Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28755.t1 | XP_013457254.1 | 96.2 | 394 | 13 | 1 | 1 | 392 | 1 | 394 | 5.20E-190 | 673.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28755.t1 | A0A072UZK1 | 96.2 | 394 | 13 | 1 | 1 | 392 | 1 | 394 | 3.7e-190 | 673.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058632 | MS.gene28755 | 0.866062 | 3.75E-65 | -1.69E-46 |
| MS.gene058634 | MS.gene28755 | 0.861675 | 8.68E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28755.t1 | MTR_4g094375 | 96.193 | 394 | 13 | 1 | 1 | 392 | 1 | 394 | 0.0 | 775 |
| MS.gene28755.t1 | MTR_1g098700 | 53.676 | 408 | 164 | 4 | 1 | 388 | 1 | 403 | 6.32e-156 | 445 |
| MS.gene28755.t1 | MTR_6g037000 | 53.887 | 373 | 161 | 5 | 18 | 384 | 9 | 376 | 2.31e-139 | 402 |
| MS.gene28755.t1 | MTR_6g036920 | 53.476 | 374 | 163 | 5 | 18 | 385 | 9 | 377 | 2.31e-134 | 389 |
| MS.gene28755.t1 | MTR_6g037010 | 48.387 | 341 | 145 | 3 | 44 | 384 | 9 | 318 | 4.98e-109 | 323 |
| MS.gene28755.t1 | MTR_8g098895 | 42.239 | 393 | 203 | 11 | 2 | 384 | 3 | 381 | 6.11e-83 | 259 |
| MS.gene28755.t1 | MTR_6g037060 | 53.659 | 205 | 84 | 5 | 18 | 216 | 9 | 208 | 7.48e-65 | 206 |
| MS.gene28755.t1 | MTR_6g036980 | 53.642 | 151 | 65 | 2 | 44 | 190 | 9 | 158 | 1.47e-48 | 162 |
| MS.gene28755.t1 | MTR_6g037070 | 53.030 | 132 | 61 | 1 | 256 | 386 | 1 | 132 | 4.55e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28755.t1 | AT1G74450 | 54.020 | 398 | 163 | 5 | 1 | 385 | 1 | 391 | 5.37e-144 | 415 |
| MS.gene28755.t1 | AT1G18740 | 53.807 | 394 | 160 | 7 | 1 | 384 | 1 | 382 | 1.15e-143 | 413 |
| MS.gene28755.t1 | AT1G43630 | 52.308 | 390 | 168 | 8 | 1 | 385 | 31 | 407 | 6.78e-135 | 392 |
| MS.gene28755.t1 | AT1G63930 | 36.516 | 419 | 213 | 13 | 2 | 384 | 3 | 404 | 8.53e-85 | 264 |
| MS.gene28755.t1 | AT4G11300 | 37.245 | 392 | 212 | 9 | 2 | 384 | 3 | 369 | 7.94e-71 | 227 |
| MS.gene28755.t1 | AT4G23530 | 34.293 | 382 | 220 | 9 | 20 | 379 | 13 | 385 | 7.56e-53 | 181 |
Find 105 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGCGTCATAGATCTTT+TGG | 0.183195 | 4.3:-19814420 | MS.gene28755:CDS |
| AACGATCTGCAACACGCTTT+TGG | 0.237316 | 4.3:+19814820 | None:intergenic |
| CATTGACCGAAGGGCAGTTT+AGG | 0.321777 | 4.3:-19814512 | MS.gene28755:CDS |
| AATGAGATTGCTGCAAATAA+AGG | 0.333425 | 4.3:-19814267 | MS.gene28755:CDS |
| GAAATTGTGAGTTGTGCTTT+AGG | 0.338068 | 4.3:-19814549 | MS.gene28755:CDS |
| TTCGGCTATCAACTATCTTT+CGG | 0.358993 | 4.3:+19813854 | None:intergenic |
| TCAGCAAGCCGCTTGAGTTC+CGG | 0.359891 | 4.3:+19814058 | None:intergenic |
| AGCTATTCCTTGTCAGGATA+GGG | 0.367717 | 4.3:-19814181 | MS.gene28755:CDS |
