.gene050829:CDS | 5.0% |
| !!! | AATTCATTAAAATTTTAAAA+TGG | - | 50583:43170-43189 | MS.gene050829:CDS | 5.0% |
| GACCCTCAAGCTTCAGTTAC+AGG | - | 50583:41482-41501 | MS.gene050829:intron | 50.0% | |
| GTGACACCATCACCCATTTG+TGG | + | 50583:41752-41771 | None:intergenic | 50.0% | |
| ! | AGGTGCATTGGTATGGCTAG+AGG | + | 50583:40694-40713 | None:intergenic | 50.0% |
| ATAGACGGTGGCGACAGAAG+AGG | + | 50583:42865-42884 | None:intergenic | 55.0% | |
| TAGACGGTGGCGACAGAAGA+GGG | + | 50583:42864-42883 | None:intergenic | 55.0% | |
| TGTCGCCACCGTCTATGAAC+AGG | - | 50583:42869-42888 | MS.gene050829:CDS | 55.0% | |
| ! | GACTAGCCACATGTCCTTCC+AGG | + | 50583:41923-41942 | None:intergenic | 55.0% |
| !! | AGAGGTTGGTGTTGGTGTGG+TGG | + | 50583:41882-41901 | None:intergenic | 55.0% |
| GGTGGCGACAGAAGAGGGAG+AGG | + | 50583:42859-42878 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50583 | gene | 40201 | 43232 | 40201 | ID=MS.gene050829 |
| 50583 | mRNA | 40201 | 43232 | 40201 | ID=MS.gene050829.t1;Parent=MS.gene050829 |
| 50583 | exon | 42567 | 43232 | 42567 | ID=MS.gene050829.t1.exon1;Parent=MS.gene050829.t1 |
| 50583 | CDS | 42567 | 43232 | 42567 | ID=cds.MS.gene050829.t1;Parent=MS.gene050829.t1 |
| 50583 | exon | 42290 | 42397 | 42290 | ID=MS.gene050829.t1.exon2;Parent=MS.gene050829.t1 |
| 50583 | CDS | 42290 | 42397 | 42290 | ID=cds.MS.gene050829.t1;Parent=MS.gene050829.t1 |
| 50583 | exon | 42117 | 42182 | 42117 | ID=MS.gene050829.t1.exon3;Parent=MS.gene050829.t1 |
| 50583 | CDS | 42117 | 42182 | 42117 | ID=cds.MS.gene050829.t1;Parent=MS.gene050829.t1 |
| 50583 | exon | 40201 | 40236 | 40201 | ID=MS.gene050829.t1.exon4;Parent=MS.gene050829.t1 |
| 50583 | CDS | 40201 | 40236 | 40201 | ID=cds.MS.gene050829.t1;Parent=MS.gene050829.t1 |
| Gene Sequence |
| Protein sequence |
