Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28753.t1 | XP_013457254.1 | 96.2 | 394 | 13 | 1 | 18 | 409 | 1 | 394 | 1.40E-190 | 675.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28753.t1 | A0A072UZK1 | 96.2 | 394 | 13 | 1 | 18 | 409 | 1 | 394 | 1.0e-190 | 675.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058632 | MS.gene28753 | 0.857123 | 2.02E-62 | -1.69E-46 |
| MS.gene058634 | MS.gene28753 | 0.902901 | 6.03E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28753.t1 | MTR_4g094375 | 96.193 | 394 | 13 | 1 | 18 | 409 | 1 | 394 | 0.0 | 774 |
| MS.gene28753.t1 | MTR_1g098700 | 53.676 | 408 | 164 | 4 | 18 | 405 | 1 | 403 | 2.78e-155 | 444 |
| MS.gene28753.t1 | MTR_6g037000 | 53.887 | 373 | 161 | 5 | 35 | 401 | 9 | 376 | 1.84e-138 | 400 |
| MS.gene28753.t1 | MTR_6g036920 | 53.476 | 374 | 163 | 5 | 35 | 402 | 9 | 377 | 1.08e-133 | 389 |
| MS.gene28753.t1 | MTR_6g037010 | 48.387 | 341 | 145 | 3 | 61 | 401 | 9 | 318 | 3.50e-108 | 322 |
| MS.gene28753.t1 | MTR_8g098895 | 42.239 | 393 | 203 | 11 | 19 | 401 | 3 | 381 | 3.57e-82 | 257 |
| MS.gene28753.t1 | MTR_6g037060 | 53.659 | 205 | 84 | 5 | 35 | 233 | 9 | 208 | 1.74e-64 | 206 |
| MS.gene28753.t1 | MTR_6g036980 | 51.899 | 158 | 71 | 2 | 54 | 207 | 2 | 158 | 3.23e-48 | 162 |
| MS.gene28753.t1 | MTR_6g037070 | 53.030 | 132 | 61 | 1 | 273 | 403 | 1 | 132 | 1.25e-38 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28753.t1 | AT1G74450 | 54.020 | 398 | 163 | 5 | 18 | 402 | 1 | 391 | 1.48e-143 | 414 |
| MS.gene28753.t1 | AT1G18740 | 53.807 | 394 | 160 | 7 | 18 | 401 | 1 | 382 | 3.90e-143 | 412 |
| MS.gene28753.t1 | AT1G43630 | 52.174 | 391 | 169 | 8 | 17 | 402 | 30 | 407 | 9.63e-135 | 392 |
| MS.gene28753.t1 | AT1G63930 | 36.516 | 419 | 213 | 13 | 19 | 401 | 3 | 404 | 2.11e-84 | 264 |
| MS.gene28753.t1 | AT4G11300 | 37.245 | 392 | 212 | 9 | 19 | 401 | 3 | 369 | 1.78e-70 | 226 |
| MS.gene28753.t1 | AT4G23530 | 34.293 | 382 | 220 | 9 | 37 | 396 | 13 | 385 | 1.39e-52 | 181 |
Find 112 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGCGTCATAGATCTTT+TGG | 0.183195 | 4.3:-19802828 | MS.gene28753:CDS |
| AACGATCTGCAACACGCTTT+TGG | 0.237316 | 4.3:+19803228 | None:intergenic |
| GGGGTTTGGCTGAGGGTTGT+GGG | 0.263128 | 4.3:-19803403 | MS.gene28753:CDS |
| CATTGACCGAAGGGCAGTTT+AGG | 0.321777 | 4.3:-19802920 | MS.gene28753:CDS |
| AATGAGATTGCTGCAAATAA+AGG | 0.333425 | 4.3:-19802675 | MS.gene28753:CDS |
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4.3:-19802957 | MS.gene28753:CDS |
| TTCGGCTATCAACTATCTTT+CGG | 0.358993 | 4.3:+19802262 | None:intergenic |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4.3:+19802466 | None:intergenic |
| AGCTATTCCTTGTCAGGATA+GGG | 0.367717 | 4.3:-19802589 | MS.gene28753:CDS |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4.3:+19802544 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4.3:+19802378 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4.3:-19802595 | MS.gene28753:CDS |
| CAGCTATTCCTTGTCAGGAT+AGG | 0.380570 | 4.3:-19802590 | MS.gene28753:CDS |
| ATGAATTGCTCTCGATTGTT+TGG | 0.386757 | 4.3:-19803178 | MS.gene28753:CDS |
| CTTTCTTCTTTGACTCGTCC+AGG | 0.391519 | 4.3:+19802493 | None:intergenic |
