Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29069.t1 | XP_013460983.1 | 94.9 | 752 | 36 | 2 | 1 | 751 | 1 | 751 | 0.00E+00 | 1468 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29069.t1 | Q94A08 | 50.5 | 770 | 336 | 8 | 1 | 738 | 1 | 757 | 1.1e-234 | 814.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29069.t1 | A0A072UZM9 | 94.9 | 752 | 36 | 2 | 1 | 751 | 1 | 751 | 0.0e+00 | 1468.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050463 | MS.gene29069 | 0.834894 | 2.30E-56 | -1.69E-46 |
| MS.gene050528 | MS.gene29069 | 0.831595 | 1.53E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29069.t1 | MTR_3g075510 | 94.016 | 752 | 43 | 2 | 1 | 751 | 1 | 751 | 0.0 | 1452 |
| MS.gene29069.t1 | MTR_3g075510 | 94.006 | 634 | 36 | 2 | 1 | 633 | 1 | 633 | 0.0 | 1218 |
| MS.gene29069.t1 | MTR_1g052515 | 50.941 | 744 | 339 | 6 | 1 | 738 | 1 | 724 | 0.0 | 745 |
| MS.gene29069.t1 | MTR_7g091880 | 48.307 | 768 | 353 | 7 | 1 | 738 | 1 | 754 | 0.0 | 735 |
| MS.gene29069.t1 | MTR_5g096820 | 47.207 | 752 | 375 | 8 | 1 | 738 | 1 | 744 | 0.0 | 715 |
| MS.gene29069.t1 | MTR_4g115330 | 45.007 | 751 | 354 | 12 | 1 | 739 | 76 | 779 | 0.0 | 648 |
| MS.gene29069.t1 | MTR_5g096820 | 47.745 | 643 | 318 | 6 | 1 | 630 | 1 | 638 | 0.0 | 644 |
| MS.gene29069.t1 | MTR_4g115330 | 46.696 | 681 | 330 | 9 | 65 | 739 | 1 | 654 | 0.0 | 639 |
| MS.gene29069.t1 | MTR_3g077280 | 37.500 | 784 | 422 | 16 | 9 | 751 | 30 | 786 | 3.42e-175 | 522 |
| MS.gene29069.t1 | MTR_4g105250 | 36.086 | 787 | 429 | 17 | 8 | 751 | 23 | 778 | 8.85e-167 | 500 |
| MS.gene29069.t1 | MTR_6g004880 | 37.270 | 762 | 400 | 16 | 9 | 727 | 37 | 763 | 1.10e-164 | 495 |
| MS.gene29069.t1 | MTR_1g097450 | 32.515 | 815 | 417 | 21 | 23 | 738 | 58 | 838 | 7.40e-126 | 396 |
| MS.gene29069.t1 | MTR_7g106910 | 37.892 | 446 | 254 | 8 | 307 | 738 | 407 | 843 | 1.35e-87 | 295 |
| MS.gene29069.t1 | MTR_7g106910 | 34.091 | 264 | 149 | 3 | 23 | 280 | 54 | 298 | 7.46e-41 | 161 |
| MS.gene29069.t1 | MTR_8g088020 | 34.151 | 530 | 305 | 12 | 235 | 738 | 312 | 823 | 3.39e-83 | 282 |
| MS.gene29069.t1 | MTR_8g088020 | 32.959 | 267 | 148 | 4 | 23 | 280 | 53 | 297 | 2.25e-40 | 159 |
| MS.gene29069.t1 | MTR_7g109790 | 36.418 | 335 | 201 | 6 | 406 | 733 | 9 | 338 | 1.09e-58 | 203 |
| MS.gene29069.t1 | MTR_5g065520 | 41.631 | 233 | 94 | 6 | 510 | 738 | 213 | 407 | 6.18e-41 | 155 |
| MS.gene29069.t1 | MTR_7g055620 | 33.333 | 105 | 67 | 1 | 81 | 185 | 225 | 326 | 4.30e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29069.t1 | AT3G57520 | 50.519 | 770 | 336 | 8 | 1 | 738 | 1 | 757 | 0.0 | 815 |
| MS.gene29069.t1 | AT3G57520 | 52.474 | 667 | 294 | 6 | 1 | 657 | 1 | 654 | 0.0 | 748 |
| MS.gene29069.t1 | AT1G55740 | 48.936 | 752 | 357 | 8 | 1 | 738 | 1 | 739 | 0.0 | 700 |
| MS.gene29069.t1 | AT5G20250 | 45.539 | 751 | 379 | 12 | 1 | 739 | 1 | 733 | 0.0 | 662 |
| MS.gene29069.t1 | AT5G20250 | 45.539 | 751 | 379 | 12 | 1 | 739 | 1 | 733 | 0.0 | 662 |
| MS.gene29069.t1 | AT5G20250 | 45.539 | 751 | 379 | 12 | 1 | 739 | 1 | 733 | 0.0 | 662 |
| MS.gene29069.t1 | AT5G20250 | 45.539 | 751 | 379 | 13 | 1 | 739 | 96 | 828 | 0.0 | 662 |
| MS.gene29069.t1 | AT3G57520 | 53.968 | 567 | 243 | 4 | 1 | 562 | 1 | 554 | 0.0 | 654 |
| MS.gene29069.t1 | AT5G40390 | 37.056 | 788 | 425 | 16 | 8 | 751 | 23 | 783 | 1.41e-169 | 507 |
| MS.gene29069.t1 | AT4G01970 | 36.344 | 454 | 262 | 13 | 303 | 736 | 412 | 858 | 2.28e-84 | 286 |
| MS.gene29069.t1 | AT4G01970 | 35.088 | 285 | 142 | 4 | 21 | 281 | 49 | 314 | 7.49e-44 | 171 |
| MS.gene29069.t1 | AT4G01970 | 36.344 | 454 | 262 | 13 | 303 | 736 | 459 | 905 | 6.86e-84 | 286 |
| MS.gene29069.t1 | AT4G01970 | 35.088 | 285 | 142 | 4 | 21 | 281 | 96 | 361 | 1.09e-43 | 170 |
Find 173 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACAGTCTGCTGAAAATT+TGG | 0.133304 | 3.4:-73940650 | MS.gene29069:intron |
| TACTCGAGATTGTTTGTTTC+AGG | 0.138623 | 3.4:-73940783 | MS.gene29069:CDS |
| CTAATGTTTCTATCAAATTT+TGG | 0.150455 | 3.4:+73941544 | None:intergenic |
| CATTCTCTTCTTGCCTGTTT+TGG | 0.169995 | 3.4:-73942850 | MS.gene29069:CDS |
| CCGACACACTTAACCATTTC+AGG | 0.207056 | 3.4:-73940543 | MS.gene29069:CDS |
| GCCTTCACCATCAAGTTTAA+TGG | 0.214336 | 3.4:+73939710 | None:intergenic |
| AAGAGGTTGCTGGTGAAAAT+TGG | 0.234540 | 3.4:-73940488 | MS.gene29069:CDS |
| TTTCTGTCATCTTGAAAATA+AGG | 0.241361 | 3.4:-73942439 | MS.gene29069:CDS |
| CCTGTACATCTTGATTTGTT+TGG | 0.257621 | 3.4:-73942411 | MS.gene29069:CDS |
| ACAACTCTGATTCAATTTAC+AGG | 0.265456 | 3.4:-73941413 | MS.gene29069:intron |
| GCATGCTTTAGCTGGTTATT+GGG | 0.271441 | 3.4:-73941787 | MS.gene29069:CDS |
| CATATGTATAAACAGGTATT+TGG | 0.294074 | 3.4:-73939957 | MS.gene29069:intron |
| GGCATGCTTTAGCTGGTTAT+TGG | 0.294226 | 3.4:-73941788 | MS.gene29069:CDS |
| GGCAGAGGATGTGGCCGATT+TGG | 0.301018 | 3.4:-73939819 | MS.gene29069:CDS |
| TTCCTAATGACATAGGATAT+TGG | 0.303139 | 3.4:-73942478 | MS.gene29069:intron |
| AAAATATATGCAGGGGATAT+AGG | 0.312570 | 3.4:-73943049 | MS.gene29069:intron |
| CTTTATTTAGAGTCAAAATA+TGG | 0.313807 | 3.4:-73943019 | MS.gene29069:CDS |
| GTCTACAAACATGACTATTT+CGG | 0.314200 | 3.4:-73943454 | None:intergenic |
| TACTGGGTTCCTTCAATTAT+CGG | 0.317199 | 3.4:+73942121 | None:intergenic |
| ATCCAGTAATGGATGGTAAA+AGG | 0.326549 | 3.4:-73940760 | MS.gene29069:intron |
