Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28675.t1 | ACX37086.1 | 96.1 | 434 | 17 | 0 | 1 | 434 | 1 | 434 | 2.00E-227 | 798.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28675.t1 | D0EPY5 | 96.1 | 434 | 17 | 0 | 1 | 434 | 1 | 434 | 1.4e-227 | 798.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050277 | MS.gene28675 | -0.811696 | 6.15E-51 | -1.69E-46 |
MS.gene052286 | MS.gene28675 | -0.811706 | 6.12E-51 | -1.69E-46 |
MS.gene056631 | MS.gene28675 | -0.812136 | 4.93E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28675.t1 | MTR_4g091530 | 95.853 | 434 | 15 | 3 | 1 | 434 | 1 | 431 | 0.0 | 835 |
MS.gene28675.t1 | MTR_1g109470 | 47.959 | 196 | 89 | 6 | 6 | 191 | 24 | 216 | 3.81e-45 | 167 |
MS.gene28675.t1 | MTR_6g082400 | 53.247 | 154 | 61 | 7 | 28 | 175 | 58 | 206 | 5.66e-39 | 149 |
MS.gene28675.t1 | MTR_8g106245 | 47.340 | 188 | 75 | 7 | 16 | 190 | 30 | 206 | 7.01e-36 | 139 |
MS.gene28675.t1 | MTR_2g010160 | 53.448 | 116 | 53 | 1 | 16 | 131 | 31 | 145 | 4.41e-35 | 135 |
MS.gene28675.t1 | MTR_4g116520 | 45.390 | 141 | 70 | 3 | 28 | 166 | 151 | 286 | 1.69e-31 | 128 |
MS.gene28675.t1 | MTR_4g092850 | 53.774 | 106 | 46 | 2 | 28 | 131 | 38 | 142 | 2.21e-31 | 125 |
MS.gene28675.t1 | MTR_2g461180 | 45.255 | 137 | 68 | 3 | 28 | 162 | 214 | 345 | 2.16e-30 | 125 |
MS.gene28675.t1 | MTR_6g033130 | 41.772 | 158 | 81 | 4 | 28 | 181 | 190 | 340 | 6.71e-28 | 117 |
MS.gene28675.t1 | MTR_6g033130 | 41.772 | 158 | 81 | 4 | 28 | 181 | 190 | 340 | 6.97e-28 | 117 |
MS.gene28675.t1 | MTR_5g067160 | 39.344 | 183 | 99 | 7 | 27 | 199 | 41 | 221 | 1.07e-27 | 114 |
MS.gene28675.t1 | MTR_1g090020 | 37.186 | 199 | 113 | 5 | 2 | 192 | 160 | 354 | 3.35e-27 | 115 |
MS.gene28675.t1 | MTR_8g442400 | 43.284 | 134 | 71 | 3 | 29 | 162 | 179 | 307 | 4.20e-27 | 115 |
MS.gene28675.t1 | MTR_2g005700 | 40.237 | 169 | 84 | 5 | 28 | 183 | 12 | 176 | 1.20e-26 | 109 |
MS.gene28675.t1 | MTR_5g067120 | 47.287 | 129 | 56 | 4 | 28 | 147 | 26 | 151 | 2.08e-26 | 110 |
MS.gene28675.t1 | MTR_3g077030 | 54.545 | 88 | 39 | 1 | 29 | 116 | 9 | 95 | 6.41e-26 | 104 |
MS.gene28675.t1 | MTR_4g128650 | 42.857 | 168 | 85 | 6 | 23 | 187 | 22 | 181 | 1.27e-24 | 107 |
MS.gene28675.t1 | MTR_4g105020 | 52.222 | 90 | 42 | 1 | 29 | 118 | 9 | 97 | 1.31e-24 | 100 |
MS.gene28675.t1 | MTR_5g032960 | 47.115 | 104 | 53 | 1 | 29 | 132 | 16 | 117 | 4.75e-24 | 100 |
MS.gene28675.t1 | MTR_5g488180 | 43.443 | 122 | 63 | 3 | 28 | 145 | 3 | 122 | 2.15e-21 | 92.4 |
MS.gene28675.t1 | MTR_5g088090 | 43.443 | 122 | 63 | 3 | 28 | 145 | 3 | 122 | 2.15e-21 | 92.4 |
MS.gene28675.t1 | MTR_5g088140 | 43.443 | 122 | 63 | 3 | 28 | 145 | 3 | 122 | 2.15e-21 | 92.4 |
MS.gene28675.t1 | MTR_5g088620 | 42.623 | 122 | 64 | 3 | 28 | 145 | 3 | 122 | 2.94e-21 | 92.0 |
MS.gene28675.t1 | MTR_5g088120 | 42.623 | 122 | 64 | 3 | 28 | 145 | 3 | 122 | 4.09e-21 | 91.3 |
MS.gene28675.t1 | MTR_5g488190 | 42.623 | 122 | 64 | 3 | 28 | 145 | 3 | 122 | 4.09e-21 | 91.3 |
MS.gene28675.t1 | MTR_5g088590 | 42.623 | 122 | 64 | 3 | 28 | 145 | 3 | 122 | 4.68e-21 | 92.0 |
MS.gene28675.t1 | MTR_5g088040 | 42.623 | 122 | 64 | 4 | 28 | 145 | 3 | 122 | 1.49e-20 | 90.1 |
MS.gene28675.t1 | MTR_5g488200 | 46.392 | 97 | 48 | 3 | 50 | 145 | 183 | 276 | 2.13e-16 | 80.9 |
MS.gene28675.t1 | MTR_5g067200 | 50.000 | 82 | 39 | 2 | 51 | 132 | 14 | 93 | 2.54e-13 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28675.t1 | AT4G05150 | 45.356 | 463 | 171 | 18 | 6 | 422 | 38 | 464 | 1.84e-92 | 287 |
MS.gene28675.t1 | AT2G01190 | 50.649 | 154 | 70 | 5 | 28 | 178 | 74 | 224 | 3.87e-40 | 152 |
MS.gene28675.t1 | AT5G64430 | 43.284 | 201 | 78 | 9 | 11 | 187 | 11 | 199 | 1.18e-33 | 132 |
MS.gene28675.t1 | AT5G09620 | 45.685 | 197 | 72 | 10 | 11 | 187 | 11 | 192 | 3.80e-33 | 131 |
MS.gene28675.t1 | AT5G09620 | 45.685 | 197 | 72 | 10 | 11 | 187 | 11 | 192 | 4.02e-33 | 130 |
MS.gene28675.t1 | AT5G49920 | 56.481 | 108 | 40 | 3 | 25 | 132 | 6 | 106 | 3.80e-32 | 124 |
MS.gene28675.t1 | AT3G18230 | 47.024 | 168 | 78 | 7 | 28 | 192 | 63 | 222 | 3.22e-31 | 126 |
MS.gene28675.t1 | AT5G57610 | 45.946 | 148 | 72 | 4 | 23 | 168 | 18 | 159 | 1.49e-30 | 125 |