| TACTCCATGTAAATTGCTTC+GGG | 0.371358 | 4.3:+19814136 | None:intergenic |
| ATTACATGTTCTTCGGTCAA+TGG | 0.376136 | 4.3:+19813970 | None:intergenic |
| TGTTGCAGCTATTCCTTGTC+AGG | 0.377112 | 4.3:-19814187 | MS.gene28755:CDS |
| CAGCTATTCCTTGTCAGGAT+AGG | 0.380570 | 4.3:-19814182 | MS.gene28755:CDS |
| ATGAATTGCTCTCGATTGTT+TGG | 0.386757 | 4.3:-19814770 | MS.gene28755:CDS |
| CTTTCTTCTTTGACTCGTCC+AGG | 0.391519 | 4.3:+19814085 | None:intergenic |
| ATGATTGATGAGAAAGAATC+AGG | 0.391748 | 4.3:-19814453 | MS.gene28755:CDS |
| CATGTAAATTGCTTCGGGAT+TGG | 0.393587 | 4.3:+19814141 | None:intergenic |
| CCGTATGTGGCAAAAGCAAC+TGG | 0.397968 | 4.3:-19814571 | MS.gene28755:CDS |
| GTACTCCATGTAAATTGCTT+CGG | 0.402466 | 4.3:+19814135 | None:intergenic |
| ACATGTAATGGAAGTTGAAC+AGG | 0.406076 | 4.3:-19813956 | MS.gene28755:CDS |
| TCTTTGACTCGTCCAGGATC+CGG | 0.408725 | 4.3:+19814091 | None:intergenic |
| AACTTCCATTACATGTTCTT+CGG | 0.411299 | 4.3:+19813963 | None:intergenic |
| TCCCTCACGTGGCGCTCCAA+TGG | 0.431848 | 4.3:+19813883 | None:intergenic |
| TCATTTGGTAGATCGTTGTT+TGG | 0.434869 | 4.3:-19814918 | MS.gene28755:CDS |
| TAGAGACGGGTTGGATCCAT+TGG | 0.436358 | 4.3:-19813899 | MS.gene28755:CDS |
| GGCATTCAAGATCACATTCA+TGG | 0.437225 | 4.3:-19814362 | MS.gene28755:CDS |
| TGCAATGGACTGTAGTTGCT+TGG | 0.438495 | 4.3:+19814314 | None:intergenic |
| CTAAACTGCCCTTCGGTCAA+TGG | 0.439271 | 4.3:+19814513 | None:intergenic |
| CTTGGCACATCAAACTATAC+AGG | 0.441341 | 4.3:-19813814 | MS.gene28755:CDS |
| GACAGCCACCCGCCACTTGA+CGG | 0.443396 | 4.3:-19814016 | MS.gene28755:CDS |
| CAATCCCGAAGCAATTTACA+TGG | 0.448669 | 4.3:-19814140 | MS.gene28755:CDS |
| GGAAGTTGAACAGGATTTGA+AGG | 0.450865 | 4.3:-19813947 | MS.gene28755:CDS |
| ATCTTTATTATTCAACAGAA+TGG | 0.452561 | 4.3:+19814698 | None:intergenic |
| CATTTGCACGAGGTGGAACC+AGG | 0.462052 | 4.3:+19814286 | None:intergenic |
| GCAGTTTAGGAGGGCGAGAA+AGG | 0.470954 | 4.3:-19814499 | MS.gene28755:CDS |
| GTTTGGTATGAGGCAGGACC+AGG | 0.472376 | 4.3:-19814901 | MS.gene28755:CDS |
| ATGAGATTGCTGCAAATAAA+GGG | 0.480948 | 4.3:-19814266 | MS.gene28755:CDS |
| CGCCCTCCTAAACTGCCCTT+CGG | 0.482592 | 4.3:+19814506 | None:intergenic |
| GGGAATCAAGCCCCTCAGTT+CGG | 0.484799 | 4.3:+19813836 | None:intergenic |
| TTCAGATGTCATACGATCCA+TGG | 0.485962 | 4.3:+19814659 | None:intergenic |
| CTCACTTTACGACCGGATCC+TGG | 0.488384 | 4.3:-19814103 | MS.gene28755:CDS |
| ATCGTTGTTTGGTATGAGGC+AGG | 0.489438 | 4.3:-19814907 | MS.gene28755:CDS |
| CATGGAGTGTCTCTAGGTCC+TGG | 0.490607 | 4.3:-19814344 | MS.gene28755:CDS |
| TGTGGAAGCAAGTCATGAAC+CGG | 0.491995 | 4.3:-19814871 | MS.gene28755:CDS |