| AACAAGGCTGATAGACATTA+AGG | 0.327395 | 3.4:-73942014 | MS.gene29069:CDS |
| CAAAATTTGATAGAAACATT+AGG | 0.332651 | 3.4:-73941543 | MS.gene29069:CDS |
| GAGGCAGTATTTGTAAATTC+AGG | 0.334499 | 3.4:-73942619 | MS.gene29069:CDS |
| TTGATAGAAACATTAGGTTC+AGG | 0.347566 | 3.4:-73941537 | MS.gene29069:CDS |
| TTGCTTGACATGTACAATTC+AGG | 0.347876 | 3.4:-73939906 | MS.gene29069:CDS |
| CATATGCAATTTGCGCCAAT+TGG | 0.348061 | 3.4:-73939930 | MS.gene29069:CDS |
| GTGGTTTCCGATGGTTTCAT+TGG | 0.349098 | 3.4:+73940567 | None:intergenic |
| TATATACAGTATCTCCAATC+AGG | 0.361816 | 3.4:-73940068 | MS.gene29069:CDS |
| AACATTCAAACCTGCATTGA+AGG | 0.378084 | 3.4:+73940443 | None:intergenic |
| GAATCTTTGATTAGCTCAAA+TGG | 0.384220 | 3.4:+73942589 | None:intergenic |
| TAATCCATCTTCAGAGTTGT+AGG | 0.389057 | 3.4:+73939737 | None:intergenic |
| AACCACTTTCAACGCAGAAT+TGG | 0.394094 | 3.4:+73942781 | None:intergenic |
| GAGAGATATTTGTGCCAGAC+TGG | 0.399133 | 3.4:-73941185 | MS.gene29069:CDS |
| GTGGAACCAGCTGACTGAAT+TGG | 0.406736 | 3.4:+73941708 | None:intergenic |
| ACATGTAAGGTTTGAAATGT+TGG | 0.411578 | 3.4:+73941240 | None:intergenic |
| AAAGCAGATCCTGCTGAAAC+AGG | 0.415681 | 3.4:+73943348 | None:intergenic |
| GTTTGAAATGTTGGTTCCCT+TGG | 0.415913 | 3.4:+73941249 | None:intergenic |
| TTGGCCAGCTTCCTGCTCCT+TGG | 0.418002 | 3.4:+73940586 | None:intergenic |
| AATAAGCTGACTGGGGTCAT+AGG | 0.419910 | 3.4:-73940621 | MS.gene29069:CDS |
| TGTCCATGGCTATATCTCTA+AGG | 0.420570 | 3.4:+73941679 | None:intergenic |
| TTACTGACCATTAAACTTGA+TGG | 0.421279 | 3.4:-73939717 | MS.gene29069:CDS |
| CATGCAGCAGCAAGAGCAAT+AGG | 0.421395 | 3.4:-73941029 | MS.gene29069:CDS |
| AGATATAGCCATGGACAGCC+TGG | 0.423263 | 3.4:-73941673 | MS.gene29069:CDS |
| GTTGTTTCTCCTGTTTCAGC+AGG | 0.423456 | 3.4:-73943357 | MS.gene29069:CDS |
| AAGTTTATCATCGTTGATGA+TGG | 0.424891 | 3.4:-73942184 | MS.gene29069:CDS |
| CGAAAGGCTCCATCCAAAAC+AGG | 0.427176 | 3.4:+73942837 | None:intergenic |
| GTCTTTAATTGCCAAGGAGC+AGG | 0.431429 | 3.4:-73940597 | MS.gene29069:CDS |
| TGAATTGGATATACAAGCTT+CGG | 0.437132 | 3.4:+73941723 | None:intergenic |
| ATTTGTTTGGATGGTGCACT+TGG | 0.437449 | 3.4:-73942398 | MS.gene29069:CDS |
| GAGTTTCTTCAAGAGGTTGC+TGG | 0.438427 | 3.4:-73940498 | MS.gene29069:CDS |
| GGTGAAGGACGATTGCCTTA+TGG | 0.440385 | 3.4:-73943421 | MS.gene29069:CDS |
| GACTATTTCGGTTGTACCTA+AGG | 0.440852 | 3.4:-73943442 | MS.gene29069:CDS |
| AGGAAAATTAGAAGTATCCT+TGG | 0.441630 | 3.4:-73940109 | MS.gene29069:CDS |
| GTGGTTGTGCAGTATATGTT+AGG | 0.445136 | 3.4:-73941007 | MS.gene29069:intron |
| GTCATAACACCAACCCTGAT+TGG | 0.447307 | 3.4:+73940054 | None:intergenic |
| TGATAGAAACATTAGGTTCA+GGG | 0.448878 | 3.4:-73941536 | MS.gene29069:CDS |
| ATTCAGTCAGCTGGTTCCAC+AGG | 0.456336 | 3.4:-73941705 | MS.gene29069:CDS |
| AAGAAGCTAGTACTACCTAA+TGG | 0.457727 | 3.4:-73940839 | MS.gene29069:CDS |
| CTTGCTAGCTGTGGCGTCGA+TGG | 0.462315 | 3.4:-73941582 | MS.gene29069:CDS |
| TACATCTTGATTTGTTTGGA+TGG | 0.464444 | 3.4:-73942407 | MS.gene29069:CDS |
| AGCTACCGACGCAACATGTA+AGG | 0.465646 | 3.4:+73941227 | None:intergenic |
| GCTCTCAAGACTGATCCATT+AGG | 0.466280 | 3.4:+73940824 | None:intergenic |
| TACATGTGGCATGCTTTAGC+TGG | 0.471549 | 3.4:-73941795 | MS.gene29069:CDS |
| GTATATCCAATTCAGTCAGC+TGG | 0.476978 | 3.4:-73941714 | MS.gene29069:CDS |
| GACGTGTTTCATTAACAAAA+CGG | 0.477430 | 3.4:-73941506 | MS.gene29069:CDS |
| ATTGCCAAGGAGCAGGAAGC+TGG | 0.478211 | 3.4:-73940590 | MS.gene29069:CDS |
| AGGCAATCGTCCTTCACCTT+AGG | 0.479610 | 3.4:+73943426 | None:intergenic |
| AGGCAGTATTTGTAAATTCA+GGG | 0.482966 | 3.4:-73942618 | MS.gene29069:CDS |
| CCAAACAAATCAAGATGTAC+AGG | 0.483982 | 3.4:+73942411 | None:intergenic |
| ATACTATATGCCTTCAATGC+AGG | 0.489268 | 3.4:-73940453 | MS.gene29069:intron |
| CTATTGCTCTTGCTGCTGCA+TGG | 0.489450 | 3.4:+73941030 | None:intergenic |
| TCACGTTGCCCCTCACCATA+AGG | 0.490694 | 3.4:+73943406 | None:intergenic |
| CATTGGAGTACGCTCCAAAT+CGG | 0.495713 | 3.4:+73939805 | None:intergenic |
| AAGTTGCTTGGTGGACATGC+AGG | 0.496836 | 3.4:-73939772 | MS.gene29069:CDS |
| GGTGGATGATACCGCGTGTT+GGG | 0.496853 | 3.4:-73942998 | MS.gene29069:CDS |
| ACATGACGGGAACTAGGAAT+AGG | 0.497061 | 3.4:+73943309 | None:intergenic |
| AGAAGCAATTGAGTTTCCAT+TGG | 0.497684 | 3.4:+73942957 | None:intergenic |
| CTCCAATTCTGCGTTGAAAG+TGG | 0.497807 | 3.4:-73942783 | MS.gene29069:intron |
| ACTTGGAACATGTCCCAGTC+TGG | 0.497856 | 3.4:+73941171 | None:intergenic |
| GTCTTGAGAGCAAGATATGC+TGG | 0.497867 | 3.4:-73940812 | MS.gene29069:CDS |
| GCCTTTCGCGCAACTTTGCA+AGG | 0.499278 | 3.4:-73942822 | MS.gene29069:CDS |
| CATGCTTTAGCTGGTTATTG+GGG | 0.500822 | 3.4:-73941786 | MS.gene29069:CDS |
| TAGAAGAATTGTCCTGCGTA+AGG | 0.500958 | 3.4:-73939875 | MS.gene29069:CDS |
| TCCCGTCATGTCTTCACCCT+CGG | 0.502127 | 3.4:-73943297 | MS.gene29069:CDS |
| AACATCAAAGGCAGAGGATG+TGG | 0.504719 | 3.4:-73939828 | MS.gene29069:CDS |
| TCCTTGCAAAGTTGCGCGAA+AGG | 0.505821 | 3.4:+73942821 | None:intergenic |
| GTGAAGACATGACGGGAACT+AGG | 0.507395 | 3.4:+73943303 | None:intergenic |
| GAGATTGTTGCAAGAACTGT+TGG | 0.507789 | 3.4:+73941964 | None:intergenic |
| TCTTCACCCTCGGCACTCTC+CGG | 0.511704 | 3.4:-73943287 | MS.gene29069:intron |
| TTTGTTTCAGGATCCAGTAA+TGG | 0.516931 | 3.4:-73940771 | MS.gene29069:CDS |
