Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058632.t1 | XP_013457254.1 | 96.4 | 394 | 12 | 1 | 18 | 409 | 1 | 394 | 1.30E-191 | 679.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058632.t1 | A0A072UZK1 | 96.4 | 394 | 12 | 1 | 18 | 409 | 1 | 394 | 9.2e-192 | 679.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058632 | MS.gene058634 | 0.886934 | 2.22E-72 | -1.69E-46 |
| MS.gene058632 | MS.gene28753 | 0.857123 | 2.02E-62 | -1.69E-46 |
| MS.gene058632 | MS.gene28755 | 0.866062 | 3.75E-65 | -1.69E-46 |
| MS.gene058632 | MS.gene35070 | 0.902516 | 8.96E-79 | -1.69E-46 |
| MS.gene058632 | MS.gene35072 | 0.891078 | 5.51E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058632.t1 | MTR_4g094375 | 96.447 | 394 | 12 | 1 | 18 | 409 | 1 | 394 | 0.0 | 778 |
| MS.gene058632.t1 | MTR_1g098700 | 53.676 | 408 | 164 | 4 | 18 | 405 | 1 | 403 | 1.43e-155 | 445 |
| MS.gene058632.t1 | MTR_6g037000 | 53.887 | 373 | 161 | 5 | 35 | 401 | 9 | 376 | 1.18e-138 | 401 |
| MS.gene058632.t1 | MTR_6g036920 | 53.476 | 374 | 163 | 5 | 35 | 402 | 9 | 377 | 6.11e-134 | 389 |
| MS.gene058632.t1 | MTR_6g037010 | 48.387 | 341 | 145 | 3 | 61 | 401 | 9 | 318 | 1.75e-108 | 323 |
| MS.gene058632.t1 | MTR_8g098895 | 42.239 | 393 | 203 | 11 | 19 | 401 | 3 | 381 | 1.85e-82 | 258 |
| MS.gene058632.t1 | MTR_6g037060 | 53.659 | 205 | 84 | 5 | 35 | 233 | 9 | 208 | 1.16e-64 | 206 |
| MS.gene058632.t1 | MTR_6g036980 | 51.899 | 158 | 71 | 2 | 54 | 207 | 2 | 158 | 2.20e-48 | 162 |
| MS.gene058632.t1 | MTR_6g037070 | 53.030 | 132 | 61 | 1 | 273 | 403 | 1 | 132 | 1.65e-38 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058632.t1 | AT1G74450 | 54.020 | 398 | 163 | 5 | 18 | 402 | 1 | 391 | 3.18e-144 | 416 |
| MS.gene058632.t1 | AT1G18740 | 53.807 | 394 | 160 | 7 | 18 | 401 | 1 | 382 | 1.01e-143 | 414 |
| MS.gene058632.t1 | AT1G43630 | 52.174 | 391 | 169 | 8 | 17 | 402 | 30 | 407 | 2.50e-135 | 394 |
| MS.gene058632.t1 | AT1G63930 | 36.516 | 419 | 213 | 13 | 19 | 401 | 3 | 404 | 3.66e-84 | 263 |
| MS.gene058632.t1 | AT4G11300 | 37.245 | 392 | 212 | 9 | 19 | 401 | 3 | 369 | 7.78e-71 | 227 |
| MS.gene058632.t1 | AT4G23530 | 34.293 | 382 | 220 | 9 | 37 | 396 | 13 | 385 | 8.13e-53 | 181 |
Find 112 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGCGTCATAGATCTTT+TGG | 0.183195 | 4.2:+18440515 | MS.gene058632:CDS |
| AACGATCTGCAACACGCTTT+TGG | 0.237316 | 4.2:-18440115 | None:intergenic |
| GGGGTTTGGCTGAGGGTTGT+GGG | 0.263128 | 4.2:+18439940 | MS.gene058632:CDS |
| CATTGACCGAAGGGCAGTTT+AGG | 0.321777 | 4.2:+18440423 | MS.gene058632:CDS |
| AATGAGATTGCTGCAAATAA+AGG | 0.333425 | 4.2:+18440668 | MS.gene058632:CDS |
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4.2:+18440386 | MS.gene058632:CDS |
| TTCGGCTATCAACTATCTTT+CGG | 0.358993 | 4.2:-18441081 | None:intergenic |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4.2:-18440877 | None:intergenic |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4.2:-18440799 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4.2:-18440965 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4.2:+18440748 | MS.gene058632:CDS |
| CAGCTATTCCTTGTCAGGAC+AGG | 0.387126 | 4.2:+18440753 | MS.gene058632:CDS |
| CTTTCTTCTTTGACTCGTCC+AGG | 0.391519 | 4.2:-18440850 | None:intergenic |