| TAGTTGCTTGGCTGCAGACC+AGG | 0.494155 | 4.3:+19814326 | None:intergenic |
| GTAGATCGTTGTTTGGTATG+AGG | 0.498240 | 4.3:-19814911 | MS.gene28755:CDS |
| ACTGAGGGGCTTGATTCCCT+TGG | 0.498467 | 4.3:-19813832 | MS.gene28755:CDS |
| TGACCGAAGGGCAGTTTAGG+AGG | 0.504334 | 4.3:-19814509 | MS.gene28755:CDS |
| ATTTGTAATGCGGGTCGAGA+TGG | 0.508247 | 4.3:-19814606 | MS.gene28755:CDS |
| ATTGACCGAAGAACATGTAA+TGG | 0.508630 | 4.3:-19813968 | MS.gene28755:CDS |
| GACGAAAACGATGAAGAAGA+AGG | 0.517630 | 4.3:+19814939 | None:intergenic |
| TTTGTAATGCGGGTCGAGAT+GGG | 0.522127 | 4.3:-19814605 | MS.gene28755:CDS |
| TACCAGGTCCGTCAAGTGGC+GGG | 0.523722 | 4.3:+19814008 | None:intergenic |
| GATTCGTGTAATCTAGAGCT+TGG | 0.523932 | 4.3:-19814849 | MS.gene28755:CDS |
| CGAGAGCAATTCATAATCAC+TGG | 0.525583 | 4.3:+19814779 | None:intergenic |
| CACCCGCCACTTGACGGACC+TGG | 0.528971 | 4.3:-19814010 | MS.gene28755:CDS |
| GCACTAGACATTTGTAATGC+GGG | 0.531981 | 4.3:-19814615 | MS.gene28755:CDS |
| TGGAACCAGGTTATTTGCAA+TGG | 0.532348 | 4.3:+19814299 | None:intergenic |
| TCCATTGGAGCGCCACGTGA+GGG | 0.533658 | 4.3:-19813884 | MS.gene28755:CDS |
| AGCTCTAGATTACACGAATC+CGG | 0.535203 | 4.3:+19814852 | None:intergenic |
| GAGGGCGAGAAAGGCACTGA+TGG | 0.537995 | 4.3:-19814490 | MS.gene28755:CDS |
| GAACTCAAGCGGCTTGCTGA+AGG | 0.542765 | 4.3:-19814055 | MS.gene28755:CDS |
| CACATTCATGGAGTGTCTCT+AGG | 0.544575 | 4.3:-19814350 | MS.gene28755:CDS |
| ATCTGAATTCATTGAGAGGT+CGG | 0.548398 | 4.3:-19814643 | MS.gene28755:CDS |
| GCTATTCCTTGTCAGGATAG+GGG | 0.548433 | 4.3:-19814180 | MS.gene28755:CDS |
| CAGTTGCCTCACTTTACGAC+CGG | 0.549884 | 4.3:-19814110 | MS.gene28755:CDS |
| GGCACTGATGGATTTAGCAC+TGG | 0.556578 | 4.3:-19814478 | MS.gene28755:CDS |
| ACAAGGAATAGCTGCAACAA+GGG | 0.556963 | 4.3:+19814191 | None:intergenic |
| GAAACTGAGCAGAATCTACC+AGG | 0.561373 | 4.3:+19813992 | None:intergenic |
| ATAGTTGATAGCCGAACTGA+GGG | 0.570229 | 4.3:-19813847 | MS.gene28755:CDS |
| GACCGAAGGGCAGTTTAGGA+GGG | 0.570937 | 4.3:-19814508 | MS.gene28755:CDS |
| GACAAGGAATAGCTGCAACA+AGG | 0.579699 | 4.3:+19814190 | None:intergenic |
| ACGAAAACGATGAAGAAGAA+GGG | 0.593698 | 4.3:+19814940 | None:intergenic |
| TTGCTTCCACAGAATGAACC+TGG | 0.596071 | 4.3:+19814883 | None:intergenic |
| GTTTGTGAGAATGCCTTCCA+CGG | 0.596488 | 4.3:-19814973 | None:intergenic |
| ATTGGAGCGCCACGTGAGGG+AGG | 0.597373 | 4.3:-19813881 | MS.gene28755:CDS |
| ATCCATTGGAGCGCCACGTG+AGG | 0.600405 | 4.3:-19813885 | MS.gene28755:CDS |
| TCAGATGTCATACGATCCAT+GGG | 0.603285 | 4.3:+19814660 | None:intergenic |