MS.gene28675.t1 | AT3G46920 | 38.365 | 159 | 96 | 2 | 18 | 175 | 64 | 221 | 2.39e-29 | 121 |
MS.gene28675.t1 | AT3G46920 | 39.597 | 149 | 88 | 2 | 28 | 175 | 8 | 155 | 5.78e-29 | 120 |
MS.gene28675.t1 | AT3G26510 | 48.148 | 108 | 49 | 2 | 29 | 132 | 10 | 114 | 4.26e-28 | 110 |
MS.gene28675.t1 | AT3G26510 | 48.148 | 108 | 49 | 2 | 29 | 132 | 10 | 114 | 4.26e-28 | 110 |
MS.gene28675.t1 | AT3G26510 | 48.148 | 108 | 49 | 2 | 29 | 132 | 10 | 114 | 4.26e-28 | 110 |
MS.gene28675.t1 | AT3G26510 | 48.148 | 108 | 49 | 2 | 29 | 132 | 10 | 114 | 4.26e-28 | 110 |
MS.gene28675.t1 | AT3G26510 | 48.148 | 108 | 49 | 2 | 29 | 132 | 10 | 114 | 4.26e-28 | 110 |
MS.gene28675.t1 | AT3G26510 | 48.148 | 108 | 49 | 2 | 29 | 132 | 10 | 114 | 4.26e-28 | 110 |
MS.gene28675.t1 | AT2G35050 | 42.222 | 135 | 72 | 3 | 28 | 162 | 176 | 304 | 8.67e-27 | 114 |
MS.gene28675.t1 | AT2G35050 | 42.222 | 135 | 72 | 3 | 28 | 162 | 176 | 304 | 8.67e-27 | 114 |
MS.gene28675.t1 | AT1G70640 | 45.192 | 104 | 53 | 1 | 29 | 132 | 8 | 107 | 8.90e-27 | 106 |
MS.gene28675.t1 | AT3G48240 | 49.038 | 104 | 46 | 2 | 29 | 132 | 14 | 110 | 1.20e-26 | 105 |
MS.gene28675.t1 | AT1G79570 | 48.571 | 105 | 49 | 3 | 28 | 131 | 176 | 276 | 1.73e-26 | 113 |
MS.gene28675.t1 | AT1G79570 | 48.571 | 105 | 49 | 3 | 28 | 131 | 176 | 276 | 2.46e-26 | 112 |
MS.gene28675.t1 | AT1G79570 | 48.571 | 105 | 49 | 3 | 28 | 131 | 176 | 276 | 2.46e-26 | 112 |
MS.gene28675.t1 | AT1G79570 | 48.571 | 105 | 49 | 3 | 28 | 131 | 176 | 276 | 2.76e-26 | 112 |
MS.gene28675.t1 | AT1G79570 | 48.571 | 105 | 49 | 3 | 28 | 131 | 176 | 276 | 2.76e-26 | 112 |
MS.gene28675.t1 | AT1G16270 | 49.524 | 105 | 48 | 3 | 28 | 131 | 164 | 264 | 8.16e-26 | 111 |
MS.gene28675.t1 | AT1G16270 | 49.524 | 105 | 48 | 3 | 28 | 131 | 164 | 264 | 8.16e-26 | 111 |
MS.gene28675.t1 | AT1G16270 | 49.524 | 105 | 48 | 3 | 28 | 131 | 164 | 264 | 8.16e-26 | 111 |
MS.gene28675.t1 | AT1G04700 | 42.282 | 149 | 74 | 5 | 1 | 142 | 89 | 232 | 2.19e-25 | 109 |
MS.gene28675.t1 | AT1G04700 | 42.282 | 149 | 74 | 5 | 1 | 142 | 89 | 232 | 2.19e-25 | 109 |
MS.gene28675.t1 | AT1G04700 | 42.282 | 149 | 74 | 5 | 1 | 142 | 89 | 232 | 2.62e-25 | 109 |
MS.gene28675.t1 | AT3G24715 | 45.045 | 111 | 58 | 2 | 28 | 138 | 175 | 282 | 1.48e-24 | 107 |
MS.gene28675.t1 | AT3G24715 | 45.045 | 111 | 58 | 2 | 28 | 138 | 175 | 282 | 1.48e-24 | 107 |
MS.gene28675.t1 | AT3G24715 | 45.045 | 111 | 58 | 2 | 28 | 138 | 175 | 282 | 1.48e-24 | 107 |
MS.gene28675.t1 | AT1G25300 | 46.729 | 107 | 50 | 2 | 27 | 132 | 9 | 109 | 8.68e-24 | 100 |
MS.gene28675.t1 | AT5G63130 | 47.115 | 104 | 48 | 2 | 29 | 132 | 15 | 111 | 9.76e-23 | 95.5 |
MS.gene28675.t1 | AT5G63130 | 47.115 | 104 | 48 | 2 | 29 | 132 | 15 | 111 | 9.76e-23 | 95.5 |
MS.gene28675.t1 | AT5G16220 | 42.276 | 123 | 65 | 3 | 13 | 132 | 18 | 137 | 9.31e-21 | 94.7 |
Find 151 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTTAAACGGTGGCGTTTC+GGG | 0.121829 | 4.2:-20767292 | MS.gene28675:CDS |
CTTCGTGAATCTTCTCCTTC+TGG | 0.147069 | 4.2:+20767373 | None:intergenic |
TTTGCAACCACAATTGAAAA+TGG | 0.213362 | 4.2:-20766951 | MS.gene28675:CDS |
TGCTTTAAACGGTGGCGTTT+CGG | 0.232989 | 4.2:-20767293 | MS.gene28675:CDS |
GAAGTACCTGATTATCTATT+CGG | 0.242759 | 4.2:-20767229 | MS.gene28675:CDS |
CACAAACTCTCTAAACTTTC+CGG | 0.264017 | 4.2:-20767636 | MS.gene28675:intron |
CAGGCGATGGCGGGGACTGG+TGG | 0.270232 | 4.2:-20766539 | MS.gene28675:CDS |
AGATGTCGTTGTTGTTCTTT+AGG | 0.270705 | 4.2:+20767172 | None:intergenic |
GTAGGACTGTAGGGCTGAAC+CGG | 0.304171 | 4.2:+20766644 | None:intergenic |
GGTTCCGGTTTATTATATTC+AGG | 0.315057 | 4.2:-20766834 | MS.gene28675:CDS |
CGGGTATCATCAAATGATTC+CGG | 0.316503 | 4.2:-20766708 | MS.gene28675:CDS |
GCAGAGAGGTGGAACGGGTC+GGG | 0.349671 | 4.2:-20766507 | MS.gene28675:CDS |
CCACAAGAAGGTGCTTATTC+TGG | 0.354773 | 4.2:-20766872 | MS.gene28675:CDS |
TTGTTCTTTAGGTCGTGATT+CGG | 0.357506 | 4.2:+20767183 | None:intergenic |
GTCCGCTTCATGTGCAGTTT+CGG | 0.358673 | 4.2:-20767762 | MS.gene28675:CDS |
AAGATCAGAAGCTTCTTCTA+TGG | 0.363823 | 4.2:-20767257 | MS.gene28675:CDS |
TTCGTGAATCTTCTCCTTCT+GGG | 0.364740 | 4.2:+20767374 | None:intergenic |
AAACAACTCCGGTCCAGTTC+CGG | 0.378337 | 4.2:-20766570 | MS.gene28675:CDS |