| ATGATTGATGAGAAAGAATC+AGG | 0.391748 | 4.3:-19802861 | MS.gene28753:CDS |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4.3:+19802549 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4.3:-19802979 | MS.gene28753:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4.3:+19802543 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4.3:-19802364 | MS.gene28753:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4.3:+19802499 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4.3:+19802371 | None:intergenic |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4.3:+19802291 | None:intergenic |
| AAGTGTTGTGAGGATCTTGA+GGG | 0.433490 | 4.3:-19803425 | MS.gene28753:CDS |
| TCATTTGGTAGATCGTTGTT+TGG | 0.434869 | 4.3:-19803326 | MS.gene28753:CDS |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4.3:-19802307 | MS.gene28753:CDS |
| GGCATTCAAGATCACATTCA+TGG | 0.437225 | 4.3:-19802770 | MS.gene28753:CDS |
| TGCAATGGACTGTAGTTGCT+TGG | 0.438495 | 4.3:+19802722 | None:intergenic |
| CTAAACTGCCCTTCGGTCAA+TGG | 0.439271 | 4.3:+19802921 | None:intergenic |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4.3:-19802222 | MS.gene28753:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4.3:-19802424 | MS.gene28753:CDS |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4.3:-19802548 | MS.gene28753:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4.3:-19802355 | MS.gene28753:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4.3:+19803106 | None:intergenic |
| CATTTGCACGAGGTGGAACC+AGG | 0.462052 | 4.3:+19802694 | None:intergenic |
| GCAGTTTAGGAGGGCGAGAA+AGG | 0.470954 | 4.3:-19802907 | MS.gene28753:CDS |
| GTTTGGTATGAGGCAGGACC+AGG | 0.472376 | 4.3:-19803309 | MS.gene28753:CDS |
| ATGAGATTGCTGCAAATAAA+GGG | 0.480948 | 4.3:-19802674 | MS.gene28753:CDS |
| CGCCCTCCTAAACTGCCCTT+CGG | 0.482592 | 4.3:+19802914 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4.3:+19802244 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4.3:+19803067 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4.3:-19802511 | MS.gene28753:CDS |
| ATCGTTGTTTGGTATGAGGC+AGG | 0.489438 | 4.3:-19803315 | MS.gene28753:CDS |
| CATGGAGTGTCTCTAGGTCC+TGG | 0.490607 | 4.3:-19802752 | MS.gene28753:CDS |
| TGTGGAAGCAAGTCATGAAC+CGG | 0.491995 | 4.3:-19803279 | MS.gene28753:CDS |
| TAGTTGCTTGGCTGCAGACC+AGG | 0.494155 | 4.3:+19802734 | None:intergenic |
| GTAGATCGTTGTTTGGTATG+AGG | 0.498240 | 4.3:-19803319 | MS.gene28753:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4.3:-19802240 | MS.gene28753:CDS |
| TGACCGAAGGGCAGTTTAGG+AGG | 0.504334 | 4.3:-19802917 | MS.gene28753:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4.3:-19803014 | MS.gene28753:CDS |
| TGTTGTGAGGATCTTGAGGG+GGG | 0.508475 | 4.3:-19803422 | MS.gene28753:CDS |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4.3:-19802376 | MS.gene28753:CDS |
| GTGTTGTGAGGATCTTGAGG+GGG | 0.515488 | 4.3:-19803423 | MS.gene28753:CDS |
| GACGAAAACGATGAAGAAGA+AGG | 0.517630 | 4.3:+19803347 | None:intergenic |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4.3:-19803013 | MS.gene28753:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4.3:+19802416 | None:intergenic |
| GATTCGTGTAATCTAGAGCT+TGG | 0.523932 | 4.3:-19803257 | MS.gene28753:CDS |