| ATGATTGATGAGAAAGAATC+AGG | 0.391748 | 4.2:+18440482 | MS.gene058632:CDS |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4.2:-18440794 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4.2:+18440364 | MS.gene058632:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4.2:-18440800 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4.2:+18440979 | MS.gene058632:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4.2:-18440844 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4.2:-18440972 | None:intergenic |
| ATGAATTGCTCTCGATTGAT+TGG | 0.412007 | 4.2:+18440165 | MS.gene058632:CDS |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4.2:-18441052 | None:intergenic |
| AAGTGTTGTGAGGATCTTGA+GGG | 0.433490 | 4.2:+18439918 | None:intergenic |
| TCATTTGGTAGATCGTTGTT+TGG | 0.434869 | 4.2:+18440017 | MS.gene058632:CDS |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4.2:+18441036 | MS.gene058632:CDS |
| GGCATTCAAGATCACATTCA+TGG | 0.437225 | 4.2:+18440573 | MS.gene058632:CDS |
| TGCAATGGACTGTAGTTGCT+TGG | 0.438495 | 4.2:-18440621 | None:intergenic |
| CTAAACTGCCCTTCGGTCAA+TGG | 0.439271 | 4.2:-18440422 | None:intergenic |
| AGCTATTCCTTGTCAGGACA+GGG | 0.440449 | 4.2:+18440754 | MS.gene058632:CDS |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4.2:+18441121 | MS.gene058632:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4.2:+18440919 | MS.gene058632:CDS |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4.2:+18440795 | MS.gene058632:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4.2:+18440988 | MS.gene058632:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4.2:-18440237 | None:intergenic |
| CATTTGCACGAGGTGGAACC+AGG | 0.462052 | 4.2:-18440649 | None:intergenic |
| GCAGTTTAGGAGGGCGAGAA+AGG | 0.470954 | 4.2:+18440436 | MS.gene058632:CDS |
| GTTTGGTATGAGGCAGGACC+AGG | 0.472376 | 4.2:+18440034 | MS.gene058632:CDS |
| ATGAGATTGCTGCAAATAAA+GGG | 0.480948 | 4.2:+18440669 | MS.gene058632:CDS |
| CGCCCTCCTAAACTGCCCTT+CGG | 0.482592 | 4.2:-18440429 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4.2:-18441099 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4.2:-18440276 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4.2:+18440832 | MS.gene058632:CDS |
| ATCGTTGTTTGGTATGAGGC+AGG | 0.489438 | 4.2:+18440028 | MS.gene058632:CDS |
| CATGGAGTGTCTCTAGGTCC+TGG | 0.490607 | 4.2:+18440591 | MS.gene058632:CDS |
| TGTGGAAGCAAGTCATGAAC+CGG | 0.491995 | 4.2:+18440064 | MS.gene058632:CDS |
| TAGTTGCTTGGCTGCAGACC+AGG | 0.494155 | 4.2:-18440609 | None:intergenic |
| GTAGATCGTTGTTTGGTATG+AGG | 0.498240 | 4.2:+18440024 | MS.gene058632:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4.2:+18441103 | MS.gene058632:CDS |
| TGACCGAAGGGCAGTTTAGG+AGG | 0.504334 | 4.2:+18440426 | MS.gene058632:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4.2:+18440329 | MS.gene058632:CDS |
| TGTTGTGAGGATCTTGAGGG+GGG | 0.508475 | 4.2:+18439921 | MS.gene058632:CDS |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4.2:+18440967 | MS.gene058632:CDS |
| GTGTTGTGAGGATCTTGAGG+GGG | 0.515488 | 4.2:+18439920 | None:intergenic |
| GACGAAAACGATGAAGAAGA+AGG | 0.517630 | 4.2:-18439996 | None:intergenic |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4.2:+18440330 | MS.gene058632:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4.2:-18440927 | None:intergenic |