| CAGGTCCGTCAAGTGGCGGG+TGG | 0.603406 | 4.3:+19814011 | None:intergenic |
| GGCACTAGACATTTGTAATG+CGG | 0.604362 | 4.3:-19814616 | MS.gene28755:CDS |
| CTACCAGGTCCGTCAAGTGG+CGG | 0.604768 | 4.3:+19814007 | None:intergenic |
| CTGTATAGTTTGATGTGCCA+AGG | 0.610377 | 4.3:+19813815 | None:intergenic |
| AGTCAAAGAAGAAAGAGCAC+CGG | 0.610994 | 4.3:-19814077 | MS.gene28755:CDS |
| GCAGGACCAGGTTCATTCTG+TGG | 0.612935 | 4.3:-19814889 | MS.gene28755:CDS |
| ATAAGCGACCATTGACCGAA+GGG | 0.613621 | 4.3:-19814521 | MS.gene28755:CDS |
| TGGGAGGCATAACTCGAGCA+AGG | 0.614020 | 4.3:-19814400 | MS.gene28755:CDS |
| ATTCATTGAGAGGTCGGTCA+AGG | 0.614129 | 4.3:-19814637 | MS.gene28755:CDS |
| GAATGGCTCTGAATTCATCA+TGG | 0.614996 | 4.3:+19814715 | None:intergenic |
| TTCGGAACACCTCCCTCACG+TGG | 0.618299 | 4.3:+19813872 | None:intergenic |
| GGATTGAGACTATCCGTATG+TGG | 0.621190 | 4.3:-19814584 | MS.gene28755:CDS |
| GCAATCTCATTTGCACGAGG+TGG | 0.622309 | 4.3:+19814279 | None:intergenic |
| TGTATAGTTTGATGTGCCAA+GGG | 0.623260 | 4.3:+19813816 | None:intergenic |
| TCAGTTATCGAAACCTCCCA+TGG | 0.624099 | 4.3:-19814676 | MS.gene28755:CDS |
| AAAGAGCACCGGAACTCAAG+CGG | 0.627839 | 4.3:-19814066 | MS.gene28755:CDS |
| CAGGATCCGGTCGTAAAGTG+AGG | 0.628978 | 4.3:+19814104 | None:intergenic |
| GATAGTTGATAGCCGAACTG+AGG | 0.632654 | 4.3:-19813848 | MS.gene28755:CDS |
| AATCTACCAGGTCCGTCAAG+TGG | 0.633418 | 4.3:+19814004 | None:intergenic |
| ACAGTCCATTGCAAATAACC+TGG | 0.633958 | 4.3:-19814304 | MS.gene28755:CDS |
| GCAAGGATAGTCATTCGACT+AGG | 0.636083 | 4.3:-19814383 | MS.gene28755:CDS |
| AATAAGCGACCATTGACCGA+AGG | 0.639297 | 4.3:-19814522 | MS.gene28755:CDS |
| TTTAAACCCCTATCCTGACA+AGG | 0.658776 | 4.3:+19814174 | None:intergenic |
| TTGGCACATCAAACTATACA+GGG | 0.662135 | 4.3:-19813813 | MS.gene28755:CDS |
| TGACATCTGAATTCATTGAG+AGG | 0.667207 | 4.3:-19814647 | MS.gene28755:CDS |
| GATGTCATACGATCCATGGG+AGG | 0.675731 | 4.3:+19814663 | None:intergenic |
| GCAGCAATCTCATTTGCACG+AGG | 0.681247 | 4.3:+19814276 | None:intergenic |
| TAGTTGATAGCCGAACTGAG+GGG | 0.803639 | 4.3:-19813846 | MS.gene28755:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATTATTCAACAGAA+TGG | + | chr4.3:19814075-19814094 | None:intergenic | 20.0% |
| !!! | ATCGTTTTAATGAACTTTCT+GGG | - | chr4.3:19813967-19813986 | MS.gene28755:CDS | 25.0% |
| AACTTCCATTACATGTTCTT+CGG | + | chr4.3:19814810-19814829 | None:intergenic | 30.0% | |
| AATGAGATTGCTGCAAATAA+AGG | - | chr4.3:19814503-19814522 | MS.gene28755:CDS | 30.0% | |
| ATGAGATTGCTGCAAATAAA+GGG | - | chr4.3:19814504-19814523 | MS.gene28755:CDS | 30.0% | |
| ATGATTGATGAGAAAGAATC+AGG | - | chr4.3:19814317-19814336 | MS.gene28755:CDS | 30.0% | |