GCCTGGTGGTAAACCGGAAC+TGG | 0.384934 | 4.2:+20766557 | None:intergenic |
TCATCATGCACAACCGGTTC+CGG | 0.393242 | 4.2:-20766849 | MS.gene28675:CDS |
CGGAAAGTTTAGAGAGTTTG+TGG | 0.396173 | 4.2:+20767637 | None:intergenic |
GGCGATGGCGGGGACTGGTG+GGG | 0.397419 | 4.2:-20766537 | MS.gene28675:CDS |
AGGCGATGGCGGGGACTGGT+GGG | 0.397436 | 4.2:-20766538 | MS.gene28675:CDS |
GGTTTATTATATTCAGGGTT+CGG | 0.398190 | 4.2:-20766828 | MS.gene28675:CDS |
CACCAGTCCCCGCCATCGCC+TGG | 0.401694 | 4.2:+20766540 | None:intergenic |
TAAAAGAGAAAACTGGTTCA+TGG | 0.401787 | 4.2:-20767317 | MS.gene28675:CDS |
AGTGAAGTGCAGGGTTAATC+TGG | 0.404619 | 4.2:+20766921 | None:intergenic |
TGTTGTTGAGATTGTGGTTG+TGG | 0.406405 | 4.2:+20766896 | None:intergenic |
ACAAGATAATGTTTCCAATT+CGG | 0.408274 | 4.2:-20767137 | MS.gene28675:CDS |
AAGTACCTGATTATCTATTC+GGG | 0.410034 | 4.2:-20767228 | MS.gene28675:CDS |
TAATGTTTCCAATTCGGATC+CGG | 0.413615 | 4.2:-20767131 | MS.gene28675:CDS |
TGTTCTTTAGGTCGTGATTC+GGG | 0.416472 | 4.2:+20767184 | None:intergenic |
GTTCCGGTTTATTATATTCA+GGG | 0.424050 | 4.2:-20766833 | MS.gene28675:CDS |
TGATAACCAAGTTTCTGAAC+AGG | 0.424232 | 4.2:-20767008 | MS.gene28675:CDS |
AGGAGAACCCGGATCCGAAT+TGG | 0.424926 | 4.2:+20767123 | None:intergenic |
TCCAACCCGAATAGATAATC+AGG | 0.432366 | 4.2:+20767223 | None:intergenic |
CAGAGAGGTGGAACGGGTCG+GGG | 0.432431 | 4.2:-20766506 | MS.gene28675:CDS |
TTCTGGTCATCATGCACAAC+CGG | 0.433210 | 4.2:-20766855 | MS.gene28675:CDS |
GGGGATGAGGCATGTGGCCC+CGG | 0.434471 | 4.2:-20766663 | MS.gene28675:CDS |
GGCACCTGAGGTTGCATCAC+TGG | 0.443860 | 4.2:+20766734 | None:intergenic |
GCCATCGCCTGGTGGTAAAC+CGG | 0.444107 | 4.2:+20766551 | None:intergenic |
TCATCAAATGATTCCGGGTA+CGG | 0.445583 | 4.2:-20766702 | MS.gene28675:CDS |
AGTATCAGTTCACTCTTAAA+CGG | 0.446300 | 4.2:-20767346 | MS.gene28675:CDS |
GTTCATCTAAAAGAGAAAAC+TGG | 0.446694 | 4.2:-20767324 | MS.gene28675:CDS |
GACGTAACGGAGCTGATTAT+CGG | 0.447625 | 4.2:+20767716 | None:intergenic |
CACCAGGCGATGGCGGGGAC+TGG | 0.448982 | 4.2:-20766542 | MS.gene28675:CDS |
GGTTGTGGGTAGTGAAGTGC+AGG | 0.449200 | 4.2:+20766911 | None:intergenic |
AGAAACTTGGTTATCAAGCT+TGG | 0.450096 | 4.2:+20767015 | None:intergenic |
GGTTGCATCACTGGATGATA+TGG | 0.450911 | 4.2:+20766743 | None:intergenic |
AAGTGTATGGTGCGGGGATG+AGG | 0.451803 | 4.2:-20766676 | MS.gene28675:CDS |
TAGGACTGTAGGGCTGAACC+GGG | 0.455812 | 4.2:+20766645 | None:intergenic |
GTTGTTGAGATTGTGGTTGT+GGG | 0.456391 | 4.2:+20766897 | None:intergenic |
AACGCGTCTAAGTCTTCGTT+TGG | 0.459798 | 4.2:+20767502 | None:intergenic |
AATGTTTCCAATTCGGATCC+GGG | 0.461143 | 4.2:-20767130 | MS.gene28675:CDS |
TGAATATAATAAACCGGAAC+CGG | 0.462037 | 4.2:+20766836 | None:intergenic |
GTTTACCACCAGGCGATGGC+GGG | 0.463152 | 4.2:-20766548 | MS.gene28675:CDS |
GAACCCTGAATATAATAAAC+CGG | 0.464629 | 4.2:+20766830 | None:intergenic |
GGGTATCATCAAATGATTCC+GGG | 0.465587 | 4.2:-20766707 | MS.gene28675:CDS |
AGGAGCGTCGTTGAAGTGAT+TGG | 0.466489 | 4.2:+20767791 | None:intergenic |
GGTGGAAGATTCGGAATAGA+AGG | 0.470280 | 4.2:+20767046 | None:intergenic |
ACGGGTCAAGTGTATGGTGC+GGG | 0.473008 | 4.2:-20766683 | MS.gene28675:CDS |
TGTGGTTGTTGTTGAGATTG+TGG | 0.475188 | 4.2:+20766890 | None:intergenic |
ATGCAACCTCAGGTGCCAAT+CGG | 0.477046 | 4.2:-20766728 | MS.gene28675:CDS |
GAGCTGCAGAGAGGTGGAAC+GGG | 0.478542 | 4.2:-20766512 | MS.gene28675:CDS |
GAAGAAGAAACAACCGGAGC+AGG | 0.478610 | 4.2:+20767103 | None:intergenic |
CCGGGTACGGGTCAAGTGTA+TGG | 0.478623 | 4.2:-20766689 | MS.gene28675:CDS |
TGGTTCATGGATGCTTTAAA+CGG | 0.480187 | 4.2:-20767304 | MS.gene28675:CDS |
ATTCAGGGTTCGGTTCAACC+TGG | 0.482983 | 4.2:-20766818 | MS.gene28675:CDS |
TTTGTGGACAAGAGCGGAGA+AGG | 0.483623 | 4.2:+20767653 | None:intergenic |
GAAGGAGATGGAGCGGTTGA+CGG | 0.488287 | 4.2:+20767671 | None:intergenic |
AGCGGTTGACGGCGACGATA+CGG | 0.490801 | 4.2:+20767682 | None:intergenic |
AACGGTGAAGAAGAAACAAC+CGG | 0.494392 | 4.2:+20767097 | None:intergenic |
AGCTGATTATCGGAGGGGCG+AGG | 0.494867 | 4.2:+20767726 | None:intergenic |
TCCAGTTCCGGTTTACCACC+AGG | 0.495490 | 4.2:-20766558 | MS.gene28675:CDS |
CCATGTCCTTGCATATGAAC+CGG | 0.495902 | 4.2:+20766788 | None:intergenic |