| TCATCAACGATGATAAACTT+TGG | 0.518122 | 3.4:+73942187 | None:intergenic |
| TGCAGTAGCAAGAGCATCTG+AGG | 0.518388 | 3.4:-73941280 | MS.gene29069:CDS |
| GCTTTAGCTGGTTATTGGGG+AGG | 0.526230 | 3.4:-73941783 | MS.gene29069:CDS |
| GGAACTTGAATAAGCTGACT+GGG | 0.528230 | 3.4:-73940629 | MS.gene29069:CDS |
| GGAAACTCAATTGCTTCTAG+TGG | 0.531099 | 3.4:-73942952 | MS.gene29069:CDS |
| TACATGTCAAGCAATCCAAT+TGG | 0.532755 | 3.4:+73939915 | None:intergenic |
| GAAGGCGAACCGATAATTGA+AGG | 0.534207 | 3.4:-73942130 | MS.gene29069:CDS |
| AATTTACAAATACTGCCTCA+TGG | 0.536522 | 3.4:+73942623 | None:intergenic |
| TGATGTTGAGTTTCTTCAAG+AGG | 0.537617 | 3.4:-73940505 | MS.gene29069:CDS |
| GGATTGTGAAGTTTGAACAT+AGG | 0.539175 | 3.4:+73942645 | None:intergenic |
| TGGAACTTGAATAAGCTGAC+TGG | 0.542627 | 3.4:-73940630 | MS.gene29069:CDS |
| CTTGGTGGACATGCAGGAGA+AGG | 0.542712 | 3.4:-73939766 | MS.gene29069:CDS |
| TTATCATCGTTGATGATGGA+TGG | 0.546645 | 3.4:-73942180 | MS.gene29069:CDS |
| CACAGTTATCTTGCTAGCTG+TGG | 0.548683 | 3.4:-73941591 | MS.gene29069:CDS |
| TGAAGAAACTCAACATCAAG+TGG | 0.552805 | 3.4:+73940510 | None:intergenic |
| ATTTACAAATACTGCCTCAT+GGG | 0.552987 | 3.4:+73942624 | None:intergenic |
| TGATAGAGTCAATAAAATCA+TGG | 0.554811 | 3.4:+73941942 | None:intergenic |
| AAATCCACAAGGAATAAAAG+AGG | 0.555557 | 3.4:-73942355 | MS.gene29069:CDS |
| GGACGATTGCCTTATGGTGA+GGG | 0.555694 | 3.4:-73943415 | MS.gene29069:CDS |
| AATTTGAAGTTCAGAAGTGA+TGG | 0.558269 | 3.4:-73941989 | MS.gene29069:CDS |
| TTTCAGGATCCAGTAATGGA+TGG | 0.559262 | 3.4:-73940767 | MS.gene29069:CDS |
| TGTTAGACCGAAAAGTTGCT+TGG | 0.562615 | 3.4:-73939784 | MS.gene29069:CDS |
| ATGCATTACAGTGATAAGCC+TGG | 0.563441 | 3.4:-73940884 | MS.gene29069:intron |
| TTGATGGTGAAGGCAACTCA+AGG | 0.563996 | 3.4:-73939701 | MS.gene29069:CDS |
| TTCGGTTGTACCTAAGGTGA+AGG | 0.564448 | 3.4:-73943436 | MS.gene29069:CDS |
| CCTGAAATGGTTAAGTGTGT+CGG | 0.565716 | 3.4:+73940543 | None:intergenic |
| TGTGTCGGTGTGGTTTCCGA+TGG | 0.566607 | 3.4:+73940558 | None:intergenic |
| GACATAGAATTTGTATTCTG+AGG | 0.570441 | 3.4:-73939678 | None:intergenic |
| CTTTCCAAGCTGCCTAGTAG+AGG | 0.571601 | 3.4:-73940129 | MS.gene29069:CDS |
| TGCCGAGGGTGAAGACATGA+CGG | 0.575394 | 3.4:+73943295 | None:intergenic |
| TAGACCGAAAAGTTGCTTGG+TGG | 0.578729 | 3.4:-73939781 | MS.gene29069:CDS |
| TTCCATTGGAACATCACTTG+CGG | 0.579486 | 3.4:+73942971 | None:intergenic |
| ATCCGCAAGTGATGTTCCAA+TGG | 0.583214 | 3.4:-73942973 | MS.gene29069:CDS |
| AGAGATATTTGTGCCAGACT+GGG | 0.590054 | 3.4:-73941184 | MS.gene29069:CDS |
| ATCTGAGGATTTCATGCCAA+GGG | 0.592867 | 3.4:-73941265 | MS.gene29069:CDS |
| TGCACAATAGTAAACATCAA+AGG | 0.596912 | 3.4:-73939840 | MS.gene29069:CDS |
| TTTGTTTGGATGGTGCACTT+GGG | 0.600213 | 3.4:-73942397 | MS.gene29069:CDS |
| TGTGAGACATGCAACAAATG+AGG | 0.600971 | 3.4:+73941433 | None:intergenic |
| GAATAAAAGAGGGCATTCAA+AGG | 0.601533 | 3.4:-73942344 | MS.gene29069:intron |
| TATTTAGAGTCAAAATATGG+TGG | 0.602078 | 3.4:-73943016 | MS.gene29069:CDS |
| AGAAGAATTGTCCTGCGTAA+GGG | 0.602340 | 3.4:-73939874 | MS.gene29069:CDS |
| GACTTACCGGAGAGTGCCGA+GGG | 0.602477 | 3.4:+73943281 | None:intergenic |
| TTAAACAGTCTCTCAAGTGG+AGG | 0.605758 | 3.4:-73942217 | MS.gene29069:intron |
| GAAACATTAGGTTCAGGGTG+CGG | 0.606140 | 3.4:-73941531 | MS.gene29069:CDS |
| ACATTAGGTTCAGGGTGCGG+TGG | 0.606763 | 3.4:-73941528 | MS.gene29069:CDS |
| ATAGTAAACATCAAAGGCAG+AGG | 0.608568 | 3.4:-73939834 | MS.gene29069:CDS |
| AACAGGCAAGAAGAGAATGT+AGG | 0.609281 | 3.4:+73942854 | None:intergenic |
| ACCATTAAACTTGATGGTGA+AGG | 0.612381 | 3.4:-73939711 | MS.gene29069:CDS |
| TTCACATTGAAGAGTCTCCA+AGG | 0.612594 | 3.4:+73940092 | None:intergenic |
| TTTGTAGAGCAAGCACGAGA+CGG | 0.614843 | 3.4:-73941060 | MS.gene29069:intron |
| AGGACGATTGCCTTATGGTG+AGG | 0.621258 | 3.4:-73943416 | MS.gene29069:CDS |
| AATATGTTAGGTTTGCAACA+AGG | 0.621827 | 3.4:-73942030 | MS.gene29069:intron |
| ATATACAGTATCTCCAATCA+GGG | 0.622646 | 3.4:-73940067 | MS.gene29069:intron |
| GGCAGTATTTGTAAATTCAG+GGG | 0.622919 | 3.4:-73942617 | MS.gene29069:CDS |
| ATAGGCGTCTTTAATTGCCA+AGG | 0.624613 | 3.4:-73940603 | MS.gene29069:CDS |
| TTCAGTCAGCTGGTTCCACA+GGG | 0.625466 | 3.4:-73941704 | MS.gene29069:CDS |
| AATCCACAAGGAATAAAAGA+GGG | 0.625484 | 3.4:-73942354 | MS.gene29069:CDS |
| ATTTGCAGCATCCCTTACGC+AGG | 0.626088 | 3.4:+73939863 | None:intergenic |
| AGACTTACCGGAGAGTGCCG+AGG | 0.626415 | 3.4:+73943280 | None:intergenic |
| GTTGCTGGTGAAAATTGGAA+TGG | 0.626737 | 3.4:-73940483 | MS.gene29069:CDS |
| GCCGAGGGTGAAGACATGAC+GGG | 0.627661 | 3.4:+73943296 | None:intergenic |
| TCCGCAGATACGTTTACATG+TGG | 0.628225 | 3.4:-73941809 | MS.gene29069:intron |
| GAATTGGAGCTCGTTTAACG+CGG | 0.628314 | 3.4:+73942797 | None:intergenic |
| CATTAGAGACATCAATAGCA+AGG | 0.628449 | 3.4:-73941473 | MS.gene29069:CDS |
| CATCTGAGGATTTCATGCCA+AGG | 0.631175 | 3.4:-73941266 | MS.gene29069:CDS |
| AAATTAAACAGTCTCTCAAG+TGG | 0.633332 | 3.4:-73942220 | MS.gene29069:intron |
| ACAAACAATCTCGAGTAGGA+CGG | 0.638323 | 3.4:+73940789 | None:intergenic |
| CTTGACATGTACAATTCAGG+AGG | 0.640277 | 3.4:-73939903 | MS.gene29069:CDS |
| TACTCTAAAGTAAATCCACA+AGG | 0.645250 | 3.4:-73942366 | MS.gene29069:CDS |
| TGGTGGATGATACCGCGTGT+TGG | 0.654480 | 3.4:-73942999 | MS.gene29069:CDS |
