Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058634.t1 | XP_013457254.1 | 96.4 | 394 | 12 | 1 | 1 | 392 | 1 | 394 | 3.60E-191 | 677.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058634.t1 | A0A072UZK1 | 96.4 | 394 | 12 | 1 | 1 | 392 | 1 | 394 | 2.6e-191 | 677.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050306 | MS.gene058634 | 0.814761 | 1.31E-51 | -1.69E-46 |
| MS.gene050384 | MS.gene058634 | 0.81769 | 2.89E-52 | -1.69E-46 |
| MS.gene050386 | MS.gene058634 | 0.803219 | 3.87E-49 | -1.69E-46 |
| MS.gene053541 | MS.gene058634 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene058634 | 0.811047 | 8.51E-51 | -1.69E-46 |
| MS.gene057392 | MS.gene058634 | 0.821037 | 4.99E-53 | -1.69E-46 |
| MS.gene057694 | MS.gene058634 | 0.803015 | 4.27E-49 | -1.69E-46 |
| MS.gene058632 | MS.gene058634 | 0.886934 | 2.22E-72 | -1.69E-46 |
| MS.gene058634 | MS.gene05978 | 0.821104 | 4.82E-53 | -1.69E-46 |
| MS.gene058634 | MS.gene08319 | 0.818495 | 1.90E-52 | -1.69E-46 |
| MS.gene058634 | MS.gene21426 | 0.810064 | 1.39E-50 | -1.69E-46 |
| MS.gene058634 | MS.gene24356 | 0.802882 | 4.54E-49 | -1.69E-46 |
| MS.gene058634 | MS.gene24686 | 0.816632 | 5.00E-52 | -1.69E-46 |
| MS.gene058634 | MS.gene25696 | 0.832026 | 1.20E-55 | -1.69E-46 |
| MS.gene058634 | MS.gene28753 | 0.902901 | 6.03E-79 | -1.69E-46 |
| MS.gene058634 | MS.gene28755 | 0.861675 | 8.68E-64 | -1.69E-46 |
| MS.gene058634 | MS.gene31802 | 0.813449 | 2.55E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene34232 | 0.818139 | 2.29E-52 | -1.69E-46 |
| MS.gene058634 | MS.gene35070 | 0.990268 | 7.77E-182 | -1.69E-46 |
| MS.gene058634 | MS.gene35072 | 0.988555 | 1.76E-174 | -1.69E-46 |
| MS.gene058634 | MS.gene35528 | 0.813136 | 2.98E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene35529 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene35703 | 0.817777 | 2.77E-52 | -1.69E-46 |
| MS.gene058634 | MS.gene38569 | 0.862914 | 3.61E-64 | -1.69E-46 |
| MS.gene058634 | MS.gene39882 | 0.804474 | 2.12E-49 | -1.69E-46 |
| MS.gene058634 | MS.gene46376 | 0.805007 | 1.64E-49 | -1.69E-46 |
| MS.gene058634 | MS.gene49320 | 0.814445 | 1.53E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene50775 | 0.82143 | 4.05E-53 | -1.69E-46 |
| MS.gene058634 | MS.gene53935 | 0.811588 | 6.50E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene60690 | 0.812246 | 4.67E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene61239 | 0.850238 | 1.93E-60 | -1.69E-46 |
| MS.gene058634 | MS.gene63673 | 0.811151 | 8.08E-51 | -1.69E-46 |
| MS.gene058634 | MS.gene64677 | 0.829384 | 5.31E-55 | -1.69E-46 |
| MS.gene058634 | MS.gene71236 | 0.859217 | 4.82E-63 | -1.69E-46 |
| MS.gene058634 | MS.gene71308 | 0.829026 | 6.48E-55 | -1.69E-46 |
| MS.gene058634 | MS.gene78208 | 0.801666 | 8.09E-49 | -1.69E-46 |
| MS.gene058634 | MS.gene95096 | 0.806248 | 9.02E-50 | -1.69E-46 |
| MS.gene058634 | MS.gene95728 | 0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene058634 | MS.gene97784 | 0.80494 | 1.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058634.t1 | MTR_4g094375 | 96.447 | 394 | 12 | 1 | 1 | 392 | 1 | 394 | 0.0 | 779 |
| MS.gene058634.t1 | MTR_1g098700 | 53.676 | 408 | 164 | 4 | 1 | 388 | 1 | 403 | 4.26e-156 | 446 |
| MS.gene058634.t1 | MTR_6g037000 | 53.887 | 373 | 161 | 5 | 18 | 384 | 9 | 376 | 1.32e-139 | 403 |
| MS.gene058634.t1 | MTR_6g036920 | 53.476 | 374 | 163 | 5 | 18 | 385 | 9 | 377 | 8.22e-135 | 390 |
| MS.gene058634.t1 | MTR_6g037010 | 48.387 | 341 | 145 | 3 | 44 | 384 | 9 | 318 | 2.96e-109 | 324 |