TTCTATTCCGAATCTTCCAC+CGG | 0.501262 | 4.2:-20767044 | MS.gene28675:CDS |
ATATGAACCGGTACATTCCC+AGG | 0.501983 | 4.2:+20766800 | None:intergenic |
GCTGATTATCGGAGGGGCGA+GGG | 0.505226 | 4.2:+20767727 | None:intergenic |
CGCCGAAACTGCACATGAAG+CGG | 0.507791 | 4.2:+20767760 | None:intergenic |
TGCAACCTCAGGTGCCAATC+GGG | 0.508511 | 4.2:-20766727 | MS.gene28675:CDS |
AATCTTCTCCTTCTGGGAAG+AGG | 0.515496 | 4.2:+20767380 | None:intergenic |
CGCTTCATGTGCAGTTTCGG+CGG | 0.517726 | 4.2:-20767759 | MS.gene28675:CDS |
ACCTGATTATCTATTCGGGT+TGG | 0.519603 | 4.2:-20767224 | MS.gene28675:CDS |
CATCAAATGATTCCGGGTAC+GGG | 0.524938 | 4.2:-20766701 | MS.gene28675:CDS |
GCGGTTGACGGCGACGATAC+GGG | 0.525392 | 4.2:+20767683 | None:intergenic |
CGTCTCTTCCTCTTCCCAGA+AGG | 0.527288 | 4.2:-20767388 | MS.gene28675:CDS |
AAGTGATTGGAACGAGGGGA+AGG | 0.530356 | 4.2:+20767804 | None:intergenic |
AAATCAAACTGAAACTGAAA+CGG | 0.530818 | 4.2:-20766975 | MS.gene28675:CDS |
TGCAGAGAGGTGGAACGGGT+CGG | 0.531048 | 4.2:-20766508 | MS.gene28675:CDS |
GACAAGAGCGGAGAAGGAGA+TGG | 0.532990 | 4.2:+20767659 | None:intergenic |
GTGGTAAACCGGAACTGGAC+CGG | 0.543478 | 4.2:+20766562 | None:intergenic |
ACAACCGGAGCAGGAGAACC+CGG | 0.546578 | 4.2:+20767112 | None:intergenic |
TCCGGTTTACCACCAGGCGA+TGG | 0.551585 | 4.2:-20766552 | MS.gene28675:CDS |
TGATATGGTTGTTGAACATA+GGG | 0.551634 | 4.2:+20766758 | None:intergenic |
ATCATTTGATGATACCCGAT+TGG | 0.554784 | 4.2:+20766713 | None:intergenic |
GGATCCGGGTTCTCCTGCTC+CGG | 0.555159 | 4.2:-20767116 | MS.gene28675:CDS |
TCATCCAGTGATGCAACCTC+AGG | 0.556282 | 4.2:-20766738 | MS.gene28675:CDS |
GGGTGTCGCCGCCGACGTAA+CGG | 0.556591 | 4.2:+20767703 | None:intergenic |
GGTTTACCACCAGGCGATGG+CGG | 0.559881 | 4.2:-20766549 | MS.gene28675:CDS |
TACGGGTCAAGTGTATGGTG+CGG | 0.564439 | 4.2:-20766684 | MS.gene28675:CDS |
TTCAGGGTTCGGTTCAACCT+GGG | 0.567318 | 4.2:-20766817 | MS.gene28675:CDS |
ACCACCGTGGTAGGACTGTA+GGG | 0.569080 | 4.2:+20766635 | None:intergenic |
CCATACACTTGACCCGTACC+CGG | 0.575911 | 4.2:+20766689 | None:intergenic |
CTGCACATGAAGCGGACACG+TGG | 0.576780 | 4.2:+20767768 | None:intergenic |
GGGGATGAGCTGCAGAGAGG+TGG | 0.577528 | 4.2:-20766518 | MS.gene28675:CDS |
GGTTCAACCTGGGAATGTAC+CGG | 0.579359 | 4.2:-20766807 | MS.gene28675:CDS |
CCATCGTGAACCACCGTGGT+AGG | 0.583743 | 4.2:+20766626 | None:intergenic |
CCGGTTCATATGCAAGGACA+TGG | 0.585570 | 4.2:-20766788 | MS.gene28675:CDS |
CGGGTCAAGTGTATGGTGCG+GGG | 0.586868 | 4.2:-20766682 | MS.gene28675:CDS |
AGAGAGTTTGTGGACAAGAG+CGG | 0.587240 | 4.2:+20767647 | None:intergenic |
TTTACCACCAGGCGATGGCG+GGG | 0.588535 | 4.2:-20766547 | MS.gene28675:CDS |
GAGCGGAGAAGGAGATGGAG+CGG | 0.589074 | 4.2:+20767664 | None:intergenic |
GATTATCGGAGGGGCGAGGG+AGG | 0.590762 | 4.2:+20767730 | None:intergenic |
CCAGAATAAGCACCTTCTTG+TGG | 0.590779 | 4.2:+20766872 | None:intergenic |
GGAACGAGGGGAAGGAGAGA+CGG | 0.593973 | 4.2:+20767812 | None:intergenic |
TGAGCTGCAGAGAGGTGGAA+CGG | 0.596485 | 4.2:-20766513 | MS.gene28675:CDS |
ACCGATGAAGTAGAACAAAA+CGG | 0.598459 | 4.2:+20767079 | None:intergenic |
AACCACCGTGGTAGGACTGT+AGG | 0.600976 | 4.2:+20766634 | None:intergenic |
AATCAGCTCCGTTACGTCGG+CGG | 0.603445 | 4.2:-20767711 | MS.gene28675:CDS |
TGGTGCGGGGATGAGGCATG+TGG | 0.604646 | 4.2:-20766669 | MS.gene28675:CDS |
ATGATATGGTTGTTGAACAT+AGG | 0.605177 | 4.2:+20766757 | None:intergenic |
CAAGCTGTGCAAAACAACTC+CGG | 0.606932 | 4.2:-20766581 | MS.gene28675:CDS |
ACGGAATCGTCGTCTAAGTG+AGG | 0.608186 | 4.2:+20767831 | None:intergenic |
AATGTACCGGTTCATATGCA+AGG | 0.610445 | 4.2:-20766794 | MS.gene28675:CDS |
CGTTGAAGTGATTGGAACGA+GGG | 0.612591 | 4.2:+20767799 | None:intergenic |
GGGTCAATTATGCGGCGAGT+TGG | 0.613192 | 4.2:+20766481 | None:intergenic |
TCTCAACAACAACCACAAGA+AGG | 0.617237 | 4.2:-20766884 | MS.gene28675:CDS |
TTCATGGATGCTTTAAACGG+TGG | 0.619681 | 4.2:-20767301 | MS.gene28675:CDS |
GACGAAGACGAGCTCCTCGT+GGG | 0.622004 | 4.2:+20767407 | None:intergenic |
TAACGGAGCTGATTATCGGA+GGG | 0.629084 | 4.2:+20767720 | None:intergenic |
CACATGAAGCGGACACGTGG+AGG | 0.629109 | 4.2:+20767771 | None:intergenic |
CGGAATCGTCGTCTAAGTGA+GGG | 0.633230 | 4.2:+20767832 | None:intergenic |