| !! | GATCGTTTTAATGAACTTTC+TGG | - | chr4.3:19813966-19813985 | MS.gene28755:CDS | 30.0% |
| !! | TCGTTTTAATGAACTTTCTG+GGG | - | chr4.3:19813968-19813987 | MS.gene28755:CDS | 30.0% |
| !!! | GTATTCTCTTGTTTGTTTTG+TGG | - | chr4.3:19814555-19814574 | MS.gene28755:CDS | 30.0% |
| ACGAAAACGATGAAGAAGAA+GGG | + | chr4.3:19813833-19813852 | None:intergenic | 35.0% | |
| ATCTGAATTCATTGAGAGGT+CGG | - | chr4.3:19814127-19814146 | MS.gene28755:CDS | 35.0% | |
| ATGAATTGCTCTCGATTGTT+TGG | - | chr4.3:19814000-19814019 | MS.gene28755:CDS | 35.0% | |
| ATTACATGTTCTTCGGTCAA+TGG | + | chr4.3:19814803-19814822 | None:intergenic | 35.0% | |
| ATTGACCGAAGAACATGTAA+TGG | - | chr4.3:19814802-19814821 | MS.gene28755:CDS | 35.0% | |
| GAAATTGTGAGTTGTGCTTT+AGG | - | chr4.3:19814221-19814240 | MS.gene28755:CDS | 35.0% | |
| GTACTCCATGTAAATTGCTT+CGG | + | chr4.3:19814638-19814657 | None:intergenic | 35.0% | |
| TACTCCATGTAAATTGCTTC+GGG | + | chr4.3:19814637-19814656 | None:intergenic | 35.0% | |
| TCATTTGGTAGATCGTTGTT+TGG | - | chr4.3:19813852-19813871 | MS.gene28755:CDS | 35.0% | |
| TGACATCTGAATTCATTGAG+AGG | - | chr4.3:19814123-19814142 | MS.gene28755:CDS | 35.0% | |
| TGTATAGTTTGATGTGCCAA+GGG | + | chr4.3:19814957-19814976 | None:intergenic | 35.0% | |
| TTCGGCTATCAACTATCTTT+CGG | + | chr4.3:19814919-19814938 | None:intergenic | 35.0% | |
| TTGGCACATCAAACTATACA+GGG | - | chr4.3:19814957-19814976 | MS.gene28755:CDS | 35.0% | |
| ! | ACATGTAATGGAAGTTGAAC+AGG | - | chr4.3:19814814-19814833 | MS.gene28755:CDS | 35.0% |
| ! | TCTTCATCGTTTTCGTCATT+TGG | - | chr4.3:19813837-19813856 | MS.gene28755:CDS | 35.0% |
| ACAAGGAATAGCTGCAACAA+GGG | + | chr4.3:19814582-19814601 | None:intergenic | 40.0% | |
| ACAGTCCATTGCAAATAACC+TGG | - | chr4.3:19814466-19814485 | MS.gene28755:CDS | 40.0% | |
| AGCTATTCCTTGTCAGGATA+GGG | - | chr4.3:19814589-19814608 | MS.gene28755:CDS | 40.0% | |
| CAATCCCGAAGCAATTTACA+TGG | - | chr4.3:19814630-19814649 | MS.gene28755:CDS | 40.0% | |
| CATGTAAATTGCTTCGGGAT+TGG | + | chr4.3:19814632-19814651 | None:intergenic | 40.0% | |
| CGAGAGCAATTCATAATCAC+TGG | + | chr4.3:19813994-19814013 | None:intergenic | 40.0% | |
| CTGTATAGTTTGATGTGCCA+AGG | + | chr4.3:19814958-19814977 | None:intergenic | 40.0% | |
| CTTGGCACATCAAACTATAC+AGG | - | chr4.3:19814956-19814975 | MS.gene28755:CDS | 40.0% | |
| GACGAAAACGATGAAGAAGA+AGG | + | chr4.3:19813834-19813853 | None:intergenic | 40.0% | |
| GCACTAGACATTTGTAATGC+GGG | - | chr4.3:19814155-19814174 | MS.gene28755:CDS | 40.0% | |
| GGAAGTTGAACAGGATTTGA+AGG | - | chr4.3:19814823-19814842 | MS.gene28755:CDS | 40.0% | |