| TGAAACAAACAATCTCGAGT+AGG | 0.658675 | 3.4:+73940785 | None:intergenic |
| GACGATTGCCTTATGGTGAG+GGG | 0.658944 | 3.4:-73943414 | MS.gene29069:CDS |
| TGATGGTGAAGGCAACTCAA+GGG | 0.660992 | 3.4:-73939700 | MS.gene29069:CDS |
| TCAAACCTTACATGTTGCGT+CGG | 0.663563 | 3.4:-73941232 | MS.gene29069:CDS |
| AAGCTGGCCAATGAAACCAT+CGG | 0.665066 | 3.4:-73940574 | MS.gene29069:CDS |
| GAACCTTAGAGATATAGCCA+TGG | 0.685161 | 3.4:-73941682 | MS.gene29069:CDS |
| CTTGCGGATTTCCCAACACG+CGG | 0.686991 | 3.4:+73942987 | None:intergenic |
| AGGATATTGGAGAAACACAA+AGG | 0.687687 | 3.4:-73942465 | MS.gene29069:CDS |
| AATGGTTAAGTGTGTCGGTG+TGG | 0.693578 | 3.4:+73940548 | None:intergenic |
| GAACTTGAATAAGCTGACTG+GGG | 0.696242 | 3.4:-73940628 | MS.gene29069:CDS |
| GCAGCAGCAAGAGCAATAGG+TGG | 0.714549 | 3.4:-73941026 | MS.gene29069:CDS |
| TCAAACTTCACAATCCCATG+AGG | 0.752833 | 3.4:-73942638 | MS.gene29069:CDS |
| TATATCTCTAAGGTTCCCTG+TGG | 0.766010 | 3.4:+73941689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAATAATATACTA+AGG | + | chr3.4:73940025-73940044 | None:intergenic | 10.0% |
| !! | TTCAATTAATACAATTAAAA+AGG | + | chr3.4:73942195-73942214 | None:intergenic | 10.0% |
| !! | ATAAGCACTTAAATATATAA+AGG | - | chr3.4:73942897-73942916 | MS.gene29069:CDS | 15.0% |
| !! | GTATTTAAAAAATATATGCA+GGG | - | chr3.4:73940067-73940086 | MS.gene29069:intron | 15.0% |
| !! | TAAGCACTTAAATATATAAA+GGG | - | chr3.4:73942898-73942917 | MS.gene29069:CDS | 15.0% |
| !! | TATTTAAAAAATATATGCAG+GGG | - | chr3.4:73940068-73940087 | MS.gene29069:CDS | 15.0% |
| !! | TGTATTTAAAAAATATATGC+AGG | - | chr3.4:73940066-73940085 | MS.gene29069:intron | 15.0% |
| !!! | TAAAAGTCATAAAATTTTGA+TGG | + | chr3.4:73941503-73941522 | None:intergenic | 15.0% |
| !!! | TACTTATATAAACACTTTTA+AGG | - | chr3.4:73942744-73942763 | MS.gene29069:intron | 15.0% |
| !!! | TTTTATAACATTATTAGACT+TGG | + | chr3.4:73943141-73943160 | None:intergenic | 15.0% |
| !! | AGGTTTGAATGTTAAATTTA+GGG | - | chr3.4:73942691-73942710 | MS.gene29069:intron | 20.0% |
| !! | ATGTTAACATATGTATAAAC+AGG | - | chr3.4:73943160-73943179 | MS.gene29069:intron | 20.0% |
| !! | CAAAATTTGATAGAAACATT+AGG | - | chr3.4:73941581-73941600 | MS.gene29069:CDS | 20.0% |
| !! | GTAAAGAATCGATAATAATA+TGG | + | chr3.4:73942459-73942478 | None:intergenic | 20.0% |
| !! | TTCATTATTAGCTAACTTAT+CGG | + | chr3.4:73939948-73939967 | None:intergenic | 20.0% |
| !!! | ATTTTTATTCCTAATGACAT+AGG | - | chr3.4:73940639-73940658 | MS.gene29069:CDS | 20.0% |
| !!! | CACATCTTTTATAATATGTT+AGG | - | chr3.4:73941082-73941101 | MS.gene29069:intron | 20.0% |
| !!! | CTAATGTTTCTATCAAATTT+TGG | + | chr3.4:73941583-73941602 | None:intergenic | 20.0% |
| !!! | CTTTATTTAGAGTCAAAATA+TGG | - | chr3.4:73940105-73940124 | MS.gene29069:CDS | 20.0% |
| !!! | TACAATGAATTTTTCAAAGA+AGG | - | chr3.4:73940976-73940995 | MS.gene29069:intron | 20.0% |
| !!! | TACAATTAAAAAGGTTTTTG+CGG | + | chr3.4:73942186-73942205 | None:intergenic | 20.0% |
| ! | AATGAGACAAGAATATTACT+TGG | + | chr3.4:73941973-73941992 | None:intergenic | 25.0% |
| ! | ATAAGCTGAAAACAACTTAT+AGG | + | chr3.4:73942807-73942826 | None:intergenic | 25.0% |
| ! | ATCAAGAATTCTATCAGATT+TGG | + | chr3.4:73942150-73942169 | None:intergenic | 25.0% |
| ! | ATGAAAATTGATCAGAAAAG+TGG | + | chr3.4:73942423-73942442 | None:intergenic | 25.0% |
| ! | CAATTGAGAGTAATGAAAAA+AGG | + | chr3.4:73941808-73941827 | None:intergenic | 25.0% |
| ! | CACAATGTTTATTAGAGTTT+AGG | - | chr3.4:73940601-73940620 | MS.gene29069:CDS | 25.0% |
| ! | CAGGTTTGAATGTTAAATTT+AGG | - | chr3.4:73942690-73942709 | MS.gene29069:intron | 25.0% |
| ! | CATATGTATAAACAGGTATT+TGG | - | chr3.4:73943167-73943186 | MS.gene29069:intron | 25.0% |
| ! | CTTAAGTTAATGAGAATCAT+GGG | + | chr3.4:73941269-73941288 | None:intergenic | 25.0% |
| ! | TCTTAAGTTAATGAGAATCA+TGG | + | chr3.4:73941270-73941289 | None:intergenic | 25.0% |
| ! | TGATAGAGTCAATAAAATCA+TGG | + | chr3.4:73941185-73941204 | None:intergenic | 25.0% |
| ! | TGTAACTATTTGTCTCTAAA+TGG | - | chr3.4:73942397-73942416 | MS.gene29069:CDS | 25.0% |
| ! | TTTCTGTCATCTTGAAAATA+AGG | - | chr3.4:73940685-73940704 | MS.gene29069:intron | 25.0% |
| !! | ACAATTAAAAAGGTTTTTGC+GGG | + | chr3.4:73942185-73942204 | None:intergenic | 25.0% |
| !! | ATCAAAGTTTTCAAATTTGC+AGG | + | chr3.4:73940865-73940884 | None:intergenic | 25.0% |
| !! | TATTTAGAGTCAAAATATGG+TGG | - | chr3.4:73940108-73940127 | MS.gene29069:CDS | 25.0% |
| !!! | ATTTTAAAATCATGATTGCC+AGG | + | chr3.4:73942261-73942280 | None:intergenic | 25.0% |
| !!! | CTTATTTTCTTAAGCTTTTC+AGG | - | chr3.4:73942822-73942841 | MS.gene29069:CDS | 25.0% |
| !!! | CTTTGATTTTTGAATGCTTT+AGG | - | chr3.4:73940451-73940470 | MS.gene29069:intron | 25.0% |
| AAAATATATGCAGGGGATAT+AGG | - | chr3.4:73940075-73940094 | MS.gene29069:CDS | 30.0% | |
| AAATCCACAAGGAATAAAAG+AGG | - | chr3.4:73940769-73940788 | MS.gene29069:CDS | 30.0% | |
| AAATTAAACAGTCTCTCAAG+TGG | - | chr3.4:73940904-73940923 | MS.gene29069:intron | 30.0% | |
| AAGGATGATTCATCAGAAAA+AGG | + | chr3.4:73941789-73941808 | None:intergenic | 30.0% | |
| AATATGTTAGGTTTGCAACA+AGG | - | chr3.4:73941094-73941113 | MS.gene29069:intron | 30.0% | |
| AATCCACAAGGAATAAAAGA+GGG | - | chr3.4:73940770-73940789 | MS.gene29069:CDS | 30.0% | |