AACGGAGCTGATTATCGGAG+GGG | 0.640487 | 4.2:+20767721 | None:intergenic |
AGACGAAGACGAGCTCCTCG+TGG | 0.640866 | 4.2:+20767406 | None:intergenic |
AAACACACGGGTCAATTATG+CGG | 0.641392 | 4.2:+20766473 | None:intergenic |
GGCGTTTCGGGTTTAGAACG+AGG | 0.645113 | 4.2:-20767280 | MS.gene28675:CDS |
CAGTCCCCGCCATCGCCTGG+TGG | 0.647721 | 4.2:+20766543 | None:intergenic |
GATAATCAGCTCCGTTACGT+CGG | 0.649927 | 4.2:-20767714 | MS.gene28675:CDS |
TCGTTGAAGTGATTGGAACG+AGG | 0.653407 | 4.2:+20767798 | None:intergenic |
CGCGTTGATCACAGTAACAA+CGG | 0.656379 | 4.2:-20767485 | MS.gene28675:CDS |
TGATACCCGATTGGCACCTG+AGG | 0.660387 | 4.2:+20766722 | None:intergenic |
GTAACGGAGCTGATTATCGG+AGG | 0.666207 | 4.2:+20767719 | None:intergenic |
CCTACCACGGTGGTTCACGA+TGG | 0.666677 | 4.2:-20766626 | MS.gene28675:CDS |
AGGACTGTAGGGCTGAACCG+GGG | 0.675018 | 4.2:+20766646 | None:intergenic |
GTTGAAGTGATTGGAACGAG+GGG | 0.676892 | 4.2:+20767800 | None:intergenic |
GTTGTGGGTAGTGAAGTGCA+GGG | 0.701572 | 4.2:+20766912 | None:intergenic |
GGTGGGGATGAGCTGCAGAG+AGG | 0.703030 | 4.2:-20766521 | MS.gene28675:CDS |
TCAGCCCTACAGTCCTACCA+CGG | 0.716211 | 4.2:-20766639 | MS.gene28675:CDS |
GCCCTACAGTCCTACCACGG+TGG | 0.740967 | 4.2:-20766636 | MS.gene28675:CDS |
CAAACCATCGTGAACCACCG+TGG | 0.762942 | 4.2:+20766622 | None:intergenic |
ACACAGAATGAAAACCCACG+AGG | 0.829741 | 4.2:-20767421 | MS.gene28675:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTATCCATTTTCAATTG+TGG | + | chr4.2:20767389-20767408 | None:intergenic | 20.0% |
! | AAATCAAACTGAAACTGAAA+CGG | - | chr4.2:20767355-20767374 | MS.gene28675:CDS | 25.0% |
! | ACAAGATAATGTTTCCAATT+CGG | - | chr4.2:20767193-20767212 | MS.gene28675:CDS | 25.0% |
! | ATCATGAATTGAAGAGATAA+GGG | + | chr4.2:20766767-20766786 | None:intergenic | 25.0% |
AAGTACCTGATTATCTATTC+GGG | - | chr4.2:20767102-20767121 | MS.gene28675:CDS | 30.0% | |
AGTATCAGTTCACTCTTAAA+CGG | - | chr4.2:20766984-20767003 | MS.gene28675:CDS | 30.0% | |
ATGATATGGTTGTTGAACAT+AGG | + | chr4.2:20767576-20767595 | None:intergenic | 30.0% | |
GAACCCTGAATATAATAAAC+CGG | + | chr4.2:20767503-20767522 | None:intergenic | 30.0% | |
GATCATGAATTGAAGAGATA+AGG | + | chr4.2:20766768-20766787 | None:intergenic | 30.0% | |
GGAAACTTTCTTAGAGAAAA+GGG | + | chr4.2:20766746-20766765 | None:intergenic | 30.0% | |
GGTTTATTATATTCAGGGTT+CGG | - | chr4.2:20767502-20767521 | MS.gene28675:CDS | 30.0% | |
GTTCATCTAAAAGAGAAAAC+TGG | - | chr4.2:20767006-20767025 | MS.gene28675:CDS | 30.0% | |
GTTCCGGTTTATTATATTCA+GGG | - | chr4.2:20767497-20767516 | MS.gene28675:CDS | 30.0% | |
TAAAAACCTGTTCAGAAACT+TGG | + | chr4.2:20767331-20767350 | None:intergenic | 30.0% | |
TGAATATAATAAACCGGAAC+CGG | + | chr4.2:20767497-20767516 | None:intergenic | 30.0% | |
TGATATGGTTGTTGAACATA+GGG | + | chr4.2:20767575-20767594 | None:intergenic | 30.0% | |
TTTCTTAGAGAAAAGGGAAA+AGG | + | chr4.2:20766740-20766759 | None:intergenic | 30.0% | |
TTTGCAACCACAATTGAAAA+TGG | - | chr4.2:20767379-20767398 | MS.gene28675:CDS | 30.0% | |
! | GAAGTACCTGATTATCTATT+CGG | - | chr4.2:20767101-20767120 | MS.gene28675:CDS | 30.0% |
! | GTTTCTGAACAGGTTTTTAA+AGG | - | chr4.2:20767332-20767351 | MS.gene28675:CDS | 30.0% |
! | TAAAAGAGAAAACTGGTTCA+TGG | - | chr4.2:20767013-20767032 | MS.gene28675:CDS | 30.0% |
!!! | TTATCAAGCTTGGTTTTAAC+CGG | + | chr4.2:20767308-20767327 | None:intergenic | 30.0% |
AAGATCAGAAGCTTCTTCTA+TGG | - | chr4.2:20767073-20767092 | MS.gene28675:CDS | 35.0% | |
ACCGATGAAGTAGAACAAAA+CGG | + | chr4.2:20767254-20767273 | None:intergenic | 35.0% | |
AGAAACTTGGTTATCAAGCT+TGG | + | chr4.2:20767318-20767337 | None:intergenic | 35.0% | |
CACAAACTCTCTAAACTTTC+CGG | - | chr4.2:20766694-20766713 | MS.gene28675:CDS | 35.0% | |
GGGAAACTTTCTTAGAGAAA+AGG | + | chr4.2:20766747-20766766 | None:intergenic | 35.0% | |
GGTTCCGGTTTATTATATTC+AGG | - | chr4.2:20767496-20767515 | MS.gene28675:CDS | 35.0% | |
TAATGTTTCCAATTCGGATC+CGG | - | chr4.2:20767199-20767218 | MS.gene28675:CDS | 35.0% | |
TGATAACCAAGTTTCTGAAC+AGG | - | chr4.2:20767322-20767341 | MS.gene28675:CDS | 35.0% | |
TTGTTCTTTAGGTCGTGATT+CGG | + | chr4.2:20767150-20767169 | None:intergenic | 35.0% | |