| GATTCGTGTAATCTAGAGCT+TGG | 0.523932 | 4.2:+18440086 | MS.gene058632:CDS |
| CGAGAGCAATTCATAATCAC+TGG | 0.525583 | 4.2:-18440156 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4.2:+18440925 | MS.gene058632:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4.2:+18440320 | MS.gene058632:CDS |
| TGGAACCAGGTTATTTGCAA+TGG | 0.532348 | 4.2:-18440636 | None:intergenic |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4.2:+18441051 | MS.gene058632:CDS |
| AGCTCTAGATTACACGAATC+CGG | 0.535203 | 4.2:-18440083 | None:intergenic |
| TAAGTGTTGTGAGGATCTTG+AGG | 0.535774 | 4.2:+18439917 | None:intergenic |
| GAGGGCGAGAAAGGCACTGA+TGG | 0.537995 | 4.2:+18440445 | MS.gene058632:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4.2:+18440880 | MS.gene058632:CDS |
| CACATTCATGGAGTGTCTCT+AGG | 0.544575 | 4.2:+18440585 | MS.gene058632:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4.2:+18440292 | MS.gene058632:CDS |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4.2:+18440825 | MS.gene058632:CDS |
| GGCACTGATGGATTTAGCAC+TGG | 0.556578 | 4.2:+18440457 | MS.gene058632:CDS |
| ACAAGGAATAGCTGCAACAA+GGG | 0.556963 | 4.2:-18440744 | None:intergenic |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4.2:-18440943 | None:intergenic |
| ATAGTTGATAGCCGAACTGA+GGG | 0.570229 | 4.2:+18441088 | MS.gene058632:CDS |
| GACCGAAGGGCAGTTTAGGA+GGG | 0.570937 | 4.2:+18440427 | MS.gene058632:CDS |
| GACAAGGAATAGCTGCAACA+AGG | 0.579699 | 4.2:-18440745 | None:intergenic |
| ACGAAAACGATGAAGAAGAA+GGG | 0.593698 | 4.2:-18439995 | None:intergenic |
| TTGCTTCCACAGAATGAACC+TGG | 0.596071 | 4.2:-18440052 | None:intergenic |
| GTTTGTGAGAATGCCTTCCA+CGG | 0.596488 | 4.2:+18439962 | MS.gene058632:CDS |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4.2:+18441054 | MS.gene058632:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4.2:+18441050 | MS.gene058632:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4.2:-18440275 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4.2:-18440924 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4.2:+18440319 | MS.gene058632:CDS |
| GCTATTCCTTGTCAGGACAG+GGG | 0.604712 | 4.2:+18440755 | MS.gene058632:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4.2:-18440928 | None:intergenic |
| AGTGTTGTGAGGATCTTGAG+GGG | 0.604776 | 4.2:+18439919 | None:intergenic |
| TTTAAACCCCTGTCCTGACA+AGG | 0.605039 | 4.2:-18440761 | None:intergenic |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4.2:-18441120 | None:intergenic |
| AGTCAAAGAAGAAAGAGCAC+CGG | 0.610994 | 4.2:+18440858 | MS.gene058632:CDS |
| GCAGGACCAGGTTCATTCTG+TGG | 0.612935 | 4.2:+18440046 | MS.gene058632:CDS |
| ATAAGCGACCATTGACCGAA+GGG | 0.613621 | 4.2:+18440414 | MS.gene058632:CDS |
| TGGGAGGCATAACTCGAGCA+AGG | 0.614020 | 4.2:+18440535 | MS.gene058632:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4.2:+18440298 | MS.gene058632:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4.2:-18440220 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4.2:-18441063 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4.2:+18440351 | MS.gene058632:CDS |
| GCAATCTCATTTGCACGAGG+TGG | 0.622309 | 4.2:-18440656 | None:intergenic |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4.2:-18441119 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4.2:+18440259 | MS.gene058632:CDS |