| AATTGAAATGAGAGACTTAC+TGG | + | chr3.4:73941023-73941042 | None:intergenic | 30.0% | |
| AATTTACAAATACTGCCTCA+TGG | + | chr3.4:73940504-73940523 | None:intergenic | 30.0% | |
| ACAACTCTGATTCAATTTAC+AGG | - | chr3.4:73941711-73941730 | MS.gene29069:CDS | 30.0% | |
| AGGCAGTATTTGTAAATTCA+GGG | - | chr3.4:73940506-73940525 | MS.gene29069:CDS | 30.0% | |
| ATAGGCTTCTTATTGAGATA+AGG | + | chr3.4:73941235-73941254 | None:intergenic | 30.0% | |
| ATATACAGTATCTCCAATCA+GGG | - | chr3.4:73943057-73943076 | MS.gene29069:intron | 30.0% | |
| ATCTGCTATAAGAAAAGAGA+AGG | + | chr3.4:73939874-73939893 | None:intergenic | 30.0% | |
| ATTGAAATGAGAGACTTACT+GGG | + | chr3.4:73941022-73941041 | None:intergenic | 30.0% | |
| ATTTACAAATACTGCCTCAT+GGG | + | chr3.4:73940503-73940522 | None:intergenic | 30.0% | |
| GACGTGTTTCATTAACAAAA+CGG | - | chr3.4:73941618-73941637 | MS.gene29069:CDS | 30.0% | |
| TAAACATTGTGTAGAGAGTA+TGG | + | chr3.4:73940592-73940611 | None:intergenic | 30.0% | |
| TATATACAGTATCTCCAATC+AGG | - | chr3.4:73943056-73943075 | MS.gene29069:intron | 30.0% | |
| TCATCAACGATGATAAACTT+TGG | + | chr3.4:73940940-73940959 | None:intergenic | 30.0% | |
| TCTGCTATAAGAAAAGAGAA+GGG | + | chr3.4:73939873-73939892 | None:intergenic | 30.0% | |
| TGAATTGGATATACAAGCTT+CGG | + | chr3.4:73941404-73941423 | None:intergenic | 30.0% | |
| TGATAGAAACATTAGGTTCA+GGG | - | chr3.4:73941588-73941607 | MS.gene29069:CDS | 30.0% | |
| TGCACAATAGTAAACATCAA+AGG | - | chr3.4:73943284-73943303 | MS.gene29069:intron | 30.0% | |
| TTACTGACCATTAAACTTGA+TGG | - | chr3.4:73943407-73943426 | MS.gene29069:CDS | 30.0% | |
| TTCCTAATGACATAGGATAT+TGG | - | chr3.4:73940646-73940665 | MS.gene29069:CDS | 30.0% | |
| TTGATAGAAACATTAGGTTC+AGG | - | chr3.4:73941587-73941606 | MS.gene29069:CDS | 30.0% | |
| TTTACAGTCTGCTGAAAATT+TGG | - | chr3.4:73942474-73942493 | MS.gene29069:intron | 30.0% | |
| ! | AAGTTTATCATCGTTGATGA+TGG | - | chr3.4:73940940-73940959 | MS.gene29069:intron | 30.0% |
| ! | AATTTGAAGTTCAGAAGTGA+TGG | - | chr3.4:73941135-73941154 | MS.gene29069:intron | 30.0% |
| ! | ACATGTAAGGTTTGAAATGT+TGG | + | chr3.4:73941887-73941906 | None:intergenic | 30.0% |
| ! | ACTTCTAATTTTCCTCTACT+AGG | + | chr3.4:73943010-73943029 | None:intergenic | 30.0% |
| ! | CAATTAAAAAGGTTTTTGCG+GGG | + | chr3.4:73942184-73942203 | None:intergenic | 30.0% |
| ! | GAATCTTTGATTAGCTCAAA+TGG | + | chr3.4:73940538-73940557 | None:intergenic | 30.0% |
| ! | TACAAACTGTACAATTTTGC+AGG | - | chr3.4:73942968-73942987 | MS.gene29069:CDS | 30.0% |
| ! | TTTTCATTGCGTTTGAAGAT+GGG | + | chr3.4:73941373-73941392 | None:intergenic | 30.0% |
| ! | TTTTTCATTGCGTTTGAAGA+TGG | + | chr3.4:73941374-73941393 | None:intergenic | 30.0% |
| !! | AGGAAAATTAGAAGTATCCT+TGG | - | chr3.4:73943015-73943034 | MS.gene29069:CDS | 30.0% |
| !! | GAGAAACAACAATGTTTTGA+GGG | + | chr3.4:73939757-73939776 | None:intergenic | 30.0% |
| !! | TACATCTTGATTTGTTTGGA+TGG | - | chr3.4:73940717-73940736 | MS.gene29069:intron | 30.0% |
| !! | TACTCTAAAGTAAATCCACA+AGG | - | chr3.4:73940758-73940777 | MS.gene29069:intron | 30.0% |
| AACAAGGCTGATAGACATTA+AGG | - | chr3.4:73941110-73941129 | MS.gene29069:intron | 35.0% | |
| AACATTCAAACCTGCATTGA+AGG | + | chr3.4:73942684-73942703 | None:intergenic | 35.0% | |
| AAGAAGCTAGTACTACCTAA+TGG | - | chr3.4:73942285-73942304 | MS.gene29069:intron | 35.0% | |
| AATTTGCAGGCTTATCACAT+AGG | + | chr3.4:73940852-73940871 | None:intergenic | 35.0% | |
| AGAAGCAATTGAGTTTCCAT+TGG | + | chr3.4:73940170-73940189 | None:intergenic | 35.0% | |
| AGGATATTGGAGAAACACAA+AGG | - | chr3.4:73940659-73940678 | MS.gene29069:intron | 35.0% | |
| AGTTAATGAGAATCATGGGA+CGG | + | chr3.4:73941265-73941284 | None:intergenic | 35.0% | |
| ATACTATATGCCTTCAATGC+AGG | - | chr3.4:73942671-73942690 | MS.gene29069:intron | 35.0% | |
| ATAGTAAACATCAAAGGCAG+AGG | - | chr3.4:73943290-73943309 | MS.gene29069:CDS | 35.0% | |
| CATTAGAGACATCAATAGCA+AGG | - | chr3.4:73941651-73941670 | MS.gene29069:CDS | 35.0% | |
| CCAAACAAATCAAGATGTAC+AGG | + | chr3.4:73940716-73940735 | None:intergenic | 35.0% | |
| CTCCAATATCCTATGTCATT+AGG | + | chr3.4:73940651-73940670 | None:intergenic | 35.0% | |
| GAGGCAGTATTTGTAAATTC+AGG | - | chr3.4:73940505-73940524 | MS.gene29069:CDS | 35.0% | |
| GCATGAGAACTAAGAAATGA+AGG | + | chr3.4:73941061-73941080 | None:intergenic | 35.0% | |
| GGATTGTGAAGTTTGAACAT+AGG | + | chr3.4:73940482-73940501 | None:intergenic | 35.0% | |
| GGCAGTATTTGTAAATTCAG+GGG | - | chr3.4:73940507-73940526 | MS.gene29069:CDS | 35.0% | |
| TAATCCATCTTCAGAGTTGT+AGG | + | chr3.4:73943390-73943409 | None:intergenic | 35.0% | |
| TACATGTCAAGCAATCCAAT+TGG | + | chr3.4:73943212-73943231 | None:intergenic | 35.0% | |
| TACTCGAGATTGTTTGTTTC+AGG | - | chr3.4:73942341-73942360 | MS.gene29069:intron | 35.0% | |
| TACTGGGTTCCTTCAATTAT+CGG | + | chr3.4:73941006-73941025 | None:intergenic | 35.0% | |
| TGAAACAAACAATCTCGAGT+AGG | + | chr3.4:73942342-73942361 | None:intergenic | 35.0% | |
| TGAACAAGCATACTCATTGT+CGG | + | chr3.4:73941294-73941313 | None:intergenic | 35.0% | |
| TGAAGAAACTCAACATCAAG+TGG | + | chr3.4:73942617-73942636 | None:intergenic | 35.0% | |
| TGATGTTGAGTTTCTTCAAG+AGG | - | chr3.4:73942619-73942638 | MS.gene29069:CDS | 35.0% | |
| TGTACAGTTTGTAAGCATGT+TGG | + | chr3.4:73942961-73942980 | None:intergenic | 35.0% | |