! | AGATGTCGTTGTTGTTCTTT+AGG | + | chr4.2:20767161-20767180 | None:intergenic | 35.0% |
! | ATCATTTGATGATACCCGAT+TGG | + | chr4.2:20767620-20767639 | None:intergenic | 35.0% |
! | TGGTTCATGGATGCTTTAAA+CGG | - | chr4.2:20767026-20767045 | MS.gene28675:CDS | 35.0% |
!! | ACCGTTTTGTTCTACTTCAT+CGG | - | chr4.2:20767250-20767269 | MS.gene28675:CDS | 35.0% |
!!! | GAGGGTTTTGAAATTCTTAC+CGG | + | chr4.2:20766716-20766735 | None:intergenic | 35.0% |
AACGGTGAAGAAGAAACAAC+CGG | + | chr4.2:20767236-20767255 | None:intergenic | 40.0% | |
AATGTTTCCAATTCGGATCC+GGG | - | chr4.2:20767200-20767219 | MS.gene28675:CDS | 40.0% | |
ACCTGATTATCTATTCGGGT+TGG | - | chr4.2:20767106-20767125 | MS.gene28675:CDS | 40.0% | |
AGAGAAAAGGGAAAAGGTGA+GGG | + | chr4.2:20766734-20766753 | None:intergenic | 40.0% | |
CGGAAAGTTTAGAGAGTTTG+TGG | + | chr4.2:20766696-20766715 | None:intergenic | 40.0% | |
CGGGTATCATCAAATGATTC+CGG | - | chr4.2:20767622-20767641 | MS.gene28675:intron | 40.0% | |
GGGTATCATCAAATGATTCC+GGG | - | chr4.2:20767623-20767642 | MS.gene28675:intron | 40.0% | |
GTTGTTGAGATTGTGGTTGT+GGG | + | chr4.2:20767436-20767455 | None:intergenic | 40.0% | |
TAGAGAAAAGGGAAAAGGTG+AGG | + | chr4.2:20766735-20766754 | None:intergenic | 40.0% | |
TCATCAAATGATTCCGGGTA+CGG | - | chr4.2:20767628-20767647 | MS.gene28675:intron | 40.0% | |
TCCAACCCGAATAGATAATC+AGG | + | chr4.2:20767110-20767129 | None:intergenic | 40.0% | |
TCTCAACAACAACCACAAGA+AGG | - | chr4.2:20767446-20767465 | MS.gene28675:CDS | 40.0% | |
TGTTCTTTAGGTCGTGATTC+GGG | + | chr4.2:20767149-20767168 | None:intergenic | 40.0% | |
TGTTGTTGAGATTGTGGTTG+TGG | + | chr4.2:20767437-20767456 | None:intergenic | 40.0% | |
TTCAATTCATGATCGTGTGC+AGG | - | chr4.2:20766774-20766793 | MS.gene28675:CDS | 40.0% | |
TTCGTGAATCTTCTCCTTCT+GGG | + | chr4.2:20766959-20766978 | None:intergenic | 40.0% | |
TTCTATTCCGAATCTTCCAC+CGG | - | chr4.2:20767286-20767305 | MS.gene28675:CDS | 40.0% | |
! | TGTGGTTGTTGTTGAGATTG+TGG | + | chr4.2:20767443-20767462 | None:intergenic | 40.0% |
! | TTCATGGATGCTTTAAACGG+TGG | - | chr4.2:20767029-20767048 | MS.gene28675:CDS | 40.0% |
!! | AATGTACCGGTTCATATGCA+AGG | - | chr4.2:20767536-20767555 | MS.gene28675:CDS | 40.0% |
!! | GTTTTAACCGGTGGAAGATT+CGG | + | chr4.2:20767296-20767315 | None:intergenic | 40.0% |
AACGCGTCTAAGTCTTCGTT+TGG | + | chr4.2:20766831-20766850 | None:intergenic | 45.0% | |
ACACAGAATGAAAACCCACG+AGG | - | chr4.2:20766909-20766928 | MS.gene28675:CDS | 45.0% | |
AGAGAGTTTGTGGACAAGAG+CGG | + | chr4.2:20766686-20766705 | None:intergenic | 45.0% | |
AGTGAAGTGCAGGGTTAATC+TGG | + | chr4.2:20767412-20767431 | None:intergenic | 45.0% | |
ATATGAACCGGTACATTCCC+AGG | + | chr4.2:20767533-20767552 | None:intergenic | 45.0% | |
CAAGCTGTGCAAAACAACTC+CGG | - | chr4.2:20767749-20767768 | MS.gene28675:CDS | 45.0% | |
CATCAAATGATTCCGGGTAC+GGG | - | chr4.2:20767629-20767648 | MS.gene28675:intron | 45.0% | |
CCAGAATAAGCACCTTCTTG+TGG | + | chr4.2:20767461-20767480 | None:intergenic | 45.0% | |
CCATGTCCTTGCATATGAAC+CGG | + | chr4.2:20767545-20767564 | None:intergenic | 45.0% | |
CGTTGAAGTGATTGGAACGA+GGG | + | chr4.2:20766534-20766553 | None:intergenic | 45.0% | |
CTTCGTGAATCTTCTCCTTC+TGG | + | chr4.2:20766960-20766979 | None:intergenic | 45.0% | |
GATAATCAGCTCCGTTACGT+CGG | - | chr4.2:20766616-20766635 | MS.gene28675:CDS | 45.0% | |
GGTGGAAGATTCGGAATAGA+AGG | + | chr4.2:20767287-20767306 | None:intergenic | 45.0% | |
GGTTGCATCACTGGATGATA+TGG | + | chr4.2:20767590-20767609 | None:intergenic | 45.0% | |
GTTGAAGTGATTGGAACGAG+GGG | + | chr4.2:20766533-20766552 | None:intergenic | 45.0% | |
TAACGGAGCTGATTATCGGA+GGG | + | chr4.2:20766613-20766632 | None:intergenic | 45.0% | |
TCGTTGAAGTGATTGGAACG+AGG | + | chr4.2:20766535-20766554 | None:intergenic | 45.0% | |
TTCTGGTCATCATGCACAAC+CGG | - | chr4.2:20767475-20767494 | MS.gene28675:CDS | 45.0% | |
! | AATCTTCTCCTTCTGGGAAG+AGG | + | chr4.2:20766953-20766972 | None:intergenic | 45.0% |
! | CGCGTTGATCACAGTAACAA+CGG | - | chr4.2:20766845-20766864 | MS.gene28675:CDS | 45.0% |
! | GACGTAACGGAGCTGATTAT+CGG | + | chr4.2:20766617-20766636 | None:intergenic | 45.0% |