| AAAGAGCACCGGAACTCAAG+CGG | 0.627839 | 4.2:+18440869 | MS.gene058632:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4.2:-18440831 | None:intergenic |
| GACTCTGGTTAAGTGTTGTG+AGG | 0.629582 | 4.2:+18439908 | None:intergenic |
| GATAGTTGATAGCCGAACTG+AGG | 0.632654 | 4.2:+18441087 | MS.gene058632:CDS |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4.2:-18440931 | None:intergenic |
| ACAGTCCATTGCAAATAACC+TGG | 0.633958 | 4.2:+18440631 | MS.gene058632:CDS |
| GCAAGGATAGTCATTCGACT+AGG | 0.636083 | 4.2:+18440552 | MS.gene058632:CDS |
| AATAAGCGACCATTGACCGA+AGG | 0.639297 | 4.2:+18440413 | MS.gene058632:CDS |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4.2:+18441122 | MS.gene058632:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4.2:+18440288 | MS.gene058632:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4.2:-18440272 | None:intergenic |
| GCAGCAATCTCATTTGCACG+AGG | 0.681247 | 4.2:-18440659 | None:intergenic |
| TAGTTGATAGCCGAACTGAG+GGG | 0.803639 | 4.2:+18441089 | MS.gene058632:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATTATTCAACAGAA+TGG | - | chr4.2:18440240-18440259 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAATGAACTTTCT+GGG | + | chr4.2:18440132-18440151 | MS.gene058632:CDS | 25.0% |
| AACTTCCATTACATGTTCTT+CGG | - | chr4.2:18440975-18440994 | None:intergenic | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | + | chr4.2:18440668-18440687 | MS.gene058632:CDS | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | + | chr4.2:18440669-18440688 | MS.gene058632:CDS | 30.0% | |
| ATGATTGATGAGAAAGAATC+AGG | + | chr4.2:18440482-18440501 | MS.gene058632:CDS | 30.0% | |
| !! | GATCGTTTTAATGAACTTTC+TGG | + | chr4.2:18440131-18440150 | MS.gene058632:CDS | 30.0% |
| !! | TCGTTTTAATGAACTTTCTG+GGG | + | chr4.2:18440133-18440152 | MS.gene058632:CDS | 30.0% |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | + | chr4.2:18440720-18440739 | MS.gene058632:CDS | 30.0% |
| ACGAAAACGATGAAGAAGAA+GGG | - | chr4.2:18439998-18440017 | None:intergenic | 35.0% | |
| ATCTGAATTCATTGAGAGGT+CGG | + | chr4.2:18440292-18440311 | MS.gene058632:CDS | 35.0% | |
| ATGAATTGCTCTCGATTGAT+TGG | + | chr4.2:18440165-18440184 | MS.gene058632:CDS | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | - | chr4.2:18440968-18440987 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | + | chr4.2:18440967-18440986 | MS.gene058632:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | + | chr4.2:18440386-18440405 | MS.gene058632:CDS | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | - | chr4.2:18440803-18440822 | None:intergenic | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | - | chr4.2:18440802-18440821 | None:intergenic | 35.0% | |
| TCATTTGGTAGATCGTTGTT+TGG | + | chr4.2:18440017-18440036 | MS.gene058632:CDS | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | + | chr4.2:18440288-18440307 | MS.gene058632:CDS | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | - | chr4.2:18441122-18441141 | None:intergenic | 35.0% | |
| TTCGGCTATCAACTATCTTT+CGG | - | chr4.2:18441084-18441103 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | + | chr4.2:18441122-18441141 | MS.gene058632:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | + | chr4.2:18440979-18440998 | MS.gene058632:CDS | 35.0% |
| ! | TCTTCATCGTTTTCGTCATT+TGG | + | chr4.2:18440002-18440021 | MS.gene058632:CDS | 35.0% |