| TTGCTTGACATGTACAATTC+AGG | - | chr3.4:73943218-73943237 | MS.gene29069:intron | 35.0% | |
| TTTGTTTCAGGATCCAGTAA+TGG | - | chr3.4:73942353-73942372 | MS.gene29069:CDS | 35.0% | |
| ! | AGCTTTTAACAGTCTTCTTC+TGG | - | chr3.4:73941916-73941935 | MS.gene29069:intron | 35.0% |
| ! | GCTTTTAACAGTCTTCTTCT+GGG | - | chr3.4:73941917-73941936 | MS.gene29069:intron | 35.0% |
| ! | GGAGAAACAACAATGTTTTG+AGG | + | chr3.4:73939758-73939777 | None:intergenic | 35.0% |
| ! | TACCTTTTACCATCCATTAC+TGG | + | chr3.4:73942369-73942388 | None:intergenic | 35.0% |
| ! | TCTGAAAATGTTGATGAGTC+TGG | - | chr3.4:73942012-73942031 | MS.gene29069:CDS | 35.0% |
| ! | TGGTCTAACTTTTCCTGAAA+TGG | + | chr3.4:73942597-73942616 | None:intergenic | 35.0% |
| ! | TGTTAAATTTAGGGCATGTC+TGG | - | chr3.4:73942700-73942719 | MS.gene29069:intron | 35.0% |
| !! | ACCATTAAACTTGATGGTGA+AGG | - | chr3.4:73943413-73943432 | MS.gene29069:CDS | 35.0% |
| !! | ATCCAGTAATGGATGGTAAA+AGG | - | chr3.4:73942364-73942383 | MS.gene29069:CDS | 35.0% |
| !! | CCTGTACATCTTGATTTGTT+TGG | - | chr3.4:73940713-73940732 | MS.gene29069:intron | 35.0% |
| !! | GAATAAAAGAGGGCATTCAA+AGG | - | chr3.4:73940780-73940799 | MS.gene29069:CDS | 35.0% |
| !! | TTATCATCGTTGATGATGGA+TGG | - | chr3.4:73940944-73940963 | MS.gene29069:intron | 35.0% |
| !! | TTTTCCTACAACTCTGAAGA+TGG | - | chr3.4:73943383-73943402 | MS.gene29069:CDS | 35.0% |
| AACAGGCAAGAAGAGAATGT+AGG | + | chr3.4:73940273-73940292 | None:intergenic | 40.0% | |
| AACCACTTTCAACGCAGAAT+TGG | + | chr3.4:73940346-73940365 | None:intergenic | 40.0% | |
| AAGAGGTTGCTGGTGAAAAT+TGG | - | chr3.4:73942636-73942655 | MS.gene29069:CDS | 40.0% | |
| ACAAACAATCTCGAGTAGGA+CGG | + | chr3.4:73942338-73942357 | None:intergenic | 40.0% | |
| AGAAGAATTGTCCTGCGTAA+GGG | - | chr3.4:73943250-73943269 | MS.gene29069:intron | 40.0% | |
| AGAGATATTTGTGCCAGACT+GGG | - | chr3.4:73941940-73941959 | MS.gene29069:CDS | 40.0% | |
| AGCCTGGAAAAATATGGAGT+GGG | - | chr3.4:73941467-73941486 | MS.gene29069:CDS | 40.0% | |
| ATAGGCGTCTTTAATTGCCA+AGG | - | chr3.4:73942521-73942540 | MS.gene29069:intron | 40.0% | |
| ATCTGAGGATTTCATGCCAA+GGG | - | chr3.4:73941859-73941878 | MS.gene29069:intron | 40.0% | |
| ATGCATTACAGTGATAAGCC+TGG | - | chr3.4:73942240-73942259 | MS.gene29069:intron | 40.0% | |
| ATGGACAGCCTGGAAAAATA+TGG | - | chr3.4:73941461-73941480 | MS.gene29069:CDS | 40.0% | |
| ATTTGTTTGGATGGTGCACT+TGG | - | chr3.4:73940726-73940745 | MS.gene29069:intron | 40.0% | |
| CATATGCAATTTGCGCCAAT+TGG | - | chr3.4:73943194-73943213 | MS.gene29069:intron | 40.0% | |
| CATGCTTTAGCTGGTTATTG+GGG | - | chr3.4:73941338-73941357 | MS.gene29069:intron | 40.0% | |
| CCTGAAATGGTTAAGTGTGT+CGG | + | chr3.4:73942584-73942603 | None:intergenic | 40.0% | |
| CTTGACATGTACAATTCAGG+AGG | - | chr3.4:73943221-73943240 | MS.gene29069:intron | 40.0% | |
| GAACCTTAGAGATATAGCCA+TGG | - | chr3.4:73941442-73941461 | MS.gene29069:CDS | 40.0% | |
| GAACTTGAATAAGCTGACTG+GGG | - | chr3.4:73942496-73942515 | MS.gene29069:intron | 40.0% | |
| GACTATTTCGGTTGTACCTA+AGG | - | chr3.4:73939682-73939701 | MS.gene29069:CDS | 40.0% | |
| GAGATTGTTGCAAGAACTGT+TGG | + | chr3.4:73941163-73941182 | None:intergenic | 40.0% | |
| GCATGCTTTAGCTGGTTATT+GGG | - | chr3.4:73941337-73941356 | MS.gene29069:intron | 40.0% | |
| GCCTTCACCATCAAGTTTAA+TGG | + | chr3.4:73943417-73943436 | None:intergenic | 40.0% | |
| GGAAACTCAATTGCTTCTAG+TGG | - | chr3.4:73940172-73940191 | MS.gene29069:intron | 40.0% | |
| GGAACTTGAATAAGCTGACT+GGG | - | chr3.4:73942495-73942514 | MS.gene29069:intron | 40.0% | |
| GTATATCCAATTCAGTCAGC+TGG | - | chr3.4:73941410-73941429 | MS.gene29069:intron | 40.0% | |
| GTGGTTGTGCAGTATATGTT+AGG | - | chr3.4:73942117-73942136 | MS.gene29069:intron | 40.0% | |
| GTTGCTGGTGAAAATTGGAA+TGG | - | chr3.4:73942641-73942660 | MS.gene29069:CDS | 40.0% | |
| TAGAAGAATTGTCCTGCGTA+AGG | - | chr3.4:73943249-73943268 | MS.gene29069:intron | 40.0% | |
| TCAAACCTTACATGTTGCGT+CGG | - | chr3.4:73941892-73941911 | MS.gene29069:intron | 40.0% | |
| TCAAACTTCACAATCCCATG+AGG | - | chr3.4:73940486-73940505 | MS.gene29069:CDS | 40.0% | |
| TGGAACTTGAATAAGCTGAC+TGG | - | chr3.4:73942494-73942513 | MS.gene29069:intron | 40.0% | |
| TGTCCATGGCTATATCTCTA+AGG | + | chr3.4:73941448-73941467 | None:intergenic | 40.0% | |
| TGTGAGACATGCAACAAATG+AGG | + | chr3.4:73941694-73941713 | None:intergenic | 40.0% | |
| TGTTAGACCGAAAAGTTGCT+TGG | - | chr3.4:73943340-73943359 | MS.gene29069:CDS | 40.0% | |
| TTAAACAGTCTCTCAAGTGG+AGG | - | chr3.4:73940907-73940926 | MS.gene29069:intron | 40.0% | |
| TTCACATTGAAGAGTCTCCA+AGG | + | chr3.4:73943035-73943054 | None:intergenic | 40.0% | |
| TTCCATTGGAACATCACTTG+CGG | + | chr3.4:73940156-73940175 | None:intergenic | 40.0% | |
| TTTGTTTGGATGGTGCACTT+GGG | - | chr3.4:73940727-73940746 | MS.gene29069:intron | 40.0% | |
| ! | AACTTATCGGCTATCAGCTA+CGG | + | chr3.4:73939935-73939954 | None:intergenic | 40.0% |
| ! | AGGCTGTTTGAGATAGCTTA+TGG | - | chr3.4:73942764-73942783 | MS.gene29069:intron | 40.0% |
| ! | ATATTTTTCCAGGCTGTCCA+TGG | + | chr3.4:73941462-73941481 | None:intergenic | 40.0% |
| ! | ATGCCCTCTTTTATTCCTTG+TGG | + | chr3.4:73940776-73940795 | None:intergenic | 40.0% |