! | GGTTTTCATTCTGTGTGACG+CGG | + | chr4.2:20766905-20766924 | None:intergenic | 45.0% |
! | TGCTTTAAACGGTGGCGTTT+CGG | - | chr4.2:20767037-20767056 | MS.gene28675:CDS | 45.0% |
!! | CCACAAGAAGGTGCTTATTC+TGG | - | chr4.2:20767458-20767477 | MS.gene28675:CDS | 45.0% |
!!! | TCAAGCTTGGTTTTAACCGG+TGG | + | chr4.2:20767305-20767324 | None:intergenic | 45.0% |
AAACAACTCCGGTCCAGTTC+CGG | - | chr4.2:20767760-20767779 | MS.gene28675:CDS | 50.0% | |
AACGGAGCTGATTATCGGAG+GGG | + | chr4.2:20766612-20766631 | None:intergenic | 50.0% | |
AAGTGATTGGAACGAGGGGA+AGG | + | chr4.2:20766529-20766548 | None:intergenic | 50.0% | |
ACGGAATCGTCGTCTAAGTG+AGG | + | chr4.2:20766502-20766521 | None:intergenic | 50.0% | |
ATGCAACCTCAGGTGCCAAT+CGG | - | chr4.2:20767602-20767621 | MS.gene28675:intron | 50.0% | |
CCGGTTCATATGCAAGGACA+TGG | - | chr4.2:20767542-20767561 | MS.gene28675:intron | 50.0% | |
CGGAATCGTCGTCTAAGTGA+GGG | + | chr4.2:20766501-20766520 | None:intergenic | 50.0% | |
GAAGAAGAAACAACCGGAGC+AGG | + | chr4.2:20767230-20767249 | None:intergenic | 50.0% | |
GGTTCAACCTGGGAATGTAC+CGG | - | chr4.2:20767523-20767542 | MS.gene28675:CDS | 50.0% | |
GTCCGCTTCATGTGCAGTTT+CGG | - | chr4.2:20766568-20766587 | MS.gene28675:CDS | 50.0% | |
GTTGTGGGTAGTGAAGTGCA+GGG | + | chr4.2:20767421-20767440 | None:intergenic | 50.0% | |
TACGGGTCAAGTGTATGGTG+CGG | - | chr4.2:20767646-20767665 | MS.gene28675:CDS | 50.0% | |
TCATCCAGTGATGCAACCTC+AGG | - | chr4.2:20767592-20767611 | MS.gene28675:intron | 50.0% | |
TTTGTGGACAAGAGCGGAGA+AGG | + | chr4.2:20766680-20766699 | None:intergenic | 50.0% | |
! | ATTCAGGGTTCGGTTCAACC+TGG | - | chr4.2:20767512-20767531 | MS.gene28675:CDS | 50.0% |
! | GCTTTAAACGGTGGCGTTTC+GGG | - | chr4.2:20767038-20767057 | MS.gene28675:CDS | 50.0% |
! | GTAACGGAGCTGATTATCGG+AGG | + | chr4.2:20766614-20766633 | None:intergenic | 50.0% |
! | TCATCATGCACAACCGGTTC+CGG | - | chr4.2:20767481-20767500 | MS.gene28675:CDS | 50.0% |
! | TTCAGGGTTCGGTTCAACCT+GGG | - | chr4.2:20767513-20767532 | MS.gene28675:CDS | 50.0% |
!! | AGGAGCGTCGTTGAAGTGAT+TGG | + | chr4.2:20766542-20766561 | None:intergenic | 50.0% |
AACCACCGTGGTAGGACTGT+AGG | + | chr4.2:20767699-20767718 | None:intergenic | 55.0% | |
AAGTGTATGGTGCGGGGATG+AGG | - | chr4.2:20767654-20767673 | MS.gene28675:CDS | 55.0% | |
AATCAGCTCCGTTACGTCGG+CGG | - | chr4.2:20766619-20766638 | MS.gene28675:CDS | 55.0% | |
ACCACCGTGGTAGGACTGTA+GGG | + | chr4.2:20767698-20767717 | None:intergenic | 55.0% | |
ACGGGTCAAGTGTATGGTGC+GGG | - | chr4.2:20767647-20767666 | MS.gene28675:CDS | 55.0% | |
AGGAGAACCCGGATCCGAAT+TGG | + | chr4.2:20767210-20767229 | None:intergenic | 55.0% | |
CAAACCATCGTGAACCACCG+TGG | + | chr4.2:20767711-20767730 | None:intergenic | 55.0% | |
CCATACACTTGACCCGTACC+CGG | + | chr4.2:20767644-20767663 | None:intergenic | 55.0% | |
CGCCGAAACTGCACATGAAG+CGG | + | chr4.2:20766573-20766592 | None:intergenic | 55.0% | |
CGCTTCATGTGCAGTTTCGG+CGG | - | chr4.2:20766571-20766590 | MS.gene28675:CDS | 55.0% | |
CGTCTCTTCCTCTTCCCAGA+AGG | - | chr4.2:20766942-20766961 | MS.gene28675:CDS | 55.0% | |
GAAGGAGATGGAGCGGTTGA+CGG | + | chr4.2:20766662-20766681 | None:intergenic | 55.0% | |
GACAAGAGCGGAGAAGGAGA+TGG | + | chr4.2:20766674-20766693 | None:intergenic | 55.0% | |
GGTTGTGGGTAGTGAAGTGC+AGG | + | chr4.2:20767422-20767441 | None:intergenic | 55.0% | |
GTAGGACTGTAGGGCTGAAC+CGG | + | chr4.2:20767689-20767708 | None:intergenic | 55.0% | |
GTGGTAAACCGGAACTGGAC+CGG | + | chr4.2:20767771-20767790 | None:intergenic | 55.0% | |
TAGGACTGTAGGGCTGAACC+GGG | + | chr4.2:20767688-20767707 | None:intergenic | 55.0% | |
TCAGCCCTACAGTCCTACCA+CGG | - | chr4.2:20767691-20767710 | MS.gene28675:CDS | 55.0% | |
TCCAGTTCCGGTTTACCACC+AGG | - | chr4.2:20767772-20767791 | MS.gene28675:CDS | 55.0% | |
TGAGCTGCAGAGAGGTGGAA+CGG | - | chr4.2:20767817-20767836 | MS.gene28675:CDS | 55.0% | |
TGATACCCGATTGGCACCTG+AGG | + | chr4.2:20767611-20767630 | None:intergenic | 55.0% | |
TGCAACCTCAGGTGCCAATC+GGG | - | chr4.2:20767603-20767622 | MS.gene28675:intron | 55.0% | |
!! | GGCGTTTCGGGTTTAGAACG+AGG | - | chr4.2:20767050-20767069 | MS.gene28675:CDS | 55.0% |