| GGCACTAGACATTTGTAATG+CGG | - | chr4.3:19814154-19814173 | MS.gene28755:CDS | 40.0% | |
| GGCATTCAAGATCACATTCA+TGG | - | chr4.3:19814408-19814427 | MS.gene28755:CDS | 40.0% | |
| GTAGATCGTTGTTTGGTATG+AGG | - | chr4.3:19813859-19813878 | MS.gene28755:CDS | 40.0% | |
| TCAGATGTCATACGATCCAT+GGG | + | chr4.3:19814113-19814132 | None:intergenic | 40.0% | |
| TGGAACCAGGTTATTTGCAA+TGG | + | chr4.3:19814474-19814493 | None:intergenic | 40.0% | |
| TTCAGATGTCATACGATCCA+TGG | + | chr4.3:19814114-19814133 | None:intergenic | 40.0% | |
| TTTAAACCCCTATCCTGACA+AGG | + | chr4.3:19814599-19814618 | None:intergenic | 40.0% | |
| ! | AGTCAAAGAAGAAAGAGCAC+CGG | - | chr4.3:19814693-19814712 | MS.gene28755:CDS | 40.0% |
| ! | CTCAGCGTCATAGATCTTTT+GGG | - | chr4.3:19814351-19814370 | MS.gene28755:CDS | 40.0% |
| ! | GATTCGTGTAATCTAGAGCT+TGG | - | chr4.3:19813921-19813940 | MS.gene28755:CDS | 40.0% |
| ! | TCTCAGCGTCATAGATCTTT+TGG | - | chr4.3:19814350-19814369 | MS.gene28755:CDS | 40.0% |
| !! | AGCTCTAGATTACACGAATC+CGG | + | chr4.3:19813921-19813940 | None:intergenic | 40.0% |
| !! | ATAGTTGATAGCCGAACTGA+GGG | - | chr4.3:19814923-19814942 | MS.gene28755:CDS | 40.0% |
| !! | CTTCAGAAGCTTTTAGAGAC+GGG | - | chr4.3:19814858-19814877 | MS.gene28755:CDS | 40.0% |
| !! | GAATGGCTCTGAATTCATCA+TGG | + | chr4.3:19814058-19814077 | None:intergenic | 40.0% |
| !! | GCTTCAGAAGCTTTTAGAGA+CGG | - | chr4.3:19814857-19814876 | MS.gene28755:CDS | 40.0% |
| AATAAGCGACCATTGACCGA+AGG | - | chr4.3:19814248-19814267 | MS.gene28755:CDS | 45.0% | |
| ATAAGCGACCATTGACCGAA+GGG | - | chr4.3:19814249-19814268 | MS.gene28755:CDS | 45.0% | |
| ATCGTTGTTTGGTATGAGGC+AGG | - | chr4.3:19813863-19813882 | MS.gene28755:CDS | 45.0% | |
| ATTCATTGAGAGGTCGGTCA+AGG | - | chr4.3:19814133-19814152 | MS.gene28755:CDS | 45.0% | |
| ATTTGTAATGCGGGTCGAGA+TGG | - | chr4.3:19814164-19814183 | MS.gene28755:CDS | 45.0% | |
| CAGCTATTCCTTGTCAGGAT+AGG | - | chr4.3:19814588-19814607 | MS.gene28755:CDS | 45.0% | |
| GAAACTGAGCAGAATCTACC+AGG | + | chr4.3:19814781-19814800 | None:intergenic | 45.0% | |
| GACAAGGAATAGCTGCAACA+AGG | + | chr4.3:19814583-19814602 | None:intergenic | 45.0% | |
| GCAAGGATAGTCATTCGACT+AGG | - | chr4.3:19814387-19814406 | MS.gene28755:CDS | 45.0% | |
| GCTATTCCTTGTCAGGATAG+GGG | - | chr4.3:19814590-19814609 | MS.gene28755:CDS | 45.0% | |
| GGATTGAGACTATCCGTATG+TGG | - | chr4.3:19814186-19814205 | MS.gene28755:CDS | 45.0% | |
| TCAGTTATCGAAACCTCCCA+TGG | - | chr4.3:19814094-19814113 | MS.gene28755:CDS | 45.0% | |
| TGTGGAAGCAAGTCATGAAC+CGG | - | chr4.3:19813899-19813918 | MS.gene28755:CDS | 45.0% | |