| MS.gene058634.t1 | MTR_8g098895 | 42.239 | 393 | 203 | 11 | 2 | 384 | 3 | 381 | 3.42e-83 | 259 |
| MS.gene058634.t1 | MTR_6g037060 | 53.659 | 205 | 84 | 5 | 18 | 216 | 9 | 208 | 5.47e-65 | 206 |
| MS.gene058634.t1 | MTR_6g036980 | 53.642 | 151 | 65 | 2 | 44 | 190 | 9 | 158 | 8.73e-49 | 162 |
| MS.gene058634.t1 | MTR_6g037070 | 53.030 | 132 | 61 | 1 | 256 | 386 | 1 | 132 | 4.70e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058634.t1 | AT1G74450 | 54.020 | 398 | 163 | 5 | 1 | 385 | 1 | 391 | 9.79e-145 | 417 |
| MS.gene058634.t1 | AT1G18740 | 53.807 | 394 | 160 | 7 | 1 | 384 | 1 | 382 | 2.50e-144 | 415 |
| MS.gene058634.t1 | AT1G43630 | 52.308 | 390 | 168 | 8 | 1 | 385 | 31 | 407 | 1.24e-135 | 394 |
| MS.gene058634.t1 | AT1G63930 | 36.516 | 419 | 213 | 13 | 2 | 384 | 3 | 404 | 1.34e-84 | 264 |
| MS.gene058634.t1 | AT4G11300 | 37.245 | 392 | 212 | 9 | 2 | 384 | 3 | 369 | 3.16e-71 | 228 |
| MS.gene058634.t1 | AT4G23530 | 34.293 | 382 | 220 | 9 | 20 | 379 | 13 | 385 | 3.65e-53 | 181 |
Find 105 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGCGTCATAGATCTTT+TGG | 0.183195 | 4.2:-18426265 | MS.gene058634:CDS |
| AACGATCTGCAACACGCTTT+TGG | 0.237316 | 4.2:+18426665 | None:intergenic |
| CATTGACCGAAGGGCAGTTT+AGG | 0.321777 | 4.2:-18426357 | MS.gene058634:CDS |
| AATGAGATTGCTGCAAATAA+AGG | 0.333425 | 4.2:-18426112 | MS.gene058634:CDS |
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4.2:-18426394 | MS.gene058634:CDS |
| TTCGGCTATCAACTATCTTT+CGG | 0.358993 | 4.2:+18425699 | None:intergenic |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4.2:+18425903 | None:intergenic |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4.2:+18425981 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4.2:+18425815 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4.2:-18426032 | MS.gene058634:CDS |
| CAGCTATTCCTTGTCAGGAC+AGG | 0.387126 | 4.2:-18426027 | MS.gene058634:CDS |
| CTTTCTTCTTTGACTCGTCC+AGG | 0.391519 | 4.2:+18425930 | None:intergenic |
| ATGATTGATGAGAAAGAATC+AGG | 0.391748 | 4.2:-18426298 | MS.gene058634:CDS |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4.2:+18425986 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4.2:-18426416 | MS.gene058634:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4.2:+18425980 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4.2:-18425801 | MS.gene058634:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4.2:+18425936 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4.2:+18425808 | None:intergenic |
| ATGAATTGCTCTCGATTGAT+TGG | 0.412007 | 4.2:-18426615 | MS.gene058634:CDS |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4.2:+18425728 | None:intergenic |
| TCATTTGGTAGATCGTTGTT+TGG | 0.434869 | 4.2:-18426763 | MS.gene058634:CDS |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4.2:-18425744 | MS.gene058634:CDS |
| GGCATTCAAGATCACATTCA+TGG | 0.437225 | 4.2:-18426207 | MS.gene058634:CDS |
| TGCAATGGACTGTAGTTGCT+TGG | 0.438495 | 4.2:+18426159 | None:intergenic |
| CTAAACTGCCCTTCGGTCAA+TGG | 0.439271 | 4.2:+18426358 | None:intergenic |
| AGCTATTCCTTGTCAGGACA+GGG | 0.440449 | 4.2:-18426026 | MS.gene058634:CDS |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4.2:-18425659 | MS.gene058634:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4.2:-18425861 | MS.gene058634:CDS |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4.2:-18425985 | MS.gene058634:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4.2:-18425792 | MS.gene058634:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4.2:+18426543 | None:intergenic |