ACAACCGGAGCAGGAGAACC+CGG | + | chr4.2:20767221-20767240 | None:intergenic | 60.0% | |
AGACGAAGACGAGCTCCTCG+TGG | + | chr4.2:20766927-20766946 | None:intergenic | 60.0% | |
AGCGGTTGACGGCGACGATA+CGG | + | chr4.2:20766651-20766670 | None:intergenic | 60.0% | |
AGCTGATTATCGGAGGGGCG+AGG | + | chr4.2:20766607-20766626 | None:intergenic | 60.0% | |
AGGACTGTAGGGCTGAACCG+GGG | + | chr4.2:20767687-20767706 | None:intergenic | 60.0% | |
CACATGAAGCGGACACGTGG+AGG | + | chr4.2:20766562-20766581 | None:intergenic | 60.0% | |
CCATCGTGAACCACCGTGGT+AGG | + | chr4.2:20767707-20767726 | None:intergenic | 60.0% | |
CCGGGTACGGGTCAAGTGTA+TGG | - | chr4.2:20767641-20767660 | MS.gene28675:CDS | 60.0% | |
CCTACCACGGTGGTTCACGA+TGG | - | chr4.2:20767704-20767723 | MS.gene28675:CDS | 60.0% | |
CGGGTCAAGTGTATGGTGCG+GGG | - | chr4.2:20767648-20767667 | MS.gene28675:CDS | 60.0% | |
CTGCACATGAAGCGGACACG+TGG | + | chr4.2:20766565-20766584 | None:intergenic | 60.0% | |
GACGAAGACGAGCTCCTCGT+GGG | + | chr4.2:20766926-20766945 | None:intergenic | 60.0% | |
GAGCGGAGAAGGAGATGGAG+CGG | + | chr4.2:20766669-20766688 | None:intergenic | 60.0% | |
GAGCTGCAGAGAGGTGGAAC+GGG | - | chr4.2:20767818-20767837 | MS.gene28675:CDS | 60.0% | |
GCCATCGCCTGGTGGTAAAC+CGG | + | chr4.2:20767782-20767801 | None:intergenic | 60.0% | |
GCCTGGTGGTAAACCGGAAC+TGG | + | chr4.2:20767776-20767795 | None:intergenic | 60.0% | |
GCTGATTATCGGAGGGGCGA+GGG | + | chr4.2:20766606-20766625 | None:intergenic | 60.0% | |
GGAACGAGGGGAAGGAGAGA+CGG | + | chr4.2:20766521-20766540 | None:intergenic | 60.0% | |
GGCACCTGAGGTTGCATCAC+TGG | + | chr4.2:20767599-20767618 | None:intergenic | 60.0% | |
GGTTTACCACCAGGCGATGG+CGG | - | chr4.2:20767781-20767800 | MS.gene28675:CDS | 60.0% | |
GTTTACCACCAGGCGATGGC+GGG | - | chr4.2:20767782-20767801 | MS.gene28675:CDS | 60.0% | |
TCCGGTTTACCACCAGGCGA+TGG | - | chr4.2:20767778-20767797 | MS.gene28675:CDS | 60.0% | |
TGCAGAGAGGTGGAACGGGT+CGG | - | chr4.2:20767822-20767841 | MS.gene28675:CDS | 60.0% | |
TTTACCACCAGGCGATGGCG+GGG | - | chr4.2:20767783-20767802 | MS.gene28675:CDS | 60.0% | |
CAGAGAGGTGGAACGGGTCG+GGG | - | chr4.2:20767824-20767843 | MS.gene28675:CDS | 65.0% | |
GATTATCGGAGGGGCGAGGG+AGG | + | chr4.2:20766603-20766622 | None:intergenic | 65.0% | |
GCAGAGAGGTGGAACGGGTC+GGG | - | chr4.2:20767823-20767842 | MS.gene28675:CDS | 65.0% | |
GCCCTACAGTCCTACCACGG+TGG | - | chr4.2:20767694-20767713 | MS.gene28675:CDS | 65.0% | |
GCGGTTGACGGCGACGATAC+GGG | + | chr4.2:20766650-20766669 | None:intergenic | 65.0% | |
GGATCCGGGTTCTCCTGCTC+CGG | - | chr4.2:20767214-20767233 | MS.gene28675:CDS | 65.0% | |
GGGGATGAGCTGCAGAGAGG+TGG | - | chr4.2:20767812-20767831 | MS.gene28675:CDS | 65.0% | |
GGTGGGGATGAGCTGCAGAG+AGG | - | chr4.2:20767809-20767828 | MS.gene28675:CDS | 65.0% | |
TGGTGCGGGGATGAGGCATG+TGG | - | chr4.2:20767661-20767680 | MS.gene28675:CDS | 65.0% | |
GGGGATGAGGCATGTGGCCC+CGG | - | chr4.2:20767667-20767686 | MS.gene28675:CDS | 70.0% | |
! | GGGTGTCGCCGCCGACGTAA+CGG | + | chr4.2:20766630-20766649 | None:intergenic | 70.0% |
!! | AGGCGATGGCGGGGACTGGT+GGG | - | chr4.2:20767792-20767811 | MS.gene28675:CDS | 70.0% |
CACCAGTCCCCGCCATCGCC+TGG | + | chr4.2:20767793-20767812 | None:intergenic | 75.0% | |
CAGTCCCCGCCATCGCCTGG+TGG | + | chr4.2:20767790-20767809 | None:intergenic | 75.0% | |
!! | CACCAGGCGATGGCGGGGAC+TGG | - | chr4.2:20767788-20767807 | MS.gene28675:CDS | 75.0% |
!! | CAGGCGATGGCGGGGACTGG+TGG | - | chr4.2:20767791-20767810 | MS.gene28675:CDS | 75.0% |
!! | GGCGATGGCGGGGACTGGTG+GGG | - | chr4.2:20767793-20767812 | MS.gene28675:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 20766484 | 20767868 | 20766484 | ID=MS.gene28675 |
chr4.2 | mRNA | 20766484 | 20767868 | 20766484 | ID=MS.gene28675.t1;Parent=MS.gene28675 |
chr4.2 | exon | 20767637 | 20767868 | 20767637 | ID=MS.gene28675.t1.exon1;Parent=MS.gene28675.t1 |
chr4.2 | CDS | 20767637 | 20767868 | 20767637 | ID=cds.MS.gene28675.t1;Parent=MS.gene28675.t1 |
chr4.2 | exon | 20766484 | 20767556 | 20766484 | ID=MS.gene28675.t1.exon2;Parent=MS.gene28675.t1 |
chr4.2 | CDS | 20766484 | 20767556 | 20766484 | ID=cds.MS.gene28675.t1;Parent=MS.gene28675.t1 |
Gene Sequence |
Protein sequence |