| ACAAGGAATAGCTGCAACAA+GGG | - | chr4.2:18440747-18440766 | None:intergenic | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | + | chr4.2:18440631-18440650 | MS.gene058632:CDS | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | + | chr4.2:18440795-18440814 | MS.gene058632:CDS | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | - | chr4.2:18440797-18440816 | None:intergenic | 40.0% | |
| CGAGAGCAATTCATAATCAC+TGG | - | chr4.2:18440159-18440178 | None:intergenic | 40.0% | |
| CTGTATAGTTTGATGTGCCA+AGG | - | chr4.2:18441123-18441142 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | + | chr4.2:18441121-18441140 | MS.gene058632:CDS | 40.0% | |
| GACGAAAACGATGAAGAAGA+AGG | - | chr4.2:18439999-18440018 | None:intergenic | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | + | chr4.2:18440320-18440339 | MS.gene058632:CDS | 40.0% | |
| GGAAGTTGAACAGGATTTGA+AGG | + | chr4.2:18440988-18441007 | MS.gene058632:CDS | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | + | chr4.2:18440319-18440338 | MS.gene058632:CDS | 40.0% | |
| GGCATTCAAGATCACATTCA+TGG | + | chr4.2:18440573-18440592 | MS.gene058632:CDS | 40.0% | |
| GTAGATCGTTGTTTGGTATG+AGG | + | chr4.2:18440024-18440043 | MS.gene058632:CDS | 40.0% | |
| TCAGATGTCATACGATCCAT+GGG | - | chr4.2:18440278-18440297 | None:intergenic | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | - | chr4.2:18440639-18440658 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | - | chr4.2:18440279-18440298 | None:intergenic | 40.0% | |
| ! | AGTCAAAGAAGAAAGAGCAC+CGG | + | chr4.2:18440858-18440877 | MS.gene058632:CDS | 40.0% |
| ! | CTCAGCGTCATAGATCTTTT+GGG | + | chr4.2:18440516-18440535 | MS.gene058632:CDS | 40.0% |
| ! | GATTCGTGTAATCTAGAGCT+TGG | + | chr4.2:18440086-18440105 | MS.gene058632:CDS | 40.0% |
| ! | TCTCAGCGTCATAGATCTTT+TGG | + | chr4.2:18440515-18440534 | MS.gene058632:CDS | 40.0% |
| !! | AGCTCTAGATTACACGAATC+CGG | - | chr4.2:18440086-18440105 | None:intergenic | 40.0% |
| !! | ATAGTTGATAGCCGAACTGA+GGG | + | chr4.2:18441088-18441107 | MS.gene058632:CDS | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | + | chr4.2:18441023-18441042 | MS.gene058632:CDS | 40.0% |
| !! | GAATGGCTCTGAATTCATCA+TGG | - | chr4.2:18440223-18440242 | None:intergenic | 40.0% |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | + | chr4.2:18441022-18441041 | MS.gene058632:CDS | 40.0% |
| AATAAGCGACCATTGACCGA+AGG | + | chr4.2:18440413-18440432 | MS.gene058632:CDS | 45.0% | |
| AGCTATTCCTTGTCAGGACA+GGG | + | chr4.2:18440754-18440773 | MS.gene058632:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | + | chr4.2:18440414-18440433 | MS.gene058632:CDS | 45.0% | |
| ATCGTTGTTTGGTATGAGGC+AGG | + | chr4.2:18440028-18440047 | MS.gene058632:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | + | chr4.2:18440298-18440317 | MS.gene058632:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | + | chr4.2:18440329-18440348 | MS.gene058632:CDS | 45.0% | |
| GAAACTGAGCAGAATCTACC+AGG | - | chr4.2:18440946-18440965 | None:intergenic | 45.0% | |
| GACAAGGAATAGCTGCAACA+AGG | - | chr4.2:18440748-18440767 | None:intergenic | 45.0% | |
| GCAAGGATAGTCATTCGACT+AGG | + | chr4.2:18440552-18440571 | MS.gene058632:CDS | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | + | chr4.2:18440351-18440370 | MS.gene058632:CDS | 45.0% | |