| CATTTGCACGAGGTGGAACC+AGG | 0.462052 | 4.2:+18426131 | None:intergenic |
| GCAGTTTAGGAGGGCGAGAA+AGG | 0.470954 | 4.2:-18426344 | MS.gene058634:CDS |
| GTTTGGTATGAGGCAGGACC+AGG | 0.472376 | 4.2:-18426746 | MS.gene058634:CDS |
| ATGAGATTGCTGCAAATAAA+GGG | 0.480948 | 4.2:-18426111 | MS.gene058634:CDS |
| CGCCCTCCTAAACTGCCCTT+CGG | 0.482592 | 4.2:+18426351 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4.2:+18425681 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4.2:+18426504 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4.2:-18425948 | MS.gene058634:CDS |
| ATCGTTGTTTGGTATGAGGC+AGG | 0.489438 | 4.2:-18426752 | MS.gene058634:CDS |
| CATGGAGTGTCTCTAGGTCC+TGG | 0.490607 | 4.2:-18426189 | MS.gene058634:CDS |
| TGTGGAAGCAAGTCATGAAC+CGG | 0.491995 | 4.2:-18426716 | MS.gene058634:CDS |
| TAGTTGCTTGGCTGCAGACC+AGG | 0.494155 | 4.2:+18426171 | None:intergenic |
| GTAGATCGTTGTTTGGTATG+AGG | 0.498240 | 4.2:-18426756 | MS.gene058634:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4.2:-18425677 | MS.gene058634:CDS |
| TGACCGAAGGGCAGTTTAGG+AGG | 0.504334 | 4.2:-18426354 | MS.gene058634:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4.2:-18426451 | MS.gene058634:CDS |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4.2:-18425813 | MS.gene058634:CDS |
| GACGAAAACGATGAAGAAGA+AGG | 0.517630 | 4.2:+18426784 | None:intergenic |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4.2:-18426450 | MS.gene058634:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4.2:+18425853 | None:intergenic |
| GATTCGTGTAATCTAGAGCT+TGG | 0.523932 | 4.2:-18426694 | MS.gene058634:CDS |
| CGAGAGCAATTCATAATCAC+TGG | 0.525583 | 4.2:+18426624 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4.2:-18425855 | MS.gene058634:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4.2:-18426460 | MS.gene058634:CDS |
| TGGAACCAGGTTATTTGCAA+TGG | 0.532348 | 4.2:+18426144 | None:intergenic |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4.2:-18425729 | MS.gene058634:CDS |
| AGCTCTAGATTACACGAATC+CGG | 0.535203 | 4.2:+18426697 | None:intergenic |
| GAGGGCGAGAAAGGCACTGA+TGG | 0.537995 | 4.2:-18426335 | MS.gene058634:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4.2:-18425900 | MS.gene058634:CDS |
| CACATTCATGGAGTGTCTCT+AGG | 0.544575 | 4.2:-18426195 | MS.gene058634:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4.2:-18426488 | MS.gene058634:CDS |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4.2:-18425955 | MS.gene058634:CDS |
| GGCACTGATGGATTTAGCAC+TGG | 0.556578 | 4.2:-18426323 | MS.gene058634:CDS |
| ACAAGGAATAGCTGCAACAA+GGG | 0.556963 | 4.2:+18426036 | None:intergenic |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4.2:+18425837 | None:intergenic |
| ATAGTTGATAGCCGAACTGA+GGG | 0.570229 | 4.2:-18425692 | MS.gene058634:CDS |
| GACCGAAGGGCAGTTTAGGA+GGG | 0.570937 | 4.2:-18426353 | MS.gene058634:CDS |
| GACAAGGAATAGCTGCAACA+AGG | 0.579699 | 4.2:+18426035 | None:intergenic |
| ACGAAAACGATGAAGAAGAA+GGG | 0.593698 | 4.2:+18426785 | None:intergenic |
| TTGCTTCCACAGAATGAACC+TGG | 0.596071 | 4.2:+18426728 | None:intergenic |
| GTTTGTGAGAATGCCTTCCA+CGG | 0.596488 | 4.2:-18426818 | None:intergenic |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4.2:-18425726 | MS.gene058634:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4.2:-18425730 | MS.gene058634:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4.2:+18426505 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4.2:+18425856 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4.2:-18426461 | MS.gene058634:CDS |