| ! | ATGTCCACCAAGCAACTTTT+CGG | + | chr3.4:73943350-73943369 | None:intergenic | 40.0% |
| ! | CATTCTCTTCTTGCCTGTTT+TGG | - | chr3.4:73940274-73940293 | MS.gene29069:intron | 40.0% |
| ! | GCAACTTTTCGGTCTAACAT+TGG | + | chr3.4:73943339-73943358 | None:intergenic | 40.0% |
| ! | TTCCCACTCCATATTTTTCC+AGG | + | chr3.4:73941472-73941491 | None:intergenic | 40.0% |
| ! | TTTCAGGATCCAGTAATGGA+TGG | - | chr3.4:73942357-73942376 | MS.gene29069:CDS | 40.0% |
| !! | GTTTGAAATGTTGGTTCCCT+TGG | + | chr3.4:73941878-73941897 | None:intergenic | 40.0% |
| !! | TATATCTCTAAGGTTCCCTG+TGG | + | chr3.4:73941438-73941457 | None:intergenic | 40.0% |
| !!! | TCAGCAGGATCTGCTTTTTT+AGG | - | chr3.4:73939782-73939801 | MS.gene29069:CDS | 40.0% |
| AAAGCAGATCCTGCTGAAAC+AGG | + | chr3.4:73939779-73939798 | None:intergenic | 45.0% | |
| AACATCAAAGGCAGAGGATG+TGG | - | chr3.4:73943296-73943315 | MS.gene29069:CDS | 45.0% | |
| AAGCTGGCCAATGAAACCAT+CGG | - | chr3.4:73942550-73942569 | MS.gene29069:intron | 45.0% | |
| AATAAGCTGACTGGGGTCAT+AGG | - | chr3.4:73942503-73942522 | MS.gene29069:intron | 45.0% | |
| ACAGTATCTCCAATCAGGGT+TGG | - | chr3.4:73943061-73943080 | MS.gene29069:intron | 45.0% | |
| AGAGAAGGGATGAGACTTAC+CGG | + | chr3.4:73939859-73939878 | None:intergenic | 45.0% | |
| ATCCGCAAGTGATGTTCCAA+TGG | - | chr3.4:73940151-73940170 | MS.gene29069:intron | 45.0% | |
| CACAGTTATCTTGCTAGCTG+TGG | - | chr3.4:73941533-73941552 | MS.gene29069:CDS | 45.0% | |
| CAGCCTGGAAAAATATGGAG+TGG | - | chr3.4:73941466-73941485 | MS.gene29069:CDS | 45.0% | |
| CATCTGAGGATTTCATGCCA+AGG | - | chr3.4:73941858-73941877 | MS.gene29069:intron | 45.0% | |
| CATTGGAGTACGCTCCAAAT+CGG | + | chr3.4:73943322-73943341 | None:intergenic | 45.0% | |
| CCGACACACTTAACCATTTC+AGG | - | chr3.4:73942581-73942600 | MS.gene29069:intron | 45.0% | |
| CTCCAATTCTGCGTTGAAAG+TGG | - | chr3.4:73940341-73940360 | MS.gene29069:intron | 45.0% | |
| GAAACATTAGGTTCAGGGTG+CGG | - | chr3.4:73941593-73941612 | MS.gene29069:CDS | 45.0% | |
| GAAGGCGAACCGATAATTGA+AGG | - | chr3.4:73940994-73941013 | MS.gene29069:intron | 45.0% | |
| GAATTGGAGCTCGTTTAACG+CGG | + | chr3.4:73940330-73940349 | None:intergenic | 45.0% | |
| GAGAGATATTTGTGCCAGAC+TGG | - | chr3.4:73941939-73941958 | MS.gene29069:CDS | 45.0% | |
| GAGTTTCTTCAAGAGGTTGC+TGG | - | chr3.4:73942626-73942645 | MS.gene29069:CDS | 45.0% | |
| GCCACATGTAAACGTATCTG+CGG | + | chr3.4:73941319-73941338 | None:intergenic | 45.0% | |
| GCTCTCAAGACTGATCCATT+AGG | + | chr3.4:73942303-73942322 | None:intergenic | 45.0% | |
| GGCATGCTTTAGCTGGTTAT+TGG | - | chr3.4:73941336-73941355 | MS.gene29069:intron | 45.0% | |
| GTCATAACACCAACCCTGAT+TGG | + | chr3.4:73943073-73943092 | None:intergenic | 45.0% | |
| GTCTTGAGAGCAAGATATGC+TGG | - | chr3.4:73942312-73942331 | MS.gene29069:intron | 45.0% | |
| GTCTTTAATTGCCAAGGAGC+AGG | - | chr3.4:73942527-73942546 | MS.gene29069:intron | 45.0% | |
| GTGGTTTCCGATGGTTTCAT+TGG | + | chr3.4:73942560-73942579 | None:intergenic | 45.0% | |
| TACATGTGGCATGCTTTAGC+TGG | - | chr3.4:73941329-73941348 | MS.gene29069:intron | 45.0% | |
| TAGACCGAAAAGTTGCTTGG+TGG | - | chr3.4:73943343-73943362 | MS.gene29069:CDS | 45.0% | |
| TCATGGGACGGAAGTTCAAT+AGG | + | chr3.4:73941253-73941272 | None:intergenic | 45.0% | |
| TCCGCAGATACGTTTACATG+TGG | - | chr3.4:73941315-73941334 | MS.gene29069:intron | 45.0% | |
| TTCGGTTGTACCTAAGGTGA+AGG | - | chr3.4:73939688-73939707 | MS.gene29069:CDS | 45.0% | |
| TTTGTAGAGCAAGCACGAGA+CGG | - | chr3.4:73942064-73942083 | MS.gene29069:intron | 45.0% | |
| ! | AATGGTTAAGTGTGTCGGTG+TGG | + | chr3.4:73942579-73942598 | None:intergenic | 45.0% |
| ! | ACATGACGGGAACTAGGAAT+AGG | + | chr3.4:73939818-73939837 | None:intergenic | 45.0% |
| ! | TGATGGTGAAGGCAACTCAA+GGG | - | chr3.4:73943424-73943443 | MS.gene29069:CDS | 45.0% |
| ! | TTTTCCTCTACTAGGCAGCT+TGG | + | chr3.4:73943002-73943021 | None:intergenic | 45.0% |
| !! | CTCTTCTTGCCTGTTTTGGA+TGG | - | chr3.4:73940278-73940297 | MS.gene29069:intron | 45.0% |
| !! | GTTGTTTCTCCTGTTTCAGC+AGG | - | chr3.4:73939767-73939786 | MS.gene29069:CDS | 45.0% |
| !! | TTGATGGTGAAGGCAACTCA+AGG | - | chr3.4:73943423-73943442 | MS.gene29069:CDS | 45.0% |
| ACTTGGAACATGTCCCAGTC+TGG | + | chr3.4:73941956-73941975 | None:intergenic | 50.0% | |
| AGATATAGCCATGGACAGCC+TGG | - | chr3.4:73941451-73941470 | MS.gene29069:CDS | 50.0% | |
| AGCTACCGACGCAACATGTA+AGG | + | chr3.4:73941900-73941919 | None:intergenic | 50.0% | |
| AGGACGATTGCCTTATGGTG+AGG | - | chr3.4:73939708-73939727 | MS.gene29069:CDS | 50.0% | |
| AGGCAATCGTCCTTCACCTT+AGG | + | chr3.4:73939701-73939720 | None:intergenic | 50.0% | |
| ATTTGCAGCATCCCTTACGC+AGG | + | chr3.4:73943264-73943283 | None:intergenic | 50.0% | |
| CATGCAGCAGCAAGAGCAAT+AGG | - | chr3.4:73942095-73942114 | MS.gene29069:intron | 50.0% | |
| CGAAAGGCTCCATCCAAAAC+AGG | + | chr3.4:73940290-73940309 | None:intergenic | 50.0% | |
| CTATTGCTCTTGCTGCTGCA+TGG | + | chr3.4:73942097-73942116 | None:intergenic | 50.0% | |
| CTTTCCAAGCTGCCTAGTAG+AGG | - | chr3.4:73942995-73943014 | MS.gene29069:CDS | 50.0% | |
| GACGATTGCCTTATGGTGAG+GGG | - | chr3.4:73939710-73939729 | MS.gene29069:CDS | 50.0% | |
| GCTTTAGCTGGTTATTGGGG+AGG | - | chr3.4:73941341-73941360 | MS.gene29069:intron | 50.0% | |