| GTTTGTGAGAATGCCTTCCA+CGG | + | chr4.2:18439962-18439981 | MS.gene058632:CDS | 45.0% | |
| TCAGTTATCGAAACCTCCCA+TGG | + | chr4.2:18440259-18440278 | MS.gene058632:CDS | 45.0% | |
| TGTGGAAGCAAGTCATGAAC+CGG | + | chr4.2:18440064-18440083 | MS.gene058632:CDS | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | + | chr4.2:18440748-18440767 | MS.gene058632:CDS | 45.0% | |
| TTGCTTCCACAGAATGAACC+TGG | - | chr4.2:18440055-18440074 | None:intergenic | 45.0% | |
| TTTAAACCCCTGTCCTGACA+AGG | - | chr4.2:18440764-18440783 | None:intergenic | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | + | chr4.2:18440330-18440349 | MS.gene058632:CDS | 45.0% | |
| ! | AACGATCTGCAACACGCTTT+TGG | - | chr4.2:18440118-18440137 | None:intergenic | 45.0% |
| ! | AGCGTCATAGATCTTTTGGG+AGG | + | chr4.2:18440519-18440538 | MS.gene058632:CDS | 45.0% |
| ! | CACATTCATGGAGTGTCTCT+AGG | + | chr4.2:18440585-18440604 | MS.gene058632:CDS | 45.0% |
| ! | CTTTCTTCTTTGACTCGTCC+AGG | - | chr4.2:18440853-18440872 | None:intergenic | 45.0% |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | + | chr4.2:18441027-18441046 | MS.gene058632:CDS | 45.0% |
| !! | GATAGTTGATAGCCGAACTG+AGG | + | chr4.2:18441087-18441106 | MS.gene058632:CDS | 45.0% |
| !! | TAGTTGATAGCCGAACTGAG+GGG | + | chr4.2:18441089-18441108 | MS.gene058632:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | - | chr4.2:18440624-18440643 | None:intergenic | 45.0% |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | - | chr4.2:18440367-18440386 | None:intergenic | 45.0% |
| AATCTACCAGGTCCGTCAAG+TGG | - | chr4.2:18440934-18440953 | None:intergenic | 50.0% | |
| CAGCTATTCCTTGTCAGGAC+AGG | + | chr4.2:18440753-18440772 | MS.gene058632:CDS | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | + | chr4.2:18440825-18440844 | MS.gene058632:CDS | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | + | chr4.2:18440423-18440442 | MS.gene058632:CDS | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | + | chr4.2:18440364-18440383 | MS.gene058632:CDS | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | - | chr4.2:18440425-18440444 | None:intergenic | 50.0% | |
| GATGTCATACGATCCATGGG+AGG | - | chr4.2:18440275-18440294 | None:intergenic | 50.0% | |
| GCAATCTCATTTGCACGAGG+TGG | - | chr4.2:18440659-18440678 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | - | chr4.2:18440662-18440681 | None:intergenic | 50.0% | |
| GCTATTCCTTGTCAGGACAG+GGG | + | chr4.2:18440755-18440774 | MS.gene058632:CDS | 50.0% | |
| TGTTGTGAGGATCTTGAGGG+GGG | + | chr4.2:18439921-18439940 | MS.gene058632:CDS | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | - | chr4.2:18440847-18440866 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | + | chr4.2:18440869-18440888 | MS.gene058632:CDS | 50.0% |
| !! | AGAAGGGCTCTGATTTTCCG+TGG | - | chr4.2:18439982-18440001 | None:intergenic | 50.0% |
| !! | GGCACTGATGGATTTAGCAC+TGG | + | chr4.2:18440457-18440476 | MS.gene058632:CDS | 50.0% |
| !! | TAGAGACGGGTTGGATCCAT+TGG | + | chr4.2:18441036-18441055 | MS.gene058632:CDS | 50.0% |
| ACTGAGGGGCTTGATTCCCT+TGG | + | chr4.2:18441103-18441122 | MS.gene058632:CDS | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | - | chr4.2:18440834-18440853 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | - | chr4.2:18440652-18440671 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | + | chr4.2:18440832-18440851 | MS.gene058632:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | + | chr4.2:18440427-18440446 | MS.gene058632:CDS | 55.0% | |