| GCTATTCCTTGTCAGGACAG+GGG | 0.604712 | 4.2:-18426025 | MS.gene058634:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4.2:+18425852 | None:intergenic |
| TTTAAACCCCTGTCCTGACA+AGG | 0.605039 | 4.2:+18426019 | None:intergenic |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4.2:+18425660 | None:intergenic |
| AGTCAAAGAAGAAAGAGCAC+CGG | 0.610994 | 4.2:-18425922 | MS.gene058634:CDS |
| GCAGGACCAGGTTCATTCTG+TGG | 0.612935 | 4.2:-18426734 | MS.gene058634:CDS |
| ATAAGCGACCATTGACCGAA+GGG | 0.613621 | 4.2:-18426366 | MS.gene058634:CDS |
| TGGGAGGCATAACTCGAGCA+AGG | 0.614020 | 4.2:-18426245 | MS.gene058634:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4.2:-18426482 | MS.gene058634:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4.2:+18426560 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4.2:+18425717 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4.2:-18426429 | MS.gene058634:CDS |
| GCAATCTCATTTGCACGAGG+TGG | 0.622309 | 4.2:+18426124 | None:intergenic |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4.2:+18425661 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4.2:-18426521 | MS.gene058634:CDS |
| AAAGAGCACCGGAACTCAAG+CGG | 0.627839 | 4.2:-18425911 | MS.gene058634:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4.2:+18425949 | None:intergenic |
| GATAGTTGATAGCCGAACTG+AGG | 0.632654 | 4.2:-18425693 | MS.gene058634:CDS |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4.2:+18425849 | None:intergenic |
| ACAGTCCATTGCAAATAACC+TGG | 0.633958 | 4.2:-18426149 | MS.gene058634:CDS |
| GCAAGGATAGTCATTCGACT+AGG | 0.636083 | 4.2:-18426228 | MS.gene058634:CDS |
| AATAAGCGACCATTGACCGA+AGG | 0.639297 | 4.2:-18426367 | MS.gene058634:CDS |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4.2:-18425658 | MS.gene058634:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4.2:-18426492 | MS.gene058634:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4.2:+18426508 | None:intergenic |
| GCAGCAATCTCATTTGCACG+AGG | 0.681247 | 4.2:+18426121 | None:intergenic |
| TAGTTGATAGCCGAACTGAG+GGG | 0.803639 | 4.2:-18425691 | MS.gene058634:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATTATTCAACAGAA+TGG | + | chr4.2:18425920-18425939 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAATGAACTTTCT+GGG | - | chr4.2:18425812-18425831 | MS.gene058634:CDS | 25.0% |
| AACTTCCATTACATGTTCTT+CGG | + | chr4.2:18426655-18426674 | None:intergenic | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | - | chr4.2:18426348-18426367 | MS.gene058634:CDS | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | - | chr4.2:18426349-18426368 | MS.gene058634:CDS | 30.0% | |
| ATGATTGATGAGAAAGAATC+AGG | - | chr4.2:18426162-18426181 | MS.gene058634:CDS | 30.0% | |
| !! | GATCGTTTTAATGAACTTTC+TGG | - | chr4.2:18425811-18425830 | MS.gene058634:CDS | 30.0% |
| !! | TCGTTTTAATGAACTTTCTG+GGG | - | chr4.2:18425813-18425832 | MS.gene058634:CDS | 30.0% |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | - | chr4.2:18426400-18426419 | MS.gene058634:CDS | 30.0% |
| ACGAAAACGATGAAGAAGAA+GGG | + | chr4.2:18425678-18425697 | None:intergenic | 35.0% | |
| ATCTGAATTCATTGAGAGGT+CGG | - | chr4.2:18425972-18425991 | MS.gene058634:CDS | 35.0% | |