| GGACGATTGCCTTATGGTGA+GGG | - | chr3.4:73939709-73939728 | MS.gene29069:CDS | 50.0% | |
| GGTGAAGGACGATTGCCTTA+TGG | - | chr3.4:73939703-73939722 | MS.gene29069:CDS | 50.0% | |
| GTGGAACCAGCTGACTGAAT+TGG | + | chr3.4:73941419-73941438 | None:intergenic | 50.0% | |
| TCCTTGCAAAGTTGCGCGAA+AGG | + | chr3.4:73940306-73940325 | None:intergenic | 50.0% | |
| ! | AAGTTGCTTGGTGGACATGC+AGG | - | chr3.4:73943352-73943371 | MS.gene29069:CDS | 50.0% |
| ! | ATTCAGTCAGCTGGTTCCAC+AGG | - | chr3.4:73941419-73941438 | MS.gene29069:CDS | 50.0% |
| ! | GTGAAGACATGACGGGAACT+AGG | + | chr3.4:73939824-73939843 | None:intergenic | 50.0% |
| ! | TTCAGTCAGCTGGTTCCACA+GGG | - | chr3.4:73941420-73941439 | MS.gene29069:CDS | 50.0% |
| !! | TGCAGTAGCAAGAGCATCTG+AGG | - | chr3.4:73941844-73941863 | MS.gene29069:intron | 50.0% |
| ACATTAGGTTCAGGGTGCGG+TGG | - | chr3.4:73941596-73941615 | MS.gene29069:CDS | 55.0% | |
| ATTGCCAAGGAGCAGGAAGC+TGG | - | chr3.4:73942534-73942553 | MS.gene29069:intron | 55.0% | |
| CTTGCGGATTTCCCAACACG+CGG | + | chr3.4:73940140-73940159 | None:intergenic | 55.0% | |
| GCAGCAGCAAGAGCAATAGG+TGG | - | chr3.4:73942098-73942117 | MS.gene29069:intron | 55.0% | |
| GCCTTTCGCGCAACTTTGCA+AGG | - | chr3.4:73940302-73940321 | MS.gene29069:intron | 55.0% | |
| GGTGGATGATACCGCGTGTT+GGG | - | chr3.4:73940126-73940145 | MS.gene29069:CDS | 55.0% | |
| TCACGTTGCCCCTCACCATA+AGG | + | chr3.4:73939721-73939740 | None:intergenic | 55.0% | |
| TCCCGTCATGTCTTCACCCT+CGG | - | chr3.4:73939827-73939846 | MS.gene29069:CDS | 55.0% | |
| TGCCGAGGGTGAAGACATGA+CGG | + | chr3.4:73939832-73939851 | None:intergenic | 55.0% | |
| ! | CTTGGTGGACATGCAGGAGA+AGG | - | chr3.4:73943358-73943377 | MS.gene29069:CDS | 55.0% |
| ! | TGGTGGATGATACCGCGTGT+TGG | - | chr3.4:73940125-73940144 | MS.gene29069:CDS | 55.0% |
| ! | TGTGTCGGTGTGGTTTCCGA+TGG | + | chr3.4:73942569-73942588 | None:intergenic | 55.0% |
| GCCGAGGGTGAAGACATGAC+GGG | + | chr3.4:73939831-73939850 | None:intergenic | 60.0% | |
| GGCAGAGGATGTGGCCGATT+TGG | - | chr3.4:73943305-73943324 | MS.gene29069:CDS | 60.0% | |
| TCTTCACCCTCGGCACTCTC+CGG | - | chr3.4:73939837-73939856 | MS.gene29069:CDS | 60.0% | |
| TTGGCCAGCTTCCTGCTCCT+TGG | + | chr3.4:73942541-73942560 | None:intergenic | 60.0% | |
| ! | CTTGCTAGCTGTGGCGTCGA+TGG | - | chr3.4:73941542-73941561 | MS.gene29069:CDS | 60.0% |
| !! | AGACTTACCGGAGAGTGCCG+AGG | + | chr3.4:73939847-73939866 | None:intergenic | 60.0% |
| !! | GACTTACCGGAGAGTGCCGA+GGG | + | chr3.4:73939846-73939865 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 73939680 | 73943466 | 73939680 | ID=MS.gene29069 |
| chr3.4 | mRNA | 73939680 | 73943466 | 73939680 | ID=MS.gene29069.t1;Parent=MS.gene29069 |
| chr3.4 | exon | 73943288 | 73943466 | 73943288 | ID=MS.gene29069.t1.exon1;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73943288 | 73943466 | 73943288 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73942784 | 73943058 | 73942784 | ID=MS.gene29069.t1.exon2;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73942784 | 73943058 | 73942784 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73942583 | 73942673 | 73942583 | ID=MS.gene29069.t1.exon3;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73942583 | 73942673 | 73942583 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73942345 | 73942485 | 73942345 | ID=MS.gene29069.t1.exon4;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73942345 | 73942485 | 73942345 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73942124 | 73942231 | 73942124 | ID=MS.gene29069.t1.exon5;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73942124 | 73942231 | 73942124 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73941923 | 73942042 | 73941923 | ID=MS.gene29069.t1.exon6;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73941923 | 73942042 | 73941923 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73941414 | 73941824 | 73941414 | ID=MS.gene29069.t1.exon7;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73941414 | 73941824 | 73941414 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73941173 | 73941314 | 73941173 | ID=MS.gene29069.t1.exon8;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73941173 | 73941314 | 73941173 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73941008 | 73941075 | 73941008 | ID=MS.gene29069.t1.exon9;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73941008 | 73941075 | 73941008 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73940761 | 73940895 | 73940761 | ID=MS.gene29069.t1.exon10;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73940761 | 73940895 | 73940761 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73940454 | 73940665 | 73940454 | ID=MS.gene29069.t1.exon11;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73940454 | 73940665 | 73940454 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73940068 | 73940156 | 73940068 | ID=MS.gene29069.t1.exon12;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73940068 | 73940156 | 73940068 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| chr3.4 | exon | 73939680 | 73939964 | 73939680 | ID=MS.gene29069.t1.exon13;Parent=MS.gene29069.t1 |
| chr3.4 | CDS | 73939680 | 73939964 | 73939680 | ID=cds.MS.gene29069.t1;Parent=MS.gene29069.t1 |
| Gene Sequence |
| Protein sequence |