| GCAGGACCAGGTTCATTCTG+TGG | + | chr4.2:18440046-18440065 | MS.gene058632:CDS | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | + | chr4.2:18440436-18440455 | MS.gene058632:CDS | 55.0% | |
| GGGAATCAAGCCCCTCAGTT+CGG | - | chr4.2:18441102-18441121 | None:intergenic | 55.0% | |
| GTTTGGTATGAGGCAGGACC+AGG | + | chr4.2:18440034-18440053 | MS.gene058632:CDS | 55.0% | |
| TAGTTGCTTGGCTGCAGACC+AGG | - | chr4.2:18440612-18440631 | None:intergenic | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | - | chr4.2:18440880-18440899 | None:intergenic | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | + | chr4.2:18440426-18440445 | MS.gene058632:CDS | 55.0% | |
| TGAGGATCTTGAGGGGGGTT+TGG | + | chr4.2:18439926-18439945 | MS.gene058632:CDS | 55.0% | |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | + | chr4.2:18440591-18440610 | MS.gene058632:CDS | 55.0% |
| ! | TGGGAGGCATAACTCGAGCA+AGG | + | chr4.2:18440535-18440554 | MS.gene058632:CDS | 55.0% |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | + | chr4.2:18440880-18440899 | MS.gene058632:CDS | 55.0% |
| !! | GGGCTCTGATTTTCCGTGGA+AGG | - | chr4.2:18439978-18439997 | None:intergenic | 55.0% |
| CGCCCTCCTAAACTGCCCTT+CGG | - | chr4.2:18440432-18440451 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | - | chr4.2:18440931-18440950 | None:intergenic | 60.0% | |
| CTTGAGGGGGGTTTGGCTGA+GGG | + | chr4.2:18439933-18439952 | MS.gene058632:CDS | 60.0% | |
| GGGGTTTGGCTGAGGGTTGT+GGG | + | chr4.2:18439940-18439959 | MS.gene058632:CDS | 60.0% | |
| TACCAGGTCCGTCAAGTGGC+GGG | - | chr4.2:18440930-18440949 | None:intergenic | 60.0% | |
| TCTTGAGGGGGGTTTGGCTG+AGG | + | chr4.2:18439932-18439951 | MS.gene058632:CDS | 60.0% | |
| TTCGGAACACCTCCCTCACG+TGG | - | chr4.2:18441066-18441085 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | + | chr4.2:18441050-18441069 | MS.gene058632:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | + | chr4.2:18441051-18441070 | MS.gene058632:CDS | 60.0% |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | + | chr4.2:18440445-18440464 | MS.gene058632:CDS | 60.0% |
| GACAGCCACCCGCCACTTGA+CGG | + | chr4.2:18440919-18440938 | MS.gene058632:CDS | 65.0% | |
| GGGGGTTTGGCTGAGGGTTG+TGG | + | chr4.2:18439939-18439958 | MS.gene058632:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | - | chr4.2:18441055-18441074 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | + | chr4.2:18441054-18441073 | MS.gene058632:CDS | 65.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | + | chr4.2:18440925-18440944 | MS.gene058632:CDS | 70.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | - | chr4.2:18440927-18440946 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 18439921 | 18441150 | 18439921 | ID=MS.gene058632 |
| chr4.2 | mRNA | 18439921 | 18441150 | 18439921 | ID=MS.gene058632.t1;Parent=MS.gene058632 |
| chr4.2 | exon | 18439921 | 18441150 | 18439921 | ID=MS.gene058632.t1.exon1;Parent=MS.gene058632.t1 |
| chr4.2 | CDS | 18439921 | 18441150 | 18439921 | ID=cds.MS.gene058632.t1;Parent=MS.gene058632.t1 |
| Gene Sequence |
| Protein sequence |