| CGAGAGCAATTCATAATCAC+TGG | 0.525583 | 4.3:+19803187 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4.3:-19802418 | MS.gene28753:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4.3:-19803023 | MS.gene28753:CDS |
| TGGAACCAGGTTATTTGCAA+TGG | 0.532348 | 4.3:+19802707 | None:intergenic |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4.3:-19802292 | MS.gene28753:CDS |
| AGCTCTAGATTACACGAATC+CGG | 0.535203 | 4.3:+19803260 | None:intergenic |
| TAAGTGTTGTGAGGATCTTG+AGG | 0.535774 | 4.3:-19803426 | None:intergenic |
| GAGGGCGAGAAAGGCACTGA+TGG | 0.537995 | 4.3:-19802898 | MS.gene28753:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4.3:-19802463 | MS.gene28753:CDS |
| CACATTCATGGAGTGTCTCT+AGG | 0.544575 | 4.3:-19802758 | MS.gene28753:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4.3:-19803051 | MS.gene28753:CDS |
| GCTATTCCTTGTCAGGATAG+GGG | 0.548433 | 4.3:-19802588 | MS.gene28753:CDS |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4.3:-19802518 | MS.gene28753:CDS |
| GGCACTGATGGATTTAGCAC+TGG | 0.556578 | 4.3:-19802886 | MS.gene28753:CDS |
| ACAAGGAATAGCTGCAACAA+GGG | 0.556963 | 4.3:+19802599 | None:intergenic |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4.3:+19802400 | None:intergenic |
| ATAGTTGATAGCCGAACTGA+GGG | 0.570229 | 4.3:-19802255 | MS.gene28753:CDS |
| GACCGAAGGGCAGTTTAGGA+GGG | 0.570937 | 4.3:-19802916 | MS.gene28753:CDS |
| GACAAGGAATAGCTGCAACA+AGG | 0.579699 | 4.3:+19802598 | None:intergenic |
| ACGAAAACGATGAAGAAGAA+GGG | 0.593698 | 4.3:+19803348 | None:intergenic |
| TTGCTTCCACAGAATGAACC+TGG | 0.596071 | 4.3:+19803291 | None:intergenic |
| GTTTGTGAGAATGCCTTCCA+CGG | 0.596488 | 4.3:-19803381 | MS.gene28753:CDS |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4.3:-19802289 | MS.gene28753:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4.3:-19802293 | MS.gene28753:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4.3:+19803068 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4.3:+19802419 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4.3:-19803024 | MS.gene28753:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4.3:+19802415 | None:intergenic |
| AGTGTTGTGAGGATCTTGAG+GGG | 0.604776 | 4.3:-19803424 | MS.gene28753:CDS |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4.3:+19802223 | None:intergenic |
| AGTCAAAGAAGAAAGAGCAC+CGG | 0.610994 | 4.3:-19802485 | MS.gene28753:CDS |
| GCAGGACCAGGTTCATTCTG+TGG | 0.612935 | 4.3:-19803297 | MS.gene28753:CDS |
| ATAAGCGACCATTGACCGAA+GGG | 0.613621 | 4.3:-19802929 | MS.gene28753:CDS |
| TGGGAGGCATAACTCGAGCA+AGG | 0.614020 | 4.3:-19802808 | MS.gene28753:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4.3:-19803045 | MS.gene28753:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4.3:+19803123 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4.3:+19802280 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4.3:-19802992 | MS.gene28753:CDS |
| GCAATCTCATTTGCACGAGG+TGG | 0.622309 | 4.3:+19802687 | None:intergenic |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4.3:+19802224 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4.3:-19803084 | MS.gene28753:CDS |
| AAAGAGCACCGGAACTCAAG+CGG | 0.627839 | 4.3:-19802474 | MS.gene28753:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4.3:+19802512 | None:intergenic |
| GACTCTGGTTAAGTGTTGTG+AGG | 0.629582 | 4.3:-19803435 | None:intergenic |