| ATGAATTGCTCTCGATTGAT+TGG | - | chr4.2:18425845-18425864 | MS.gene058634:CDS | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | + | chr4.2:18426648-18426667 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | - | chr4.2:18426647-18426666 | MS.gene058634:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | - | chr4.2:18426066-18426085 | MS.gene058634:CDS | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | + | chr4.2:18426483-18426502 | None:intergenic | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | + | chr4.2:18426482-18426501 | None:intergenic | 35.0% | |
| TCATTTGGTAGATCGTTGTT+TGG | - | chr4.2:18425697-18425716 | MS.gene058634:CDS | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | - | chr4.2:18425968-18425987 | MS.gene058634:CDS | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | + | chr4.2:18426802-18426821 | None:intergenic | 35.0% | |
| TTCGGCTATCAACTATCTTT+CGG | + | chr4.2:18426764-18426783 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | - | chr4.2:18426802-18426821 | MS.gene058634:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | - | chr4.2:18426659-18426678 | MS.gene058634:CDS | 35.0% |
| ! | TCTTCATCGTTTTCGTCATT+TGG | - | chr4.2:18425682-18425701 | MS.gene058634:CDS | 35.0% |
| ACAAGGAATAGCTGCAACAA+GGG | + | chr4.2:18426427-18426446 | None:intergenic | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | - | chr4.2:18426311-18426330 | MS.gene058634:CDS | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | - | chr4.2:18426475-18426494 | MS.gene058634:CDS | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | + | chr4.2:18426477-18426496 | None:intergenic | 40.0% | |
| CGAGAGCAATTCATAATCAC+TGG | + | chr4.2:18425839-18425858 | None:intergenic | 40.0% | |
| CTGTATAGTTTGATGTGCCA+AGG | + | chr4.2:18426803-18426822 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | - | chr4.2:18426801-18426820 | MS.gene058634:CDS | 40.0% | |
| GACGAAAACGATGAAGAAGA+AGG | + | chr4.2:18425679-18425698 | None:intergenic | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | - | chr4.2:18426000-18426019 | MS.gene058634:CDS | 40.0% | |
| GGAAGTTGAACAGGATTTGA+AGG | - | chr4.2:18426668-18426687 | MS.gene058634:CDS | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | - | chr4.2:18425999-18426018 | MS.gene058634:CDS | 40.0% | |
| GGCATTCAAGATCACATTCA+TGG | - | chr4.2:18426253-18426272 | MS.gene058634:CDS | 40.0% | |
| GTAGATCGTTGTTTGGTATG+AGG | - | chr4.2:18425704-18425723 | MS.gene058634:CDS | 40.0% | |
| TCAGATGTCATACGATCCAT+GGG | + | chr4.2:18425958-18425977 | None:intergenic | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | + | chr4.2:18426319-18426338 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | + | chr4.2:18425959-18425978 | None:intergenic | 40.0% | |
| ! | AGTCAAAGAAGAAAGAGCAC+CGG | - | chr4.2:18426538-18426557 | MS.gene058634:CDS | 40.0% |
| ! | CTCAGCGTCATAGATCTTTT+GGG | - | chr4.2:18426196-18426215 | MS.gene058634:CDS | 40.0% |
| ! | GATTCGTGTAATCTAGAGCT+TGG | - | chr4.2:18425766-18425785 | MS.gene058634:CDS | 40.0% |
| ! | TCTCAGCGTCATAGATCTTT+TGG | - | chr4.2:18426195-18426214 | MS.gene058634:CDS | 40.0% |
| !! | AGCTCTAGATTACACGAATC+CGG | + | chr4.2:18425766-18425785 | None:intergenic | 40.0% |
| !! | ATAGTTGATAGCCGAACTGA+GGG | - | chr4.2:18426768-18426787 | MS.gene058634:CDS | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | - | chr4.2:18426703-18426722 | MS.gene058634:CDS | 40.0% |
| !! | GAATGGCTCTGAATTCATCA+TGG | + | chr4.2:18425903-18425922 | None:intergenic | 40.0% |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | - | chr4.2:18426702-18426721 | MS.gene058634:CDS | 40.0% |