| TGTTGCAGCTATTCCTTGTC+AGG | - | chr4.3:19814583-19814602 | MS.gene28755:CDS | 45.0% | |
| TTGCTTCCACAGAATGAACC+TGG | + | chr4.3:19813890-19813909 | None:intergenic | 45.0% | |
| TTTGTAATGCGGGTCGAGAT+GGG | - | chr4.3:19814165-19814184 | MS.gene28755:CDS | 45.0% | |
| ! | AACGATCTGCAACACGCTTT+TGG | + | chr4.3:19813953-19813972 | None:intergenic | 45.0% |
| ! | AGCGTCATAGATCTTTTGGG+AGG | - | chr4.3:19814354-19814373 | MS.gene28755:CDS | 45.0% |
| ! | CACATTCATGGAGTGTCTCT+AGG | - | chr4.3:19814420-19814439 | MS.gene28755:CDS | 45.0% |
| ! | CTTTCTTCTTTGACTCGTCC+AGG | + | chr4.3:19814688-19814707 | None:intergenic | 45.0% |
| !! | AGAAGCTTTTAGAGACGGGT+TGG | - | chr4.3:19814862-19814881 | MS.gene28755:CDS | 45.0% |
| !! | GATAGTTGATAGCCGAACTG+AGG | - | chr4.3:19814922-19814941 | MS.gene28755:CDS | 45.0% |
| !! | TAGTTGATAGCCGAACTGAG+GGG | - | chr4.3:19814924-19814943 | MS.gene28755:CDS | 45.0% |
| !! | TGCAATGGACTGTAGTTGCT+TGG | + | chr4.3:19814459-19814478 | None:intergenic | 45.0% |
| !!! | CCAGTTGCTTTTGCCACATA+CGG | + | chr4.3:19814202-19814221 | None:intergenic | 45.0% |
| AATCTACCAGGTCCGTCAAG+TGG | + | chr4.3:19814769-19814788 | None:intergenic | 50.0% | |
| CAGTTGCCTCACTTTACGAC+CGG | - | chr4.3:19814660-19814679 | MS.gene28755:CDS | 50.0% | |
| CATTGACCGAAGGGCAGTTT+AGG | - | chr4.3:19814258-19814277 | MS.gene28755:CDS | 50.0% | |
| CCGTATGTGGCAAAAGCAAC+TGG | - | chr4.3:19814199-19814218 | MS.gene28755:CDS | 50.0% | |
| CTAAACTGCCCTTCGGTCAA+TGG | + | chr4.3:19814260-19814279 | None:intergenic | 50.0% | |
| GATGTCATACGATCCATGGG+AGG | + | chr4.3:19814110-19814129 | None:intergenic | 50.0% | |
| GCAATCTCATTTGCACGAGG+TGG | + | chr4.3:19814494-19814513 | None:intergenic | 50.0% | |
| GCAGCAATCTCATTTGCACG+AGG | + | chr4.3:19814497-19814516 | None:intergenic | 50.0% | |
| ! | TCTTTGACTCGTCCAGGATC+CGG | + | chr4.3:19814682-19814701 | None:intergenic | 50.0% |
| !! | AAAGAGCACCGGAACTCAAG+CGG | - | chr4.3:19814704-19814723 | MS.gene28755:CDS | 50.0% |
| !! | AGAAGGGCTCTGATTTTCCG+TGG | + | chr4.3:19813817-19813836 | None:intergenic | 50.0% |
| !! | GGCACTGATGGATTTAGCAC+TGG | - | chr4.3:19814292-19814311 | MS.gene28755:CDS | 50.0% |
| !! | TAGAGACGGGTTGGATCCAT+TGG | - | chr4.3:19814871-19814890 | MS.gene28755:CDS | 50.0% |
| ACTGAGGGGCTTGATTCCCT+TGG | - | chr4.3:19814938-19814957 | MS.gene28755:CDS | 55.0% | |
| CAGGATCCGGTCGTAAAGTG+AGG | + | chr4.3:19814669-19814688 | None:intergenic | 55.0% | |
| CATTTGCACGAGGTGGAACC+AGG | + | chr4.3:19814487-19814506 | None:intergenic | 55.0% | |
| CTCACTTTACGACCGGATCC+TGG | - | chr4.3:19814667-19814686 | MS.gene28755:CDS | 55.0% | |