| GATAGTTGATAGCCGAACTG+AGG | 0.632654 | 4.3:-19802256 | MS.gene28753:CDS |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4.3:+19802412 | None:intergenic |
| ACAGTCCATTGCAAATAACC+TGG | 0.633958 | 4.3:-19802712 | MS.gene28753:CDS |
| GCAAGGATAGTCATTCGACT+AGG | 0.636083 | 4.3:-19802791 | MS.gene28753:CDS |
| AATAAGCGACCATTGACCGA+AGG | 0.639297 | 4.3:-19802930 | MS.gene28753:CDS |
| TTTAAACCCCTATCCTGACA+AGG | 0.658776 | 4.3:+19802582 | None:intergenic |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4.3:-19802221 | MS.gene28753:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4.3:-19803055 | MS.gene28753:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4.3:+19803071 | None:intergenic |
| GCAGCAATCTCATTTGCACG+AGG | 0.681247 | 4.3:+19802684 | None:intergenic |
| TAGTTGATAGCCGAACTGAG+GGG | 0.803639 | 4.3:-19802254 | MS.gene28753:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATTATTCAACAGAA+TGG | + | chr4.3:19802534-19802553 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAATGAACTTTCT+GGG | - | chr4.3:19802426-19802445 | MS.gene28753:CDS | 25.0% |
| AACTTCCATTACATGTTCTT+CGG | + | chr4.3:19803269-19803288 | None:intergenic | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | - | chr4.3:19802962-19802981 | MS.gene28753:CDS | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | - | chr4.3:19802963-19802982 | MS.gene28753:CDS | 30.0% | |
| ATGATTGATGAGAAAGAATC+AGG | - | chr4.3:19802776-19802795 | MS.gene28753:CDS | 30.0% | |
| !! | GATCGTTTTAATGAACTTTC+TGG | - | chr4.3:19802425-19802444 | MS.gene28753:CDS | 30.0% |
| !! | TCGTTTTAATGAACTTTCTG+GGG | - | chr4.3:19802427-19802446 | MS.gene28753:CDS | 30.0% |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | - | chr4.3:19803014-19803033 | MS.gene28753:CDS | 30.0% |
| ACGAAAACGATGAAGAAGAA+GGG | + | chr4.3:19802292-19802311 | None:intergenic | 35.0% | |
| ATCTGAATTCATTGAGAGGT+CGG | - | chr4.3:19802586-19802605 | MS.gene28753:CDS | 35.0% | |
| ATGAATTGCTCTCGATTGTT+TGG | - | chr4.3:19802459-19802478 | MS.gene28753:CDS | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | + | chr4.3:19803262-19803281 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | - | chr4.3:19803261-19803280 | MS.gene28753:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | - | chr4.3:19802680-19802699 | MS.gene28753:CDS | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | + | chr4.3:19803097-19803116 | None:intergenic | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | + | chr4.3:19803096-19803115 | None:intergenic | 35.0% | |
| TCATTTGGTAGATCGTTGTT+TGG | - | chr4.3:19802311-19802330 | MS.gene28753:CDS | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | - | chr4.3:19802582-19802601 | MS.gene28753:CDS | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | + | chr4.3:19803416-19803435 | None:intergenic | 35.0% | |
| TTCGGCTATCAACTATCTTT+CGG | + | chr4.3:19803378-19803397 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | - | chr4.3:19803416-19803435 | MS.gene28753:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | - | chr4.3:19803273-19803292 | MS.gene28753:CDS | 35.0% |
| ! | TCTTCATCGTTTTCGTCATT+TGG | - | chr4.3:19802296-19802315 | MS.gene28753:CDS | 35.0% |