| AATAAGCGACCATTGACCGA+AGG | - | chr4.2:18426093-18426112 | MS.gene058634:CDS | 45.0% | |
| AGCTATTCCTTGTCAGGACA+GGG | - | chr4.2:18426434-18426453 | MS.gene058634:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | - | chr4.2:18426094-18426113 | MS.gene058634:CDS | 45.0% | |
| ATCGTTGTTTGGTATGAGGC+AGG | - | chr4.2:18425708-18425727 | MS.gene058634:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | - | chr4.2:18425978-18425997 | MS.gene058634:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | - | chr4.2:18426009-18426028 | MS.gene058634:CDS | 45.0% | |
| GAAACTGAGCAGAATCTACC+AGG | + | chr4.2:18426626-18426645 | None:intergenic | 45.0% | |
| GACAAGGAATAGCTGCAACA+AGG | + | chr4.2:18426428-18426447 | None:intergenic | 45.0% | |
| GCAAGGATAGTCATTCGACT+AGG | - | chr4.2:18426232-18426251 | MS.gene058634:CDS | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | - | chr4.2:18426031-18426050 | MS.gene058634:CDS | 45.0% | |
| TCAGTTATCGAAACCTCCCA+TGG | - | chr4.2:18425939-18425958 | MS.gene058634:CDS | 45.0% | |
| TGTGGAAGCAAGTCATGAAC+CGG | - | chr4.2:18425744-18425763 | MS.gene058634:CDS | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | - | chr4.2:18426428-18426447 | MS.gene058634:CDS | 45.0% | |
| TTGCTTCCACAGAATGAACC+TGG | + | chr4.2:18425735-18425754 | None:intergenic | 45.0% | |
| TTTAAACCCCTGTCCTGACA+AGG | + | chr4.2:18426444-18426463 | None:intergenic | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | - | chr4.2:18426010-18426029 | MS.gene058634:CDS | 45.0% | |
| ! | AACGATCTGCAACACGCTTT+TGG | + | chr4.2:18425798-18425817 | None:intergenic | 45.0% |
| ! | AGCGTCATAGATCTTTTGGG+AGG | - | chr4.2:18426199-18426218 | MS.gene058634:CDS | 45.0% |
| ! | CACATTCATGGAGTGTCTCT+AGG | - | chr4.2:18426265-18426284 | MS.gene058634:CDS | 45.0% |
| ! | CTTTCTTCTTTGACTCGTCC+AGG | + | chr4.2:18426533-18426552 | None:intergenic | 45.0% |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | - | chr4.2:18426707-18426726 | MS.gene058634:CDS | 45.0% |
| !! | GATAGTTGATAGCCGAACTG+AGG | - | chr4.2:18426767-18426786 | MS.gene058634:CDS | 45.0% |
| !! | TAGTTGATAGCCGAACTGAG+GGG | - | chr4.2:18426769-18426788 | MS.gene058634:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | + | chr4.2:18426304-18426323 | None:intergenic | 45.0% |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | + | chr4.2:18426047-18426066 | None:intergenic | 45.0% |
| AATCTACCAGGTCCGTCAAG+TGG | + | chr4.2:18426614-18426633 | None:intergenic | 50.0% | |
| CAGCTATTCCTTGTCAGGAC+AGG | - | chr4.2:18426433-18426452 | MS.gene058634:CDS | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | - | chr4.2:18426505-18426524 | MS.gene058634:CDS | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | - | chr4.2:18426103-18426122 | MS.gene058634:CDS | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | - | chr4.2:18426044-18426063 | MS.gene058634:CDS | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | + | chr4.2:18426105-18426124 | None:intergenic | 50.0% | |
| GATGTCATACGATCCATGGG+AGG | + | chr4.2:18425955-18425974 | None:intergenic | 50.0% | |
| GCAATCTCATTTGCACGAGG+TGG | + | chr4.2:18426339-18426358 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | + | chr4.2:18426342-18426361 | None:intergenic | 50.0% | |
| GCTATTCCTTGTCAGGACAG+GGG | - | chr4.2:18426435-18426454 | MS.gene058634:CDS | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | + | chr4.2:18426527-18426546 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | - | chr4.2:18426549-18426568 | MS.gene058634:CDS | 50.0% |