| GACCGAAGGGCAGTTTAGGA+GGG | - | chr4.3:19814262-19814281 | MS.gene28755:CDS | 55.0% | |
| GCAGGACCAGGTTCATTCTG+TGG | - | chr4.3:19813881-19813900 | MS.gene28755:CDS | 55.0% | |
| GCAGTTTAGGAGGGCGAGAA+AGG | - | chr4.3:19814271-19814290 | MS.gene28755:CDS | 55.0% | |
| GGGAATCAAGCCCCTCAGTT+CGG | + | chr4.3:19814937-19814956 | None:intergenic | 55.0% | |
| GTTTGGTATGAGGCAGGACC+AGG | - | chr4.3:19813869-19813888 | MS.gene28755:CDS | 55.0% | |
| TAGTTGCTTGGCTGCAGACC+AGG | + | chr4.3:19814447-19814466 | None:intergenic | 55.0% | |
| TCAGCAAGCCGCTTGAGTTC+CGG | + | chr4.3:19814715-19814734 | None:intergenic | 55.0% | |
| TGACCGAAGGGCAGTTTAGG+AGG | - | chr4.3:19814261-19814280 | MS.gene28755:CDS | 55.0% | |
| ! | CATGGAGTGTCTCTAGGTCC+TGG | - | chr4.3:19814426-19814445 | MS.gene28755:CDS | 55.0% |
| ! | TGGGAGGCATAACTCGAGCA+AGG | - | chr4.3:19814370-19814389 | MS.gene28755:CDS | 55.0% |
| !! | GAACTCAAGCGGCTTGCTGA+AGG | - | chr4.3:19814715-19814734 | MS.gene28755:CDS | 55.0% |
| !! | GGGCTCTGATTTTCCGTGGA+AGG | + | chr4.3:19813813-19813832 | None:intergenic | 55.0% |
| CGCCCTCCTAAACTGCCCTT+CGG | + | chr4.3:19814267-19814286 | None:intergenic | 60.0% | |
| CTACCAGGTCCGTCAAGTGG+CGG | + | chr4.3:19814766-19814785 | None:intergenic | 60.0% | |
| TACCAGGTCCGTCAAGTGGC+GGG | + | chr4.3:19814765-19814784 | None:intergenic | 60.0% | |
| TTCGGAACACCTCCCTCACG+TGG | + | chr4.3:19814901-19814920 | None:intergenic | 60.0% | |
| ! | ATCCATTGGAGCGCCACGTG+AGG | - | chr4.3:19814885-19814904 | MS.gene28755:CDS | 60.0% |
| ! | TCCATTGGAGCGCCACGTGA+GGG | - | chr4.3:19814886-19814905 | MS.gene28755:CDS | 60.0% |
| !! | GAGGGCGAGAAAGGCACTGA+TGG | - | chr4.3:19814280-19814299 | MS.gene28755:CDS | 60.0% |
| GACAGCCACCCGCCACTTGA+CGG | - | chr4.3:19814754-19814773 | MS.gene28755:CDS | 65.0% | |
| TCCCTCACGTGGCGCTCCAA+TGG | + | chr4.3:19814890-19814909 | None:intergenic | 65.0% | |
| ! | ATTGGAGCGCCACGTGAGGG+AGG | - | chr4.3:19814889-19814908 | MS.gene28755:CDS | 65.0% |
| ! | CACCCGCCACTTGACGGACC+TGG | - | chr4.3:19814760-19814779 | MS.gene28755:CDS | 70.0% |
| ! | CAGGTCCGTCAAGTGGCGGG+TGG | + | chr4.3:19814762-19814781 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19813807 | 19814985 | 19813807 | ID=MS.gene28755 |
| chr4.3 | mRNA | 19813807 | 19814985 | 19813807 | ID=MS.gene28755.t1;Parent=MS.gene28755 |
| chr4.3 | exon | 19813807 | 19814985 | 19813807 | ID=MS.gene28755.t1.exon1;Parent=MS.gene28755.t1 |
| chr4.3 | CDS | 19813807 | 19814985 | 19813807 | ID=cds.MS.gene28755.t1;Parent=MS.gene28755.t1 |
| Gene Sequence |
| Protein sequence |