| ACAAGGAATAGCTGCAACAA+GGG | + | chr4.3:19803041-19803060 | None:intergenic | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | - | chr4.3:19802925-19802944 | MS.gene28753:CDS | 40.0% | |
| AGCTATTCCTTGTCAGGATA+GGG | - | chr4.3:19803048-19803067 | MS.gene28753:CDS | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | - | chr4.3:19803089-19803108 | MS.gene28753:CDS | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | + | chr4.3:19803091-19803110 | None:intergenic | 40.0% | |
| CGAGAGCAATTCATAATCAC+TGG | + | chr4.3:19802453-19802472 | None:intergenic | 40.0% | |
| CTGTATAGTTTGATGTGCCA+AGG | + | chr4.3:19803417-19803436 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | - | chr4.3:19803415-19803434 | MS.gene28753:CDS | 40.0% | |
| GACGAAAACGATGAAGAAGA+AGG | + | chr4.3:19802293-19802312 | None:intergenic | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | - | chr4.3:19802614-19802633 | MS.gene28753:CDS | 40.0% | |
| GGAAGTTGAACAGGATTTGA+AGG | - | chr4.3:19803282-19803301 | MS.gene28753:CDS | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | - | chr4.3:19802613-19802632 | MS.gene28753:CDS | 40.0% | |
| GGCATTCAAGATCACATTCA+TGG | - | chr4.3:19802867-19802886 | MS.gene28753:CDS | 40.0% | |
| GTAGATCGTTGTTTGGTATG+AGG | - | chr4.3:19802318-19802337 | MS.gene28753:CDS | 40.0% | |
| TCAGATGTCATACGATCCAT+GGG | + | chr4.3:19802572-19802591 | None:intergenic | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | + | chr4.3:19802933-19802952 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | + | chr4.3:19802573-19802592 | None:intergenic | 40.0% | |
| TTTAAACCCCTATCCTGACA+AGG | + | chr4.3:19803058-19803077 | None:intergenic | 40.0% | |
| ! | AGTCAAAGAAGAAAGAGCAC+CGG | - | chr4.3:19803152-19803171 | MS.gene28753:CDS | 40.0% |
| ! | CTCAGCGTCATAGATCTTTT+GGG | - | chr4.3:19802810-19802829 | MS.gene28753:CDS | 40.0% |
| ! | GATTCGTGTAATCTAGAGCT+TGG | - | chr4.3:19802380-19802399 | MS.gene28753:CDS | 40.0% |
| ! | TCTCAGCGTCATAGATCTTT+TGG | - | chr4.3:19802809-19802828 | MS.gene28753:CDS | 40.0% |
| !! | AGCTCTAGATTACACGAATC+CGG | + | chr4.3:19802380-19802399 | None:intergenic | 40.0% |
| !! | ATAGTTGATAGCCGAACTGA+GGG | - | chr4.3:19803382-19803401 | MS.gene28753:CDS | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | - | chr4.3:19803317-19803336 | MS.gene28753:CDS | 40.0% |
| !! | GAATGGCTCTGAATTCATCA+TGG | + | chr4.3:19802517-19802536 | None:intergenic | 40.0% |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | - | chr4.3:19803316-19803335 | MS.gene28753:CDS | 40.0% |
| AATAAGCGACCATTGACCGA+AGG | - | chr4.3:19802707-19802726 | MS.gene28753:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | - | chr4.3:19802708-19802727 | MS.gene28753:CDS | 45.0% | |
| ATCGTTGTTTGGTATGAGGC+AGG | - | chr4.3:19802322-19802341 | MS.gene28753:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | - | chr4.3:19802592-19802611 | MS.gene28753:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | - | chr4.3:19802623-19802642 | MS.gene28753:CDS | 45.0% | |
| CAGCTATTCCTTGTCAGGAT+AGG | - | chr4.3:19803047-19803066 | MS.gene28753:CDS | 45.0% | |
| GAAACTGAGCAGAATCTACC+AGG | + | chr4.3:19803240-19803259 | None:intergenic | 45.0% | |
| GACAAGGAATAGCTGCAACA+AGG | + | chr4.3:19803042-19803061 | None:intergenic | 45.0% | |