| !! | AGAAGGGCTCTGATTTTCCG+TGG | + | chr4.2:18425662-18425681 | None:intergenic | 50.0% |
| !! | GGCACTGATGGATTTAGCAC+TGG | - | chr4.2:18426137-18426156 | MS.gene058634:CDS | 50.0% |
| !! | TAGAGACGGGTTGGATCCAT+TGG | - | chr4.2:18426716-18426735 | MS.gene058634:CDS | 50.0% |
| ACTGAGGGGCTTGATTCCCT+TGG | - | chr4.2:18426783-18426802 | MS.gene058634:CDS | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | + | chr4.2:18426514-18426533 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | + | chr4.2:18426332-18426351 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | - | chr4.2:18426512-18426531 | MS.gene058634:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | - | chr4.2:18426107-18426126 | MS.gene058634:CDS | 55.0% | |
| GCAGGACCAGGTTCATTCTG+TGG | - | chr4.2:18425726-18425745 | MS.gene058634:CDS | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | - | chr4.2:18426116-18426135 | MS.gene058634:CDS | 55.0% | |
| GGGAATCAAGCCCCTCAGTT+CGG | + | chr4.2:18426782-18426801 | None:intergenic | 55.0% | |
| GTTTGGTATGAGGCAGGACC+AGG | - | chr4.2:18425714-18425733 | MS.gene058634:CDS | 55.0% | |
| TAGTTGCTTGGCTGCAGACC+AGG | + | chr4.2:18426292-18426311 | None:intergenic | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | + | chr4.2:18426560-18426579 | None:intergenic | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | - | chr4.2:18426106-18426125 | MS.gene058634:CDS | 55.0% | |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | - | chr4.2:18426271-18426290 | MS.gene058634:CDS | 55.0% |
| ! | TGGGAGGCATAACTCGAGCA+AGG | - | chr4.2:18426215-18426234 | MS.gene058634:CDS | 55.0% |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | - | chr4.2:18426560-18426579 | MS.gene058634:CDS | 55.0% |
| !! | GGGCTCTGATTTTCCGTGGA+AGG | + | chr4.2:18425658-18425677 | None:intergenic | 55.0% |
| CGCCCTCCTAAACTGCCCTT+CGG | + | chr4.2:18426112-18426131 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | + | chr4.2:18426611-18426630 | None:intergenic | 60.0% | |
| TACCAGGTCCGTCAAGTGGC+GGG | + | chr4.2:18426610-18426629 | None:intergenic | 60.0% | |
| TTCGGAACACCTCCCTCACG+TGG | + | chr4.2:18426746-18426765 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | - | chr4.2:18426730-18426749 | MS.gene058634:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | - | chr4.2:18426731-18426750 | MS.gene058634:CDS | 60.0% |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | - | chr4.2:18426125-18426144 | MS.gene058634:CDS | 60.0% |
| GACAGCCACCCGCCACTTGA+CGG | - | chr4.2:18426599-18426618 | MS.gene058634:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | + | chr4.2:18426735-18426754 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | - | chr4.2:18426734-18426753 | MS.gene058634:CDS | 65.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | - | chr4.2:18426605-18426624 | MS.gene058634:CDS | 70.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | + | chr4.2:18426607-18426626 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 18425652 | 18426830 | 18425652 | ID=MS.gene058634 |
| chr4.2 | mRNA | 18425652 | 18426830 | 18425652 | ID=MS.gene058634.t1;Parent=MS.gene058634 |
| chr4.2 | exon | 18425652 | 18426830 | 18425652 | ID=MS.gene058634.t1.exon1;Parent=MS.gene058634.t1 |
| chr4.2 | CDS | 18425652 | 18426830 | 18425652 | ID=cds.MS.gene058634.t1;Parent=MS.gene058634.t1 |
| Gene Sequence |
| Protein sequence |