| GCAAGGATAGTCATTCGACT+AGG | - | chr4.3:19802846-19802865 | MS.gene28753:CDS | 45.0% | |
| GCTATTCCTTGTCAGGATAG+GGG | - | chr4.3:19803049-19803068 | MS.gene28753:CDS | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | - | chr4.3:19802645-19802664 | MS.gene28753:CDS | 45.0% | |
| GTTTGTGAGAATGCCTTCCA+CGG | - | chr4.3:19802256-19802275 | MS.gene28753:CDS | 45.0% | |
| TCAGTTATCGAAACCTCCCA+TGG | - | chr4.3:19802553-19802572 | MS.gene28753:CDS | 45.0% | |
| TGTGGAAGCAAGTCATGAAC+CGG | - | chr4.3:19802358-19802377 | MS.gene28753:CDS | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | - | chr4.3:19803042-19803061 | MS.gene28753:CDS | 45.0% | |
| TTGCTTCCACAGAATGAACC+TGG | + | chr4.3:19802349-19802368 | None:intergenic | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | - | chr4.3:19802624-19802643 | MS.gene28753:CDS | 45.0% | |
| ! | AACGATCTGCAACACGCTTT+TGG | + | chr4.3:19802412-19802431 | None:intergenic | 45.0% |
| ! | AGCGTCATAGATCTTTTGGG+AGG | - | chr4.3:19802813-19802832 | MS.gene28753:CDS | 45.0% |
| ! | CACATTCATGGAGTGTCTCT+AGG | - | chr4.3:19802879-19802898 | MS.gene28753:CDS | 45.0% |
| ! | CTTTCTTCTTTGACTCGTCC+AGG | + | chr4.3:19803147-19803166 | None:intergenic | 45.0% |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | - | chr4.3:19803321-19803340 | MS.gene28753:CDS | 45.0% |
| !! | GATAGTTGATAGCCGAACTG+AGG | - | chr4.3:19803381-19803400 | MS.gene28753:CDS | 45.0% |
| !! | TAGTTGATAGCCGAACTGAG+GGG | - | chr4.3:19803383-19803402 | MS.gene28753:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | + | chr4.3:19802918-19802937 | None:intergenic | 45.0% |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | + | chr4.3:19802661-19802680 | None:intergenic | 45.0% |
| AATCTACCAGGTCCGTCAAG+TGG | + | chr4.3:19803228-19803247 | None:intergenic | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | - | chr4.3:19803119-19803138 | MS.gene28753:CDS | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | - | chr4.3:19802717-19802736 | MS.gene28753:CDS | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | - | chr4.3:19802658-19802677 | MS.gene28753:CDS | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | + | chr4.3:19802719-19802738 | None:intergenic | 50.0% | |
| GATGTCATACGATCCATGGG+AGG | + | chr4.3:19802569-19802588 | None:intergenic | 50.0% | |
| GCAATCTCATTTGCACGAGG+TGG | + | chr4.3:19802953-19802972 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | + | chr4.3:19802956-19802975 | None:intergenic | 50.0% | |
| TGTTGTGAGGATCTTGAGGG+GGG | - | chr4.3:19802215-19802234 | MS.gene28753:CDS | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | + | chr4.3:19803141-19803160 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | - | chr4.3:19803163-19803182 | MS.gene28753:CDS | 50.0% |
| !! | AGAAGGGCTCTGATTTTCCG+TGG | + | chr4.3:19802276-19802295 | None:intergenic | 50.0% |
| !! | GGCACTGATGGATTTAGCAC+TGG | - | chr4.3:19802751-19802770 | MS.gene28753:CDS | 50.0% |
| !! | TAGAGACGGGTTGGATCCAT+TGG | - | chr4.3:19803330-19803349 | MS.gene28753:CDS | 50.0% |
| ACTGAGGGGCTTGATTCCCT+TGG | - | chr4.3:19803397-19803416 | MS.gene28753:CDS | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | + | chr4.3:19803128-19803147 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | + | chr4.3:19802946-19802965 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | - | chr4.3:19803126-19803145 | MS.gene28753:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | - | chr4.3:19802721-19802740 | MS.gene28753:CDS | 55.0% | |
| GCAGGACCAGGTTCATTCTG+TGG | - | chr4.3:19802340-19802359 | MS.gene28753:CDS | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | - | chr4.3:19802730-19802749 | MS.gene28753:CDS | 55.0% | |
| GGGAATCAAGCCCCTCAGTT+CGG | + | chr4.3:19803396-19803415 | None:intergenic | 55.0% | |
| GTTTGGTATGAGGCAGGACC+AGG | - | chr4.3:19802328-19802347 | MS.gene28753:CDS | 55.0% | |
| TAGTTGCTTGGCTGCAGACC+AGG | + | chr4.3:19802906-19802925 | None:intergenic | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | + | chr4.3:19803174-19803193 | None:intergenic | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | - | chr4.3:19802720-19802739 | MS.gene28753:CDS | 55.0% | |
| TGAGGATCTTGAGGGGGGTT+TGG | - | chr4.3:19802220-19802239 | MS.gene28753:CDS | 55.0% | |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | - | chr4.3:19802885-19802904 | MS.gene28753:CDS | 55.0% |
| ! | TGGGAGGCATAACTCGAGCA+AGG | - | chr4.3:19802829-19802848 | MS.gene28753:CDS | 55.0% |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | - | chr4.3:19803174-19803193 | MS.gene28753:CDS | 55.0% |
| !! | GGGCTCTGATTTTCCGTGGA+AGG | + | chr4.3:19802272-19802291 | None:intergenic | 55.0% |
| CGCCCTCCTAAACTGCCCTT+CGG | + | chr4.3:19802726-19802745 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | + | chr4.3:19803225-19803244 | None:intergenic | 60.0% | |
| CTTGAGGGGGGTTTGGCTGA+GGG | - | chr4.3:19802227-19802246 | MS.gene28753:CDS | 60.0% | |
| GGGGTTTGGCTGAGGGTTGT+GGG | - | chr4.3:19802234-19802253 | MS.gene28753:CDS | 60.0% | |
| TACCAGGTCCGTCAAGTGGC+GGG | + | chr4.3:19803224-19803243 | None:intergenic | 60.0% | |
| TCTTGAGGGGGGTTTGGCTG+AGG | - | chr4.3:19802226-19802245 | MS.gene28753:CDS | 60.0% | |
| TTCGGAACACCTCCCTCACG+TGG | + | chr4.3:19803360-19803379 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | - | chr4.3:19803344-19803363 | MS.gene28753:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | - | chr4.3:19803345-19803364 | MS.gene28753:CDS | 60.0% |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | - | chr4.3:19802739-19802758 | MS.gene28753:CDS | 60.0% |
| GACAGCCACCCGCCACTTGA+CGG | - | chr4.3:19803213-19803232 | MS.gene28753:CDS | 65.0% | |
| GGGGGTTTGGCTGAGGGTTG+TGG | - | chr4.3:19802233-19802252 | MS.gene28753:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | + | chr4.3:19803349-19803368 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | - | chr4.3:19803348-19803367 | MS.gene28753:CDS | 65.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | - | chr4.3:19803219-19803238 | MS.gene28753:CDS | 70.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | + | chr4.3:19803221-19803240 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19802215 | 19803444 | 19802215 | ID=MS.gene28753 |
| chr4.3 | mRNA | 19802215 | 19803444 | 19802215 | ID=MS.gene28753.t1;Parent=MS.gene28753 |
| chr4.3 | exon | 19802215 | 19803444 | 19802215 | ID=MS.gene28753.t1.exon1;Parent=MS.gene28753.t1 |
| chr4.3 | CDS | 19802215 | 19803444 | 19802215 | ID=cds.MS.gene28753.t1;Parent=MS.gene28753.t1 |
| Gene Sequence |
| Protein sequence |
